These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14238#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1421 fasta sequence [CACCTCCGCCTCTCTCTCGATCCATCTCCCCCCTCTCTCCTCTCCTCTCTCTCTCCGTTCCCAATCTGCGGAGGCGGAGGCGGAGCTAGGGCGCGGCGTCGCCGGCGAGGAGTTCCGCAGGCGCGGTGTGGACGGGGCTCCTCTGCTTCCGCACACGGCGGGCGGCGACGGCGAGCAGGGTTGGAGGGGCGGCGCGGCGACCTCCTCGTTCCTGCCTTGCCTGCCTCCATCTGGTGTTGGAAATATCATAAGTTTTGGGACAAGCAAGAGAGGACATGGAGCCATCATCACAACCTCAGCCGGCAATTGGTGTTGTTGCTGGTGGATCACAAGTGTACCCTGCATACCGGCCTGCAGCAACAGTGCCTACAGCTCCTGCTGTCATTCCTGCCGGTTCACAGCCAGCACCGTCGTTCCCTGCCAACCCTGATCAACTGAGTGCTCAGCACCAGCTCGTCTATCAGCAAGCCCAGCAATTTCACCAGCAGCTTCAGCAGCAGCAACAGCGTCAACTCCAGCAGTTTTGGGCTGAACGTCTGGTCGATATTGAACAAACTACTGACTTCAAGAACCACAGCTTGCCACTTGCTAGGATAAAGAAGATCATGAAGGCAGATGAGGACGTTCGCATGATCTCCGCAGAGGCTCCTGTGATCTTTGCGAAAGCATGTGAGATATTCATACTGGAGCTGACCCTGAGATCATGGATGCACACGGAGGAGAACAAGCGCCGTACCTTGCAGAAGAATGACATAGCAGCTGCCATCACCAGGACGGATATGTACGATTTCTTGGTAGATATAGTTCCCAGGGATGACTTGAAGGAGGAGGGAGTTGGGCTCCCTAGGGCTGGATTGCCGCCCTTGGGTGTCCCTGCTGACTCATATCCGTATGGCTACTATGTGCCACAGCAGCAGGTCCCAGGTGCAGGAATAGCGTATGGTGGTCAGCAAGGTCATCCGGGGTATCTGTGGCAGGATCCTCAGGAACAGCAGGAAGAGCCTCCTGCAGAGCAGCAAAGTGATTAAGAAGAGTAAATGATCCCTGTGAATTGTCAAGAAGCTTACCACCTGATTCAGAATTTTACTTTTAGCCAGGTTGTCGTCTATTCTGAATTTATGAATAGGATTAGGATTCTCTCATGGTAGTTGCATTTCTGCTGTAGTGGAAAAGGATTTATGACATGAGAGTATGAGACTAATGGGTTTCAGTTACTATACCGTTTCCTGTCAATCCAAAAGTTGGCCTTTGCGAGGCCATTGATATTGAACCTAATGTGGTTGAACTGCCCATGCCAACGTTTGTAAGCTCTGATGTGGGTCATTCTGTATTTCATGTTTGCATGGTTTCATGGAATCTTCTTTGTTTAGACAATGAAAATGTTTTACATTCGTGGCATCTGCCATAAAAAAAAAAAAAAA] [+] EMBL AK066630 [CACCTCCGCCTCTCTCTCGATCCATCTCCCCCCTCTCTCCTCTCCTCTCTCTCTCCGTTCCCAATCTGCGGAGGCGGAGGCGGAGCTAGGGCGCGGCGTCGCCGGCGAGGAGTTCCGCAGGCGCGGTGTGGACGGGGCTCCTCTGCTTCCGCACACGGCGGGCGGCGACGGCGAGCAGGGTTGGAGGGGCGGCGCGGCGACCTCCTCGTTCCTGCCTTGCCTGCCTCCATCTGGTGTTGGAAATATCATAAGTTTTGGGACAAGCAAGAGAGGACATGGAGCCATCATCACAACCTCAGCCGGCAATTGGTGTTGTTGCTGGTGGATCACAAGTGTACCCTGCATACCGGCCTGCAGCAACAGTGCCTACAGCTCCTGCTGTCATTCCTGCCGGTTCACAGCCAGCACCGTCGTTCCCTGCCAACCCTGATCAACTGAGTGCTCAGCACCAGCTCGTCTATCAGCAAGCCCAGCAATTTCACCAGCAGCTTCAGCAGCAGCAACAGCGTCAACTCCAGCAGTTTTGGGCTGAACGTCTGGTCGATATTGAACAAACTACTGACTTCAAGAACCACAGCTTGCCACTTGCTAGGATAAAGAAGATCATGAAGGCAGATGAGGACGTTCGCATGATCTCCGCAGAGGCTCCTGTGATCTTTGCGAAAGCATGTGAGATATTCATACTGGAGCTGACCCTGAGATCATGGATGCACACGGAGGAGAACAAGCGCCGTACCTTGCAGAAGAATGACATAGCAGCTGCCATCACCAGGACGGATATGTACGATTTCTTGGTAGATATAGTTCCCAGGGATGACTTGAAGGAGGAGGGAGTTGGGCTCCCTAGGGCTGGATTGCCGCCCTTGGGTGTCCCTGCTGACTCATATCCGTATGGCTACTATGTGCCACAGCAGCAGGTCCCAGGTGCAGGAATAGCGTATGGTGGTCAGCAAGGTCATCCGGGGTATCTGTGGCAGGATCCTCAGGAACAGCAGGAAGAGCCTCCTGCAGAGCAGCAAAGTGATTAAGAAGAGTAAATGATCCCTGTGAATTGTCAAGAAGCTTACCACCTGATTCAGAATTTTACTTTTAGCCAGGTTGTCGTCTATTCTGAATTTATGAATAGGATTAGGATTCTCTCATGGTAGTTGCATTTCTGCTGTAGTGGAAAAGGATTTATGACATGAGAGTATGAGACTAATGGGTTTCAGTTACTATACCGTTTCCTGTCAATCCAAAAGTTGGCCTTTGCGAGGCCATTGATATTGAACCTAATGTGGTTGAACTGCCCATGCCAACGTTTGTAAGCTCTGATGTGGGTCATTCTGTATTTCATGTTTGCATGGTTTCATGGAATCTTCTTTGTTTAGACAATGAAAATGTTTTACATTCGTGG ] [+] EMBL AK105079 [ CCTCCGCCTCTCTCTCGATCCATCTCCCCCCTCTCTCCTCTCCTCTCTCTCTCCGTTCCCAATCTGCGGAGGCGGAGGCGGAGCTAGGGCGCGGCGTCGCCGGCGAGGAGTTCCGCAGGCGCGGTGTGGACGGGGCTCCTCTGCTTCCGCACACGGCGGGCGGCGACGGCGAGCAGGGTTGGAGGGGCGGCGCGGCGACCTCCTCGTTCCTGCCTTGCCTGCCTCCATCTGGTGTTGGAAATATCATAAGTTTTGGGACAAGCAAGAGAGGACATGGAGCCATCATCACAACCTCAGCCGGCAATTGGTGTTGTTGCTGGTGGATCACAAGTGTACCCTGCATACCGGCCTGCAGCAACAGTGCCTACAGCTCCTGCTGTCATTCCTGCCGGTTCACAGCCAGCACCGTCGTTCCCTGCCAACCCTGATCAACTGAGTGCTCAGCACCAGCTCGTCTATCAGCAAGCCCAGCAATTTCACCAGCAGCTTCAGCAGCAGCAACAGCGTCAACTCCAGCAGTTTTGGGCTGAACGTCTGGTCGATATTGAACAAACTACTGACTTCAAGAACCACAGCTTGCCACTTGCTAGGATAAAGAAGATCATGAAGGCAGATGAGGACGTTCGCATGATCTCCGCAGAGGCTCCTGTGATCTTTGCGAAAGCATGTGAGATATTCATACTGGAGCTGACCCTGAGATCATGGATGCACACGGAGGAGAACAAGCGCCGTACCTTGCAGAAGAATGACATAGCAGCTGCCATCACCAGGACGGATATGTACGATTTCTTGGTAGATATAGTTCCCAGGGATGACTTGAAGGAGGAGGGAGTTGGGCTCCCTAGGGCTGGATTGCCGCCCTTGGGTGTCCCTGCTGACTCATATCCGTATGGCTACTATGTGCCACAGCAGCAGGCCCCAGGTGCAGGAATAGCGTATGGTGGTCAGCAAGGTCATCCGGGGTATCTGTGGCAGGATCCTCAGGAACAGCAGGAAGAGCCTCCTGCAGAGCAGCAAAGTGATTAAGAAGAGTAAATGATCCCTGTGAATTGTCAAGAAGCTTACCACCTGATTCAGAATTTTACTTTTAGCCAGGTTGTCGTCTATTCTGAATTTATGAATAGGATTAGGATTCTCTCATGGTAGTTGCATTTCTGCTGTAGTGGAAAAGGATTTATGACATGAGAGTATGAGACTAATGGGTTTCAGTTACTATACCGTTTCCTGTCAATCCAAAAGTTGGCCTTTGCGAGGCCATTGATATTGAACCTAATGTGGTTGAACTGCCCATGCCAACGTTTGTAAGCTCTGATGTGGGTCATTCTGTATTTCATGTTTGCATGGTTTCATGGAATCTTCTTTGTTTAGACAATGAAAATGTTTTACATTCGTGGCATCT ] [-] EMBL CA762077 [ GCCGTACC TGCAGAAGAATGACATAGCAGCTCCCATCACCAGGAGGGATATGTCCGATTTCTTGGTAGATATAGTTCCCAGGGATGACTTGAAGGAGGAGGGAGTTGGGCTCCCTAGGGCTGGATGGCCGCCCTTGGGTGTCCCTGCTGACTCATATCCGTATGGCTACTATGTGCCACAGCAGCAGGTCCCAGGTGCAGGAATAGCGTATGGTGGTCAGCAAGGTCATCCGGGGTATCTGTGGCAGGATCCTCAGGAACAACAGGAAGAGCCTCCTGCAGAGCAGCAAAGTGATTAAGAAGAGTAAATGATCCCTGTGAATTGTCAAGAAGCTTACCACCTGATTCAGAATTTTACTTTTAGCCAGGTTGTCGTCTATTCTGAATTTATGAATAGGATTAGGATTCTCTCATGGTAGTTGCATTTCTGCTGTAGTGGAAAAGGATTTATGACATGAGAGTATGAGACTAATGGGTTTCAGTTACTATACCGTTTCCTGTCAATCCAAAAGTTGGCCTTTGCGAGGCCATTGATATTGAACCTAATGTGGTTGGACTGCCCATGCCAACGTTTGTAAGCTCTGATGTGGGTCATTCTGTATTTCATGTTTGCATGGTTTCATGGAATCTTCTTTGTTTAGACAATGAAAATGTTTTACATTCGTGGCATCTGCCATAAAAAAAAAAAAAAA] [+] EMBL CA766282 [ TGGGCTCCCTAGGGCTGGATTGCCGCCCTTGGGTGTCCCTGCTGACTCATATCCGTATGGCTACTATGTGCCACAGCAGCAGGTCCCAGGTGCAGGAATAGCGTATGGTGGTCAGCAAGGTCATCCGGGGTATCTGTGGCAGGATCCTCAGGAACAACAGGAAGAGCCTCCTGCAGAGCAGCAAAGTGATTAAGAAGAGTAAATGATCCCTGTGAATTGTCAAGAAGCTTACCACCTGATTCAGAATTTTACTTTTAGCCAGGTTGTCGTCTATTCTGAATTTATGAATAGGATTAGGATTCTCTCATGGTAGTTGCATTTCTGCTGTAGTGGAAAAGGATTTACGACATGAGAGTATGAGACTAATGGGTTTCAGTTACTATACCGTTTCCTGTCAATCCAAAAGTTGGCCTTTGCGAGGCCATTGATATTGAACCTAATGTGGTTGAACTGCCCATGCCAACGTTTGTAAGCTCTGATGTGGGTCATTCTGTATTTCATGTTTGCATG ] consensusID : consensus_14238#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1243 fasta sequence [ACCGCGTCTCCCTCTCTCTCTCTCTCTCCGCCGCCGACGCCGAGGGCTCCACGAGAGGGAGGTGGGCGGCGCGGCCCTTCGCCGGAGGGAGCGCTCTCCGCCGCCGCCGCTCCCGCTCCCGCCGGCGCGGGAGA-TCCGGGCGTCGTCTCTCGGGCCTTTGGCTTTGGACGGACAAGAGCTGACATGGAACCATCCTCACAGCCTCAGCCTGTGATGGGTGTTGCCACTGGTGGGTCACAAG-CATATCCTCCTCCTGCTGCTGCATATCCACCTCAAGCCATGGTTCCTGGAGCTCCTGCTGTTGTTCCTCCTGGCTCACAGCCATCAGCACCATTCCCCACTAATCCAGCTCAACTCAGTGCTCAGCACCAGCTAGTCTACCAACAAGCCCAGCAATTTCATCAGCAGCTGCAGCAACAGCAACAGCAGCAACTCCGTGAGTTCTGGGCTAACCAAATGGAAGAGATTGAGCAAACAACCGACTTCAAGAACCACAGCTTGCCACTCGCAAGGATAAAGAAGATAATGAAGGCTGATGAGGATGTCCGGATGATCTCGGCAGAAGCCCCCGTTGTCTTCGCAAAGGCATGCGAGGTATTCATATTAGAGTTAACATTGAGGTCGTGGATGCACACGGAGGAGAACAAGCGCCGGACCTTGCAGAAGAATGACATTGCAGCTGCCATCACCAGGACTGATATCTATGACTTCTTGGTGGACATAGTTCCCAGGGATGAAATGAAAGAAGAAGGGCTTGGGCTTCCGAGGGTTGGCCTACCGCCTAATGTGGGGGGCGCAGCAGACACATATCCATATTACTACGTGCCAGCGCAGCAGGGGCCTGGAT-CAGGAATGATGTACGGTGGACAGCAAGGTCACCCGGTGACGTATGTGTGGCAGCAGCCTCAAGAGC-AACAGGAAGAGGCCCCTGAAGAGCAGCACTCTCTGCCAGAAAGTAGCTAAAGATGATACAGTGAAGTTGTGACATTGATATACATTGTCCTGTGAACTTAGGGCCTCTAAAACTCAGTGCTCTTGTCAAAACTATTCCCATGATTGTTGGCTGAAACGGGTAATCTGATTAGGTCTTAGGCTTTCCTAATGTTAGTTCTGCTCTGCTATGGCAGCAGTAGAAAAAAAAAAGATTGTGATTTGGTAGGTGATTTGCAACTAATGTAGTAACTGTACCTTACCTTTCATCAGTTTCTAATCCAATACTCAAAAGTGCTGGCAAAAAAAAAAA] [+] EMBL AU172615 [ACCGCGTCTCTCTCTCTCTCTCTCTCTCCGCCGCCGACGCCGAGGGCTCCACGAGAGGGAGGTGGGCGGCGCGGCCCTTCGCCGGAGGGAGCGCTCTCCGCCGCCGCCGCTCCCGCTCCCGCCGGCGCGGGAGA TCCGGGCGTCGTCTCTCGGGCCTTTGGCTTTGGACGGACAAGAGCTGACATGGAACCATCCTCACAGCCTCAGCCTGTGATGGGTGTTGCCACTGGTGGGTCACAAG CATATCCTCCTCCTGCTGCTGCATATCCACCTCAAGCCATGGTTCCTGGAGCTCCTGCTGTTGTTCCTCCTGGCTCACAGCCATCAGCACCATTCCCCACTAATCCAGCTCAACTCAGTGCTCAGCACCAGCTAGTCTACCAACAAGCCCAGCAATTTCATCAGCAGCTGCAGCAACAGCAACAGCAGCAACTCCGTGAGTTCT ] [+] EMBL AU068271 [ GCNTCTCCCTCTCTCTCTCTCTCTCCGCCGCCGACGCCGAGGGCTCCACGAGAGGGAGGTGGGCGGCGCGGCCCTTNGCCGGAGGGAGCGCTCTCCGCCGCCGCCGCTCCCGCTCCCGCCGGCGC GGAGANTCCGGGCNTNGTCTCTCGGGCCTTTGGCTTTGGACGGACAAGAGCTGACATGGAACCATCCTCACAGCCTCAGCCTGTAATGGGTGTTGCCACTGGTGGGTCACAAG CATATCCTCCTCCTGCTGCTGCATATCCACCTCAAGCCATGGTTCCTGGAGCTCCTGCT ] [+] EMBL C72721 [ GCGTCTCCCTCTCTCTCTCTCTCTCCGCCGCCGACGCCGAGGGCTCCACGAGAGGGAGGTGGGCGGCGCGGCCCTTCGCCGGAGGGAGCGCTCTCCGCCGCCGCCGCTCCCGCTCCCGCCGGCGCGGGAGA TCCGGGCGTCGTCTCTCGGGCCTTTGGCTTTGGACGGACAAGAGCTGACATGGAACCATCCTCACAGCCTCAGCCTGTGATGGGTGTTGCCACTGGTGGGTCACAAGNAAAATCCTCCTCCTGCTGCTGCATATCCACCTCAAGCCATGGTTCCTGGAGCTCCTGCTGTTGTTCCTCCTGGCTCACAGCCATCAGCACCATTCCCCACTAATCCAGCTC ACTCAGTGCTCAGCACC ] [+] EMBL AU197697 [ ACCAGCTAGTCTACCAACAAGCCCAGCAATTTCATCAGCAGCTGCAGCAACAGCAACAGCAGCAACTCCGTGAGTTCTGGGCTAACCAAATGGAAGAGATTGAGCAAACAACCGACTTCAAGAACCACAGCTTGCCACTCGCAAGGATAAAGAAGATAATGAAGGCTGATGAGGATGTCCGGATGATCTCGGCAGAAGCCCCCGTTGTCTTCGCAAAGGCATGCGAGGTATTCATATTAGAGTTAACATTGAGGTCGTGGATGCACACGGAGGAGAACAAGCGCCGGACCTTGCAGAAGAATGACATTGCAGCTGCCATCACCAGGACTGATATCTATGACTTCTTGGTGGACATAGTTCCCAGGGATGAAATGAAAGAAGAAGGGCTTGGGCTTCCGAGGGTTGGCCTACCGCCTAATGTGGGGGGCGCAGCAGACACATATCC ] [-] EMBL CB660239 [ TAAAGAAGATAATGAAGGCTGATGAGGATGTCCGGATGATCTCGGCAGAAGCCCCCGTTGTCTTCGCAAAGGCATGCGAGGTATTCATATTAGAGTTAACATTGAGGTCGTGGATGCACACGGAGGAGAACAAGCGCCGGACCTTGCAGAAGAATGACATTGCAGCTGCCATCACCAGGACTGATATCTATGACTTCTTGGTGGACATAGTTCCCAGGGATGAAATGAAAGAAGAAGGGCTTGGGCTTCCGAGGGTTGGCCTACCGCCTAATGTGGGGGGCGCAGCAGACACATATCCATATTACTACGTGCCAGCGCAGCAGGGGCCTGGAT CAGGAATGATGTACGGTGGACAGCAAGGTCACCCGGTGACGTATGTGTGGCAGCAGCCTCAAGAGC AACAGGAAGAGGCCCCTGAAGAGCAGCACTCTTTGCCAGAAAGTAGCTAAAGATGATACAGTGAAGTTGTGACATTGATATACATTGTCCTGTGAACTTAGGGCCTTTAAAACTCAGTGCTCTTGTCAAAACTATTCCCATGATTGTTGGCTGAAACGGGTAATCTGATTAGGTCTTAGGCTTTCCTAATGTTAGTTCTGCTTTGCTATGGCAGCAGTAGAAAAAAAAAAGATTGTGATTTGGTAGGTGATTTGCAACTAATGTAGTAACTNTACCTTACCTTTCATCAn ] [+] EMBL BE530941 [ AGAACAAGCGCCGGACCTTGCAGAAGAATGACATTGCAGCTGCCATCACCAGGACTGATATCTATGACTTCTTGGTGGACATAGTTCCCAGGGATGAAATGAAAGAAGAAGGGCTTGGGCTTCCGAGGGTTGGCCTACCGCCTAATGTGGGGGGCGCAGCAGACACATATCCATATTACTACGTGCCAGCGCAGCAGGGGCCTGGAT CAGGAATGATGTACGGTGGACAGCAAGGTCACCCGGTGACGTATGTGTGGCAGCAGCCTCAAGAGC AACAGGAAGAGGCCCCTGAAGAGCAGCACTCTCTGCCAGAAAGTAGCTAAAGATGATACAGTGAAGTTGTGACATTGATATACATTGTCCTGTGAACTTAGGGCCTCTAAAACTCAGTGCTCTTGTCAAAACTATTCCCATGATTGTTGGCTGAAACGGGTAATCTGATTAGGTCTTAGGCTTTCCTA ] [+] EMBL AU068270 [ AAGCGCCGGCCCTTGCAGAAGAATGCCATTGCAGCTGCCATCACCAGGACTGATATCTATGNCTTCTTGGTGGACATAGTTCCCAGGNATGAAATGAAAGAAGAAGGNCTTGGGCTTCCGAGGGTTGGCNTACCGCCTAATNTGGGGGGCGCAGCAGACACATATCCATATTACTACGTGCCAGCGCAGCAGGGGCCTGGATCCAGGAATGATGTACGGTGGACAGCAAGGTCNCCCGGTGACNTATGTGTGGCAGCAGCCTCAAGAGCNACCAGGAAGAGGCCCCTGAAGAGCAGCACTCTCTGCCAGAAAGTAGCTAAAGATGATACAGTGAAGTTGTGACATTGATATACATTGTCCTGTGAACTTAGGGCCTCTAAAACTCAGTGCTCTTGTCNAAACTATTCCCATGATTGTTGGCTGAAACGGGTAATCTGATTAGGTCTTAGGCTTTCCTAATGTTAGTTCTGCTCTGCTATGGCAGCAGTAGAAAAAAAAAAGATTGTGATTTGGTAGGTGATTTGCAACTAATGTAGTAACTGTACCTTACCTTTCATCAGTTTCTAATCCAATACTCAAAAGTGCTGGCAAAAAAAAAAA] [+] EMBL AU172616 [ TACTACGTGCCAGCGCAGCAGGGGCCTGGAT CAGGAATGATGTACGGTGGACAGCAAGGTCACCCGGTGACGTATGTGTGGCAGCAGCCTCAAGAGC AACAGGAAGAGGCCCCTGAAGAGCAGCACTCTCTGCCAGAAAGTAGCTAAAGATGATACAGTGAAGTTGTGACATTGATATACATTGTCCTGTGAACTTAGGGCCTCTAAAACTCAGTGCTCTTGTCAAAACTATTCCCATGATTGTTGGCTGAAACGGGTAATCTGATTAGGTCTTAGGCTTTCCTAATGTTAGTTCTGCTCTGCTATGGCAGCAGTAGAAAAAAAAAAGATTGTGATTTGGTAGGTGATTTGCAACTAATGTAGTAACTGTACCTTACCTTTCATCAGTTTCTAATCCAATACTCAAAAGTGCTGGCAAAAAAAAA ] consensusID : consensus_14238#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 734 fasta sequence [ATAATGAACGTTGAAGAGGATGTCCGGATGATCTCGGCAGAAGCCCCCGTTGTCTTCGC-AAAGG-CATG-CGAGG-TATTCATATTACAG-TTAACATTGAGGGCGGGGATGCA-CACGGA-GGAGAACAAGCGCCGGACCTTGCAAAAGAATGACATTGCAGCTGCCA-TCACCAGGACTGATATCTATGACTTCTTGGTGGACATAGTT-CCCAGGGATGAAATGAAAGAAGAAGGGCTTGGGCTTCCGAGGGTTGGCCTACCGCCTAATGTGGGGGGCGCAGCAGACACATATCCATATTACTACGTGCCATCGCAGCAGGGGCCTGGATCAGGAATGATGTACGGTGGACAGCAAGGTCACCCGGTGACGTATGTGTGGCAGCAGCCTCAAGAGCAACAGGAAGAGGCCCCTGAAGAGCAGCACTCTCTGCCAGAAAGTAGCTAAAGATGATACAGTGAAGTTGTGACATTGATATACATTGTCCTGTGAACTTAGGGCCTCTAAAACTCAGTGCTCTTGTCAAAACTATTCCCATGATTGTTGGCTGAAACGGGTAATCTGATTACGTCTTAGGCTTTCCTAATGTTAGTTCTGCTCTGCTATGGCAGCAGTAGAAAAAAAAAAGATTGTGATTTGGTACGTGATTTGCAACTAATGTAGTAACTGTACCTTACCTTTCATCAGTTTCTAATCCAATACTCAAAAGTGCTGGCATGTGGAGACCCTTGTATGAAAAA] [+] EMBL CB660240 [ATAATGAACGTTGAAGAGGATGTCCGGATGATCTCGGCAGAAGCCCCCGTTGTCTTCGC AAAGG CATG CGAGG TATTCATATTACAG TTAACATTGAGGGCGGGGATGCA CACGGA GGAGAACAAGCGCCGGACCTTGCAAAAGAATGACATTGCAGCTGCCA TCACCAGGACTGATATCTATGACTTCTTGGTGGACATAGTT CCCAGGGATGAAATGAAAGAAGAAGGGCTTGGGCTTCCGAGGGTTGGCCTACCGCCTAATGTGGGGGGCGCAGCAGACACATATCCATATTACTACGTGCCATCGCAGCAGGGGCCTGGATCAGGAATGATGTACGGTGGACAGCAAGGTCACCCGGTGACGTATGTGTGGCAGCAGCCTCAAGAGCAACAGGAAGAGGCCCCTGAAGAGCAGCACTCTCTGCCAGAAAGTAGCTAAAGATGATACAGTGAAGTTGTGACATTGATATACATTGTCCTGTGAACTTAGGGCCTCTAAAACTCAGTGCTCTTGTCAAAACTATTCCCATGATTGTTGGCTGAAACGGGTAATCTGATTACGTCTTAGGCTTTCCTAATGTTAGTTCTGCTCTGCTATGGCAGCAGTAGAAAAAAAAAAGATTGTGATTTGGTACGTGATTTGCAACTAATGTAGTAACTGTACCTTACCTTTCATCAGTTTCTAATCCAATACTCAAAAGTGCTGGCATGTGGAGACC ] [+] EMBL AU094053 [ CCGTTGTCTTCGCAAAAGGCCTTGCCGAGGTTATTCATATTAGAGTTTACCNTTGAGGTCGTGGATGCACCACGGAGGGAGAACAAGCNCCGGACCTTGCAGAAGAATGACATTGCAGCTGCCATTCACCAGGACTGATATCTATGACTTCTTGGTGGCCATAGTTCCCCAGGGATG AATGAAAGAAGAAGGGCTTGGGCTTCCGAGGGTTGGCCTACCGCCTAATGTGGGGGGCGCAGCAGACACATATCCATATTACTACGTGCCAGCGCAGCAGGGGCCTGGATCAGGAATGATGTACGGTGGACAGCAAGGTCACCCGGTGACGTATGTGTGGCAGCAGCCTCAAGAGCAACAGGAAGAGGCCCCTGAAGAGCAGCACTCTCTGCCAGAAAGTAGCTAAAGATGATNCAGTGAAGTTGTGACATTGATATACATTGTCCTGTGAACTTAGGGCCTCTAAAACTCAGTGCTCTTGTCAAAACTATTCCCATGATTGTTGGCTGAAACGGGTAATCTGATTAGGTCTTAGGCTTTCCTAATGTTAGTTCTGCTCTGCTATGGCAGCAGTAGAAAAAAAAAAGATTGTGATTTGGTAGGTGATTTGCAACTAATGTAGTAACTGTACCTTACCTTTCATCAGTTTCTAATCCAATACTCAAAAGTGCTGGCATGTGGAGACCCTTGTATGAAAAA] consensusID : consensus_14238#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence [TTCGGCACGAGCAGAAGCCCCCGTTGTCTTCGCAAAGGCATGCGAGGTATTCATATTAGAGTTAACATTGAGGTCGTGGATGCACACGGAGGAGAACAAGCGCCGGACCTTGCAGAAGAATGACATTGCAGCTGCCATCACCAGGACTGATATCTATGACTTCTTGGTGGACATAGTTCCCAGGGATGAAATGAAAGAAGAAGGGCTTGGGCTTCCGAGGGTTGGCCTACCGCCTAATGTGGGGGGCGCANCANACACATATCCATATTACTACGTGCCANCGCACANGGGCCTGGATCTT] [+] EMBL AA754650 [TTCGGCACGAGCAGAAGCCCCCGTTGTCTTCGCAAAGGCATGCGAGGTATTCATATTAGAGTTAACATTGAGGTCGTGGATGCACACGGAGGAGAACAAGCGCCGGACCTTGCAGAAGAATGACATTGCAGCTGCCATCACCAGGACTGATATCTATGACTTCTTGGTGGACATAGTTCCCAGGGATGAAATGAAAGAAGAAGGGCTTGGGCTTCCGAGGGTTGGCCTACCGCCTAATGTGGGGGGCGCANCANACACATATCCATATTACTACGTGCCANCGCACANGGGCCTGGATCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14238#1 ------------------------------------------------------------ consensus_14238#2 ------------------------------------------------------------ consensus_14238#3 ------------------------------------------------------------ consensus_14238#0 CACCTCCGCCTCTCTCTCGATCCATCTCCCCCCTCTCTCCTCTCCTCTCTCTCTCCGTTC 60 consensus_14238#1 --------------------------------ACCGCGTCTCCCTCTCTCTCTCTCTCTC 28 consensus_14238#2 ------------------------------------------------------------ consensus_14238#3 ------------------------------------------------------------ consensus_14238#0 CCAATCTGCGGAGGCGGAGGCGGAGCTAGGGCGCGGCGTCGCCGGCGAGGAGTTCCGCAG 120 consensus_14238#1 CGCCGCCGACGCCGAGGGCTCCACGAGAGGGAGGTGGGCGGC--GCGGCCCTTCGCCGGA 86 consensus_14238#2 ------------------------------------------------------------ consensus_14238#3 ------------------------------------------------------------ consensus_14238#0 GCGCGGTGTGGACGGGGCTCCTCTGCTTCCGCACACGGCGGGCGGCGACGGCGAGCAGGG 180 consensus_14238#1 GGGAGCGCTCTCCGCCGCCGCCGCTCCCGCTCCCGCCGGCGCGGGAGATCCGGGCGTCGT 146 consensus_14238#2 ------------------------------------------------------------ consensus_14238#3 ------------------------------------------------------------ consensus_14238#0 TTGGAGGGGCGGCGCGGCGACCTCCTCGTTCCTGCCTTGCCTGCCTCCATCTGGTGTTGG 240 consensus_14238#1 CTCTCGGGCCTTTGGCTTTGGACGGACAAGAGCTGACATGGAACCATCCTCACAGCCTCA 206 consensus_14238#2 ------------------------------------------------------------ consensus_14238#3 ------------------------------------------------------------ consensus_14238#0 AAAT--ATCATAAGTTTTGGGACAAGCAAGAGAGGACATGGAGCCATCATCACAACCTCA 298 consensus_14238#1 GCCTGTGATGGGTGTTGCCACTGGTGGGTCACAAGCATATCCTCCTCCTGCTGCTGCATA 266 consensus_14238#2 ------------------------------------------------------------ consensus_14238#3 ------------------------------------------------------------ consensus_14238#0 GCCGGCAATTGGTGTTGTTGCTGGTGGATCACAAGTGTACCCT------------GCATA 346 consensus_14238#1 TCCACCTCAAGCCATGGTTCCTGGAGCTCCTGCTGTTGTTCCTCCTGGCTCACAGCCATC 326 consensus_14238#2 ------------------------------------------------------------ consensus_14238#3 ------------------------------------------------------------ consensus_14238#0 CCGGCCTGCAGCAACAGTGCCTACAGCTCCTGCTGTCATTCCTGCCGGTTCACAGCCAGC 406 consensus_14238#1 AGCACCATTCCCCACTAATCCAGCTCAACTCAGTGCTCAGCACCAGCTAGTCTACCAACA 386 consensus_14238#2 ------------------------------------------------------------ consensus_14238#3 ------------------------------------------------------------ consensus_14238#0 ACCGTCGTTCCCTGCCAACCCTGATCAACTGAGTGCTCAGCACCAGCTCGTCTATCAGCA 466 consensus_14238#1 AGCCCAGCAATTTCATCAGCAGCTGCAGCAACAGCAACAGCAGCAACTCCGTGAGTTCTG 446 consensus_14238#2 ------------------------------------------------------------ consensus_14238#3 ------------------------------------------------------------ consensus_14238#0 AGCCCAGCAATTTCACCAGCAGCTTCAGCAGCAGCAACAGCGTCAACTCCAGCAGTTTTG 526 consensus_14238#1 GGCTAACCAAATGGAAGAGATTGAGCAAACAACCGACTTCAAGAACCACAGCTTGCCACT 506 consensus_14238#2 ------------------------------------------------------------ consensus_14238#3 ------------------------------------------------------------ consensus_14238#0 GGCTGAACGTCTGGTCGATATTGAACAAACTACTGACTTCAAGAACCACAGCTTGCCACT 586 consensus_14238#1 CGCAAGGATAAAGAAGATAATGAAGGCTGATGAGGATGTCCGGATGATCTCGGCAGAAGC 566 consensus_14238#2 ----------------ATAATGAACGTTGAAGAGGATGTCCGGATGATCTCGGCAGAAGC 44 consensus_14238#3 ------------------------------------------TTCGGCACGAGCAGAAGC 18 consensus_14238#0 TGCTAGGATAAAGAAGATCATGAAGGCAGATGAGGACGTTCGCATGATCTCCGCAGAGGC 646 * ***** ** consensus_14238#1 CCCCGTTGTCTTCGCAAAGGCATGCGAGGTATTCATATTAGAGTTAACATTGAGGTCGTG 626 consensus_14238#2 CCCCGTTGTCTTCGCAAAGGCATGCGAGGTATTCATATTACAGTTAACATTGAGGGCGGG 104 consensus_14238#3 CCCCGTTGTCTTCGCAAAGGCATGCGAGGTATTCATATTAGAGTTAACATTGAGGTCGTG 78 consensus_14238#0 TCCTGTGATCTTTGCGAAAGCATGTGAGATATTCATACTGGAGCTGACCCTGAGATCATG 706 ** ** **** ** ** ***** *** ******** * ** * ** **** * * consensus_14238#1 GATGCACACGGAGGAGAACAAGCGCCGGACCTTGCAGAAGAATGACATTGCAGCTGCCAT 686 consensus_14238#2 GATGCACACGGAGGAGAACAAGCGCCGGACCTTGCAAAAGAATGACATTGCAGCTGCCAT 164 consensus_14238#3 GATGCACACGGAGGAGAACAAGCGCCGGACCTTGCAGAAGAATGACATTGCAGCTGCCAT 138 consensus_14238#0 GATGCACACGGAGGAGAACAAGCGCCGTACCTTGCAGAAGAATGACATAGCAGCTGCCAT 766 *************************** ******** *********** *********** consensus_14238#1 CACCAGGACTGATATCTATGACTTCTTGGTGGACATAGTTCCCAGGGATGAAATGAAAGA 746 consensus_14238#2 CACCAGGACTGATATCTATGACTTCTTGGTGGACATAGTTCCCAGGGATGAAATGAAAGA 224 consensus_14238#3 CACCAGGACTGATATCTATGACTTCTTGGTGGACATAGTTCCCAGGGATGAAATGAAAGA 198 consensus_14238#0 CACCAGGACGGATATGTACGATTTCTTGGTAGATATAGTTCCCAGGGATGACTTGAAGGA 826 ********* ***** ** ** ******** ** ***************** **** ** consensus_14238#1 AGAAGGGCTTGGGCTTCCGAGGGTTGGCCTACCGCCTAATGTGGGGGGCGCAGCAGACAC 806 consensus_14238#2 AGAAGGGCTTGGGCTTCCGAGGGTTGGCCTACCGCCTAATGTGGGGGGCGCAGCAGACAC 284 consensus_14238#3 AGAAGGGCTTGGGCTTCCGAGGGTTGGCCTACCGCCTAATGTGGGGGGCGCANCANACAC 258 consensus_14238#0 GGAGGGAGTTGGGCTCCCTAGGGCTGGATTGCCGCC---CTTGGGTGTCCCTGCTGACTC 883 ** ** ******* ** **** *** * ***** **** * * * * ** * consensus_14238#1 ATATCCATAT---TACTACGTGCCAGCGCAGCAGGGGCCTGGATCAGGAATGATGTACGG 863 consensus_14238#2 ATATCCATAT---TACTACGTGCCATCGCAGCAGGGGCCTGGATCAGGAATGATGTACGG 341 consensus_14238#3 ATATCCATAT---TACTACGTGCCANCGCA-CANGGGCCTGGATCTT------------- 301 consensus_14238#0 ATATCCGTATGGCTACTATGTGCCACAGCAGCAGGTCCCAGGTGCAGGAATAGCGTATGG 943 ****** *** ***** ****** *** ** * ** ** * consensus_14238#1 TGGACAGCAAGGTCACCCGGTGACGTATGTGTGGCAGCAGCCTCAAGAGCAACAGGAAGA 923 consensus_14238#2 TGGACAGCAAGGTCACCCGGTGACGTATGTGTGGCAGCAGCCTCAAGAGCAACAGGAAGA 401 consensus_14238#3 ------------------------------------------------------------ consensus_14238#0 TGGTCAGCAAGGTCATCCGGG---GTATCTGTGGCAGGATCCTCAGGAACAGCAGGAAGA 1000 consensus_14238#1 GGCCCCTGAAGAGCAGCACTCTCTGCCAGAA-AGTAGCTAAAGATGATACAGTG------ 976 consensus_14238#2 GGCCCCTGAAGAGCAGCACTCTCTGCCAGAA-AGTAGCTAAAGATGATACAGTG------ 454 consensus_14238#3 ------------------------------------------------------------ consensus_14238#0 GCCTCCTGCAGAGCAGCAAAGTGATTAAGAAGAGTAAATGATCCCTGTGAATTGTCAAGA 1060 consensus_14238#1 AAGTTGTGACATTGATATACATTGTCCTGTGAACTTAG--GGCCTCTA----AAACTCAG 1030 consensus_14238#2 AAGTTGTGACATTGATATACATTGTCCTGTGAACTTAG--GGCCTCTA----AAACTCAG 508 consensus_14238#3 ------------------------------------------------------------ consensus_14238#0 AGCTTACCACCTGATTCAGAATTTTACTTTTAGCCAGGTTGTCGTCTATTCTGAATTTAT 1120 consensus_14238#1 TGCTCTTGTCAAAACTATTCCCATGATTGTTG-------GCTGAAACGGGTAATCTGATT 1083 consensus_14238#2 TGCTCTTGTCAAAACTATTCCCATGATTGTTG-------GCTGAAACGGGTAATCTGATT 561 consensus_14238#3 ------------------------------------------------------------ consensus_14238#0 GAATAGGATTAGGATT-CTCTCATGGTAGTTGCATTTCTGCTGTAGTGGAAAAGGATTTA 1179 consensus_14238#1 AGGTCTTAGGCTTTCCTAATGTTAGTTCTGCTCTGCTATGGCAGCAGTAGAAAAAAAAAA 1143 consensus_14238#2 ACGTCTTAGGCTTTCCTAATGTTAGTTCTGCTCTGCTATGGCAGCAGTAGAAAAAAAAAA 621 consensus_14238#3 ------------------------------------------------------------ consensus_14238#0 TGACATGAGAGTATGAGACTAATGGGTTTCAGTTACTATACCGTTTCCTGTCAATCCAAA 1239 consensus_14238#1 GATTGTGATTTGGTAGGTGATT-----TGCAACTAATGTAGT--AACTGTACCT--TACC 1194 consensus_14238#2 GATTGTGATTTGGTACGTGATT-----TGCAACTAATGTAGT--AACTGTACCT--TACC 672 consensus_14238#3 ------------------------------------------------------------ consensus_14238#0 AGTTGGCCTTTGCGAGGCCATTGATATTGAACCTAATGTGGTTGAACTGCCCATGCCAAC 1299 consensus_14238#1 TTTCATCAGTTTCTA--------ATCCAATACT-CAAAAGTGCTGGCAAAAAAAAAAA-- 1243 consensus_14238#2 TTTCATCAGTTTCTA--------ATCCAATACT-CAAAAGTGCTGGCATGTGGAGACCCT 723 consensus_14238#3 ------------------------------------------------------------ consensus_14238#0 GTTTGTAAGCTCTGATGTGGGTCATTCTGTATTTCATGTTTGCATGGTTTCATGGAATCT 1359 consensus_14238#1 ------------------------------------------------------------ consensus_14238#2 TGTATGAAAAA------------------------------------------------- 734 consensus_14238#3 ------------------------------------------------------------ consensus_14238#0 TCTTTGTTTAGACAATGAAAATGTTTTACATTCGTGGCATCTGCCATAAAAAAAAAAAAA 1419 consensus_14238#1 -- consensus_14238#2 -- consensus_14238#3 -- consensus_14238#0 AA 1421 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||