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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14256#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 551 fasta sequence
[CACAGACACGTACTACGACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCG-AGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTGCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGCCGGGGTGACGGTCAACG-TCGCGCTGCTCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGC-CGCCATGGACGGCGCCTTCTCCGCCTAGTCGCTTCACAGTTTTTTCTTTTTTGTTCTTCTTCTTTTTTACTC----AAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGATTTGAAACAAGCTCATCATTCATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC]
[+] EMBL AK121297 [CACAGACACGTACTACGACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCG AGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTGCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGCCGGGGTGACGGTCAACG TCGCGCTGCTCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGC CGCCATGGACGGCGCCTTCTCCGCCTAGTCGCTTCACAGTTTTTTCTTTTTTGTTCTTCTTCTTTTTTACTC AAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGATTTGAAACAAGCTCA ]
[+] EMBL OSU25284 [ GTACTACGACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCG AGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTGCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGCCGGGGTGACGGTCAACG TCGCGCTGCTCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGC CGCCATGGACGGCGCCTTCTCCGCCTAGTCGCTTCACAGTTTTTTCTTTTTTGTTCTTCTTCTTTTTTACTC AAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCT ]
[+] EMBL OS0312A [ TACGACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCG AGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTGCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGCCGGGGTGACGGTCAACG TCGCGCTGCTCAACGTCGACCCCAAGTCCGGGCCCG CGTCG CGCCATGGACGGCGCCTTCTTCGNCTAGTCGNTTna ]
[+] EMBL OSC28441 [ CGACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCG AGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTGCAGCTCNTGGGTCGACGCCGCCGCCGNCGTCGCCGCCGCCGGGGTNACGGTCAACG TCGCGCTGCTCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGC CGCC ]
[+] EMBL OSC3136A [ CGACACCGAGTTTAAGCTNTNAGCTNTGAGGAGTGTGTCTGAGAGTNTGGTCATGGAGGACATCGCGTTGCTGGTGACGGAGGANTTCGAGAGGAAGATCAAGAGGGGGGCGCCGGGCGNAGGAGGGCGCNGCNGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTNCAGCTCGTGGGTC ]
[+] EMBL OSC30681 [ CGACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCG AGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTNCAGCTCGTGG ]
[+] EMBL AU062770 [ CGACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGNNGCGCCGGGCG AGGAGNGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCANGGTGTGCAGCTCGTGGGTCGACGCCGCCGACGCCGNCGACGCCGCCGNGGTGACGGTCAACG TTGCGCTGCTCAACGTCGACCCCAAGTCCGAGCCCGCCGTCGCACGCCA ]
[+] EMBL AU082916 [ ACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCG AGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTGCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGCCGGGGTGACGGTCAACGTTCGCGCTGCTCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGC CGCCATGGACGGCGCCTTCTCCGCCTAGTCGCTTCACAGTTTTTTCTTTTTTGTTCTTCTTCTTTTTTACTC AAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGATTTGAAACAAGCTCATCATTCATCCAAAAAAAAAAAAA ]
[+] EMBL AU163954 [ ACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCG AGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTGCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGCCGGGGTGACGGTCAACG TCGCGCTGCTCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGC CGCCATGGACGGCGCCTTCTCCG CTAGTCGCTTCACAGTTTTTTCTTTTTTGNTCTTCTTCTTTTTTACTC AAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTTCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGNCTTTTGATTTGA ]
[+] EMBL AU163965 [ ACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCG AGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTGCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCG CGGGGTGACGGTCAACG TCGCGCTGCTCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGC CGCCATGGACGGCGCCTTCTCCG CTAGTCGCTTCACAGTTTTTTCTTTTTTGNTCTTCTTCTTTTTTACTC AAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTTCTTTGAT CAGCTCGGTCACCGTGTTGATGTAAATATAGCCCCTTAAATTTTGGCNTTTGATTTGg ]
[+] EMBL AU108706 [ nAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTNTGCAGCTCGTGGNTCGACGCCGCCGCCGCCGCCGCCGCAGCCGGGGTGACGGTNAACG TCGCGCTGCTNAACGTCGACCCNAAGTCCGGGCCCGCCGTCGC CGCCATGGACGGCGCCTTCTCCGCCTAGTCGCTTCACAGTTTTTTCTTTTTTGTTCTTCTTCTTTTTTACTC AAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGATTTGAAACAAaaa ]
[+] EMBL CF330977 [ CCATGGACGGCGCCTTCTCCGCCTAGTCGCTTCACAGTTTTTTCTTTTTTGTTCTTCTTCTTTTTTACTC AAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGATTTGAAACAAGCTCATCATTCATCCAAAAAA ]
[-] EMBL CF330978 [ CATGGACGGCGCCTTCTCCGCCTAGTCGCTTCACAGTTTTTTCTTTTTTGTTCTTCTTCTTTTTTACTC AAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGATTTGAAACAAGCTCATCATTCATCCAAAAAAA ]
[+] EMBL CF327873 [ tagaaaTTTCTTTTTTGTTCTTCTTCTTTTTTACTCAAAAAAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGATTTGAAACAAGCTCATCATTCATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC]
consensusID : consensus_14256#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence
[CACGCTGTCCGTACGACACCGATTTGACTTTTATGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCGAGGAGGGCCGCGGCGGAGTCCATGGAGGAACTTCGGCGCCGTCATCAAGGTGTCCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGGGGTGACGGTCAACGTGCGCGCTGCTGCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGCCGCCATGGACGGCGCCTTCTGCCGCCTAGTCAGCTTCACAGTTTGTTTGCTGTTGTTTGTTGCTTCTTCTTTTTTGAATCAAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGATTTGAAACAAGCTCATCATTCATCCAAAAAAAAAA]
[+] EMBL BI795528 [CACGCTGTCCGTACGACACCGATTTGACTTTTATGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCGAGGAGGGCCGCGGCGGAGTCCATGGAGGAACTTCGGCGCCGTCATCAAGGTGTCCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGGGGTGACGGTCAACGTGCGCGCTGCTGCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGCCGCCATGGACGGCGCCTTCTGCCGCCTAGTCAGCTTCACAGTTTGTTTGCTGTTGTTTGTTGCTTCTTCTTTTTTGAATCAAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGATTTGAAACAAGCTCATCATTCATCCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14256#0 CACAGACACGTACTACGACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAG 60
consensus_14256#1 --CACGCTGTCCGTACGACACCGA-TTTGACTTTTATGCTTTGAGGAGTGTGTCTGAGAG 57
** * *********** ***** *** ***********************
consensus_14256#0 TTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAG 120
consensus_14256#1 TTTGGTCATG-CGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAG 116
********** *************************************************
consensus_14256#0 GGGGGCGCCGGGCGAGGAGGGCGCGGCGGCGGAGTCCA-GGAGGAACTTCGGCGCCGTCA 179
consensus_14256#1 GGGGGCGCCGGGCGAGGAGGGCC--GCGGCGGAGTCCATGGAGGAACTTCGGCGCCGTCA 174
********************** ************* *********************
consensus_14256#0 TCAAGGTGTGCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGCCGGGGTGACGG 239
consensus_14256#1 TCAAGGTGTCCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCG---GGGTGACGG 231
********* ************************************** *********
consensus_14256#0 TCAACGT-CGCGCTGCT-CAACGTCGACCCCAAGTCCGGGCCCGCCGTCGCCGCCATGGA 297
consensus_14256#1 TCAACGTGCGCGCTGCTGCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGCCGCCATGGA 291
******* ********* ******************************************
consensus_14256#0 CGGCGCCTTCT-CCGCCTAGTC-GCTTCACAGTTTTTTCTTTTTTGTT-----CTTCTTC 350
consensus_14256#1 CGGCGCCTTCTGCCGCCTAGTCAGCTTCACAGTTTGTTTGCTGTTGTTTGTTGCTTCTTC 351
*********** ********** ************ ** * ***** *******
consensus_14256#0 TTTTTT-ACTCAAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATC 409
consensus_14256#1 TTTTTTGAATCAAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATC 411
****** * ***************************************************
consensus_14256#0 TCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTG 469
consensus_14256#1 TCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTG 471
************************************************************
consensus_14256#0 TCTTTTGATTTGAAACAAGCTCATCATTCATCCAAAAAAAAAAAAAAAAAAAAAAAAAAA 529
consensus_14256#1 TCTTTTGATTTGAAACAAGCTCATCATTCATCCAAAAAAAAAA----------------- 514
*******************************************
consensus_14256#0 AAAAAAAAAAAAAAAAAAAAAC 551
consensus_14256#1 ----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||