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Oryza sativa
cluster # 14226 cluster # 14226       Sequences # 15       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14226#0 length = 1444 sequences # 9  
consensus_14226#1 length = 1377 sequences # 5  
consensus_14226#2 length = 440 sequences # 1  

consensusID : consensus_14226#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1444
fasta sequence
                              [GGCCGAATAGACGATTGAACAACAGGCCGAAGAAACCAAAAATGGTGTAGCCTGAAG--GTGAAGCTGTCA-AGCACC--CAAATGGCGGCGCCGGTGAGGTCGGTCCTCCCCGTCGTCCTCCTCGGCTGCGGCGGCGTCGGCCGCCACCTTCTCCGCCACATCGTCTCCTGCCGCCCGCTCCACGCCAACCAGGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCGCCGACGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATCTCTGCGCCGCCAAGTCCGCCGGCTCGCCCCTATCTTCCCTGCTCGCTCGAGGGCAATGTCAGCTATTCAACAACACTGAGGCTAGGAGGAAAGTCATTGACACTGCCAGCGTTCTAGGGAAAACAACTGGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCT-AAAGGATGCCGTGGATTGTGGATGTTGTGTTGTATTGGCAAACAAGAAACCGCTTACTTGTGCTTATGAGGATTTCGAAAAGTTGGTCTCCAACTTCCGTCGCATAAGATTTGAATCTACTGTTGGAGCCAGTCTGCCTGTAATAGCTTCTGTGACTCGTATTATTGCCTCTGGAGATCCAGTTTCTCGTATTGTTGGCAGTCTGAGTGGTACACTTGGTTATGTGATGAGTGAGCTGGAGGATGGAAAGAAATTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAGGCATTGATCTTAGCTAGGCTTCTGGGGCAACAGATTAGCATGGAGAATATTAATGTTGAGAGTTTATACCCCAGTGAATTAGGACCTGATGCAATGTCCACAAAGGACTTCCTTGAAAGTGGTTTAGTACAGCTTGATAAAAGCATTGAAGAAAGAGTAAAGGCAGCATCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTGAGAGGAAGTGACAATGTGGTGGAGATATACAGCAGATGCTACGAGAGCGCCCCTCTGGTGATTCAGGGCGCTGGAGCTGGCAATGATACCACTGCAGCTGGAGTTCTTGCTGACATACTTGATCTCCAGGATCTCTTCCACAAAACGGCTTGAAATCTATGTCTTGTAGGTCGAACCGCAGAGTTGATTATGAGTCTTGTGACTTGTGGGGTTGTTTTGGTCACAGTATTACTTAAATAAATCTT--GAGCAG--ATATCAATTTTTGTACTGTACGCAGAAGGTTTTTGAACAAATTTGGAAGTTGGAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK071434             [GGCCGAATAGACGATTGAACAACAGGCCGAAGAAACCAAAAATGGTGTAGCCTGAAG  GTGAAGCTGTCA AGCACC  CAAATGGCGGCGCCGGTGAGGTCGGTCCTCCCCGTCGTCCTCCTCGGCTGCGGCGGCGTCGGCCGCCACCTTCTCCGCCACATCGTCTCCTGCCGCCCGCTCCACGCCAACCAGGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCGCCGACGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATCTCTGCGCCGCCAAGTCCGCCGGCTCGCCCCTATCTTCCCTGCTCGCTCGAGGGCAATGTCAGCTATTCAACAACACTGAGGCTAGGAGGAAAGTCATTGACACTGCCAGCGTTCTAGGGAAAACAACTGGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCT AAAGGATGCCGTGGATTGTGGATGTTGTGTTGTATTGGCAAACAAGAAACCGCTTACTTGTGCTTATGAGGATTTCGAAAAGTTGGTCTCCAACTTCCGTCGCATAAGATTTGAATCTACTGTTGGAGCCAGTCTGCCTGTAATAGCTTCTGTGACTCGTATTATTGCCTCTGGAGATCCAGTTTCTCGTATTGTTGGCAGTCTGAGTGGTACACTTGGTTATGTGATGAGTGAGCTGGAGGATGGAAAGAAGTTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAGGCATTGATCTTAGCTAGGCTTCTGGGGCAACAGATTAGCATGGAGAATATTAATGTTGAGAGTTTATACCCCAGTGAATTAGGACCTGATGCAATGTCCACAAAGGACTTCCTTGAAAGTGGTTTAGTACAGCTTGATAAAAGCATTGAAGAAAGAGTAAAGGCAGCATCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTGAGAGGAAGTGACAATGTGGTGGAGATATACAGCAGATGCTACGAGAGCGCCCCTCTGGTGATTCAGGGCGCTGGAGCTGGCAATGATACCACTGCAGCTGGAGTTCTTGCTGACATACTTGATCTCCAGGATCTCTTCCACAAAACGGCTTGAAATCTATGTCTTGTAGGTCGAACCGCAGAGTTGATTGTGAGTC  GTGACTTGTGGGGTTCTTTTGGTCACAGTATTACCTAAATAAATCTT  GAGCAGACATATCCATTTTTGTACTGTACGCAGAAGGTTTTTGAACAAATTTGGA                                                                  ]
[+] EMBL C26583               [                                                     GAAGCTGTGAAGC ACCAGTGCCCCAACAAATGGCGGCGCCGGTGAGGTCGGTGCTCCCCGTCGTGCTCCTCGGCTGCGGCGGCGTCGGCCGCANCCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAGGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCGCCGACGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATCTCTGCGCCGCCAAGTCCGCCGGCTCGCCCTTATCTTCTCTGCTCTCTCGAGGGCAATGTCAGCTATTCAACAACCCTGAGGCTAGGAGGAAAGTCATTGACACTGCCAGCGTTCTTGGGAAAACAACTGGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGNATGCTAAAAGGATGCCGTGGATCGTGGATGTTGTGTTGAATTGG AAANAAGAAACCGGTTACTTGTG TTATn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB681606             [                                                                                                                                TGCGCCTTCGTCGGCCGCCACCTTCTCCGCCACATCGTCTCCTGCCGCCCGCTCCACGCCAACCAGGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCGCCGACGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATCTCTGCGCCGCCAAGTCCGCCGGCTCGCCCCTATCTTCCCTGCTCGCTCGAGGGCAATGTCAGCTATTCAACAACACTGAGGCTAGGAGGAAAGTCATTGACACTGCCAGCGTTCTAGGGAAAACAACTGGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCT AAAGGATGCCGTGGATTGTGGATGTTGTGTTGTATTGGCAAACAAGAAACCGCTTACTTGTGCTTATGAGGATTTCGAAAAGTTGGTCTCCAACTTCCGTCGCATAAGATTTGAATCTACTGTTGGAGCCAGTCTGCCTGTAATAGCTTCTGTGACTCGTATTATTGCCTCTGGAGATCCAGTTTCTCGTATTGTTGGCAGTCTGAGTGGTACACTTGGTTATGTGATGAGTGAGCTGGAGGATGGAAAGAAATTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAGGCATTGATCTTAGCTAGGCTTCTGGGGCAACAGATTAGCATGGAGAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB681607             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GAATCTACTGTTGGAGCCAGTCTGCCTGTAATAGCTTCTGTGACTCGTATTATTGCCTCTGGAGATCCAGTTTCTCGTATTGTTGGCAGTCTGAGTGGTACACTTGGTTATGTGATGAGTGAGCTGGAGGATGGAAAGAAATTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAGGCATTGATCTTAGCTAGGCTTCTGGGGCAACAGATTAGCATGGAGAATATTAATGTTGAGAGTTTATACCCCAGTGAATTAGGACCTGATGCAATGTCCACAAAGGACTTCCTTGAAAGTGGTTTAGTACAGCTTGATAAAAGCATTGAAGAAAGAGTAAAGGCAGCATCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTGAGAGGAAGTGACAATGTGGTGGAGATATACAGCAGATGCTACGAGAGCGCCCCTCTGGTGATTCAGGGCGCTGGAGCTGGCAATGATACCACTGCAGCTGGAGTTCTTGCTGACATACTTGATCTCCAGGATCTCTTCCACAAAACGGCTTGAAATCTATGTCTTGTAGGTCGAACCGCAGAGTTGATTGTGAGTC  GTGACTTGTGGGGTTCTTTTGGTCACAGTATTACCTAAATAAATCTTAAGGGGAC  ATATCCATTTTTGTACTG                                                                                               ]
[-] EMBL AW070042             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    gccgaGGTACACTTGGTTATGTGATGAGTGAGCTGGAGGATGGAAAGAAATTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGATCCACGTGATGACCTCAGTGGGATGGACGTAGCTAGAAAGGCATTGATCTTAGCTAGGCTTCTGGGGCAACAGATTAGCATGGAGAATATTAATGTTGGGAGTTTATACCCCAGTGAATTAGGACATAATGCAATGTCCACAAAGGACTTCCTTGAAAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL AW069905             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    gccgaGGTACACTTGGTTATGTGATGAGTGAGCTGGAGGATGGAAAGAAATTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGACCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAGGCATTGATCTTAGCTAGGCTTCTGGGGCAACAGATTAGCATGGAGAATATTAATGTTGAGAGTTTATACCCCAGTGAATTAGGACCTGATGCAATGTCCACAAAGGACTTCCTTGAAAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU198063             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AGTAAAGGCAGCATCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTGAGAGGAAGTGACAATGTGGTGGAGATATACAGCAGATGCTACGAGAGCGCCCCTCTGGTGATTCAGGGCGCTGGAGCTGGCAATGATACCACTGCAGCTGGAGTTCTTGCTGACATACTTGATCTCCAGGATCTCTTCCACAAAACGGCTTGAAACCTATGTCTTNTAGGTCGAACCGCAGAGTTGATTATGAGTCTTGTGACTTGTGGGGTTGTTTTGGTCACAGTATTACTTAAATAAATCTT  GAGCAG  ATATCAATTTTTGTACTGTACGCAGAAGGTTTTTGAACAAATTTGGAAGTTGGAACCAAAAAAAAAAAA                                            ]
[+] EMBL AU095980             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GAGTTCTTGCTGACATACTTGATCTCCAGGATCTCTTCCNCAAAACGGCTTGAAACCTATGTCTTCTAGGTCGAACCNCAGAGTTGATTATGAGTCTTGTGACTTGTGGGGTTGTTTTGGTCNCAGTATTACTTAAATAAATCTT  GNGCAG  ATNTCAATTTTTGTACTGTACGCAGAAGGTTTTTGAACAAATTTGGAAGTTGGAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU100746             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tnTAGGTCGAACCGCAGAGTTGATTATGAGTCTTGTGACTTGTGGGGTTGTTTTGGTCACAGTATTACTTAAATAAATCTT  GAGCAG  ATATCAATTTTTGTACTGTACGCAGAAGGTTTTTGAANAAATTTGGAAGTTGGAACCAAAAAAAA                                                ]


>consensus_14226#0 GGCCGAATAGACGATTGAACAACAGGCCGAAGAAACCAAAAATGGTGTAGCCTGAAGGTG AAGCTGTCAAGCACCCAAATGGCGGCGCCGGTGAGGTCGGTCCTCCCCGTCGTCCTCCTC GGCTGCGGCGGCGTCGGCCGCCACCTTCTCCGCCACATCGTCTCCTGCCGCCCGCTCCAC GCCAACCAGGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTC GCCGACGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATCTCTGCGCCGCC AAGTCCGCCGGCTCGCCCCTATCTTCCCTGCTCGCTCGAGGGCAATGTCAGCTATTCAAC AACACTGAGGCTAGGAGGAAAGTCATTGACACTGCCAGCGTTCTAGGGAAAACAACTGGT CTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCTAAAGGATGCCGTG GATTGTGGATGTTGTGTTGTATTGGCAAACAAGAAACCGCTTACTTGTGCTTATGAGGAT TTCGAAAAGTTGGTCTCCAACTTCCGTCGCATAAGATTTGAATCTACTGTTGGAGCCAGT CTGCCTGTAATAGCTTCTGTGACTCGTATTATTGCCTCTGGAGATCCAGTTTCTCGTATT GTTGGCAGTCTGAGTGGTACACTTGGTTATGTGATGAGTGAGCTGGAGGATGGAAAGAAA TTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGATCCACGTGAT GATCTCAGTGGGATGGACGTAGCTAGAAAGGCATTGATCTTAGCTAGGCTTCTGGGGCAA CAGATTAGCATGGAGAATATTAATGTTGAGAGTTTATACCCCAGTGAATTAGGACCTGAT GCAATGTCCACAAAGGACTTCCTTGAAAGTGGTTTAGTACAGCTTGATAAAAGCATTGAA GAAAGAGTAAAGGCAGCATCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAA AGCACAGGGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTG AGAGGAAGTGACAATGTGGTGGAGATATACAGCAGATGCTACGAGAGCGCCCCTCTGGTG ATTCAGGGCGCTGGAGCTGGCAATGATACCACTGCAGCTGGAGTTCTTGCTGACATACTT GATCTCCAGGATCTCTTCCACAAAACGGCTTGAAATCTATGTCTTGTAGGTCGAACCGCA GAGTTGATTATGAGTCTTGTGACTTGTGGGGTTGTTTTGGTCACAGTATTACTTAAATAA ATCTTGAGCAGATATCAATTTTTGTACTGTACGCAGAAGGTTTTTGAACAAATTTGGAAG TTGGAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAA



consensusID : consensus_14226#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1377
fasta sequence
                              [GGGTGGTTAATTTGTTTTTGTTTTAGGTAATGCACATTTGTGTAGCCAACAAATGGCGGCGCCGGTGAGGTCGGTGCTCCCCGTCGTGCTCCTCGGCTGCGGCGGCGTCGGCCGCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAGGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCGCCGACGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATCTCTGCGCCGCCAAGTCCGCCGGCTCGCCCTTATCTTCTCTGCTCTCTCGAGGGCAATGTCAGCTATTCAACAACCCTGAGGCTAGGAGGAAAGTCATTGACACTGCCAGCGTTCTTGGGAAAACAACTGGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCTAAAGGATGCCGTGGATCGTGGATGTTGTGTTGTATTGGCAAACAAGAAACCGCTTACTTGTGCTTATGAGGATTTCGAAAAGTTGGTTTCCAACTTCCGTCGCATGAGATTTGAATCTACTGTTGGAGCCGGTTTGCCTGTAATAGCTTCTGTGACCCGTATTATTGCCTCTGGAGATCCAGTTTCTCGTATTGTTGGCAGTCTGAGTGGTACACTTGGTTATGTGATGAGTGAGCTGGAGGATGGAAAGAGA-TTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGATCCAC-GTGATGATCTCAGTGGGATGGACGTAGCTA-GAAAGGCATTGATCTTAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAATATTAATGTTGAGGGTTTATACCCCAGTGAATTTGGACCTGATGCAATGTCCACAAAGGACTTCCTTGAAAGTGGTTTAGTACAGCTTGATAAAAGCATTGAAGAAAGAGTAAAGGCAGCATCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTGAGAGGAAGTGACAATGTGGTGGAGATATACAGCAGATGCTACGAGAGCGCCCCTCTGGTGATTCAGGGCGCTGGAGCTGGCAATGATACCACTGCAGCTGGAGTTCTTGCTGACATACTTGATCTCCAGGATCTCTTCCACAAAACGGCTTGAAACCTATGTCTTCTAGGTCGAACCGCAGAGTTGATTATGAGTCTTGTGACTTGTGGGGTTGTTTTGGTCACAGTATTACTTAAATAAATCTTGAGCAGATATCAATTTTTGTACTGTACGCAGAAGGTTTTTGAACAAATTTGGAAGTTGGAACCAATGAGCAGTGACAT]

[+] EMBL AK062006             [GGGTGGTTAATTTGTTTTTGTTTTAGGTAATGCACATTTGTGTAGCCAACAAATGGCGGCGCCGGTGAGGTCGGTGCTCCCCGTCGTGCTCCTCGGCTGCGGCGGCGTCGGCCGCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAGGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCGCCGACGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATCTCTGCGCCGCCAAGTCCGCCGGCTCGCCCTTATCTTCTCTGCTCTCTCGAGGGCAATGTCAGCTATTCAACAACCCTGAGGCTAGGAGGAAAGTCATTGACACTGCCAGCGTTCTTGGGAAAACAACTGGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCTAAAGGATGCCGTGGATCGTGGATGTTGTGTTGTATTGGCAAACAAGAAACCGCTTACTTGTGCTTATGAGGATTTCGAAAAGTTGGTTTCCAACTTCCGTCGCATGAGATTTGAATCTACTGTTGGAGCCGGTTTGCCTGTAATAGCTTCTGTGACCCGTATTATTGCCTCTGGAGATCCAGTTTCTCGTATTGTTGGCAGTCTGAGTGGTACACTTGGTTATGTGATGAGTGAGCTGGAGGATGGAAAGAGA TTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGATCCAC GTGATGATCTCAGTGGGATGGACGTAGCTA GAAAGGCATTGATCTTAGCTAGGCTTCTGGGGCAGCGGATCAGCATGGAGAATATTAATGTTGAGGGTTTATACCCCAGTGAATTTGGACCTGATGCAATGTCCACAAAGGACTTCCTTGAAAGTGGTTTAGTACAGCTTGATAAAAGCATTGAAGAAAGAGTAAAGGCAGCATCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTGAGAGGAAGTGACAATGTGGTGGAGATATACAGCAGATGCTACGAGAGCGCCCCTCTGGTGATTCAGGGCGCTGGAGCTGGCAATGATACCACTGCAGCTGGAGTTCTTGCTGACATACTTGATCTCCAGGATCTCTTCCACAAAACGGCTTGAAACCTATGTCTTCTAGGTCGAACCGCAGAGTTGATTATGAGTCTTGTGACTTGTGGGGTTGTTTTGGTCACAGTATTACTTAAATAAATCTTGAGCAGATATCAATTTTTGTACTGTACGCAGAAGGTTTTTGAACAAATTTGGAAGTTGGAACCAATGAGCAGTGACAT]
[+] EMBL OSS15196A            [                                                                                                                                                                                                                                                                                                                                                                         GACACTGCCAGCGTTCTTGGGAAAACAACTGGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCTAAAGGATGCCGTGGATCGTGGATGTTGTGTTGTATTGGCAAACAAGAAACCGCTTACTTGTGCTTATGAGGATTTCGAAAAGTTGGTTTCCAACTTCCGTCGCATGAGATTTGAATCTACTGTTGGAGCCGGTTTGCCTGTAATAGCTTCTGTGACCCGTATTATTGCCTCTGGAGATCCAGTTTCTCGTATTGTTGGCAGTCTGAGTGGTACACTTGGTTATGTGATGAGTGAGCTGGAGGATGGAAAGAGA TTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGATCCACGGTGATGATCTCAGTGGGATGGACGGAGCTAGGAAGGGCATTGATCTTAGCTAGGCTTCTGGGGCAACGGNTCAACATGGNG ATAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU065815             [                                                                                                                                                                                                                                                                                                                                                                                                                                                          AAGGATGCCGTGGATCGTGGATGTTGTGTTGTATTGGCAAACAAGAAACCGCTTACTTGTGCTTATGAGGATTTCGAAAAGTTGGTTTCCAACTTCCGTCGCATGAGATTTGAATCTACTGTTGGAGCCGGTTTGCCTGTAATAGCTTCTGTGACCCGTATTATTGCCTCTGGAGATCCAGTTTCTCGTATTGTTGGCAGTCTGAGTGGTACACTTGGTTATGTGATGAGTGAGCTGGAGGATGGAAAGAGA TTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGATCCAC GTGATGATCTCAGTGGGATGGACGTAGCTA GAAAGGCA TGATC TAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL OSS11917A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                          AAGGATGCCGTGGATCGTGGATGTTGTGTTGTATTGGCAAACAAGAAACCGCTTACTTGTGCTTATGAGGATTTCGAAAAGTTGGTTTCCAACTTCCGTCGCATGANATTTGAATCTACTGNTGGAGCCGGTTTGCCTGTAATAGCTTCTGTGACCCGTATTATTGCCTCTGGAGATCCAGTTTCTCGTATTGTTGGCAGTCTGAGTGGTACA TTGGTTATGTGATGAGTGAGCTGGAGGATGGAAAGAGA TTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGATCCAC GTGATGATCTCAGTGGGATGGACGTAGCTA GAAAGGCATTGATCTTAGCTAGGCTTCTGGGGCAACGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU083467             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CTGAAGGATGGAAAGAGATTTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATNCAG ACCAGATCCAC GTGATGATCTCAGTGGGATGGACGTAGCTA GAAAGGCATTGATCTTAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAATATTAATGTTGAGAGTTTATACCCCAGTGAATTTGGACCTGATGCAATGTCCACAAAGGACTTCCTTGAAAGTGGTTTAGTACAGCTTGATAAAAGCATTGAAGAAAGAGTAAAGGCAGCATCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTGAGAGGAAGTGACAATGTGGTGGAGATATACAGCAGATGCTACGAGAGCGCCCCTCTGGTGATTCAGGGCGCTGGAGCTGGCAATGATACCACTGCAGCTGGAGTTCTTGCTGACATACTTGATCTCCAGGATCTCTTCCACAAAACGGCTTGAAACCTATGTCTTCTAGGTCGAACCGCAGAGTTGATTATGAGTCTTGTGACTTGTGGGGTTGTTTTGGTCACAGTATTACTTAAATAAATCTTGAGCAGATATCAATTTTTGTACTGTACGCAGAAGGTTTTTGAACAAAaa                             ]


>consensus_14226#1 GGGTGGTTAATTTGTTTTTGTTTTAGGTAATGCACATTTGTGTAGCCAACAAATGGCGGC GCCGGTGAGGTCGGTGCTCCCCGTCGTGCTCCTCGGCTGCGGCGGCGTCGGCCGCCACCT CCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAGGGCGTCGCCATCCGGGT GCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCGCCGACGACCTCCACTCCAACGGCTT CGACGACGCGCTCCTCGCTGATCTCTGCGCCGCCAAGTCCGCCGGCTCGCCCTTATCTTC TCTGCTCTCTCGAGGGCAATGTCAGCTATTCAACAACCCTGAGGCTAGGAGGAAAGTCAT TGACACTGCCAGCGTTCTTGGGAAAACAACTGGTCTTGTACTAGTTGATTGTTCTGCAAC TTATGATACTGTTGGCATGCTAAAGGATGCCGTGGATCGTGGATGTTGTGTTGTATTGGC AAACAAGAAACCGCTTACTTGTGCTTATGAGGATTTCGAAAAGTTGGTTTCCAACTTCCG TCGCATGAGATTTGAATCTACTGTTGGAGCCGGTTTGCCTGTAATAGCTTCTGTGACCCG TATTATTGCCTCTGGAGATCCAGTTTCTCGTATTGTTGGCAGTCTGAGTGGTACACTTGG TTATGTGATGAGTGAGCTGGAGGATGGAAAGAGATTTAGTGAAGTTGTGAAAACTGCCAA GTCTCTTGGCTATACAGAACCAGATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAG AAAGGCATTGATCTTAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAATATTAATGT TGAGGGTTTATACCCCAGTGAATTTGGACCTGATGCAATGTCCACAAAGGACTTCCTTGA AAGTGGTTTAGTACAGCTTGATAAAAGCATTGAAGAAAGAGTAAAGGCAGCATCTTTGAA AGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGGTGCCAAGTGGGCCTTGA AGAACTCCCGAAAAACTCTGCACTGGGAAGGTTGAGAGGAAGTGACAATGTGGTGGAGAT ATACAGCAGATGCTACGAGAGCGCCCCTCTGGTGATTCAGGGCGCTGGAGCTGGCAATGA TACCACTGCAGCTGGAGTTCTTGCTGACATACTTGATCTCCAGGATCTCTTCCACAAAAC GGCTTGAAACCTATGTCTTCTAGGTCGAACCGCAGAGTTGATTATGAGTCTTGTGACTTG TGGGGTTGTTTTGGTCACAGTATTACTTAAATAAATCTTGAGCAGATATCAATTTTTGTA CTGTACGCAGAAGGTTTTTGAACAAATTTGGAAGTTGGAACCAATGAGCAGTGACAT



consensusID : consensus_14226#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence
                              [TCCCCATCGTNCTCCNNGGCTGCNGCNGCGTCGCACCCNNNACTCNACCACATCCTCTCCTNCCGCCCTCNNCACNCCAACCANGGCTCGCATCCGGGTGCTCNGCGTCGCCNANGCTCCTCTCTGCTCGTCGCCGAGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATCTCTGCGCCGCCAAGTCCGCCGGCTCGCCTTATCTTCTCTGCTCTCTCGAGGGCAATGTCAGCTATTCAACAACCCTGAGGCTAGGAGGGAAAGTCATTGACACTTGCCAGCGTTCTTGGGGAAAACAACTNGGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCTTAAAGGTGCNGTGGATCGTGGGATGTTGTANTTTATTGGCAACAAGGAACCCGCTTAATTNGTGCTTATAGGGATTTCG]

[+] EMBL C99385               [TCCCCATCGTNCTCCNNGGCTGCNGCNGCGTCGCACCCNNNACTCNACCACATCCTCTCCTNCCGCCCTCNNCACNCCAACCANGGCTCGCATCCGGGTGCTCNGCGTCGCCNANGCTCCTCTCTGCTCGTCGCCGAGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATCTCTGCGCCGCCAAGTCCGCCGGCTCGCCTTATCTTCTCTGCTCTCTCGAGGGCAATGTCAGCTATTCAACAACCCTGAGGCTAGGAGGGAAAGTCATTGACACTTGCCAGCGTTCTTGGGGAAAACAACTNGGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCTTAAAGGTGCNGTGGATCGTGGGATGTTGTANTTTATTGGCAACAAGGAACCCGCTTAATTNGTGCTTATAGGGATTTCG]


>consensus_14226#2 TCCCCATCGTNCTCCNNGGCTGCNGCNGCGTCGCACCCNNNACTCNACCACATCCTCTCC TNCCGCCCTCNNCACNCCAACCANGGCTCGCATCCGGGTGCTCNGCGTCGCCNANGCTCC TCTCTGCTCGTCGCCGAGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATC TCTGCGCCGCCAAGTCCGCCGGCTCGCCTTATCTTCTCTGCTCTCTCGAGGGCAATGTCA GCTATTCAACAACCCTGAGGCTAGGAGGGAAAGTCATTGACACTTGCCAGCGTTCTTGGG GAAAACAACTNGGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGC TTAAAGGTGCNGTGGATCGTGGGATGTTGTANTTTATTGGCAACAAGGAACCCGCTTAAT TNGTGCTTATAGGGATTTCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14226#0      GGCCGAATAGACGATTGAACAACAGGCCGAAGAAACCAAAAATGGTGTAGCCTGAAGGTG 60
consensus_14226#1      ------------------------GGGTGGTTAATTTGTTTTTGTTTTAGGT--AATGCA 34
consensus_14226#2      ------------------------------------------------------------
                                                                                   

consensus_14226#0      AAGCTGTCAAGCACCCAAATGGCGGCGCCGGTGAGGTCGGTCCTCCCCGTCGTCCTCCTC 120
consensus_14226#1      CATTTGTGTAGCCAACAAATGGCGGCGCCGGTGAGGTCGGTGCTCCCCGTCGTGCTCCTC 94
consensus_14226#2      -------------------------------------------TCCCCATCGTNCTCCNN 17
                                                                  ***** **** ****  

consensus_14226#0      GGCTGCGGCGGCGTCGGCCGCCACCTTCTCCGCCACATCGTCTCCTGCCGCCCGCTCCAC 180
consensus_14226#1      GGCTGCGGCGGCGTCGGCCGCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCAC 154
consensus_14226#2      GGCTGCNGCNGCGTCG--CACCCNNNACTCNACCACATCCTCTCCTNCCGCCCTCNNCAC 75
                       ****** ** ******  * **     ***  ******* ****** ****** *  ***

consensus_14226#0      GCCAACCAGGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTC 240
consensus_14226#1      GCCAACCAGGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTC 214
consensus_14226#2      NCCAACCANGGC-TCGC-ATCCGGGTGCTCNGCGTCGCCNAN-GCTCCTCTCTGCTCGTC 132
                        ******* *** **** ************ ******** *  *****************

consensus_14226#0      GCCGACGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATCTCTGCGCCGCC 300
consensus_14226#1      GCCGACGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATCTCTGCGCCGCC 274
consensus_14226#2      GCCGA-GACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATCTCTGCGCCGCC 191
                       ***** ******************************************************

consensus_14226#0      AAGTCCGCCGGCTCGCCCCTATCTTCCCTGCTCGCTCGAGGGCAATGTCAGCTATTCAAC 360
consensus_14226#1      AAGTCCGCCGGCTCGCCCTTATCTTCTCTGCTCTCTCGAGGGCAATGTCAGCTATTCAAC 334
consensus_14226#2      AAGTCCGCCGGCTCGCC-TTATCTTCTCTGCTCTCTCGAGGGCAATGTCAGCTATTCAAC 250
                       *****************  ******* ****** **************************

consensus_14226#0      AACACTGAGGCTAGGAGG-AAAGTCATTGACACT-GCCAGCGTTCTAGGG-AAAACAACT 417
consensus_14226#1      AACCCTGAGGCTAGGAGG-AAAGTCATTGACACT-GCCAGCGTTCTTGGG-AAAACAACT 391
consensus_14226#2      AACCCTGAGGCTAGGAGGGAAAGTCATTGACACTTGCCAGCGTTCTTGGGGAAAACAACT 310
                       *** ************** *************** *********** *** *********

consensus_14226#0      GG-TCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCTAAAGGATGC 476
consensus_14226#1      GG-TCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCTAAAGGATGC 450
consensus_14226#2      NGGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCTTAAAGGTGC 370
                        * ************************************************ ** * ***

consensus_14226#0      CGTGGATTGTGG-ATGTTGTGTTGTATTGGCAAACAAGAAACCGCTTA-CTTGTGCTTAT 534
consensus_14226#1      CGTGGATCGTGG-ATGTTGTGTTGTATTGGCAAACAAGAAACCGCTTA-CTTGTGCTTAT 508
consensus_14226#2      NGTGGATCGTGGGATGTTGTANTTTATTGGCAACAAGGAACCCGCTTAATTNGTGCTTAT 430
                        ****** **** *******  * *********  * *** *******  * ********

consensus_14226#0      GAGGATTTCGAAAAGTTGGTCTCCAACTTCCGTCGCATAAGATTTGAATCTACTGTTGGA 594
consensus_14226#1      GAGGATTTCGAAAAGTTGGTTTCCAACTTCCGTCGCATGAGATTTGAATCTACTGTTGGA 568
consensus_14226#2      AGGGATTTCG-------------------------------------------------- 440
                         ********                                                  

consensus_14226#0      GCCAGTCTGCCTGTAATAGCTTCTGTGACTCGTATTATTGCCTCTGGAGATCCAGTTTCT 654
consensus_14226#1      GCCGGTTTGCCTGTAATAGCTTCTGTGACCCGTATTATTGCCTCTGGAGATCCAGTTTCT 628
consensus_14226#2      ------------------------------------------------------------
                                                                                   

consensus_14226#0      CGTATTGTTGGCAGTCTGAGTGGTACACTTGGTTATGTGATGAGTGAGCTGGAGGATGGA 714
consensus_14226#1      CGTATTGTTGGCAGTCTGAGTGGTACACTTGGTTATGTGATGAGTGAGCTGGAGGATGGA 688
consensus_14226#2      ------------------------------------------------------------
                                                                                   

consensus_14226#0      AAGAAATTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGATCCA 774
consensus_14226#1      AAGAGATTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGATCCA 748
consensus_14226#2      ------------------------------------------------------------
                                                                                   

consensus_14226#0      CGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAGGCATTGATCTTAGCTAGGCTTCTG 834
consensus_14226#1      CGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAGGCATTGATCTTAGCTAGGCTTCTG 808
consensus_14226#2      ------------------------------------------------------------
                                                                                   

consensus_14226#0      GGGCAACAGATTAGCATGGAGAATATTAATGTTGAGAGTTTATACCCCAGTGAATTAGGA 894
consensus_14226#1      GGGCAACGGATCAGCATGGAGAATATTAATGTTGAGGGTTTATACCCCAGTGAATTTGGA 868
consensus_14226#2      ------------------------------------------------------------
                                                                                   

consensus_14226#0      CCTGATGCAATGTCCACAAAGGACTTCCTTGAAAGTGGTTTAGTACAGCTTGATAAAAGC 954
consensus_14226#1      CCTGATGCAATGTCCACAAAGGACTTCCTTGAAAGTGGTTTAGTACAGCTTGATAAAAGC 928
consensus_14226#2      ------------------------------------------------------------
                                                                                   

consensus_14226#0      ATTGAAGAAAGAGTAAAGGCAGCATCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAG 1014
consensus_14226#1      ATTGAAGAAAGAGTAAAGGCAGCATCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAG 988
consensus_14226#2      ------------------------------------------------------------
                                                                                   

consensus_14226#0      ATTGAAAGCACAGGGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGA 1074
consensus_14226#1      ATTGAAAGCACAGGGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGA 1048
consensus_14226#2      ------------------------------------------------------------
                                                                                   

consensus_14226#0      AGGTTGAGAGGAAGTGACAATGTGGTGGAGATATACAGCAGATGCTACGAGAGCGCCCCT 1134
consensus_14226#1      AGGTTGAGAGGAAGTGACAATGTGGTGGAGATATACAGCAGATGCTACGAGAGCGCCCCT 1108
consensus_14226#2      ------------------------------------------------------------
                                                                                   

consensus_14226#0      CTGGTGATTCAGGGCGCTGGAGCTGGCAATGATACCACTGCAGCTGGAGTTCTTGCTGAC 1194
consensus_14226#1      CTGGTGATTCAGGGCGCTGGAGCTGGCAATGATACCACTGCAGCTGGAGTTCTTGCTGAC 1168
consensus_14226#2      ------------------------------------------------------------
                                                                                   

consensus_14226#0      ATACTTGATCTCCAGGATCTCTTCCACAAAACGGCTTGAAATCTATGTCTTGTAGGTCGA 1254
consensus_14226#1      ATACTTGATCTCCAGGATCTCTTCCACAAAACGGCTTGAAACCTATGTCTTCTAGGTCGA 1228
consensus_14226#2      ------------------------------------------------------------
                                                                                   

consensus_14226#0      ACCGCAGAGTTGATTATGAGTCTTGTGACTTGTGGGGTTGTTTTGGTCACAGTATTACTT 1314
consensus_14226#1      ACCGCAGAGTTGATTATGAGTCTTGTGACTTGTGGGGTTGTTTTGGTCACAGTATTACTT 1288
consensus_14226#2      ------------------------------------------------------------
                                                                                   

consensus_14226#0      AAATAAATCTTGAGCAGATATCAATTTTTGTACTGTACGCAGAAGGTTTTTGAACAAATT 1374
consensus_14226#1      AAATAAATCTTGAGCAGATATCAATTTTTGTACTGTACGCAGAAGGTTTTTGAACAAATT 1348
consensus_14226#2      ------------------------------------------------------------
                                                                                   

consensus_14226#0      TGGAAGTTGGAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1434
consensus_14226#1      TGGAAGTTGGAACCAATGAGCAGTGACAT------------------------------- 1377
consensus_14226#2      ------------------------------------------------------------
                                                                                   

consensus_14226#0      AAAAAAAAAA 1444
consensus_14226#1      ----------
consensus_14226#2      ----------
                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)