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Oryza sativa
cluster # 14257 cluster # 14257       Sequences # 15       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14257#0 length = 1015 sequences # 3  
consensus_14257#1 length = 631 sequences # 8  
consensus_14257#2 length = 592 sequences # 1  
consensus_14257#3 length = 492 sequences # 2  
consensus_14257#4 length = 227 sequences # 1  

consensusID : consensus_14257#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1015
fasta sequence
                              [TTCGTTTATTTGTTTTCCGCGAAACGCACGGCGTCACGAGTCCAGCAAACAGCAAGAGAAGAGAAGAGAAGAGAAGAGAACGCGTCCCGCTTCCGACTCCGGCGAGAGCGAGACCGAGAGCGCGCGGCGGCGGCGGCGGCCGGAGGAGGAGAAGACGATGGGTTGCTGCTGCCGGTGCCTGGAGATCCTCTGCGCCATCCTCCTCCCACCGCTCGGCGTCTGCCTCCGCCATGGCTGCTGCACCATGGAGTTCTGGATTAGCGTGCTGCTCACCATCCTCGGGTACCTCCCCGGCGTCCTCTACGCCGTCTACGTCATCGTCTCCGTCGACCCCGACCGCGAACGCCGCCGCCGCGTCGACCCCGACGAATACATCTACGTCG-----CC-TGACCATCTGTGGAGTACTTAGTAGGTGATTAATTTAGCTCCTGGAAAGCATATCCTTGTTCCTAAGTCCTATTACCTATATCTGNTCCTGTTCAACCTTCAATTTGTAAACTGGTACTACTACATCTTAAATTTGTAGTTCAACTGTGTTACTGTGACCGTGTCATTGCTGGATCCACCGCTCCTCACTTCCGGTTGTCTTAGCTGTCTGGATTTATTTGCAGGCTCGAATGAAGATTTGTTATTTCTTTTATTGAGATTTGTTTGTTCTTGTAAGCTCTCTACTTTTGTGATTTGCCAACGACGCTTTTCTTAATTCGATTTACAGATAGTGCAGCTCGCAATCGTAGTGCTTATCTGTGTATAAATGATGACGAGTGGTTGCGTGCGGCTCGTGAAAGGGCTGCGCTCTATAACTAATGGTACCATTATCCGATTTTTTGCGGGCTTGAGTGTAGTTGCGTTATGTATATTGCGAACGCTGTTTTCATGCCCTATTCGTTCCTCTCTAACTCCTTCCGTCTATATAGTGTATTGTGCGTTGATTGGTTCACTCATTTGTCTGAGATCTGTTCGCGCTGTTGCTGGTTTGTGCGATGCTTCATTGGTTAGTTTGTAGTTGTGTTTGAC]

[-] EMBL AU197966             [TTCGTTTATTTGTTTTCCGCGAAACGCACGGCGTCACGAGTCCAGCAAACAGCAAGAGAAGAGAAGAGAAGAGAAGAGAACGCGTCCCGCTTCCGACTCCGGCGAGAGCGAGACCGAGAGCGCGCGGCGGCGGCGGCGGCCGGAGGAGGAGAAGACGATGGGTTGCTGCTGCCGGTGCCTGGAGATCCTCTGCGCCATCCTCCTCCCACCGCTCGGCGTCTGCCTCCGCCATGGCTGCTGCACCATGGAGTTCTGGATTAGCGTGCTGCTCACCATCCTCGGGTACCTCCCCGGCGTCCTCTACGCCGTCTACGTCATCGTCTCCGTCGACCCCGACCGCGAACGCCGCCGCCGCGTCGACCCCGACGAATACATCTACGTCG     CC TGACCATCTGTGGAGTACTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL OSS12054A            [                                                        AGAAGAGAAGAGAAGAGAAGAGAACGCGTCCCGCTTCCGACTCCGGCGAGAGCGAGACCGAGAGCGCGCGGCGGCGGCGGCGGCCGGAGGAGGAGAAGACGATGGGTTGCTGCTGCCGGTGCCTGGAGATCCTCTGCGCCATCCTCCTCCCACCGCTCGGCGTCTGCCTCCGCCATGGCTGCTGCACCATGGAGTTCTGGATTAGCGTGCTGCTCACCATCCTCGGGTACCTCCCCGGCGTCCTCTACGCCGTCTACGTCATCGTCTCCGTCGACCCCGACCGCGAACGCCGCCGTCGCGTCGACCCCGACGAATACATCTACGTCG     CC TGACCATCTGTGGAGTACTTAGTAGGTGATTAATTTAGCTCCTGGAAAGCATATCCTTGTTCCTAAGTCCTATTACCTATATCTGNTCCTGTTCAACCTTCAATTTGTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BE040039             [                                                           agcaAACAGCA AGAGGAGAACGCGTCCCGCATCCAACTCCGGC  GAGCGAGACCGAGAGCGCGCGGCGGCGGCGGCGGCCGGAGGAGGAGGAGACGATGGGTTGCTGCTGCCGGTGCCTGGAGATCCTCTGCGCCATCCTACTCCCGCCGCTCGGCGTCTGCCTCCGCCATGGCTGCTGCACCATGGAGTTCTGGATTAGCGTGCTGCTCACCATCCTCGGCTACCTCCCCGGCGTCCTCTACGCCGTCTACGTCATCGTCTCCGTCGACCCCGACCGCGAGCGCCGCCGCCGCGTCGACCCCGACGAATACATCTACGTCGCGTGACCATGACCATCTGTGGAG    TAGTAGG    TAA TTAGCTACTGGAAAGCATGTCCTTGTCCCT AGTTC   TACC  TATCTG   C  TT ACCCTTAAATTTGTAAACTGGTACTACTACATCTTAAATTTGTAGTTCAACTGTGTTACTGTGACCGTGTCATTGCTGGATCCACCGCTCCTCACTTCCGGTTGTCTTAGCTGTCTGGATTTATTTGCAGGCTCGAATGAAGATTTGTTATTTCTTTTATTGAGATTTGTTTGTTCTTGTAAGCTCTCTACTTTTGTGATTTGCCAACGACGCTTTTCTTAATTCGATTTACAGATAGTGCAGCTCGCAATCGTAGTGCTTATCTGTGTATAAATGATGACGAGTGGTTGCGTGCGGCTCGTGAAAGGGCTGCGCTCTATAACTAATGGTACCATTATCCGATTTTTTGCGGGCTTGAGTGTAGTTGCGTTATGTATATTGCGAACGCTGTTTTCATGCCCTATTCGTTCCTCTCTAACTCCTTCCGTCTATATAGTGTATTGTGCGTTGATTGGTTCACTCATTTGTCTGAGATCTGTTCGCGCTGTTGCTGGTTTGTGCGATGCTTCATTGGTTAGTTTGTAGTTGTGTTTGAC]


>consensus_14257#0 TTCGTTTATTTGTTTTCCGCGAAACGCACGGCGTCACGAGTCCAGCAAACAGCAAGAGAA GAGAAGAGAAGAGAAGAGAACGCGTCCCGCTTCCGACTCCGGCGAGAGCGAGACCGAGAG CGCGCGGCGGCGGCGGCGGCCGGAGGAGGAGAAGACGATGGGTTGCTGCTGCCGGTGCCT GGAGATCCTCTGCGCCATCCTCCTCCCACCGCTCGGCGTCTGCCTCCGCCATGGCTGCTG CACCATGGAGTTCTGGATTAGCGTGCTGCTCACCATCCTCGGGTACCTCCCCGGCGTCCT CTACGCCGTCTACGTCATCGTCTCCGTCGACCCCGACCGCGAACGCCGCCGCCGCGTCGA CCCCGACGAATACATCTACGTCGCCTGACCATCTGTGGAGTACTTAGTAGGTGATTAATT TAGCTCCTGGAAAGCATATCCTTGTTCCTAAGTCCTATTACCTATATCTGNTCCTGTTCA ACCTTCAATTTGTAAACTGGTACTACTACATCTTAAATTTGTAGTTCAACTGTGTTACTG TGACCGTGTCATTGCTGGATCCACCGCTCCTCACTTCCGGTTGTCTTAGCTGTCTGGATT TATTTGCAGGCTCGAATGAAGATTTGTTATTTCTTTTATTGAGATTTGTTTGTTCTTGTA AGCTCTCTACTTTTGTGATTTGCCAACGACGCTTTTCTTAATTCGATTTACAGATAGTGC AGCTCGCAATCGTAGTGCTTATCTGTGTATAAATGATGACGAGTGGTTGCGTGCGGCTCG TGAAAGGGCTGCGCTCTATAACTAATGGTACCATTATCCGATTTTTTGCGGGCTTGAGTG TAGTTGCGTTATGTATATTGCGAACGCTGTTTTCATGCCCTATTCGTTCCTCTCTAACTC CTTCCGTCTATATAGTGTATTGTGCGTTGATTGGTTCACTCATTTGTCTGAGATCTGTTC GCGCTGTTGCTGGTTTGTGCGATGCTTCATTGGTTAGTTTGTAGTTGTGTTTGAC



consensusID : consensus_14257#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 631
fasta sequence
                              [TCACGAGTCCAGCAAACAGCAAGAGAAGAGAAGAGAA-GAGAAG-AGAACGCGTCCCGCTTCCGACTCCGGCGAGAGCGAGACCGAGAGCGCGCGGCGGCGGCGGCGGCCGGAGG-AGGAGAAGACGATGGGTTGCTGCTGCCGG-TGCCT-GGAGAT-CCTCTGCGCCATCCTCCTCCCACCGCTCGGCGTCTGCC-TCCGCCATGGCTGCTGCACCATGGAGTTCTGGATTAGCGTGCTGCTCACCATCCTCGGGTACCT-CCCCGGCGTCCTCTACGCCGTCTACGTCATCGTCTCCGTCGACCCCGACCGCGAACGCCGCCGCCGCGTCGACCCCGACGAATACATCTACGTCGCCTGACCATCTGTGGAGTACTTAGTAGGTGATTAATTTAGCTCCTGGAAAGCATATCCTTGTTCCTAGTCCTATTACCTATATCTGCTCCTGTTCCACCCTTCAATTTGTAAACTGGTACTAGCACATCTGCAGCCTTTGGACAAGTCGAATCGGGTCGGAATTTGTTACCGTAGTTCAACTGTGTTACTGTGACCGTTTGATTGCTGGATCAATTGCTCTCAAGTCTCAACTTGTGTTGTTCTTCAGTTGCTGAATTTATTGACAGCCTGAAATGAGGAT]

[+] EMBL AU197417             [TCACGAGTCCAGCAAACAGCAAGAGAAGAGAAGAGAA GAGAAG AGAACGCGTCCCGCTTCCGACTCCGGCGAGAGCGAGACCGAGAGCGCGCGGCGGCGGCGGCGGCCGGAGG AGGAGAAGACGATGGGTTGCTGCTGCCGG TGCCT GGAGAT CCTCTGCGCCATCCTCCTCCCACCGCTCGGCGTCTGCC TCCGCCATGGCTGCTGCACCATGGAGTTCTGGATTAGCGTGCTGCTCACCATCCTCGGGTACCT CCCCGGCGTCCTCNACGCCGTCTACGTCATCGTCTCCGTCGACCCCGACCGCGAACACCGCCGCCGCGTCGACNCCGACGAATACATCTACGTCGCCTGACCATCTGTGGAGTACTTAGTAGGTGATTAATTTAGCTCCTGGAAAGCATATCCTTGTTCCTAGTCCTATTACCTATATCTGCTCCTGTTCCACCCTTCAATTTGTAAACTGGTACTAGCACATCTGCAGCCTTTGGACAAGTCGAAT                                                                                                                                 ]
[+] EMBL CF276626             [                  ttttGAGAAGAGAAGAGAA GAGAAG AGAACGCGTCCCGCTTCCGACTCCGGCGAGAGCGAGACCGAGAGCGCGCGGCGGCGGCGGCGGCCGGAGG AGGAGAAGACGATGGGTTGCTGCTGCCGG TGCCT GGAGAT CCTCTGCGCCATCCTCCTCCCACCGCTCGGCGTCTGCC TCCGCCATGGCTGCTGCACCATGGAGTTCTGGATTAGCGTGCTGCTCACCATCCTCGGGTACCT CCCCGGCGTCCTCTACGCCGTCTACGTCATCGTCTCCGTCGACCCCGACCGCGAACGCCGCCGCCGCGTCGACCCCGACGAATACATCTACGTCGCCTGACCATCTGTGGAGTACTTAGTAGGTGATTAATTTAGCTCCTGGAAAGCATATCCTTGTTCCTAGTCCTATTACCTATATCTGCTCCTGTTCCACCCTTCAATTTGTAAACTGGTACTAGCACATCTGCAGCCTTTGGACAAGTCGAATCGGGTCGGAATTTGTTACCGTAGTTCAACTGTGTTACTGTGACCGTTTGATTGCTGGATCAATTGCTCTCAAGTCTCAACT                                                ]
[+] EMBL CF291729             [                            tggactGAAGGAGTAGAAAAACGCGTCCCGCTTCCGACTCCGGAGAGAGCGAGACCGAGAGCGCGCGGCGGCGGCGGCGGCCGGAGG AGGAGAAGACGATGGGTTGCTGCTGCCGG TGCCT GGAGAT CCTCTGCGCCATCCTCCTCCCACCGCTCGGCGTCTGCC TCCGCCATGGCTGCTGCACCATGGAGTTCTGGATTAGCGTGCTGCTCACCATCCTCGGGTACCT CCCCGGCGTCCTCTACGCCGTCTACGTCATCGTCTCCGTCGACCCCGACCGCGAACGCCGCCGCCGCGTCGACCCCGACGAATACATCTACGTCGCCTGACCATCTGTGGAGTACTTAGTAGGTGATTAATTTAGCTCCTGGAAAGCATATCCTTGTTCCTAGTCCTATTACCTATATCTGCTCCTGTTCCACCCTTCAATTTGTAAACTGGTACTAGCACATCT                                                                                                                                                       ]
[+] EMBL OSC21501             [                                                ncnaGTCCCGCTTCCGACTCCGGCGAGAGCGAGACCGAGAGCGCGCGGCGGCGGCGGCGGCCGNAGN AGGAGAAGACGATGGGTTGCTGCTGCCGG TGCCT GGAGAT CCTCTGCGCCATCCTCCTCCCACCGNTCGGCGTCTNCC TNCGNCATGGCTGCTGCACCATGGAGTTCTGGATTAGCGTGCTGCTCACCATCCTCGGGTACCT CCCCGGCGTCCTCTACGNNGTCTACGTNATCGTCTCCGTCGACCCCGACCGCGAACGTCGNCGNCGCGTCGACCCCGACGAATACATCTACGTTGCCTGA                                                                                                                                                                                                                                                                                    ]
[+] EMBL C97817               [                                                            TCCGACTCCGGCGAGA NNAGACCGAGAGCNCGCGGC GCGCNGNCGGCCGATGG AGGAGAAGACGATGGGTTGCTGCTGCCGG TGCCT GGAGAT CCTCTGCGCCATCCTCCTCCCACCGCTCGGCGTCTG C TCCGCCATGGCTGCTGCACCATGGAGTTCTGGATTAGCGTGCTGCTCACCATCCTCGGGTACCT CCCCGGCGTCCTCTACG CGTCTACGTCATCGTCTCCGTCGACCCCGACCGCGAACG CGCCGCCGNGT GACCCCNACGAATACATCTACGTCGCCTGACCATCTGTGGAGTACTTAGTAGGTGATTAATTTAGCTNCTGGAAAGNATATCCTTGTTCCTAGTCCTATTACCTATATCTGCTCCTGTTCCAACCTTCAATTTGTAAc                                                                                                                                                                        ]
[+] EMBL D43023               [                                                             CCGACTCCGGCGAGAGCGAGANCGAGAGCGNGCGGCGGCGGCGGNGGGCGNAGG AGGAGAAGACGATGGGTTNCTGCTGCCGG TNCCT GGAGAT CCTCTGCGCCATCCTCCTCCCACCNCTCGGCGTCTGCC TCCGCCATGGCTGCTGCACCATGGAGTTCTGGATTAGCGTNCTTCTCACCATNCTCGGGTACCT CCCCGNCGTCCTNTACGNCGTCTACGT                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AK121018             [                                                                           AGCGAGACCGAGAGCGCGCGGCGGCGGCGGCGGCCGGAGG AGGAGAAGACGATGGGTTGCTGCTGCCGG TGCCT GGAGAT CCTCTGCGCCATCCTCCTCCCACCGCTCGGCGTCTGCC TCCGCCATGGCTGCTGCACCATGGAGTTCTGGATTAGCGTGCTGCTCACCATCCTCGGGTACCT CCCCGGCGTCCTCTACGCCGTCTACGTCATCGTCTCCGTCGACCCCGACCGCGAACGCCGCCGCCGCGTCGACCCCGACGAATACATCTACGTCGCCTGACCATCTGTGGAGTACTTAGTAGGTGATTAATTTAGCTCCTGGAAAGCATATCCTTGTTCCTAGTCCTATTACCTATATCTGCTCCTGTTCCACCCTTCAATTTGTAAACTGGTACTAGCACATCTGCAGCCTTTGGACAAGTCGAATCGGGTCGGAATTTGTTACCGTAGTTCAACTGTGTTACTGTGACCGTTTGATTGCTGGATCAATTGCTCTCAAGTCTCAACTTGTGTTGTTCTTCAGTTGCTGAATTTATTGACAGCCTGAAATGAGGAT]
[+] EMBL C97818               [                                                                                                             ggaAGGAAGGAGAAGACGATGGGTTGCTGCTGCCGGTTGCCTGGGAGATCCCTTTGCGCCATCCTCNTCCCACCGCTCGGCGTCTGCCTTCCGCCATGGCTGCTGCACCATGGAGTTCTGGATTAGCGTGCTGCTCACCATCCTCGGGTACCTCCCCCGNCGTCCTCTACGCCGTCTACGTCATCGTCTCCGTCGACCCCGACCGCGAACGCCGCCGCCGCNTCGACCCCGACGAATACATCTACGTCGCCTGACCATCTGTGGAGTACTTAGTAGGTGATTAATTTAGCTCCTGGAAAGCATATCCTTGTTCCTAGTCCTATTACCTATATCTGCTCCTGTTCCACCCTTCAATTTGTAAACTGGTACTAGCACATCTGCAGCCTTTGGACAAGTCGAATCGGGTCGGAATTTGTTACCGTAGTTCAACTGTGTTACTGTGACCGTTTGATTGCTGGATCAATTGCTCTCAAaaaa                                                     ]


>consensus_14257#1 TCACGAGTCCAGCAAACAGCAAGAGAAGAGAAGAGAAGAGAAGAGAACGCGTCCCGCTTC CGACTCCGGCGAGAGCGAGACCGAGAGCGCGCGGCGGCGGCGGCGGCCGGAGGAGGAGAA GACGATGGGTTGCTGCTGCCGGTGCCTGGAGATCCTCTGCGCCATCCTCCTCCCACCGCT CGGCGTCTGCCTCCGCCATGGCTGCTGCACCATGGAGTTCTGGATTAGCGTGCTGCTCAC CATCCTCGGGTACCTCCCCGGCGTCCTCTACGCCGTCTACGTCATCGTCTCCGTCGACCC CGACCGCGAACGCCGCCGCCGCGTCGACCCCGACGAATACATCTACGTCGCCTGACCATC TGTGGAGTACTTAGTAGGTGATTAATTTAGCTCCTGGAAAGCATATCCTTGTTCCTAGTC CTATTACCTATATCTGCTCCTGTTCCACCCTTCAATTTGTAAACTGGTACTAGCACATCT GCAGCCTTTGGACAAGTCGAATCGGGTCGGAATTTGTTACCGTAGTTCAACTGTGTTACT GTGACCGTTTGATTGCTGGATCAATTGCTCTCAAGTCTCAACTTGTGTTGTTCTTCAGTT GCTGAATTTATTGACAGCCTGAAATGAGGAT



consensusID : consensus_14257#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 592
fasta sequence
                              [GTCGTCGCGCATCCAACTCCGGCGAGCGAGACCGAGAGCGCGCGGCGGCGGCGGCTGTCGGAGGAGGAGGAGACGATGGGTTGCTGCTGCCGGTGCCTGGAGATTCTCTGCGCCATCCTACTCCCGCCGCTCGGCGTCTGTCTCCGCCATGGTTGCTGCACCATGGAGTTCTGGATTAGCGTGCTGCTCACCATCCTCTGCTACCTCCCCGGCGTCCTCTACGCCGTCTACTGTATCGTTTTCGCTTACCCCTACCGCTAGCGCTGTCGACGTTTCTACCTCTACTCTTTCCATTTACTTTGTCTTGACCATGTCCTCTCTGTGCATTTTTTTCGTTATTACTCTCTTGCATCGCATGTATTTTGCCTCATGATTTACCCTTTCTGATCTCCCCTCTATATTCTCTACCTCGTTCTACCTCCTTCTTATATTTCCATCTTCATCTGTGTCTCTCGTTACTTCTTTCACCGTCTTTATCCATTTTCTCCTTTCTTCTTTTCTATGTCTCTTCTGTTTGCTGCACTTAATTAGTCACGTCTTAAATCGTGTTTTCGCCATTCTATTTCTCATACAATCTTCTCTCATCCTTCTT]

[+] EMBL BE040796             [GTCGTCGCGCATCCAACTCCGGCGAGCGAGACCGAGAGCGCGCGGCGGCGGCGGCTGTCGGAGGAGGAGGAGACGATGGGTTGCTGCTGCCGGTGCCTGGAGATTCTCTGCGCCATCCTACTCCCGCCGCTCGGCGTCTGTCTCCGCCATGGTTGCTGCACCATGGAGTTCTGGATTAGCGTGCTGCTCACCATCCTCTGCTACCTCCCCGGCGTCCTCTACGCCGTCTACTGTATCGTTTTCGCTTACCCCTACCGCTAGCGCTGTCGACGTTTCTACCTCTACTCTTTCCATTTACTTTGTCTTGACCATGTCCTCTCTGTGCATTTTTTTCGTTATTACTCTCTTGCATCGCATGTATTTTGCCTCATGATTTACCCTTTCTGATCTCCCCTCTATATTCTCTACCTCGTTCTACCTCCTTCTTATATTTCCATCTTCATCTGTGTCTCTCGTTACTTCTTTCACCGTCTTTATCCATTTTCTCCTTTCTTCTTTTCTATGTCTCTTCTGTTTGCTGCACTTAATTAGTCACGTCTTAAATCGTGTTTTCGCCATTCTATTTCTCATACAATCTTCTCTCATCCTTCTT]


>consensus_14257#2 GTCGTCGCGCATCCAACTCCGGCGAGCGAGACCGAGAGCGCGCGGCGGCGGCGGCTGTCG GAGGAGGAGGAGACGATGGGTTGCTGCTGCCGGTGCCTGGAGATTCTCTGCGCCATCCTA CTCCCGCCGCTCGGCGTCTGTCTCCGCCATGGTTGCTGCACCATGGAGTTCTGGATTAGC GTGCTGCTCACCATCCTCTGCTACCTCCCCGGCGTCCTCTACGCCGTCTACTGTATCGTT TTCGCTTACCCCTACCGCTAGCGCTGTCGACGTTTCTACCTCTACTCTTTCCATTTACTT TGTCTTGACCATGTCCTCTCTGTGCATTTTTTTCGTTATTACTCTCTTGCATCGCATGTA TTTTGCCTCATGATTTACCCTTTCTGATCTCCCCTCTATATTCTCTACCTCGTTCTACCT CCTTCTTATATTTCCATCTTCATCTGTGTCTCTCGTTACTTCTTTCACCGTCTTTATCCA TTTTCTCCTTTCTTCTTTTCTATGTCTCTTCTGTTTGCTGCACTTAATTAGTCACGTCTT AAATCGTGTTTTCGCCATTCTATTTCTCATACAATCTTCTCTCATCCTTCTT



consensusID : consensus_14257#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 492
fasta sequence
                              [CGGCGGCCGGAGGAGGAGAAGACGATGGGTTGCTGCTGCCGGTGCCTGGAGATCCTCTGCGCCATCCTCCTCCCACCGCTCGGCGTNTGCCTCCGCCATGGCTGCTGCACCATGGAGTTNTGGATTAGCGTGCTGCTCACCATCCTCGGGTACCTCCCCGGCGTCCTNTACGCCGTCTACGTCATCGTCTCCGTCGACCCCGACCGCGAACGCCGCCGCCGCGTCGACCCCGACGAATACATCTACGTCGCCTGACCATCTGTGGAGTACTTAGTAGGTGATTAATTTAGCTCCTGGAAAGCATATCCTTGTTCCTAGTCCTATTACCTATATCTGCTCCTGTTCCACCCTTCAATTTGTAAACTGGTACTAGCACATCTGCAGCCTTTGGACAAGTCGAATCGGGTCGGAATTTGTTACCGTNGTTCAACTGTGTTACTGTGACCGTTTGATTGCTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU070778             [CGGCGGCCGGAGGAGGAGAAGACGATGGGTTGCTGCTGCCGGTGCCTGGAGATCCTCTGCGCCATCCTCCTCCCACCGCTCGGCGTNTGCCTCCGCCATGGCTGCTGCACCATGGAGTTNTGGATTAGCGTGCTGCTCACCATCCTCGGGTACCTCCCCGGCGTCCTNTACGCCGTCTACGTCATCGTCTCCGTCGACCCCGACCGCGAACGCCGCCGCCGCGTCGACCCCGACGAATACATCTACGTCGCCTGACCATCTGTGGAGTACTTAGTAGGTGATTAATTTAGCTCCTGGAAAGCATATCCTTGTTCCTAGTCCTATTACCTATATCTGCTCCTGTTCCACCCTTCAATTTGTAAACTGGTACTAGCACATCTGCAGCCTTTGGACAAGTCGAATCGGGTCGGAATTTGTTACCGTNGTTCAACTGTGTTACTGTGACCGTTTGATTGCTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF315170             [                                                                                                                                                                                                                                                       TCGCCTGACCATCTGTGGAGTACTTAGTAGGTGATTAATTTAGCTCCTGGAAAGCATATCCTTGTTCCTAGTCCTATTACCTATATCTGCTCCTGTTCCACCCTTCAATTTGTAAACTGGTACTAGCACATCTGCAGCCTTTGGACAAGTCGAATCGGGTCGGAA                                                                                ]


>consensus_14257#3 CGGCGGCCGGAGGAGGAGAAGACGATGGGTTGCTGCTGCCGGTGCCTGGAGATCCTCTGC GCCATCCTCCTCCCACCGCTCGGCGTNTGCCTCCGCCATGGCTGCTGCACCATGGAGTTN TGGATTAGCGTGCTGCTCACCATCCTCGGGTACCTCCCCGGCGTCCTNTACGCCGTCTAC GTCATCGTCTCCGTCGACCCCGACCGCGAACGCCGCCGCCGCGTCGACCCCGACGAATAC ATCTACGTCGCCTGACCATCTGTGGAGTACTTAGTAGGTGATTAATTTAGCTCCTGGAAA GCATATCCTTGTTCCTAGTCCTATTACCTATATCTGCTCCTGTTCCACCCTTCAATTTGT AAACTGGTACTAGCACATCTGCAGCCTTTGGACAAGTCGAATCGGGTCGGAATTTGTTAC CGTNGTTCAACTGTGTTACTGTGACCGTTTGATTGCTGGAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA



consensusID : consensus_14257#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 227
fasta sequence
                              [ATGGATTGAAGGAGTAGAAACATTTACGTCGCCAGACCATCTGTGGAGTACTTAGTAGGTGATTAATTTAGCTCCTGGAAAGCATATCCTTGTTTCCTAGTCGTATTACCAAAATTTGCTCCTGTTCCACCCTTCAATTTGTTAAGTGGTTTTAGCCCATTTACAACCTTTGAAAAAATAAAATAGGGTAGAAATTTGTTACCGTAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF315169             [ATGGATTGAAGGAGTAGAAACATTTACGTCGCCAGACCATCTGTGGAGTACTTAGTAGGTGATTAATTTAGCTCCTGGAAAGCATATCCTTGTTTCCTAGTCGTATTACCAAAATTTGCTCCTGTTCCACCCTTCAATTTGTTAAGTGGTTTTAGCCCATTTACAACCTTTGAAAAAATAAAATAGGGTAGAAATTTGTTACCGTAAAAAAAAAAAAAAAAAAAAAA]


>consensus_14257#4 ATGGATTGAAGGAGTAGAAACATTTACGTCGCCAGACCATCTGTGGAGTACTTAGTAGGT GATTAATTTAGCTCCTGGAAAGCATATCCTTGTTTCCTAGTCGTATTACCAAAATTTGCT CCTGTTCCACCCTTCAATTTGTTAAGTGGTTTTAGCCCATTTACAACCTTTGAAAAAATA AAATAGGGTAGAAATTTGTTACCGTAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14257#3      ------------------------------------------------------------
consensus_14257#4      ------------------------------------------------------------
consensus_14257#1      ---------------------------------TCACGAGTCCAGCAAACAGCAAGAGAA 27
consensus_14257#0      TTCGTTTATTTGTTTTCCGCGAAACGCACGGCGTCACGAGTCCAGCAAACAGCAAGAGAA 60
consensus_14257#2      ------------------------------------------------------------
                                                                                   

consensus_14257#3      ------------------------------------------------------------
consensus_14257#4      ------------------------------------------------------------
consensus_14257#1      GAGAAGAGAAGAGAAGAGAACGCGTCCCGCTTCCGACTCCGGCGAGAGCGAGACCGAGAG 87
consensus_14257#0      GAGAAGAGAAGAGAAGAGAACGCGTCCCGCTTCCGACTCCGGCGAGAGCGAGACCGAGAG 120
consensus_14257#2      ----------------------GTCGTCGCGCATCCAACTCCGGCGAGCGAGACCGAGAG 38
                                                                                   

consensus_14257#3      -------------CGGCGGCCGGAGGAGGAGAAGACGATGGGTTGCTGCTGCCGGTGCCT 47
consensus_14257#4      ------------------------------------------------------------
consensus_14257#1      CGCGCGGCGGCGGCGGCGGCCGGAGGAGGAGAAGACGATGGGTTGCTGCTGCCGGTGCCT 147
consensus_14257#0      CGCGCGGCGGCGGCGGCGGCCGGAGGAGGAGAAGACGATGGGTTGCTGCTGCCGGTGCCT 180
consensus_14257#2      CGCGCGGCGGCGGCGGCTGTCGGAGGAGGAGGAGACGATGGGTTGCTGCTGCCGGTGCCT 98
                                                                                   

consensus_14257#3      GGAGATCCTCTGCGCCATCCTCCTCCCACCGCTCGGCGTNTGCCTCCGCCATGGCTGCTG 107
consensus_14257#4      ------------------------------------------------------------
consensus_14257#1      GGAGATCCTCTGCGCCATCCTCCTCCCACCGCTCGGCGTCTGCCTCCGCCATGGCTGCTG 207
consensus_14257#0      GGAGATCCTCTGCGCCATCCTCCTCCCACCGCTCGGCGTCTGCCTCCGCCATGGCTGCTG 240
consensus_14257#2      GGAGATTCTCTGCGCCATCCTACTCCCGCCGCTCGGCGTCTGTCTCCGCCATGGTTGCTG 158
                                                                                   

consensus_14257#3      CACCATGGAGTTNTGGATTAGCGTGCTGCTCACCATCCTCGGGTACCTCCCCGGCGTCCT 167
consensus_14257#4      ------------------------------------------------------------
consensus_14257#1      CACCATGGAGTTCTGGATTAGCGTGCTGCTCACCATCCTCGGGTACCTCCCCGGCGTCCT 267
consensus_14257#0      CACCATGGAGTTCTGGATTAGCGTGCTGCTCACCATCCTCGGGTACCTCCCCGGCGTCCT 300
consensus_14257#2      CACCATGGAGTTCTGGATTAGCGTGCTGCTCACCATCCTCTGCTACCTCCCCGGCGTCCT 218
                                                                                   

consensus_14257#3      NTACGCCGTCTACGTCATCGTCTCCGTCGACCCCGACCGCGAACGCCGCCGCCGCGTCGA 227
consensus_14257#4      ---------------------------------------------------ATGGATTGA 9
consensus_14257#1      CTACGCCGTCTACGTCATCGTCTCCGTCGACCCCGACCGCGAACGCCGCCGCCGCGTCGA 327
consensus_14257#0      CTACGCCGTCTACGTCATCGTCTCCGTCGACCCCGACCGCGAACGCCGCCGCCGCGTCGA 360
consensus_14257#2      CTACGCCGTCTACTGTATCGTTTTCGCTTACCCCTACCGCTAGCGCTGTCGACGTTTCTA 278
                                                                            *  *  *

consensus_14257#3      CCCC-GACGAATACATCTACGTCGCCT-GACCATCTGTGGAGTACTTAGTAGGTGATTAA 285
consensus_14257#4      AGGA-GTAGAA-ACATTTACGTCGCCA-GACCATCTGTGGAGTACTTAGTAGGTGATTAA 66
consensus_14257#1      CCCC-GACGAATACATCTACGTCGCCT-GACCATCTGTGGAGTACTTAGTAGGTGATTAA 385
consensus_14257#0      CCCC-GACGAATACATCTACGTCGCCT-GACCATCTGTGGAGTACTTAGTAGGTGATTAA 418
consensus_14257#2      CCTCTACTCTTTCCATTTACTTTGTCTTGACCATGTCCTCTCTGTGCATTTTTTTCGTTA 338
                                    *** *** * * *  ****** *      *    * *   *   * *

consensus_14257#3      TTTAGCTCCTGGAAAGCATAT-CCTTGTT-CCTAGTC--CTATTACCTATATCTGCTCC- 340
consensus_14257#4      TTTAGCTCCTGGAAAGCATAT-CCTTGTTTCCTAGTC--GTATTACCAAAATTTGCTCC- 122
consensus_14257#1      TTTAGCTCCTGGAAAGCATAT-CCTTGTT-CCTAGTC--CTATTACCTATATCTGCTCC- 440
consensus_14257#0      TTTAGCTCCTGGAAAGCATAT-CCTTGTTCCTAAGTC--CTATTACCTATATCTGNTCC- 474
consensus_14257#2      TTACTCTCTTGCATCGCATGTATTTTGCCTCATGATTTACCCTTTCTGATCTCCCCTCTA 398
                       **   *** ** *  **** *   ***   *    *      ** *  *  *    **  

consensus_14257#3      TGTTCCACCCTTCAATTTGTAAACTGGTACTAGCACATCTGCAGCCTTTGGA-CAAGTCG 399
consensus_14257#4      TGTTCCACCCTTCAATTTGTTAAGTGGTTTTAGCCCATTTACAACCTTTGAA-AAAATAA 181
consensus_14257#1      TGTTCCACCCTTCAATTTGTAAACTGGTACTAGCACATCTGCAGCCTTTGGA-CAAGTCG 499
consensus_14257#0      TGTTCAACC-TTCAATTTGTAAACTGGTACTACTACATCTTAAATTTGTAGTTCAACTGT 533
consensus_14257#2      TATTCTCTACCTCGTTCTACCTCCTTCTTATATTTCCATCTTCATCTGTGTCTCTCGTTA 458
                       * ***      **  * *      *  *  **   *          * *        *  

consensus_14257#3      AATCGGGTCGGAAT-TTGTTACCGTNGTT-CAACTGTGTTACTGTGACCGTTTGATTGCT 457
consensus_14257#4      AATAGGGTAGAAAT-TTGTTACCGTA---------------------------------- 206
consensus_14257#1      AATCGGGTCGGAAT-TTGTTACCGTAGTT-CAACTGTGTTACTGTGACCGTTTGATTGCT 557
consensus_14257#0      GTTACTGTGACCGTGTCATTGCTGGATCCACCGCTCCTCACTTCCGGTTGTCTTAGCTGT 593
consensus_14257#2      CTTCTTTCACCGTCTTTATCCATTTTCTCCTTTCTTCTTTTCTATGTCTCTTCTGTTTGC 518
                         *            *  *                                         

consensus_14257#3      GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------- 492
consensus_14257#4      --AAAAAAAAAAAAAAAAAAAAA------------------------------------- 227
consensus_14257#1      GGATCAATTGCTCTCAAGTCTCAACTTGTGTTGTTCTTCAGTTGCTGAATTTATTGACAG 617
consensus_14257#0      CTGGATTTATTTGCAGGCTCGAATGAAGATTTGTTATTTCTTTTATTGAGATTTGTTTGT 653
consensus_14257#2      TGCACTTAATTAGTCACGTCTTAAATCGTGTTTTCGCCATTCTATTTCTCATACAATCTT 578
                                             *                                     

consensus_14257#3      ------------------------------------------------------------
consensus_14257#4      ------------------------------------------------------------
consensus_14257#1      CCTGAAATGAGGAT---------------------------------------------- 631
consensus_14257#0      TCTTGTAAGCTCTCTACTTTTGTGATTTGCCAACGACGCTTTTCTTAATTCGATTTACAG 713
consensus_14257#2      CTCTCATCCTTCTT---------------------------------------------- 592
                                                                                   

consensus_14257#3      ------------------------------------------------------------
consensus_14257#4      ------------------------------------------------------------
consensus_14257#1      ------------------------------------------------------------
consensus_14257#0      ATAGTGCAGCTCGCAATCGTAGTGCTTATCTGTGTATAAATGATGACGAGTGGTTGCGTG 773
consensus_14257#2      ------------------------------------------------------------
                                                                                   

consensus_14257#3      ------------------------------------------------------------
consensus_14257#4      ------------------------------------------------------------
consensus_14257#1      ------------------------------------------------------------
consensus_14257#0      CGGCTCGTGAAAGGGCTGCGCTCTATAACTAATGGTACCATTATCCGATTTTTTGCGGGC 833
consensus_14257#2      ------------------------------------------------------------
                                                                                   

consensus_14257#3      ------------------------------------------------------------
consensus_14257#4      ------------------------------------------------------------
consensus_14257#1      ------------------------------------------------------------
consensus_14257#0      TTGAGTGTAGTTGCGTTATGTATATTGCGAACGCTGTTTTCATGCCCTATTCGTTCCTCT 893
consensus_14257#2      ------------------------------------------------------------
                                                                                   

consensus_14257#3      ------------------------------------------------------------
consensus_14257#4      ------------------------------------------------------------
consensus_14257#1      ------------------------------------------------------------
consensus_14257#0      CTAACTCCTTCCGTCTATATAGTGTATTGTGCGTTGATTGGTTCACTCATTTGTCTGAGA 953
consensus_14257#2      ------------------------------------------------------------
                                                                                   

consensus_14257#3      ------------------------------------------------------------
consensus_14257#4      ------------------------------------------------------------
consensus_14257#1      ------------------------------------------------------------
consensus_14257#0      TCTGTTCGCGCTGTTGCTGGTTTGTGCGATGCTTCATTGGTTAGTTTGTAGTTGTGTTTG 1013
consensus_14257#2      ------------------------------------------------------------
                                                                                   

consensus_14257#3      --
consensus_14257#4      --
consensus_14257#1      --
consensus_14257#0      AC 1015
consensus_14257#2      --
                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)