These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14256#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 551 fasta sequence [CACAGACACGTACTACGACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCG-AGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTGCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGCCGGGGTGACGGTCAACG-TCGCGCTGCTCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGC-CGCCATGGACGGCGCCTTCTCCGCCTAGTCGCTTCACAGTTTTTTCTTTTTTGTTCTTCTTCTTTTTTACTC----AAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGATTTGAAACAAGCTCATCATTCATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC] [+] EMBL AK121297 [CACAGACACGTACTACGACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCG AGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTGCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGCCGGGGTGACGGTCAACG TCGCGCTGCTCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGC CGCCATGGACGGCGCCTTCTCCGCCTAGTCGCTTCACAGTTTTTTCTTTTTTGTTCTTCTTCTTTTTTACTC AAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGATTTGAAACAAGCTCA ] [+] EMBL OSU25284 [ GTACTACGACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCG AGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTGCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGCCGGGGTGACGGTCAACG TCGCGCTGCTCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGC CGCCATGGACGGCGCCTTCTCCGCCTAGTCGCTTCACAGTTTTTTCTTTTTTGTTCTTCTTCTTTTTTACTC AAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCT ] [+] EMBL OS0312A [ TACGACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCG AGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTGCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGCCGGGGTGACGGTCAACG TCGCGCTGCTCAACGTCGACCCCAAGTCCGGGCCCG CGTCG CGCCATGGACGGCGCCTTCTTCGNCTAGTCGNTTna ] [+] EMBL OSC28441 [ CGACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCG AGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTGCAGCTCNTGGGTCGACGCCGCCGCCGNCGTCGCCGCCGCCGGGGTNACGGTCAACG TCGCGCTGCTCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGC CGCC ] [+] EMBL OSC3136A [ CGACACCGAGTTTAAGCTNTNAGCTNTGAGGAGTGTGTCTGAGAGTNTGGTCATGGAGGACATCGCGTTGCTGGTGACGGAGGANTTCGAGAGGAAGATCAAGAGGGGGGCGCCGGGCGNAGGAGGGCGCNGCNGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTNCAGCTCGTGGGTC ] [+] EMBL OSC30681 [ CGACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCG AGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTNCAGCTCGTGG ] [+] EMBL AU062770 [ CGACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGNNGCGCCGGGCG AGGAGNGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCANGGTGTGCAGCTCGTGGGTCGACGCCGCCGACGCCGNCGACGCCGCCGNGGTGACGGTCAACG TTGCGCTGCTCAACGTCGACCCCAAGTCCGAGCCCGCCGTCGCACGCCA ] [+] EMBL AU082916 [ ACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCG AGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTGCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGCCGGGGTGACGGTCAACGTTCGCGCTGCTCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGC CGCCATGGACGGCGCCTTCTCCGCCTAGTCGCTTCACAGTTTTTTCTTTTTTGTTCTTCTTCTTTTTTACTC AAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGATTTGAAACAAGCTCATCATTCATCCAAAAAAAAAAAAA ] [+] EMBL AU163954 [ ACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCG AGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTGCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGCCGGGGTGACGGTCAACG TCGCGCTGCTCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGC CGCCATGGACGGCGCCTTCTCCG CTAGTCGCTTCACAGTTTTTTCTTTTTTGNTCTTCTTCTTTTTTACTC AAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTTCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGNCTTTTGATTTGA ] [+] EMBL AU163965 [ ACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCG AGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTGCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCG CGGGGTGACGGTCAACG TCGCGCTGCTCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGC CGCCATGGACGGCGCCTTCTCCG CTAGTCGCTTCACAGTTTTTTCTTTTTTGNTCTTCTTCTTTTTTACTC AAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTTCTTTGAT CAGCTCGGTCACCGTGTTGATGTAAATATAGCCCCTTAAATTTTGGCNTTTGATTTGg ] [+] EMBL AU108706 [ nAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTNTGCAGCTCGTGGNTCGACGCCGCCGCCGCCGCCGCCGCAGCCGGGGTGACGGTNAACG TCGCGCTGCTNAACGTCGACCCNAAGTCCGGGCCCGCCGTCGC CGCCATGGACGGCGCCTTCTCCGCCTAGTCGCTTCACAGTTTTTTCTTTTTTGTTCTTCTTCTTTTTTACTC AAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGATTTGAAACAAaaa ] [+] EMBL CF330977 [ CCATGGACGGCGCCTTCTCCGCCTAGTCGCTTCACAGTTTTTTCTTTTTTGTTCTTCTTCTTTTTTACTC AAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGATTTGAAACAAGCTCATCATTCATCCAAAAAA ] [-] EMBL CF330978 [ CATGGACGGCGCCTTCTCCGCCTAGTCGCTTCACAGTTTTTTCTTTTTTGTTCTTCTTCTTTTTTACTC AAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGATTTGAAACAAGCTCATCATTCATCCAAAAAAA ] [+] EMBL CF327873 [ tagaaaTTTCTTTTTTGTTCTTCTTCTTTTTTACTCAAAAAAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGATTTGAAACAAGCTCATCATTCATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC] consensusID : consensus_14256#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [CACGCTGTCCGTACGACACCGATTTGACTTTTATGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCGAGGAGGGCCGCGGCGGAGTCCATGGAGGAACTTCGGCGCCGTCATCAAGGTGTCCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGGGGTGACGGTCAACGTGCGCGCTGCTGCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGCCGCCATGGACGGCGCCTTCTGCCGCCTAGTCAGCTTCACAGTTTGTTTGCTGTTGTTTGTTGCTTCTTCTTTTTTGAATCAAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGATTTGAAACAAGCTCATCATTCATCCAAAAAAAAAA] [+] EMBL BI795528 [CACGCTGTCCGTACGACACCGATTTGACTTTTATGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCGAGGAGGGCCGCGGCGGAGTCCATGGAGGAACTTCGGCGCCGTCATCAAGGTGTCCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGGGGTGACGGTCAACGTGCGCGCTGCTGCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGCCGCCATGGACGGCGCCTTCTGCCGCCTAGTCAGCTTCACAGTTTGTTTGCTGTTGTTTGTTGCTTCTTCTTTTTTGAATCAAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGATTTGAAACAAGCTCATCATTCATCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14256#0 CACAGACACGTACTACGACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAG 60 consensus_14256#1 --CACGCTGTCCGTACGACACCGA-TTTGACTTTTATGCTTTGAGGAGTGTGTCTGAGAG 57 ** * *********** ***** *** *********************** consensus_14256#0 TTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAG 120 consensus_14256#1 TTTGGTCATG-CGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAG 116 ********** ************************************************* consensus_14256#0 GGGGGCGCCGGGCGAGGAGGGCGCGGCGGCGGAGTCCA-GGAGGAACTTCGGCGCCGTCA 179 consensus_14256#1 GGGGGCGCCGGGCGAGGAGGGCC--GCGGCGGAGTCCATGGAGGAACTTCGGCGCCGTCA 174 ********************** ************* ********************* consensus_14256#0 TCAAGGTGTGCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGCCGGGGTGACGG 239 consensus_14256#1 TCAAGGTGTCCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCG---GGGTGACGG 231 ********* ************************************** ********* consensus_14256#0 TCAACGT-CGCGCTGCT-CAACGTCGACCCCAAGTCCGGGCCCGCCGTCGCCGCCATGGA 297 consensus_14256#1 TCAACGTGCGCGCTGCTGCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGCCGCCATGGA 291 ******* ********* ****************************************** consensus_14256#0 CGGCGCCTTCT-CCGCCTAGTC-GCTTCACAGTTTTTTCTTTTTTGTT-----CTTCTTC 350 consensus_14256#1 CGGCGCCTTCTGCCGCCTAGTCAGCTTCACAGTTTGTTTGCTGTTGTTTGTTGCTTCTTC 351 *********** ********** ************ ** * ***** ******* consensus_14256#0 TTTTTT-ACTCAAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATC 409 consensus_14256#1 TTTTTTGAATCAAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATC 411 ****** * *************************************************** consensus_14256#0 TCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTG 469 consensus_14256#1 TCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTG 471 ************************************************************ consensus_14256#0 TCTTTTGATTTGAAACAAGCTCATCATTCATCCAAAAAAAAAAAAAAAAAAAAAAAAAAA 529 consensus_14256#1 TCTTTTGATTTGAAACAAGCTCATCATTCATCCAAAAAAAAAA----------------- 514 ******************************************* consensus_14256#0 AAAAAAAAAAAAAAAAAAAAAC 551 consensus_14256#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||