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Oryza sativa
cluster # 14256 cluster # 14256       Sequences # 15       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14256#0 length = 551 sequences # 14  
consensus_14256#1 length = 514 sequences # 1  

consensusID : consensus_14256#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 551
fasta sequence
                              [CACAGACACGTACTACGACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCG-AGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTGCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGCCGGGGTGACGGTCAACG-TCGCGCTGCTCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGC-CGCCATGGACGGCGCCTTCTCCGCCTAGTCGCTTCACAGTTTTTTCTTTTTTGTTCTTCTTCTTTTTTACTC----AAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGATTTGAAACAAGCTCATCATTCATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC]

[+] EMBL AK121297             [CACAGACACGTACTACGACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCG AGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTGCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGCCGGGGTGACGGTCAACG TCGCGCTGCTCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGC CGCCATGGACGGCGCCTTCTCCGCCTAGTCGCTTCACAGTTTTTTCTTTTTTGTTCTTCTTCTTTTTTACTC    AAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGATTTGAAACAAGCTCA                                                           ]
[+] EMBL OSU25284             [         GTACTACGACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCG AGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTGCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGCCGGGGTGACGGTCAACG TCGCGCTGCTCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGC CGCCATGGACGGCGCCTTCTCCGCCTAGTCGCTTCACAGTTTTTTCTTTTTTGTTCTTCTTCTTTTTTACTC    AAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCT                                                                               ]
[+] EMBL OS0312A              [             TACGACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCG AGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTGCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGCCGGGGTGACGGTCAACG TCGCGCTGCTCAACGTCGACCCCAAGTCCGGGCCCG CGTCG  CGCCATGGACGGCGCCTTCTTCGNCTAGTCGNTTna                                                                                                                                                                                                                                       ]
[+] EMBL OSC28441             [               CGACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCG AGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTGCAGCTCNTGGGTCGACGCCGCCGCCGNCGTCGCCGCCGCCGGGGTNACGGTCAACG TCGCGCTGCTCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGC CGCC                                                                                                                                                                                                                                                                       ]
[+] EMBL OSC3136A             [               CGACACCGAGTTTAAGCTNTNAGCTNTGAGGAGTGTGTCTGAGAGTNTGGTCATGGAGGACATCGCGTTGCTGGTGACGGAGGANTTCGAGAGGAAGATCAAGAGGGGGGCGCCGGGCGNAGGAGGGCGCNGCNGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTNCAGCTCGTGGGTC                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL OSC30681             [               CGACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCG AGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTNCAGCTCGTGG                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU062770             [               CGACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGNNGCGCCGGGCG AGGAGNGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCANGGTGTGCAGCTCGTGGGTCGACGCCGCCGACGCCGNCGACGCCGCCGNGGTGACGGTCAACG TTGCGCTGCTCAACGTCGACCCCAAGTCCGAGCCCGCCGTCGCACGCCA                                                                                                                                                                                                                                                                      ]
[+] EMBL AU082916             [                 ACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCG AGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTGCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGCCGGGGTGACGGTCAACGTTCGCGCTGCTCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGC CGCCATGGACGGCGCCTTCTCCGCCTAGTCGCTTCACAGTTTTTTCTTTTTTGTTCTTCTTCTTTTTTACTC    AAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGATTTGAAACAAGCTCATCATTCATCCAAAAAAAAAAAAA                                    ]
[+] EMBL AU163954             [                 ACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCG AGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTGCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGCCGGGGTGACGGTCAACG TCGCGCTGCTCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGC CGCCATGGACGGCGCCTTCTCCG CTAGTCGCTTCACAGTTTTTTCTTTTTTGNTCTTCTTCTTTTTTACTC    AAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTTCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGNCTTTTGATTTGA                                                                     ]
[+] EMBL AU163965             [                 ACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCG AGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTGTGCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCG CGGGGTGACGGTCAACG TCGCGCTGCTCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGC CGCCATGGACGGCGCCTTCTCCG CTAGTCGCTTCACAGTTTTTTCTTTTTTGNTCTTCTTCTTTTTTACTC    AAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTTCTTTGAT CAGCTCGGTCACCGTGTTGATGTAAATATAGCCCCTTAAATTTTGGCNTTTGATTTGg                                                                     ]
[+] EMBL AU108706             [                                                                                                                                         nAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCATCAAGGTNTGCAGCTCGTGGNTCGACGCCGCCGCCGCCGCCGCCGCAGCCGGGGTGACGGTNAACG TCGCGCTGCTNAACGTCGACCCNAAGTCCGGGCCCGCCGTCGC CGCCATGGACGGCGCCTTCTCCGCCTAGTCGCTTCACAGTTTTTTCTTTTTTGTTCTTCTTCTTTTTTACTC    AAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGATTTGAAACAAaaa                                                             ]
[+] EMBL CF330977             [                                                                                                                                                                                                                                                                                                     CCATGGACGGCGCCTTCTCCGCCTAGTCGCTTCACAGTTTTTTCTTTTTTGTTCTTCTTCTTTTTTACTC    AAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGATTTGAAACAAGCTCATCATTCATCCAAAAAA                                           ]
[-] EMBL CF330978             [                                                                                                                                                                                                                                                                                                      CATGGACGGCGCCTTCTCCGCCTAGTCGCTTCACAGTTTTTTCTTTTTTGTTCTTCTTCTTTTTTACTC    AAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGATTTGAAACAAGCTCATCATTCATCCAAAAAAA                                          ]
[+] EMBL CF327873             [                                                                                                                                                                                                                                                                                                                                       tagaaaTTTCTTTTTTGTTCTTCTTCTTTTTTACTCAAAAAAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGATTTGAAACAAGCTCATCATTCATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC]


>consensus_14256#0 CACAGACACGTACTACGACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAG TTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAG GGGGGCGCCGGGCGAGGAGGGCGCGGCGGCGGAGTCCAGGAGGAACTTCGGCGCCGTCAT CAAGGTGTGCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGCCGGGGTGACGGT CAACGTCGCGCTGCTCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGCCGCCATGGACGG CGCCTTCTCCGCCTAGTCGCTTCACAGTTTTTTCTTTTTTGTTCTTCTTCTTTTTTACTC AAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTT GATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGATTT GAAACAAGCTCATCATTCATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAC



consensusID : consensus_14256#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence
                              [CACGCTGTCCGTACGACACCGATTTGACTTTTATGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCGAGGAGGGCCGCGGCGGAGTCCATGGAGGAACTTCGGCGCCGTCATCAAGGTGTCCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGGGGTGACGGTCAACGTGCGCGCTGCTGCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGCCGCCATGGACGGCGCCTTCTGCCGCCTAGTCAGCTTCACAGTTTGTTTGCTGTTGTTTGTTGCTTCTTCTTTTTTGAATCAAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGATTTGAAACAAGCTCATCATTCATCCAAAAAAAAAA]

[+] EMBL BI795528             [CACGCTGTCCGTACGACACCGATTTGACTTTTATGCTTTGAGGAGTGTGTCTGAGAGTTTGGTCATGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGGGCGCCGGGCGAGGAGGGCCGCGGCGGAGTCCATGGAGGAACTTCGGCGCCGTCATCAAGGTGTCCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGGGGTGACGGTCAACGTGCGCGCTGCTGCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGCCGCCATGGACGGCGCCTTCTGCCGCCTAGTCAGCTTCACAGTTTGTTTGCTGTTGTTTGTTGCTTCTTCTTTTTTGAATCAAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGATTTGAAACAAGCTCATCATTCATCCAAAAAAAAAA]


>consensus_14256#1 CACGCTGTCCGTACGACACCGATTTGACTTTTATGCTTTGAGGAGTGTGTCTGAGAGTTT GGTCATGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAGGGGG GCGCCGGGCGAGGAGGGCCGCGGCGGAGTCCATGGAGGAACTTCGGCGCCGTCATCAAGG TGTCCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGGGGTGACGGTCAACGTGC GCGCTGCTGCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGCCGCCATGGACGGCGCCTT CTGCCGCCTAGTCAGCTTCACAGTTTGTTTGCTGTTGTTTGTTGCTTCTTCTTTTTTGAA TCAAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATCTCTCCTCCT TTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTGTCTTTTGAT TTGAAACAAGCTCATCATTCATCCAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14256#0      CACAGACACGTACTACGACACCGAGTTTGAGCTTTGAGCTTTGAGGAGTGTGTCTGAGAG 60
consensus_14256#1      --CACGCTGTCCGTACGACACCGA-TTTGACTTTTATGCTTTGAGGAGTGTGTCTGAGAG 57
                         **  *      *********** *****  ***  ***********************

consensus_14256#0      TTTGGTCATGGCGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAG 120
consensus_14256#1      TTTGGTCATG-CGGACATCGCGTTGCTGGTGACGGAGGAGTTCGAGAGGAAGCTCAAGAG 116
                       ********** *************************************************

consensus_14256#0      GGGGGCGCCGGGCGAGGAGGGCGCGGCGGCGGAGTCCA-GGAGGAACTTCGGCGCCGTCA 179
consensus_14256#1      GGGGGCGCCGGGCGAGGAGGGCC--GCGGCGGAGTCCATGGAGGAACTTCGGCGCCGTCA 174
                       **********************   ************* *********************

consensus_14256#0      TCAAGGTGTGCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCGCCGGGGTGACGG 239
consensus_14256#1      TCAAGGTGTCCAGCTCGTGGGTCGACGCCGCCGCCGCCGCCGCCGCCG---GGGTGACGG 231
                       ********* **************************************   *********

consensus_14256#0      TCAACGT-CGCGCTGCT-CAACGTCGACCCCAAGTCCGGGCCCGCCGTCGCCGCCATGGA 297
consensus_14256#1      TCAACGTGCGCGCTGCTGCAACGTCGACCCCAAGTCCGGGCCCGCCGTCGCCGCCATGGA 291
                       ******* ********* ******************************************

consensus_14256#0      CGGCGCCTTCT-CCGCCTAGTC-GCTTCACAGTTTTTTCTTTTTTGTT-----CTTCTTC 350
consensus_14256#1      CGGCGCCTTCTGCCGCCTAGTCAGCTTCACAGTTTGTTTGCTGTTGTTTGTTGCTTCTTC 351
                       *********** ********** ************ **   * *****     *******

consensus_14256#0      TTTTTT-ACTCAAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATC 409
consensus_14256#1      TTTTTTGAATCAAAAAAAAAGATAAGTTAATTAGGAGGAGGAACTAGTCTATTATGTATC 411
                       ****** * ***************************************************

consensus_14256#0      TCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTG 469
consensus_14256#1      TCTCCTCCTTTGATACAGCTCGGTCACCGTGTTGATGTAAATATAGCCGCTTAATTTTTG 471
                       ************************************************************

consensus_14256#0      TCTTTTGATTTGAAACAAGCTCATCATTCATCCAAAAAAAAAAAAAAAAAAAAAAAAAAA 529
consensus_14256#1      TCTTTTGATTTGAAACAAGCTCATCATTCATCCAAAAAAAAAA----------------- 514
                       *******************************************                 

consensus_14256#0      AAAAAAAAAAAAAAAAAAAAAC 551
consensus_14256#1      ----------------------
                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)