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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14226#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1444 fasta sequence
[GGCCGAATAGACGATTGAACAACAGGCCGAAGAAACCAAAAATGGTGTAGCCTGAAG--GTGAAGCTGTCA-AGCACC--CAAATGGCGGCGCCGGTGAGGTCGGTCCTCCCCGTCGTCCTCCTCGGCTGCGGCGGCGTCGGCCGCCACCTTCTCCGCCACATCGTCTCCTGCCGCCCGCTCCACGCCAACCAGGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCGCCGACGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATCTCTGCGCCGCCAAGTCCGCCGGCTCGCCCCTATCTTCCCTGCTCGCTCGAGGGCAATGTCAGCTATTCAACAACACTGAGGCTAGGAGGAAAGTCATTGACACTGCCAGCGTTCTAGGGAAAACAACTGGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCT-AAAGGATGCCGTGGATTGTGGATGTTGTGTTGTATTGGCAAACAAGAAACCGCTTACTTGTGCTTATGAGGATTTCGAAAAGTTGGTCTCCAACTTCCGTCGCATAAGATTTGAATCTACTGTTGGAGCCAGTCTGCCTGTAATAGCTTCTGTGACTCGTATTATTGCCTCTGGAGATCCAGTTTCTCGTATTGTTGGCAGTCTGAGTGGTACACTTGGTTATGTGATGAGTGAGCTGGAGGATGGAAAGAAATTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAGGCATTGATCTTAGCTAGGCTTCTGGGGCAACAGATTAGCATGGAGAATATTAATGTTGAGAGTTTATACCCCAGTGAATTAGGACCTGATGCAATGTCCACAAAGGACTTCCTTGAAAGTGGTTTAGTACAGCTTGATAAAAGCATTGAAGAAAGAGTAAAGGCAGCATCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTGAGAGGAAGTGACAATGTGGTGGAGATATACAGCAGATGCTACGAGAGCGCCCCTCTGGTGATTCAGGGCGCTGGAGCTGGCAATGATACCACTGCAGCTGGAGTTCTTGCTGACATACTTGATCTCCAGGATCTCTTCCACAAAACGGCTTGAAATCTATGTCTTGTAGGTCGAACCGCAGAGTTGATTATGAGTCTTGTGACTTGTGGGGTTGTTTTGGTCACAGTATTACTTAAATAAATCTT--GAGCAG--ATATCAATTTTTGTACTGTACGCAGAAGGTTTTTGAACAAATTTGGAAGTTGGAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK071434 [GGCCGAATAGACGATTGAACAACAGGCCGAAGAAACCAAAAATGGTGTAGCCTGAAG GTGAAGCTGTCA AGCACC CAAATGGCGGCGCCGGTGAGGTCGGTCCTCCCCGTCGTCCTCCTCGGCTGCGGCGGCGTCGGCCGCCACCTTCTCCGCCACATCGTCTCCTGCCGCCCGCTCCACGCCAACCAGGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCGCCGACGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATCTCTGCGCCGCCAAGTCCGCCGGCTCGCCCCTATCTTCCCTGCTCGCTCGAGGGCAATGTCAGCTATTCAACAACACTGAGGCTAGGAGGAAAGTCATTGACACTGCCAGCGTTCTAGGGAAAACAACTGGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCT AAAGGATGCCGTGGATTGTGGATGTTGTGTTGTATTGGCAAACAAGAAACCGCTTACTTGTGCTTATGAGGATTTCGAAAAGTTGGTCTCCAACTTCCGTCGCATAAGATTTGAATCTACTGTTGGAGCCAGTCTGCCTGTAATAGCTTCTGTGACTCGTATTATTGCCTCTGGAGATCCAGTTTCTCGTATTGTTGGCAGTCTGAGTGGTACACTTGGTTATGTGATGAGTGAGCTGGAGGATGGAAAGAAGTTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAGGCATTGATCTTAGCTAGGCTTCTGGGGCAACAGATTAGCATGGAGAATATTAATGTTGAGAGTTTATACCCCAGTGAATTAGGACCTGATGCAATGTCCACAAAGGACTTCCTTGAAAGTGGTTTAGTACAGCTTGATAAAAGCATTGAAGAAAGAGTAAAGGCAGCATCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTGAGAGGAAGTGACAATGTGGTGGAGATATACAGCAGATGCTACGAGAGCGCCCCTCTGGTGATTCAGGGCGCTGGAGCTGGCAATGATACCACTGCAGCTGGAGTTCTTGCTGACATACTTGATCTCCAGGATCTCTTCCACAAAACGGCTTGAAATCTATGTCTTGTAGGTCGAACCGCAGAGTTGATTGTGAGTC GTGACTTGTGGGGTTCTTTTGGTCACAGTATTACCTAAATAAATCTT GAGCAGACATATCCATTTTTGTACTGTACGCAGAAGGTTTTTGAACAAATTTGGA ]
[+] EMBL C26583 [ GAAGCTGTGAAGC ACCAGTGCCCCAACAAATGGCGGCGCCGGTGAGGTCGGTGCTCCCCGTCGTGCTCCTCGGCTGCGGCGGCGTCGGCCGCANCCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAGGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCGCCGACGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATCTCTGCGCCGCCAAGTCCGCCGGCTCGCCCTTATCTTCTCTGCTCTCTCGAGGGCAATGTCAGCTATTCAACAACCCTGAGGCTAGGAGGAAAGTCATTGACACTGCCAGCGTTCTTGGGAAAACAACTGGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGNATGCTAAAAGGATGCCGTGGATCGTGGATGTTGTGTTGAATTGG AAANAAGAAACCGGTTACTTGTG TTATn ]
[+] EMBL CB681606 [ TGCGCCTTCGTCGGCCGCCACCTTCTCCGCCACATCGTCTCCTGCCGCCCGCTCCACGCCAACCAGGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCGCCGACGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATCTCTGCGCCGCCAAGTCCGCCGGCTCGCCCCTATCTTCCCTGCTCGCTCGAGGGCAATGTCAGCTATTCAACAACACTGAGGCTAGGAGGAAAGTCATTGACACTGCCAGCGTTCTAGGGAAAACAACTGGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCT AAAGGATGCCGTGGATTGTGGATGTTGTGTTGTATTGGCAAACAAGAAACCGCTTACTTGTGCTTATGAGGATTTCGAAAAGTTGGTCTCCAACTTCCGTCGCATAAGATTTGAATCTACTGTTGGAGCCAGTCTGCCTGTAATAGCTTCTGTGACTCGTATTATTGCCTCTGGAGATCCAGTTTCTCGTATTGTTGGCAGTCTGAGTGGTACACTTGGTTATGTGATGAGTGAGCTGGAGGATGGAAAGAAATTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAGGCATTGATCTTAGCTAGGCTTCTGGGGCAACAGATTAGCATGGAGAAT ]
[-] EMBL CB681607 [ GAATCTACTGTTGGAGCCAGTCTGCCTGTAATAGCTTCTGTGACTCGTATTATTGCCTCTGGAGATCCAGTTTCTCGTATTGTTGGCAGTCTGAGTGGTACACTTGGTTATGTGATGAGTGAGCTGGAGGATGGAAAGAAATTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAGGCATTGATCTTAGCTAGGCTTCTGGGGCAACAGATTAGCATGGAGAATATTAATGTTGAGAGTTTATACCCCAGTGAATTAGGACCTGATGCAATGTCCACAAAGGACTTCCTTGAAAGTGGTTTAGTACAGCTTGATAAAAGCATTGAAGAAAGAGTAAAGGCAGCATCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTGAGAGGAAGTGACAATGTGGTGGAGATATACAGCAGATGCTACGAGAGCGCCCCTCTGGTGATTCAGGGCGCTGGAGCTGGCAATGATACCACTGCAGCTGGAGTTCTTGCTGACATACTTGATCTCCAGGATCTCTTCCACAAAACGGCTTGAAATCTATGTCTTGTAGGTCGAACCGCAGAGTTGATTGTGAGTC GTGACTTGTGGGGTTCTTTTGGTCACAGTATTACCTAAATAAATCTTAAGGGGAC ATATCCATTTTTGTACTG ]
[-] EMBL AW070042 [ gccgaGGTACACTTGGTTATGTGATGAGTGAGCTGGAGGATGGAAAGAAATTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGATCCACGTGATGACCTCAGTGGGATGGACGTAGCTAGAAAGGCATTGATCTTAGCTAGGCTTCTGGGGCAACAGATTAGCATGGAGAATATTAATGTTGGGAGTTTATACCCCAGTGAATTAGGACATAATGCAATGTCCACAAAGGACTTCCTTGAAAGT ]
[-] EMBL AW069905 [ gccgaGGTACACTTGGTTATGTGATGAGTGAGCTGGAGGATGGAAAGAAATTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGACCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAGGCATTGATCTTAGCTAGGCTTCTGGGGCAACAGATTAGCATGGAGAATATTAATGTTGAGAGTTTATACCCCAGTGAATTAGGACCTGATGCAATGTCCACAAAGGACTTCCTTGAAAGT ]
[+] EMBL AU198063 [ AGTAAAGGCAGCATCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTGAGAGGAAGTGACAATGTGGTGGAGATATACAGCAGATGCTACGAGAGCGCCCCTCTGGTGATTCAGGGCGCTGGAGCTGGCAATGATACCACTGCAGCTGGAGTTCTTGCTGACATACTTGATCTCCAGGATCTCTTCCACAAAACGGCTTGAAACCTATGTCTTNTAGGTCGAACCGCAGAGTTGATTATGAGTCTTGTGACTTGTGGGGTTGTTTTGGTCACAGTATTACTTAAATAAATCTT GAGCAG ATATCAATTTTTGTACTGTACGCAGAAGGTTTTTGAACAAATTTGGAAGTTGGAACCAAAAAAAAAAAA ]
[+] EMBL AU095980 [ GAGTTCTTGCTGACATACTTGATCTCCAGGATCTCTTCCNCAAAACGGCTTGAAACCTATGTCTTCTAGGTCGAACCNCAGAGTTGATTATGAGTCTTGTGACTTGTGGGGTTGTTTTGGTCNCAGTATTACTTAAATAAATCTT GNGCAG ATNTCAATTTTTGTACTGTACGCAGAAGGTTTTTGAACAAATTTGGAAGTTGGAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU100746 [ tnTAGGTCGAACCGCAGAGTTGATTATGAGTCTTGTGACTTGTGGGGTTGTTTTGGTCACAGTATTACTTAAATAAATCTT GAGCAG ATATCAATTTTTGTACTGTACGCAGAAGGTTTTTGAANAAATTTGGAAGTTGGAACCAAAAAAAA ]
consensusID : consensus_14226#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1377 fasta sequence
[GGGTGGTTAATTTGTTTTTGTTTTAGGTAATGCACATTTGTGTAGCCAACAAATGGCGGCGCCGGTGAGGTCGGTGCTCCCCGTCGTGCTCCTCGGCTGCGGCGGCGTCGGCCGCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAGGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCGCCGACGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATCTCTGCGCCGCCAAGTCCGCCGGCTCGCCCTTATCTTCTCTGCTCTCTCGAGGGCAATGTCAGCTATTCAACAACCCTGAGGCTAGGAGGAAAGTCATTGACACTGCCAGCGTTCTTGGGAAAACAACTGGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCTAAAGGATGCCGTGGATCGTGGATGTTGTGTTGTATTGGCAAACAAGAAACCGCTTACTTGTGCTTATGAGGATTTCGAAAAGTTGGTTTCCAACTTCCGTCGCATGAGATTTGAATCTACTGTTGGAGCCGGTTTGCCTGTAATAGCTTCTGTGACCCGTATTATTGCCTCTGGAGATCCAGTTTCTCGTATTGTTGGCAGTCTGAGTGGTACACTTGGTTATGTGATGAGTGAGCTGGAGGATGGAAAGAGA-TTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGATCCAC-GTGATGATCTCAGTGGGATGGACGTAGCTA-GAAAGGCATTGATCTTAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAATATTAATGTTGAGGGTTTATACCCCAGTGAATTTGGACCTGATGCAATGTCCACAAAGGACTTCCTTGAAAGTGGTTTAGTACAGCTTGATAAAAGCATTGAAGAAAGAGTAAAGGCAGCATCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTGAGAGGAAGTGACAATGTGGTGGAGATATACAGCAGATGCTACGAGAGCGCCCCTCTGGTGATTCAGGGCGCTGGAGCTGGCAATGATACCACTGCAGCTGGAGTTCTTGCTGACATACTTGATCTCCAGGATCTCTTCCACAAAACGGCTTGAAACCTATGTCTTCTAGGTCGAACCGCAGAGTTGATTATGAGTCTTGTGACTTGTGGGGTTGTTTTGGTCACAGTATTACTTAAATAAATCTTGAGCAGATATCAATTTTTGTACTGTACGCAGAAGGTTTTTGAACAAATTTGGAAGTTGGAACCAATGAGCAGTGACAT]
[+] EMBL AK062006 [GGGTGGTTAATTTGTTTTTGTTTTAGGTAATGCACATTTGTGTAGCCAACAAATGGCGGCGCCGGTGAGGTCGGTGCTCCCCGTCGTGCTCCTCGGCTGCGGCGGCGTCGGCCGCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCACGCCAACCAGGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTCGCCGACGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATCTCTGCGCCGCCAAGTCCGCCGGCTCGCCCTTATCTTCTCTGCTCTCTCGAGGGCAATGTCAGCTATTCAACAACCCTGAGGCTAGGAGGAAAGTCATTGACACTGCCAGCGTTCTTGGGAAAACAACTGGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCTAAAGGATGCCGTGGATCGTGGATGTTGTGTTGTATTGGCAAACAAGAAACCGCTTACTTGTGCTTATGAGGATTTCGAAAAGTTGGTTTCCAACTTCCGTCGCATGAGATTTGAATCTACTGTTGGAGCCGGTTTGCCTGTAATAGCTTCTGTGACCCGTATTATTGCCTCTGGAGATCCAGTTTCTCGTATTGTTGGCAGTCTGAGTGGTACACTTGGTTATGTGATGAGTGAGCTGGAGGATGGAAAGAGA TTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGATCCAC GTGATGATCTCAGTGGGATGGACGTAGCTA GAAAGGCATTGATCTTAGCTAGGCTTCTGGGGCAGCGGATCAGCATGGAGAATATTAATGTTGAGGGTTTATACCCCAGTGAATTTGGACCTGATGCAATGTCCACAAAGGACTTCCTTGAAAGTGGTTTAGTACAGCTTGATAAAAGCATTGAAGAAAGAGTAAAGGCAGCATCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTGAGAGGAAGTGACAATGTGGTGGAGATATACAGCAGATGCTACGAGAGCGCCCCTCTGGTGATTCAGGGCGCTGGAGCTGGCAATGATACCACTGCAGCTGGAGTTCTTGCTGACATACTTGATCTCCAGGATCTCTTCCACAAAACGGCTTGAAACCTATGTCTTCTAGGTCGAACCGCAGAGTTGATTATGAGTCTTGTGACTTGTGGGGTTGTTTTGGTCACAGTATTACTTAAATAAATCTTGAGCAGATATCAATTTTTGTACTGTACGCAGAAGGTTTTTGAACAAATTTGGAAGTTGGAACCAATGAGCAGTGACAT]
[+] EMBL OSS15196A [ GACACTGCCAGCGTTCTTGGGAAAACAACTGGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCTAAAGGATGCCGTGGATCGTGGATGTTGTGTTGTATTGGCAAACAAGAAACCGCTTACTTGTGCTTATGAGGATTTCGAAAAGTTGGTTTCCAACTTCCGTCGCATGAGATTTGAATCTACTGTTGGAGCCGGTTTGCCTGTAATAGCTTCTGTGACCCGTATTATTGCCTCTGGAGATCCAGTTTCTCGTATTGTTGGCAGTCTGAGTGGTACACTTGGTTATGTGATGAGTGAGCTGGAGGATGGAAAGAGA TTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGATCCACGGTGATGATCTCAGTGGGATGGACGGAGCTAGGAAGGGCATTGATCTTAGCTAGGCTTCTGGGGCAACGGNTCAACATGGNG ATAT ]
[+] EMBL AU065815 [ AAGGATGCCGTGGATCGTGGATGTTGTGTTGTATTGGCAAACAAGAAACCGCTTACTTGTGCTTATGAGGATTTCGAAAAGTTGGTTTCCAACTTCCGTCGCATGAGATTTGAATCTACTGTTGGAGCCGGTTTGCCTGTAATAGCTTCTGTGACCCGTATTATTGCCTCTGGAGATCCAGTTTCTCGTATTGTTGGCAGTCTGAGTGGTACACTTGGTTATGTGATGAGTGAGCTGGAGGATGGAAAGAGA TTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGATCCAC GTGATGATCTCAGTGGGATGGACGTAGCTA GAAAGGCA TGATC TAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAA ]
[+] EMBL OSS11917A [ AAGGATGCCGTGGATCGTGGATGTTGTGTTGTATTGGCAAACAAGAAACCGCTTACTTGTGCTTATGAGGATTTCGAAAAGTTGGTTTCCAACTTCCGTCGCATGANATTTGAATCTACTGNTGGAGCCGGTTTGCCTGTAATAGCTTCTGTGACCCGTATTATTGCCTCTGGAGATCCAGTTTCTCGTATTGTTGGCAGTCTGAGTGGTACA TTGGTTATGTGATGAGTGAGCTGGAGGATGGAAAGAGA TTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGATCCAC GTGATGATCTCAGTGGGATGGACGTAGCTA GAAAGGCATTGATCTTAGCTAGGCTTCTGGGGCAACGGA ]
[+] EMBL AU083467 [ CTGAAGGATGGAAAGAGATTTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATNCAG ACCAGATCCAC GTGATGATCTCAGTGGGATGGACGTAGCTA GAAAGGCATTGATCTTAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAATATTAATGTTGAGAGTTTATACCCCAGTGAATTTGGACCTGATGCAATGTCCACAAAGGACTTCCTTGAAAGTGGTTTAGTACAGCTTGATAAAAGCATTGAAGAAAGAGTAAAGGCAGCATCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTGAGAGGAAGTGACAATGTGGTGGAGATATACAGCAGATGCTACGAGAGCGCCCCTCTGGTGATTCAGGGCGCTGGAGCTGGCAATGATACCACTGCAGCTGGAGTTCTTGCTGACATACTTGATCTCCAGGATCTCTTCCACAAAACGGCTTGAAACCTATGTCTTCTAGGTCGAACCGCAGAGTTGATTATGAGTCTTGTGACTTGTGGGGTTGTTTTGGTCACAGTATTACTTAAATAAATCTTGAGCAGATATCAATTTTTGTACTGTACGCAGAAGGTTTTTGAACAAAaa ]
consensusID : consensus_14226#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence
[TCCCCATCGTNCTCCNNGGCTGCNGCNGCGTCGCACCCNNNACTCNACCACATCCTCTCCTNCCGCCCTCNNCACNCCAACCANGGCTCGCATCCGGGTGCTCNGCGTCGCCNANGCTCCTCTCTGCTCGTCGCCGAGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATCTCTGCGCCGCCAAGTCCGCCGGCTCGCCTTATCTTCTCTGCTCTCTCGAGGGCAATGTCAGCTATTCAACAACCCTGAGGCTAGGAGGGAAAGTCATTGACACTTGCCAGCGTTCTTGGGGAAAACAACTNGGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCTTAAAGGTGCNGTGGATCGTGGGATGTTGTANTTTATTGGCAACAAGGAACCCGCTTAATTNGTGCTTATAGGGATTTCG]
[+] EMBL C99385 [TCCCCATCGTNCTCCNNGGCTGCNGCNGCGTCGCACCCNNNACTCNACCACATCCTCTCCTNCCGCCCTCNNCACNCCAACCANGGCTCGCATCCGGGTGCTCNGCGTCGCCNANGCTCCTCTCTGCTCGTCGCCGAGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATCTCTGCGCCGCCAAGTCCGCCGGCTCGCCTTATCTTCTCTGCTCTCTCGAGGGCAATGTCAGCTATTCAACAACCCTGAGGCTAGGAGGGAAAGTCATTGACACTTGCCAGCGTTCTTGGGGAAAACAACTNGGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCTTAAAGGTGCNGTGGATCGTGGGATGTTGTANTTTATTGGCAACAAGGAACCCGCTTAATTNGTGCTTATAGGGATTTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14226#0 GGCCGAATAGACGATTGAACAACAGGCCGAAGAAACCAAAAATGGTGTAGCCTGAAGGTG 60
consensus_14226#1 ------------------------GGGTGGTTAATTTGTTTTTGTTTTAGGT--AATGCA 34
consensus_14226#2 ------------------------------------------------------------
consensus_14226#0 AAGCTGTCAAGCACCCAAATGGCGGCGCCGGTGAGGTCGGTCCTCCCCGTCGTCCTCCTC 120
consensus_14226#1 CATTTGTGTAGCCAACAAATGGCGGCGCCGGTGAGGTCGGTGCTCCCCGTCGTGCTCCTC 94
consensus_14226#2 -------------------------------------------TCCCCATCGTNCTCCNN 17
***** **** ****
consensus_14226#0 GGCTGCGGCGGCGTCGGCCGCCACCTTCTCCGCCACATCGTCTCCTGCCGCCCGCTCCAC 180
consensus_14226#1 GGCTGCGGCGGCGTCGGCCGCCACCTCCTCCGCCACATCCTCTCCTGCCGCCCTCTCCAC 154
consensus_14226#2 GGCTGCNGCNGCGTCG--CACCCNNNACTCNACCACATCCTCTCCTNCCGCCCTCNNCAC 75
****** ** ****** * ** *** ******* ****** ****** * ***
consensus_14226#0 GCCAACCAGGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTC 240
consensus_14226#1 GCCAACCAGGGCGTCGCCATCCGGGTGCTCGGCGTCGCCGACAGCTCCTCTCTGCTCGTC 214
consensus_14226#2 NCCAACCANGGC-TCGC-ATCCGGGTGCTCNGCGTCGCCNAN-GCTCCTCTCTGCTCGTC 132
******* *** **** ************ ******** * *****************
consensus_14226#0 GCCGACGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATCTCTGCGCCGCC 300
consensus_14226#1 GCCGACGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATCTCTGCGCCGCC 274
consensus_14226#2 GCCGA-GACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATCTCTGCGCCGCC 191
***** ******************************************************
consensus_14226#0 AAGTCCGCCGGCTCGCCCCTATCTTCCCTGCTCGCTCGAGGGCAATGTCAGCTATTCAAC 360
consensus_14226#1 AAGTCCGCCGGCTCGCCCTTATCTTCTCTGCTCTCTCGAGGGCAATGTCAGCTATTCAAC 334
consensus_14226#2 AAGTCCGCCGGCTCGCC-TTATCTTCTCTGCTCTCTCGAGGGCAATGTCAGCTATTCAAC 250
***************** ******* ****** **************************
consensus_14226#0 AACACTGAGGCTAGGAGG-AAAGTCATTGACACT-GCCAGCGTTCTAGGG-AAAACAACT 417
consensus_14226#1 AACCCTGAGGCTAGGAGG-AAAGTCATTGACACT-GCCAGCGTTCTTGGG-AAAACAACT 391
consensus_14226#2 AACCCTGAGGCTAGGAGGGAAAGTCATTGACACTTGCCAGCGTTCTTGGGGAAAACAACT 310
*** ************** *************** *********** *** *********
consensus_14226#0 GG-TCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCTAAAGGATGC 476
consensus_14226#1 GG-TCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCTAAAGGATGC 450
consensus_14226#2 NGGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCTTAAAGGTGC 370
* ************************************************ ** * ***
consensus_14226#0 CGTGGATTGTGG-ATGTTGTGTTGTATTGGCAAACAAGAAACCGCTTA-CTTGTGCTTAT 534
consensus_14226#1 CGTGGATCGTGG-ATGTTGTGTTGTATTGGCAAACAAGAAACCGCTTA-CTTGTGCTTAT 508
consensus_14226#2 NGTGGATCGTGGGATGTTGTANTTTATTGGCAACAAGGAACCCGCTTAATTNGTGCTTAT 430
****** **** ******* * ********* * *** ******* * ********
consensus_14226#0 GAGGATTTCGAAAAGTTGGTCTCCAACTTCCGTCGCATAAGATTTGAATCTACTGTTGGA 594
consensus_14226#1 GAGGATTTCGAAAAGTTGGTTTCCAACTTCCGTCGCATGAGATTTGAATCTACTGTTGGA 568
consensus_14226#2 AGGGATTTCG-------------------------------------------------- 440
********
consensus_14226#0 GCCAGTCTGCCTGTAATAGCTTCTGTGACTCGTATTATTGCCTCTGGAGATCCAGTTTCT 654
consensus_14226#1 GCCGGTTTGCCTGTAATAGCTTCTGTGACCCGTATTATTGCCTCTGGAGATCCAGTTTCT 628
consensus_14226#2 ------------------------------------------------------------
consensus_14226#0 CGTATTGTTGGCAGTCTGAGTGGTACACTTGGTTATGTGATGAGTGAGCTGGAGGATGGA 714
consensus_14226#1 CGTATTGTTGGCAGTCTGAGTGGTACACTTGGTTATGTGATGAGTGAGCTGGAGGATGGA 688
consensus_14226#2 ------------------------------------------------------------
consensus_14226#0 AAGAAATTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGATCCA 774
consensus_14226#1 AAGAGATTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGATCCA 748
consensus_14226#2 ------------------------------------------------------------
consensus_14226#0 CGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAGGCATTGATCTTAGCTAGGCTTCTG 834
consensus_14226#1 CGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAGGCATTGATCTTAGCTAGGCTTCTG 808
consensus_14226#2 ------------------------------------------------------------
consensus_14226#0 GGGCAACAGATTAGCATGGAGAATATTAATGTTGAGAGTTTATACCCCAGTGAATTAGGA 894
consensus_14226#1 GGGCAACGGATCAGCATGGAGAATATTAATGTTGAGGGTTTATACCCCAGTGAATTTGGA 868
consensus_14226#2 ------------------------------------------------------------
consensus_14226#0 CCTGATGCAATGTCCACAAAGGACTTCCTTGAAAGTGGTTTAGTACAGCTTGATAAAAGC 954
consensus_14226#1 CCTGATGCAATGTCCACAAAGGACTTCCTTGAAAGTGGTTTAGTACAGCTTGATAAAAGC 928
consensus_14226#2 ------------------------------------------------------------
consensus_14226#0 ATTGAAGAAAGAGTAAAGGCAGCATCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAG 1014
consensus_14226#1 ATTGAAGAAAGAGTAAAGGCAGCATCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAG 988
consensus_14226#2 ------------------------------------------------------------
consensus_14226#0 ATTGAAAGCACAGGGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGA 1074
consensus_14226#1 ATTGAAAGCACAGGGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGA 1048
consensus_14226#2 ------------------------------------------------------------
consensus_14226#0 AGGTTGAGAGGAAGTGACAATGTGGTGGAGATATACAGCAGATGCTACGAGAGCGCCCCT 1134
consensus_14226#1 AGGTTGAGAGGAAGTGACAATGTGGTGGAGATATACAGCAGATGCTACGAGAGCGCCCCT 1108
consensus_14226#2 ------------------------------------------------------------
consensus_14226#0 CTGGTGATTCAGGGCGCTGGAGCTGGCAATGATACCACTGCAGCTGGAGTTCTTGCTGAC 1194
consensus_14226#1 CTGGTGATTCAGGGCGCTGGAGCTGGCAATGATACCACTGCAGCTGGAGTTCTTGCTGAC 1168
consensus_14226#2 ------------------------------------------------------------
consensus_14226#0 ATACTTGATCTCCAGGATCTCTTCCACAAAACGGCTTGAAATCTATGTCTTGTAGGTCGA 1254
consensus_14226#1 ATACTTGATCTCCAGGATCTCTTCCACAAAACGGCTTGAAACCTATGTCTTCTAGGTCGA 1228
consensus_14226#2 ------------------------------------------------------------
consensus_14226#0 ACCGCAGAGTTGATTATGAGTCTTGTGACTTGTGGGGTTGTTTTGGTCACAGTATTACTT 1314
consensus_14226#1 ACCGCAGAGTTGATTATGAGTCTTGTGACTTGTGGGGTTGTTTTGGTCACAGTATTACTT 1288
consensus_14226#2 ------------------------------------------------------------
consensus_14226#0 AAATAAATCTTGAGCAGATATCAATTTTTGTACTGTACGCAGAAGGTTTTTGAACAAATT 1374
consensus_14226#1 AAATAAATCTTGAGCAGATATCAATTTTTGTACTGTACGCAGAAGGTTTTTGAACAAATT 1348
consensus_14226#2 ------------------------------------------------------------
consensus_14226#0 TGGAAGTTGGAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1434
consensus_14226#1 TGGAAGTTGGAACCAATGAGCAGTGACAT------------------------------- 1377
consensus_14226#2 ------------------------------------------------------------
consensus_14226#0 AAAAAAAAAA 1444
consensus_14226#1 ----------
consensus_14226#2 ----------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||