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Oryza sativa
cluster # 14235 cluster # 14235       Sequences # 15       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14235#0 length = 696 sequences # 7  
consensus_14235#1 length = 675 sequences # 6  
consensus_14235#2 length = 608 sequences # 1  
consensus_14235#3 length = 281 sequences # 1  

consensusID : consensus_14235#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 696
fasta sequence
                              [TCCACACCAATTACACTCAAGAAAAACAGCGCTAATGGCCCAGAACAAGACCATTGCGGTGGCCCTGCTCCTTGCCACCCTTGTGGCGGTCATGGGAAAGGAGCCAGAGACGCTAGAGGAGGCAGTGAGAGCTGGGTGCAAAGAGGAATGCAGTGAGCAGAAAAAGAAAGCCCCCATCGACGAGAAACAATGTGAAGACTTCTGCTTCATCAAGACCAAGTCTATATTTGAGGCCCATAAGGGAGTGAAGGATCTAAAGGCGGATAGATTCATAGATTTTTGCAACAATGAGTGTAATGCAGTATATAAGGAGGATCCCGCCACAAGCAAGAAGTG-TGCAGAAAGTTGCGAAGCTG-ATGCTAAGGAGGCCGAGGTATTCCTTGATAAAGTCGTCGCTTATATTCAAACAACGAAACAAGCATGATTATATTATGTAGTACCTCCCCATCTGTTCCTTCATCATGACCGAGCGACGACATTATTAATGGTTCTCACCCAACGGCCAGCCCTGCATTACATTGTCATGTTTATTCCTTTTACCTTTTAAGTTGTTTCCTTTTGTTGAAGTTTATAACTTCCGAGTGATTGATTTGGTATGTCGTTCTTCCCAATATTACGGGAGACATATGTAATAATATTTCAATTGATGATTAAATAAATCTAGAGGTGTTTGGGCTTTTAAAAAAAAAAAAAAAA]

[+] EMBL AK120999             [TCCACACCAATTACACTCAAGAAAAACAGCGCTAATGGCCCAGAACAAGACCATTGCGGTGGCCCTGCTCCTTGCCACCCTTGTGGCGGTCATGGGAAAGGAGCCAGAGACGCTAGAGGAGGCAGTGAGAGCTGGGTGCAAAGAGGAATGCAGTGAGCAGAAAAAGAAAGCCCCCATCGACGAGAAACAATGTGAAGACTTCTGCTTCATCAAGACCAAGTCTATATTTGAGGCCCATAAGGGAGTGAAGGATCTAAAGGCGGATAGATTCATAGATTTTTGCAACAATGAGTGTAATGCAGTATATAAGGAGGATCCCGCCACAAGCAAGAAGTG TGCAGAAAGTTGCGAAGCTG ATGCTAAGGAGGCCGAGGTATTCCTTGATAAAGTCGTCGCTTATATTCAAACAACGAAACAAGCATGATTATATTATGTAGTACCTCCCCATCTGTTCCTTCATCATGACCGAGCGACGACATTATTAATGGTTCTCACCCAACGGCCAGCCCTGCATTACATTGTCATGTTTATTCCTTTTACCTTTTAAGTTGTTTCCTTTTGTTGAAGTTTATAACTTCCGAGTGATTGATTTGGTATGTCGTTCTTCCCAATATTACGGGAGACATATGTAATAATATTTCAATTGATGATTAAATAAATCTAGAGGTGTTTG                       ]
[+] EMBL AU094275             [           gggtccaAAGAAAACCAGCGCTAATGGCCCAGACCAAGACCATTGCGGTGGCCCTGCTCCTTGCCACCCTTGTGGCGGTCATGGGAAAGGAGCCAGAGACGCTAGAGGAGGCAGTGAGAGCTGGGTGCAAAGAGGAATGCAGTGAGCGGAAAAAGAAAGCCCCCATCGACGAGAAACAATGTGAAGACTTCTGCTTCATCAAGACCAAGTCTATATTTGAGGCCCATAAGGGAGTGAAGGATCTAAAGGCGGATAGATTCATAGATTTTTGCAACAATGAGTGTAATGCAGTATATAAGGAGGATCCCGCCACAAGCAAGAAGTG TGCAGAAAGTTGCGAAGCTG ATGCTAAGGAGGCCGAGGTATTCCTTGATAAAGTCGTCGCTTATATTCAAACAACGAAACAAGCATGATTATATTATGTAGTACCTCCCCATCTGTTCCTTCATCATGACCGAGCGACGACATTATTAATGGTTCTCACCCAACGGCCAGCCCTGCATTACATTGTCATGTTTATTCCTTTTACCTTTTAAGTTGTTTCCTTTTGTTGAAGTTTATAACTTCCGAGTGATTGATTTGGTATGTCGTTCTTCCCAATATTACGGGAGACATATGTAATAATATTTCAATTGATGATTAAATAAATCCAGAGGTGTTTGGGCTTTTAAAAAAAAAAAAAAAA]
[+] EMBL AU064681             [                        AACAGCGCTAATGGCCCAGAACAAGACCATTGCGGTGGCCCTGCTCCTTGCCACCCTTGTGGCGGTCATGGGAAAGGAGCCAGAGACGCTAGAGGAGGCAGTGAGAGCTGGGTGCAAAGAGGAATGCAGTGAGCAGAAAAAGAAAGCCCCCATCGACGAGAAACAATGTGAAGACTTCTGCTTCATCAAGACCAAGTCTATATTTGAGGCCCATAAGGGAGTGAAGGATCTAAAGGCGGATAGATTCATAGATTTTTGCAACAATGAGTGTAATGCAGTATATAAGGAGGATCCCGCCACAAGCAAGAAGTG TGCAGAAAGTTGCG AGTTGAATGCTAAGGAGGCCGAGGTATTCCTTGATAAAGTCGTCG TTATATTC AAC ACGGAACAAGCATG TTATATTATGTAGTACCT CCCATCTGTTCCTT ATCATGNCCngcgc                                                                                                                                                                                                                                ]
[+] EMBL AU065038             [                        AACAGCGCTAATGGCCCAGAACAAGACCATTGCGGTGGCCCTGCTCCTTGCCACCCTTGTGGCGGTCATGGGAAAGGAGCCAGAGACGCTAGAGGAGGCAGTGAGAGCTGGGTGCAAAGAGGAATGCAGTGAGCAGAAAAAGAAAGCCCCCATCGACGAGAAACAATGTGAAGACTTCTGCTTCATCAAGACCAAGTCTATATTTGAGGCCCATAAGGGAGTGAAGGATCTAAAGGCGGATAGATTCATAGATTTTTGCAACAATGAGTGTAATGCAGTATATAAGGAGGATCCCGCCACAAGCAAGAAGTG TGCAGAAAGTTGCG AGTTG ATGCTAAGGAGGCCGAGGTATTCCTTGATAAAGTCGTCG TTATATTCAAACAACGGAACAAGCATGATTATATTATGTAGTACCTCCCCATCTGTTCCTTCATCATGACC                                                                                                                                                                                                                                     ]
[+] EMBL AU064049             [                        AACAGCGCTAATGGCCCAGAACAAGACCATTGCGGTGGCCCTGCTCCTTGCCACCCTTGTGGCGGTCATGGGAAAGGAGCCAGAGACGCTAGAGGAGGCAGTGAGAGCTGGGTGCAAAGAGGAATGCAGTNAGCAGAAAAAGAAAGCCCCCATCGACGAGAAACAATGTGAAGACTTCTGCTTCATCAAGACCAAGTCTATATTTNAGGCCCATAAGGGAGTNAAGGNTCTAAAGGCGGATAGATTCATAGATTTTTGCAACAATGAGTGTAATGCAGTATATAAGGAGGATCCCGNCACAAGCAAGAAGTGTTGCA                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU064062             [                        AACAGCGCTAATGGCCCAGAACAAGACCATTGCGGTGGCCCTGCTCCTTGCCACCCTTGTGGGNGTCATGGGAAAGGAGCCAGAGACGCTAGAGGAGGCAGTGAGAGCTGGGTGCAAAGAGGAATGCAGTGAGCAGAAAAAGAAAGCCCCCATCGACGAGAAACAATGTGAAGACTTCTGCTTCATCAAGACCAAGTCTATATTTNAGGCCCATAAGGGAGTGANGGTTCTAAAGGCGGATAGATT                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL C98988               [                           AGCGCTAATGGCCCAGAACAAGACCATTGCGGTGGCCCTGCTCCTTGCCACCCTTGTGGCGGTCATGGGAAAGGAGCCAGAGACGCTAGAGGAGGCAGTGAGAGCTGGGTGCAAAGAGGAATGCAGTNAGCGGAAAAAGAAAGCCCCCATCGACGAGAAACAATGTGAAGACTTCTGCTTCATCAAGACCAAGTCTATATTTNAGGCCCATAAGGGAGTNAAGGATCTAAAGGCGGATAGATTCATAGATTTTTGCAACAATGAGTGTAATGCAGTATATAAGGAGGAT                                                                                                                                                                                                                                                                                                                                                                                              ]


>consensus_14235#0 TCCACACCAATTACACTCAAGAAAAACAGCGCTAATGGCCCAGAACAAGACCATTGCGGT GGCCCTGCTCCTTGCCACCCTTGTGGCGGTCATGGGAAAGGAGCCAGAGACGCTAGAGGA GGCAGTGAGAGCTGGGTGCAAAGAGGAATGCAGTGAGCAGAAAAAGAAAGCCCCCATCGA CGAGAAACAATGTGAAGACTTCTGCTTCATCAAGACCAAGTCTATATTTGAGGCCCATAA GGGAGTGAAGGATCTAAAGGCGGATAGATTCATAGATTTTTGCAACAATGAGTGTAATGC AGTATATAAGGAGGATCCCGCCACAAGCAAGAAGTGTGCAGAAAGTTGCGAAGCTGATGC TAAGGAGGCCGAGGTATTCCTTGATAAAGTCGTCGCTTATATTCAAACAACGAAACAAGC ATGATTATATTATGTAGTACCTCCCCATCTGTTCCTTCATCATGACCGAGCGACGACATT ATTAATGGTTCTCACCCAACGGCCAGCCCTGCATTACATTGTCATGTTTATTCCTTTTAC CTTTTAAGTTGTTTCCTTTTGTTGAAGTTTATAACTTCCGAGTGATTGATTTGGTATGTC GTTCTTCCCAATATTACGGGAGACATATGTAATAATATTTCAATTGATGATTAAATAAAT CTAGAGGTGTTTGGGCTTTTAAAAAAAAAAAAAAAA



consensusID : consensus_14235#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 675
fasta sequence
                              [GAGNTCGACCCAGCGTCCGCTCAAGAAAACCAGCGCTAATGG-CCCAGACCAAGACCATTGC-GGTGGCCCTGCTCCTTGCCACCCTTGTGGCGGTCATGGGAAAGGAGCCAGAGACGCTAGAGGAGGCAGTGAGAGCTGGGTGCAAAGAGGAATGCAGTGAGCAGAAAAAGAAAGCCCCCATCGACGAGAAACAATGTGAAGACTTCTGCTTCATCAAGACCAAGTCTATATTTGAGGCCCATAAGGGAGTGAAGGATCTAAAGGCGGATAGATTCATAGATTTTTGCAACAATGAGTGTAATGCAGTATATAAGGAGGATCCCGCCACAAGCAAGAAGTGTGCAGAAAGTTGCGAAGCTGATGCTAAGGAGGCCGAGGTATTCCTTGATAAAGTCGTCGCTTATATTCAAACAACGAAACAAGCATGATTATATTATGTAGTACCTCCCCATCT-GTTCCTTCATCATGACCGAGCGACGACATTATTAATGGTTCTCACCCAACGGCCAGCCCTGCATTACATTGTCATGTTTATTCCTTTTA-CCTTTTAAG-TTGTTT--CCTTTTGTTGAAGTTTATAACTT-CCGAGTGATTGATTTGGTATGTCGTTCTTCCCAATATTACGGGAGACATATGTAATAATATTTCAATTGATGATTAAATAAATCTAGAAAAAAA]

[+] EMBL AU094968             [GAGNTCGACCCAGCGTCCGCTCAAGAAAAACAGCGCTAATGC CCCAGAACAAGACCATTGC GNTGGCCCTGCTCCTTGCCACCCTTGTGGCGGTCATGGGAAAGGAGCCAGAGACGCTAGAGGAGGCAGTGAGAGCTGGGTGCAAAGAGGAATGCAGTGAGCAGAAAAAGAAAGCCCCCATCGACGAGAAACAATGTGAAGACTTCTGCTTCATCAAGACCAAGTCTATATTTGAGGCCCATAAGGGAGTGAAGGATCTAAAGGCGGATAGATTCATAGATTTTTGCAACAATGAGTGTAATGCAGTATATAAGGAGGATCCCGCCACAAGCAAGAAGTGTGCAGAAAGTTGCGAAGCTGATGCTAAGGAGGCCGAGGTATTCCTTGATAAAGTCGTCGCTTATATTCAAACAACGAAACAAGCATGATTATATTATGTAGTACCTCCCCATCT GTTCCTTCATCATGACCGAGCGACGACATTATTAATGGTTCTCACCCAACGGCCAGCCCTGCATTACATTGTCATGTTTATTCCTTTTA CCTTTTAAG TTGTTT  CCTTTTGTTGAAGTTTATAACTT CCGAGTGATTGATTTGGTATGTCGTTCTTCCCAATATTACGGGAGACATATGTAATAATATTTCAATTGATGATTAAATAAATCTAGAAAAAAA]
[+] EMBL AU165755             [                      AAGAAAACCAGCGCTAATGG CCCAGACCAAGACCATTGC GGTGGCCNTGCTCCTTGCCACCCTTGTGCCGGTCATGGGAAAGGAGCCAGAGACGCTAGAGGAGGCAGTGAGAGCTGGGTGCAAAGAGGAATGCAGTGAGCAGAAAAAGAAAGCCCCCATCGACGAGAAACAATGTGAAGACTTCTGCTTCATCAAGACCAAGTCTATATTTGAGGCCCATAAGGGAGTGAAGGATCTAAAGGCGGATAGATTCATAGATTTTTGCAACAATGAGTGTAATGCAGTATATAAGGAGGATCCCGCCACAAGCAAGAAGTGTGCAGAAAGTTGCGAAGCTGATGCTAAGGAGGCCGAGGTATTCCTTGATAAAGTCGTCGCTTATATTCAAACAACGAAACAAGCATGATTATATTATGTAGTACCTCCCCATCT GTTCCTTCATCATGACCGAGCGACGACATTATTAATGGTTCTCACCCAACGGCCAGCCCTGCATTACATTGTCATGTTTATTCCTTTTA CCTTTTAAG TTGTTT  CCTTTTGTTGAAGTTTATAACTT CCGAGTGATTGATTTGGTATGTCGTTCTTCCCAATATTACGGGAGACATATGTAATAATATTTCAATTGATGATTAAATAAATCTAGAAAAAAA]
[+] EMBL AU094194             [                            ACCAGCGCTAATGG CCCAGACCAAGACCATTGC GGTGGCCCTGCTCCTTGCCACCCTTGTGGCGGTCATGGGAAAGGAGCCAGAGACGCTAGAGGAGGCAGTGAGAGCTGGGTGCAAAGAGGAATGCAGTGAGCAGAAAAAGAAAGCCCCCATCGACGAGAAACAATGTGAAGACTTCTGCTTCATCAAGACCAAGTCTATATTTGAGGCCCATAAGGGAGTGAAGGATCTAAAGGCGGATAGATTCATAGATTTTTGCAACAATGAGTGTAATGCAGTATATAAGGAGGATCCCGCCACAAGCAAGAAGTGTGCAGAAAGTTGCGAAGCTGATGCTAAGGAGGCCGAGGTATTCCTTGATAAAGTCGTCGCTTATATTCAAACAACGAAACAAGCATGATTATATTATGTAGTACCTCCCCATCT GTTCCTTCATCATGACCGAGCGACGACATTATTAATGGTTCTCACCCAACGGCCAGCCCTGCATTACATTGTCATGTTTATTCCTTTTA CCTTTTAAG TTGTTT  CCTTTTGTTGAAGTTTATAACTT CCGAGTGATTGATTTGGTATGTCGTTCTTCCCAATATTACGGGAGACATATGTAATAATATTTCAATTGATGATTAAATAAATCTAGAAAAAAA]
[+] EMBL AU094175             [                             CCAGCGCTAATGGCCCCAGACCAAGACCATTGCGGGTGGCCNTGCTCCTTGCCACCCTTGTGCCGGTCATGGGAAAGGAGCCAGAGACGCTAGAGGAGGCAGTGAGAGCTGGGTGCAAAGAGGAATGCAGTGAGCAGAAAAAGAAAGCCCCCATCGACGAGAAACAATGTGAAGACTTCTGCTTCATCAAGACCAAGTCTATATTTGAGGCCCATAAGGGAGTGAAGGATCTAAAGGCGGATAGATTCATAGATTTTTGCAACAATGAGTGTAATGCAGTATATAAGGAGGATCCCGCCACAAGCAAGAAGTGTGCAGAAAGTTGCGAAGCTGATGCTAAGGAGGCCGAGGTATTCCTTGATAAAGTCGTCGCTTATATTCAAACAACGAAACAAGCATGATTATATTATGTAGTACCTCCCCATCT GTTCCTTCATCATGACCGAGCGACGACATTATTAATGGTTCTCACCCAACGGCCAGCCCTGCATTACATTGTCATGTTTATTCCTTTTA CCTTTTAAG TTGTTT  CCTTTTGTTGAAGTTTATAACTT CCGAGTGATTGATTTGGTATGTCGTTCTTCCCAATATTACGGGAGACATATGTAATAATATTTCAATTGATGATTAAATAAAaa          ]
[+] EMBL AU182902             [                                                                                                                                                                                                                                                CCATAAGGGAGTGAAGGATCTAAAGGCGGATAGATTCATAGATTTTTGCAACAATGAGTGTAATGCAGTATATAAGGAGGATCCCGCCACAAGCAAGAAGTGTGCAGAAAGTTGCGAAGCTGATGCTAAGGAGGCCGAGGTATTCCTTGATAAAGTCGTCGCTTATATTCAAACAACGAAACAAGCATGATTATATTATGTAGTACCTCCCCATCTANTTCCTTCATCATGACCGAGCGACGACATTATTAATGGTTCTCACCCAACGGCCAGCCCTGCATTACATTGTCATGTTTATTCCTTTTA CCTTTTAAG TTGTTT  CCTTTTGTTGAAGTTTATAACTT CCGAGTGATTGATTTGGTATGTCGTTCTTCCCAATATTACGGGAGACATATGTAATAATATTTCAATTGATGATTAAATAAAaa          ]
[+] EMBL AA750102             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CATCT GTTCCTTCATCATGACCGAGCGACGACATTATTAATGGTTCTCACCCAACGGCCAGCCCTGCATTACATTGT ATGTTTATTCCTTTTAGCCTTTTAAGCTTGTTTAGCCTTTTGTTGAAGTTTATAACTTACCGAGTGA                                                                                      ]


>consensus_14235#1 GAGNTCGACCCAGCGTCCGCTCAAGAAAACCAGCGCTAATGGCCCAGACCAAGACCATTG CGGTGGCCCTGCTCCTTGCCACCCTTGTGGCGGTCATGGGAAAGGAGCCAGAGACGCTAG AGGAGGCAGTGAGAGCTGGGTGCAAAGAGGAATGCAGTGAGCAGAAAAAGAAAGCCCCCA TCGACGAGAAACAATGTGAAGACTTCTGCTTCATCAAGACCAAGTCTATATTTGAGGCCC ATAAGGGAGTGAAGGATCTAAAGGCGGATAGATTCATAGATTTTTGCAACAATGAGTGTA ATGCAGTATATAAGGAGGATCCCGCCACAAGCAAGAAGTGTGCAGAAAGTTGCGAAGCTG ATGCTAAGGAGGCCGAGGTATTCCTTGATAAAGTCGTCGCTTATATTCAAACAACGAAAC AAGCATGATTATATTATGTAGTACCTCCCCATCTGTTCCTTCATCATGACCGAGCGACGA CATTATTAATGGTTCTCACCCAACGGCCAGCCCTGCATTACATTGTCATGTTTATTCCTT TTACCTTTTAAGTTGTTTCCTTTTGTTGAAGTTTATAACTTCCGAGTGATTGATTTGGTA TGTCGTTCTTCCCAATATTACGGGAGACATATGTAATAATATTTCAATTGATGATTAAAT AAATCTAGAAAAAAA



consensusID : consensus_14235#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 608
fasta sequence
                              [AGAGGACGAGACAAGGGGGATCTTTGTTCCACACCAATTACACTCAAGAAAAACAGCGCTAATGGCCCAGAACAAGACCATTGCGGTGGCCCTGCTCCTTGCCACCCTTGTGGCGGTCATGGGAAAGGAGCCAGAGACGCTAGAGGAGACACTGAGAGCTGGGTGCAAAGAGGAATGCAGTGAGCAGAAAAAGAAAGCCCCCATCGACGAGAAACAATGTGAAGACTTCTGCTTCATCAAGACCAAGTCTATATTTGAGGCCCATAAGGGAGTGAAGGATCTAAAGGCGGATAGATTCATAGATTTTTGCAACAATGAGTGTAATGCAGTATATAAGGAGGATCCCGCCACAAGCAAGAAGTGTGCAGAAAGTTGCGAAGCTGATGCTAAGGAGGCCGAGGTATTCCTTGATAAAGTTGTCGCTTATATGCAAACAATGAAACAAGCATGATTATGTAGTACCTCCCCATCTGCTCCTTCATCATGACCGAGCGACGACATTATTAATGGTTCTCACCCAACGGCCAGCCCTGCATTACATTGTCATGTTTATTCCTTTTACCTTTTAAGTTGTTTCCTTTTGTTGAAGTTTATAAAAAAAAAAAAAA]

[-] EMBL CA761158             [AGAGGACGAGACAAGGGGGATCTTTGTTCCACACCAATTACACTCAAGAAAAACAGCGCTAATGGCCCAGAACAAGACCATTGCGGTGGCCCTGCTCCTTGCCACCCTTGTGGCGGTCATGGGAAAGGAGCCAGAGACGCTAGAGGAGACACTGAGAGCTGGGTGCAAAGAGGAATGCAGTGAGCAGAAAAAGAAAGCCCCCATCGACGAGAAACAATGTGAAGACTTCTGCTTCATCAAGACCAAGTCTATATTTGAGGCCCATAAGGGAGTGAAGGATCTAAAGGCGGATAGATTCATAGATTTTTGCAACAATGAGTGTAATGCAGTATATAAGGAGGATCCCGCCACAAGCAAGAAGTGTGCAGAAAGTTGCGAAGCTGATGCTAAGGAGGCCGAGGTATTCCTTGATAAAGTTGTCGCTTATATGCAAACAATGAAACAAGCATGATTATGTAGTACCTCCCCATCTGCTCCTTCATCATGACCGAGCGACGACATTATTAATGGTTCTCACCCAACGGCCAGCCCTGCATTACATTGTCATGTTTATTCCTTTTACCTTTTAAGTTGTTTCCTTTTGTTGAAGTTTATAAAAAAAAAAAAAA]


>consensus_14235#2 AGAGGACGAGACAAGGGGGATCTTTGTTCCACACCAATTACACTCAAGAAAAACAGCGCT AATGGCCCAGAACAAGACCATTGCGGTGGCCCTGCTCCTTGCCACCCTTGTGGCGGTCAT GGGAAAGGAGCCAGAGACGCTAGAGGAGACACTGAGAGCTGGGTGCAAAGAGGAATGCAG TGAGCAGAAAAAGAAAGCCCCCATCGACGAGAAACAATGTGAAGACTTCTGCTTCATCAA GACCAAGTCTATATTTGAGGCCCATAAGGGAGTGAAGGATCTAAAGGCGGATAGATTCAT AGATTTTTGCAACAATGAGTGTAATGCAGTATATAAGGAGGATCCCGCCACAAGCAAGAA GTGTGCAGAAAGTTGCGAAGCTGATGCTAAGGAGGCCGAGGTATTCCTTGATAAAGTTGT CGCTTATATGCAAACAATGAAACAAGCATGATTATGTAGTACCTCCCCATCTGCTCCTTC ATCATGACCGAGCGACGACATTATTAATGGTTCTCACCCAACGGCCAGCCCTGCATTACA TTGTCATGTTTATTCCTTTTACCTTTTAAGTTGTTTCCTTTTGTTGAAGTTTATAAAAAA AAAAAAAA



consensusID : consensus_14235#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence
                              [AACAGCGCTAATGGCCCAGAACAAGATCATTGCGGTGGCCCTGCTCCTTGCCACCCTTGTNGCGGTCATGGGAAAGGAGCCAGATACGCTAGAGGAGGCAGTTAGAACNGGGTGCAAAGAGGAATGCAGTTAGCCGAAAAGAAAGCNCCCATCGACGAGAAAGAATGTNAAGACTTCTGCTTAATCAAGACCAAGTTTATATTTGAAGGCCCATAAGGGAGTTANGGNTCTAAAGGCGGATAGATTCATAGATTTTTGCAACAATGAGTTTTATGCAGTTT]

[+] EMBL AU065119             [AACAGCGCTAATGGCCCAGAACAAGATCATTGCGGTGGCCCTGCTCCTTGCCACCCTTGTNGCGGTCATGGGAAAGGAGCCAGATACGCTAGAGGAGGCAGTTAGAACNGGGTGCAAAGAGGAATGCAGTTAGCCGAAAAGAAAGCNCCCATCGACGAGAAAGAATGTNAAGACTTCTGCTTAATCAAGACCAAGTTTATATTTGAAGGCCCATAAGGGAGTTANGGNTCTAAAGGCGGATAGATTCATAGATTTTTGCAACAATGAGTTTTATGCAGTTT]


>consensus_14235#3 AACAGCGCTAATGGCCCAGAACAAGATCATTGCGGTGGCCCTGCTCCTTGCCACCCTTGT NGCGGTCATGGGAAAGGAGCCAGATACGCTAGAGGAGGCAGTTAGAACNGGGTGCAAAGA GGAATGCAGTTAGCCGAAAAGAAAGCNCCCATCGACGAGAAAGAATGTNAAGACTTCTGC TTAATCAAGACCAAGTTTATATTTGAAGGCCCATAAGGGAGTTANGGNTCTAAAGGCGGA TAGATTCATAGATTTTTGCAACAATGAGTTTTATGCAGTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14235#0      ---------------------------TCCACACCAATTACACTCAAGAAAAACAGCGCT 33
consensus_14235#1      -----------------------GAGNTCGACCCAGCGTCCGCTCAAGAAAACCAGCGCT 37
consensus_14235#3      ---------------------------------------------------AACAGCGCT 9
consensus_14235#2      AGAGGACGAGACAAGGGGGATCTTTGTTCCACACCAATTACACTCAAGAAAAACAGCGCT 60
                                                                          * *******

consensus_14235#0      AATGGCCCAGAACAAGACCATTGCGGTGGCCCTGCTCCTTGCCACCCTTGTGGCGGTCAT 93
consensus_14235#1      AATGGCCCAGACCAAGACCATTGCGGTGGCCCTGCTCCTTGCCACCCTTGTGGCGGTCAT 97
consensus_14235#3      AATGGCCCAGAACAAGATCATTGCGGTGGCCCTGCTCCTTGCCACCCTTGTNGCGGTCAT 69
consensus_14235#2      AATGGCCCAGAACAAGACCATTGCGGTGGCCCTGCTCCTTGCCACCCTTGTGGCGGTCAT 120
                       *********** ***** ********************************* ********

consensus_14235#0      GGGAAAGGAGCCAGAGACGCTAGAGGAGGCAGTGAGAGCTGGGTGCAAAGAGGAATGCAG 153
consensus_14235#1      GGGAAAGGAGCCAGAGACGCTAGAGGAGGCAGTGAGAGCTGGGTGCAAAGAGGAATGCAG 157
consensus_14235#3      GGGAAAGGAGCCAGATACGCTAGAGGAGGCAGTTAGAACNGGGTGCAAAGAGGAATGCAG 129
consensus_14235#2      GGGAAAGGAGCCAGAGACGCTAGAGGAGACACTGAGAGCTGGGTGCAAAGAGGAATGCAG 180
                       *************** ************ ** * *** * ********************

consensus_14235#0      TGAGCAGAAAAAGAAAGCCCCCATCGACGAGAAACAATGTGAAGACTTCTGCTTCATCAA 213
consensus_14235#1      TGAGCAGAAAAAGAAAGCCCCCATCGACGAGAAACAATGTGAAGACTTCTGCTTCATCAA 217
consensus_14235#3      TTAGCCGAAAA-GAAAGCNCCCATCGACGAGAAAGAATGTNAAGACTTCTGCTTAATCAA 188
consensus_14235#2      TGAGCAGAAAAAGAAAGCCCCCATCGACGAGAAACAATGTGAAGACTTCTGCTTCATCAA 240
                       * *** ***** ****** *************** ***** ************* *****

consensus_14235#0      GACCAAGTCTATATTTGA-GGCCCATAAGGGAGTGAAGGATCTAAAGGCGGATAGATTCA 272
consensus_14235#1      GACCAAGTCTATATTTGA-GGCCCATAAGGGAGTGAAGGATCTAAAGGCGGATAGATTCA 276
consensus_14235#3      GACCAAGTTTATATTTGAAGGCCCATAAGGGAGTTANGGNTCTAAAGGCGGATAGATTCA 248
consensus_14235#2      GACCAAGTCTATATTTGA-GGCCCATAAGGGAGTGAAGGATCTAAAGGCGGATAGATTCA 299
                       ******** ********* *************** * ** ********************

consensus_14235#0      TAGATTTTTGCAACAATGAGTGTAATGCAGTATATAAGGAGGATCCCGCCACAAGCAAGA 332
consensus_14235#1      TAGATTTTTGCAACAATGAGTGTAATGCAGTATATAAGGAGGATCCCGCCACAAGCAAGA 336
consensus_14235#3      TAGATTTTTGCAACAATGAGTTTTATGCAGTTT--------------------------- 281
consensus_14235#2      TAGATTTTTGCAACAATGAGTGTAATGCAGTATATAAGGAGGATCCCGCCACAAGCAAGA 359
                       ********************* * ******* *                           

consensus_14235#0      AGTGTGCAGAAAGTTGCGAAGCTGATGCTAAGGAGGCCGAGGTATTCCTTGATAAAGTCG 392
consensus_14235#1      AGTGTGCAGAAAGTTGCGAAGCTGATGCTAAGGAGGCCGAGGTATTCCTTGATAAAGTCG 396
consensus_14235#3      ------------------------------------------------------------
consensus_14235#2      AGTGTGCAGAAAGTTGCGAAGCTGATGCTAAGGAGGCCGAGGTATTCCTTGATAAAGTTG 419
                                                                                   

consensus_14235#0      TCGCTTATATTCAAACAACGAAACAAGCATGATTATATTATGTAGTACCTCCCCATCTGT 452
consensus_14235#1      TCGCTTATATTCAAACAACGAAACAAGCATGATTATATTATGTAGTACCTCCCCATCTGT 456
consensus_14235#3      ------------------------------------------------------------
consensus_14235#2      TCGCTTATATGCAAACAATGAAACAAGCATGATTA-----TGTAGTACCTCCCCATCTGC 474
                                                                                   

consensus_14235#0      TCCTTCATCATGACCGAGCGACGACATTATTAATGGTTCTCACCCAACGGCCAGCCCTGC 512
consensus_14235#1      TCCTTCATCATGACCGAGCGACGACATTATTAATGGTTCTCACCCAACGGCCAGCCCTGC 516
consensus_14235#3      ------------------------------------------------------------
consensus_14235#2      TCCTTCATCATGACCGAGCGACGACATTATTAATGGTTCTCACCCAACGGCCAGCCCTGC 534
                                                                                   

consensus_14235#0      ATTACATTGTCATGTTTATTCCTTTTACCTTTTAAGTTGTTTCCTTTTGTTGAAGTTTAT 572
consensus_14235#1      ATTACATTGTCATGTTTATTCCTTTTACCTTTTAAGTTGTTTCCTTTTGTTGAAGTTTAT 576
consensus_14235#3      ------------------------------------------------------------
consensus_14235#2      ATTACATTGTCATGTTTATTCCTTTTACCTTTTAAGTTGTTTCCTTTTGTTGAAGTTTAT 594
                                                                                   

consensus_14235#0      AACTTCCGAGTGATTGATTTGGTATGTCGTTCTTCCCAATATTACGGGAGACATATGTAA 632
consensus_14235#1      AACTTCCGAGTGATTGATTTGGTATGTCGTTCTTCCCAATATTACGGGAGACATATGTAA 636
consensus_14235#3      ------------------------------------------------------------
consensus_14235#2      AAAAAAAAAAAAAA---------------------------------------------- 608
                                                                                   

consensus_14235#0      TAATATTTCAATTGATGATTAAATAAATCTAGAGGTGTTTGGGCTTTTAAAAAAAAAAAA 692
consensus_14235#1      TAATATTTCAATTGATGATTAAATAAATCTAGAAAAAAA--------------------- 675
consensus_14235#3      ------------------------------------------------------------
consensus_14235#2      ------------------------------------------------------------
                                                                                   

consensus_14235#0      AAAA 696
consensus_14235#1      ----
consensus_14235#3      ----
consensus_14235#2      ----
                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)