cluster # 14262

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Oryza sativa
cluster # 14262 cluster # 14262 Sequences # 15 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14262#0 length = 862 sequences # 3
consensus_14262#1 length = 858 sequences # 7

consensus_14262#2 length = 548 sequences # 4
consensus_14262#3 length = 303 sequences # 1

consensusID : consensus_14262#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 862
fasta sequence

                              [ATCACAAGATCACACACAACTCATCAGACTCAGATAGAAGAGTTCATTGAGTCATCGAGAGCGAGCAACCAGCTAGACAAACAAGCAAACCTAGCTACCTACTACTCGATCGAAGGCAAAATGGACGTGATGGAGAAGTCTCGGCGAGCTAACTTCTTGTTCGACGACGACGACCAAACGCCGCCCAGGCAGAACGGCCGCCGGAACGTCGACCAGCACAACAGCGACGACGGCGACGTCGACAGCGTCCGCGTGTCGTGCTACGGCGGCGTCGCAAAGCCAAAGGCCAAGTCGTCGTCGACTGCGAAGGACGTCGTCGTCACCGGCCGTCCTGCTGCAGGCTCCAACCGTACCTGATCTTATTCTTAGTATAGCTAACTAGCGATCGAGCTCGATCCAGAATTTGAAATTTCGGAAATTTTGCCCCCCACCGAAATACTCACATCTCGTCCGAAATTTTCGGTTTTTTATAACTTTTTATGAATTTTGGTCAAAATTTATTCTAATTTATTTAAAATCAGTCAAAATTTCAAAAAAAAATCGTATGAAAAAAATCCGAAATTTTGGAAATTTCAGTTCTTTCGCCCACCTGCGGCAGAAATCTTACTTCCGAAATTTCAAACCCTGGCTCGATCTCATCTCGCACCCTTGATCATGTCGAGCAACCTTGTGTTGATGATCGACATGGTCACTCTAGCTAGCTAGTTATTCGTATCAATGTTGAATAACATGCATATGCAAACATGACCGTCTCCAATTACTGGTACAGACGACTACTTACAGAGTGAGCTGTATGTTACGAGAATGTACTTTACGAAATACTACTATGAACATAGTACTAAAATTGAAAATCTCTCGATTC]

[+] EMBL AK121958             [ATCACAAGATCACACACAACTCATCAGACTCAGATAGAAGAGTTCATTGAGTCATCGAGAGCGAGCAACCAGCTAGACAAACAAGCAAACCTAGCTACCTACTACTCGATCGAAGGCAAAATGGACGTGATGGAGAAGTCTCGGCGAGCTAACTTCTTGTTCGACGACGACGACCAAACGCCGCCCAGGCAGAACGGCCGCCGGAACGTCGACCAGCACAACAGCGACGACGGCGACGTCGACAGCGTCCGCGTGTCGTGCTACGGCGGCGTCGCAAAGCCAAAGGCCAAGTCGTCGTCGACTGCGAAGGACGTCGTCGTCACCGGCCGTCCTGCTGCAGGCTCCAACCGTACCTGATCTTATTCTTAGTATAGCTAACTAGCGATCGAGCTCGATCCAGAATTTGAAATTTCGGAAATTTTGCCCCCCACCGAAATACTCACATCTCGTCCGAAATTTTCGGTTTTTTATAACTTTTTATGAATTTTGGTCAAAATTTATTCTAATTTATTTAAAATCAGTCAAAATTTCAAAAAAAAATCGTATGAAAAAAATCCGAAATTTTGGAAATTTCAGTTCTTTCGCCCACCTGCGGCAGAAATCTTACTTCCGAAATTTCAAACCCTGGCTCGATCTCATCTCGCACCCTTGATCATGTCGAGCAACCTTGTGTTGATGATCGACATGGTCACTCTAGCTAGCTAGTTATTCGTATCAATGTTGAATAACATGCATATGCAAACATGACCGTCTCCAATTACTGGTACAGACGACTACTTACAGAGTGAGCTGTATGTTACGAGAATGTACTTTACGAAATACTACTATGAACATAGTACTAAAATTGAAAATCTCTCGATTC]
[+] EMBL CA754277             [                                     AAGAGTTCATTGAGTCATCGAGAGCGAGCAACCAGCTAGACAAACAAGCAAACCTAGCTACCTACTACTCGATCGAAGGCAAAATGGACGTGATGGAGAAGTCTCGGCGAGCTAACTTCTTGTTCGACGACGACGACCAAACGCCGCCCAGGCAGAACGGCCGCCGGAACGTCGACCAGCACAACAGCGACGACGGCGACGTCGACAGCGTCCGCGTGTCGTGCTACGGCGGCGTCGCAAAGCCAAAGGCCAAGTCGTCGTCGACTGCGAAGGACGTCGTCGTCACCGGCCGTCCTGCTGCAGGCTCCAACCGTACCTGATCTTATTCTTAGTATAGCTAACTAGCGATCGAGCTCGATCCAGAATTTGAAATTTCGGAAATTTTGCCCCCCACCGAAATACTCACATCTCGTCCGAAATTTTTGGTTTTTTATAACTTTTTATGAATTTTGGTCAAAATTTATTCTAATTTATTTAAAATCAGTCAAAATTTCAAAAAAAAATCGTATGANAAAAATCCGAAATTTTGGAAATTTCAGTTCTTTCGCCCACCTGCGGCAGAAATCTTACTTCCGAAA TTCAAAC                                                                                                                                                                                                                                               ]
[+] EMBL AU057908             [                                                                                                                                                                                                                                                                                                                                                                                                                              GAAATTTTGCCCCCCACCGAAATACTCACATCTCGTCCGAAATTTTCGGTTTTTTATAACTTTTTATGAATTTTGGTCAAAATTTATTCTAATTTATTTAAAATCAGTCAAAATTTCAAAAAAAAATCGTATGAAAAAAATCCGAAATTTTGGAAATTTCAGTTCTTTCGCCCACCTGCGGCAGAAATCTTACTTCCGAAATTTCAAACCCTGGCTCGATCTCATCTCGCACCCTTGATCATGTCGAGCAACCTTGTGTTGATGATCGACATGGTCACTCTAGCTAGCTAGTTATTCGTATCAATGTTGAATAACATGCATATGCAAACATGACCGTCTCCAATTACTGGTACAGACGACTACTTACAGAGTGAGCTGTATGTTACGAGAATGTACTTTACGAAATACTACTATGAACATAG                          ]




>consensus_14262#0
ATCACAAGATCACACACAACTCATCAGACTCAGATAGAAGAGTTCATTGAGTCATCGAGA
GCGAGCAACCAGCTAGACAAACAAGCAAACCTAGCTACCTACTACTCGATCGAAGGCAAA
ATGGACGTGATGGAGAAGTCTCGGCGAGCTAACTTCTTGTTCGACGACGACGACCAAACG
CCGCCCAGGCAGAACGGCCGCCGGAACGTCGACCAGCACAACAGCGACGACGGCGACGTC
GACAGCGTCCGCGTGTCGTGCTACGGCGGCGTCGCAAAGCCAAAGGCCAAGTCGTCGTCG
ACTGCGAAGGACGTCGTCGTCACCGGCCGTCCTGCTGCAGGCTCCAACCGTACCTGATCT
TATTCTTAGTATAGCTAACTAGCGATCGAGCTCGATCCAGAATTTGAAATTTCGGAAATT
TTGCCCCCCACCGAAATACTCACATCTCGTCCGAAATTTTCGGTTTTTTATAACTTTTTA
TGAATTTTGGTCAAAATTTATTCTAATTTATTTAAAATCAGTCAAAATTTCAAAAAAAAA
TCGTATGAAAAAAATCCGAAATTTTGGAAATTTCAGTTCTTTCGCCCACCTGCGGCAGAA
ATCTTACTTCCGAAATTTCAAACCCTGGCTCGATCTCATCTCGCACCCTTGATCATGTCG
AGCAACCTTGTGTTGATGATCGACATGGTCACTCTAGCTAGCTAGTTATTCGTATCAATG
TTGAATAACATGCATATGCAAACATGACCGTCTCCAATTACTGGTACAGACGACTACTTA
CAGAGTGAGCTGTATGTTACGAGAATGTACTTTACGAAATACTACTATGAACATAGTACT
AAAATTGAAAATCTCTCGATTC

consensusID : consensus_14262#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 858
fasta sequence

                              [AATTCGCCCTTGGACACTGACATGGCTGAAGGAGTAGAAAATCATCACAACTC--ATC-A-AACTCAGATCGATT-G--TC-AT---T-GAGAGCGAGC-AACTAGCGCTAGCTACTACTCGAAGGCAAAATGGACGTGATGGAGAAGTCTCGGCGAGCTCACTTCTTGTTCGACGACGACGACCAAACGCCGCCGAAGCAGAACGGCCCCCAGA---ACGACGACCAGCACAACAACGACGACGGCAGCGGCTGCCTCTGCGTGTCGTGCTA---CGGCGGCGTCGCAAAGCCAAAGGCGCCCAAGTCGTCGTCG-C--CGGCGAAGGACGTCGTCGCCGGCGGCCGTCCTGCTGCAGGCTCCAACTGTACCTGATC---TTACTCTAACCATATATAGCTTGCTAGCGATCGAGCTCGATCTCATCTCGCACCTAGCTTGATCATGTCGAGCAACCATGTACGTGTTGATCGACATGATCACTCTAGCTAGCTAGCTAGCTACTTCATATGGATGTTGAAT-AAGGGATCATATCGGAGGAAGACATGCATGAGTGCTTATGCAACTATGCAAGCATGCCCGTCTCCAATTACTGGTACAGACTACAGAGTGATGTATG----TTACGAGAAATGTA--CTCTTTAC-AAATACTATGAACATATATTATGATCAATTACATGACAGTTGTATTATTAATTAGCAGCGTTCTGAATTCATTCTGAAAGGGTGTGTCCGGCCTTTCGAATGGACAACCAGCTGCTGTAATTAAGCTGTTCATTGTTCGATCTCTTGCCGAATAGTATAACTTTTTTTTTGGGGGGAATGGGCACTCATTTATTCTTTACAAATGAATATATCTCCGTAGGAGTATAAAAAAAAAAAAAAA]

[+] EMBL CF298937             [AATTCGCCCTTGGACACTGACATGGCTGAAGGAGTAGAAAATCATCACAACTC  ATC A AACTCAGATCGATT G  TC AT   T GAGAGCGAGC AACTAGCGCTAGCTACTACTCGAAGGCAAAATGGACGTGATGGAGAAGTCTCGGCGAGCTCACTTCTTGTTCGACGACGACGACCAAACGCCGCCGAAGCAGAACGGCCCCCAGA   ACGACGACCAGCACAACAACGACGACGGCAGCGGCTGCCTCTGCGTGTCGTGCTA   CGGCGGCGTCGCAAAGCCAAAGGCGCCCAAGTCGTCGTCG C  CGGCGAAGGACGTCGTCGCCGGCGGCCGTCCTGCTGCAGGCTCCAACTGTACCTGATC   TTACTCTAACCATATATAGCTTGCTAGCGATCGAGCTCGATCTCATCTCGCACCTAGCTTGATCATGTCGAGCAACCATGTACGTGTTGATCGACATGATCACTCTAGCTAGCTAGCTAGCTACTTCATATGGATGTTGAAT AAGGGATCAT                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CF336008             [                                   aatccATCATCACAACTC  ATC A AACTCAGATCGATT G  TC AT   T GAGAGCGAGC AACTAGCGCTAGCTACTACTCGAAGGCAAAATGGACGTGATGGAGAAGTCTCGGCGAGCTCACTTCTTGTTCGACGACGACGACCAAACGCCGCCGAAGCAGAACGGCCCCCAGA   ACGACGACCAGCACAACAACGACGACGGCAGCGGCTGCCTCTGCGTGTCGTGCTA   CGGCGGCGTCGCAAAACCAAAGGCGCCCAAGTCGTCGTCG C  CGGCGAAGGACGTCGTCGCCGGCGGCCGTCCTGCTGCAGGCTCCAACTGTACCTGATC   TTACTCTAACCATATATAGCTTGCTAGCGATCGAGCTCGATCTCATCTCGCACCTAGCTTGATCATGTCGAGCAACCATGTACGTGTTGATCGACATGATCACTCTAGCTAGCTAGCTAGCTACTTCATATGGATGTTGAAT AAGGGATCATATCGGAGGAAGACATGCATGAGTGCTTATGCAACTATGCAAGCATGCCCGTCTCCAATTACTGGTACAGACTACAGAGTGATGTATG    TTACGAGAAATGTA  CTCTTTAC AAAT                                                                                                                                                                                                                                             ]
[+] EMBL CB000434             [                                         TCATCA AACTCAGATCGATAGAAGAGATCGATTCGTTTCTAT   C GAAAGCGAGCAAACTAGCGTTAGCTACTACTCGAAGGCAAAATGGACGTGATGGAGAAGTCTCGGCGAGCTCACTTCTTGTTCGACGACGACGACCAAACGCCGCCCAAGCAGAACGGCCCCCGGAACGACGACGACCAGCACAACAACGACGACGGCAGCGGCTGCCTCTGCGTGTCGTGCTACGGCGGCGGCGTCGCAAAGCCAAAGG   CCAAGTCGTCGTCGTCGACGGCGAAGGACGTCGTCGCCGGCGGCCGTCCTGCTGCAGGCTCCAACTGTACCTGATCTAATTACTCTAACCATATATAGCTTGCTAGCGATCGAGCTCGATCTCATCTCGCACCTAGCTTGATCATGTCGAGCAACCATGTACGTGTTGATCGACATGATCACTCTAGCTAGCTAGCTAGCTACTTCATATGGATGTTGAAT AAGGGATCATATTGGAGGAAAACATGCATGAATGCTTATGCAACTATGCAAGCATGCCCGTCTCCAATTACTGGTACAGACTACAGAGTGATGTATGTTAATTACGAGAAATGTACTCTCTTTACGAAATACTATGAACATATATTATGATCAATTACATGACAGTTGTATTATTAATTAGCAGCGTTCTGAATTCATTCTGAAAGGGTGTGTCCGGCCTTTCGAATGGACAACCAGCTGCTGTAATTAAGCTGTTCATTGTTCGATCTCTTGCCGAATAGTATAACTTTTTTTTTGGGGGGAATGGGCACTCATTTATTCTTTACAAATGAATATATCTCCGTAGGAGTATAAAAAAAAAAAAAAA]
[+] EMBL CB000518             [                                          CATCA AACTCAGATCGATAGAAGAGATCGATT G  TC ATCTATCGAAAGCGAGCAAACTAGCGTTAGCTACTACTCGAAGGCAAAATGGACGTGATGGAGAAGTCTCGGCGAGCTCACTTCTTGTTCGACGACGACGACCAAACGCCGCCCAAGCAGAACGGCCCCCGGAACGACGACGACCAGCACAACAACGACGACGGCAGCGGCTGCCTCTGCGTGTCGTGCTACGGCGGCGGCGTCGCAAAGCCAAAGG   CCAAGTCGTCGTCGTCGACGGCGAAGGACGTCGTCGCCGGCGGCCGTCCTGCTGCAGGCTCCAACTGTACCTGATCTAATTACTCTAACCATATATAGCTTGCTAGCGATCGAGCTCGATCTCATCTCGCACCTAGCTTGATCATGTCGAGCAACCATGTACGTGTTGATCGACATGATCACTCTAGCTAGCTAGCTAGCTACTTCATATGGATGTTGAAT AAGGGATCATATTGGAGGAAAACATGCATGAATGCTTATGCAACTATGCAAGCATGCCCGTCTCCAATTACTGGTACAGACTACAGAGTGATGTATGTTAATTACGAGAAATGTACTCTCTTTACGAAATACTATGAACATATATTATGATCCATTACATGACAGTTGTATTATTAATTAGCAGCGTTCTG                                                                                                                                                                                ]
[+] EMBL CF332665             [                                                   TC  ATC A AACTCAGATCGATT G  TC AT   T GAGAGCGAGC AACTAGCGCTAGCTACTACTCGAAGGCAAAATGGACGTGATGGAGAAGTCTCGGCGAGCTCACTTCTTGTTCGACGACGACGACCAAACGCCGCCGAAGCAGAACGGCCCCCAGA   ACGACGACCAGCACAACAACGACGACGGCAGCGGCTGCCTCTGCGTGTCGTGCTA   CGGCGGCGTCGCAAAACCAAAGGCGCCCAAGTCGTCGTCG C  CGGCGAAGGACGTCGTCGCCGGCGGCCGTCCTGCTGCAGGCTCCAACTGTACCTGATC   TTACTCTAACCATATATAGCTTGCTAGCGATCGAGCTCGATCTCATCTCGCACCTAGCTTGATCATGTCGAGCAACCATGTACGTGTTGATCGACATGATCACTCTAGCTAGCTAGCTAGCTACTTCATATGGATGTTGAAT AAGGGATCATATCGGAGGAAGACATGCATGAGTGCTTATGCAACTATGCAAGCATGCCCGTCTCCAATTACTGGTACAGACTACAGAGTGATGTATG    TTACGAGAAATGTA  CTCTTTAC AAATACCATGAACATATATTATGATCAATTACATGACAGTTGTATTATTAATTAGCAGCGTTCTG                                                                                                                                                                                ]
[+] EMBL AK063251             [                                                                                                  C AACTAGCGCTAGCTACTACTCGAAGGCAAAATGGACGTGATGGAGAAGTCTCGGCGAGCTCACTTCTTGTTCGACGACGACGACCAAACGCCGCCGAAGCAGAACGGCCCCCAGA   ACGACGACCAGCACAACAACGACGACGGCAGCGGCTGCCTCTGCGTGTCGTGCTA   CGGCGGCGTCGCAAAACCAAAGGCGCCCAAGTCGTCGTCG C  CGGCGAAGGACGTCGTCGCCGGCGGCCGTCCTGCTGCAGGCTCCAACTGTACCTGATC   TTACTCTAACCATATATAGCTTGCTAGCGATCGAGCTCGATCTCATCTCGCACCTAGCTTGATCATGTCGAGCAACCATGTACGTGTTGATCGACATGATCACTCTAGCTAGCTAGCTAGCTACTTCATATGGATGTTGAAT AAGGGATCATATCGGAGGAAGACATGCATGAGTGCTTATGCAACTATGCAAGCATGCCCGTCTCCAATTACTGGTACAGACTACAGAGTGATGTATG    TTACGAGAAATGTA  CTCTTTAC AAATACCATGAACATATATTATGATCA                                                                                                                                                                                                                      ]
[-] EMBL CF298938             [                                                                                                                                                                                                             GGCCCCCAGA   ACGACGACCAGCACAACAACGACGACGGCAGCGGCTGCCTCTGCGTGTCGTGCTA   CGGCGGCGTCGCAAAGCCAAAGGCGCCCAAGTCGTCGTCG C  CGGCGAAGGACGTCGTCGCCGGCGGCCGTCCTGCTGCAGGCTCCAACTGTACCTGATC   TTACTCTAACCATATATAGCTTGCTAGCGATCGAGCTCGATCTCATCTCGCACCTAGCTTGATCATGTCGAGCAACCATGTACGTGTTGATCGACATGATCACTCTAGCTAGCTAGCTAGCTACTTCATATGGATAT  AATAAAGGGATCATATCGGAGGAAGACATGCATGAGTGCTTATGCAACTATGCAAGCATGCCCGTCTCCAATTACTGGTACAGACTACAGAGTGATGTATG    TTACGAGAAATGTA  CT                                                                                                                                                                                                                                                        ]




>consensus_14262#1
AATTCGCCCTTGGACACTGACATGGCTGAAGGAGTAGAAAATCATCACAACTCATCAAAC
TCAGATCGATTGTCATTGAGAGCGAGCAACTAGCGCTAGCTACTACTCGAAGGCAAAATG
GACGTGATGGAGAAGTCTCGGCGAGCTCACTTCTTGTTCGACGACGACGACCAAACGCCG
CCGAAGCAGAACGGCCCCCAGAACGACGACCAGCACAACAACGACGACGGCAGCGGCTGC
CTCTGCGTGTCGTGCTACGGCGGCGTCGCAAAGCCAAAGGCGCCCAAGTCGTCGTCGCCG
GCGAAGGACGTCGTCGCCGGCGGCCGTCCTGCTGCAGGCTCCAACTGTACCTGATCTTAC
TCTAACCATATATAGCTTGCTAGCGATCGAGCTCGATCTCATCTCGCACCTAGCTTGATC
ATGTCGAGCAACCATGTACGTGTTGATCGACATGATCACTCTAGCTAGCTAGCTAGCTAC
TTCATATGGATGTTGAATAAGGGATCATATCGGAGGAAGACATGCATGAGTGCTTATGCA
ACTATGCAAGCATGCCCGTCTCCAATTACTGGTACAGACTACAGAGTGATGTATGTTACG
AGAAATGTACTCTTTACAAATACTATGAACATATATTATGATCAATTACATGACAGTTGT
ATTATTAATTAGCAGCGTTCTGAATTCATTCTGAAAGGGTGTGTCCGGCCTTTCGAATGG
ACAACCAGCTGCTGTAATTAAGCTGTTCATTGTTCGATCTCTTGCCGAATAGTATAACTT
TTTTTTTGGGGGGAATGGGCACTCATTTATTCTTTACAAATGAATATATCTCCGTAGGAG
TATAAAAAAAAAAAAAAA

consensusID : consensus_14262#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 548
fasta sequence

                              [GTCACAGGGTTCACCACACAACTCATCAGACTCAAGATAGAAGAGTTCA-TTGAGTCATCGAGAGCGA-CAACCAGCTAGAC-AAACAAGCAAACCTAGCTACCTACTACTCGATCCAAGCCAAAATGG-ACGTGATGGAGAAGTCTCGGCGAGCTCACTTCTTGTTCGACGACGACGACCAAACGCCCAAGCACAAGCAGAATGGCCCCATGAACGACGGCAGCGGCGGCCTCTGCGTGCGGTGGTGCTACGGCGTCGGAAAGTCGTCGTCGA-CGGCGAAGGACGACGACTA-CGCCGCCGGCCGT-CCTGCTGCAGGCTCCAACCGCCCA-ACCGGATCGA-TGG--CCAACTC--T--AACTAGCTACAGATCGATCGATCTCACACGCACCTTGATCAT-GTCGAGCATGTGCATCGATTGATC-GACATGCTAACTCTGGTTGTTAGTTATTGTTTCTAGTTGTTGAAAAGAACTCAGGTTGAGTTTAATGCTAGCTATACTTACTCTGTCGTCCCAAAA-CCATCAAAA-TTGTTGCATT-CAAATTTTGTTAAAAAAAAA]

[+] EMBL BI804142             [GTCACAGGGTTCACCACACAACTCATCAGACTCAAGATAGAAGAGTTCATTTGAGTCATCGAGAGCGA CAACCAGCTAGAC AAACAAGCAAACCTAGCTA CTA TACTCGATCCAAGCCAAAATGG ACGTGATGGAGAAGTCTCGGCGAGCTCACTTCTTGTTCGACGACGACGACCAAACGCCCAAGCACAA CAGAATGGCCCCATGAACGACGGCAGCGGCGGCCTCTGCGTGCGGTGGTGCTACGGCGTCGGAAAGTCGTCGTCGA CGGCGAAGGACGACGACTA CGCC CC GCCGT CCTGCTGCAGGCTCCAACCGCCCA ACCGGATCGA T G  CC ACTC  T  AACTAGCTACAGATCGATCGATCTCACACGCACCTTGATCAT GTCGAGCATGTGCATCGATTGATC GACATGCTAACTCTGGTTGTTAGTTATTGTTTCTAGTTGTTGAAAAGAACTCA GTTGAGTTTAATGCTAGCTATACTTACTCGGTCGTCCC  AA CCAT AAAA TGGTGCCATC CAAATTTGGTTAAGAAAAA ]
[+] EMBL BI803186             [        GTTCA CACCCAACTCATCAGACTC AGATAGAAGAGTTCA TTGAGTCATCGAGAGCGACCAACCAGCTAGAC AAACAAGCAAACCTAGCTACCTACTACTCGATCCAAGGCAAAATGG ACGTGATGGAGAAGTCTCGGCGAGCTCACTTCTTGTTCGACGACGACGACCAAACGCCCAAGCACAAGCAGAATGGCCCCATGAACGACGGCAGCGGCGGCCTCTGCGTGCGGTGGTGCTACGGCGTCGGAAAGTCGTCGTCGA CGGCGAAGGACGACGACTA CGCCGCCGGCCGT CCTGCTGCAGGCTCCAACCGCCCA ACCGGATCGA TGG  CCAACTC  T  AACTAGCTACAGATCGATCGATCTCACACGCACCTTGATCAT GTCGAGCATGTGCATCGATTGATC GACATGCTAACTCTGGTTGTTAGTTATTGTTTCTAGTTGTTGAAAAGAACTCAGGTTGAGTTTAATGCTAGCTATACTTACTCTGTCGTCGCAAAA CAATC AAA TTGTTGCATT CAAATTTTGTTAAAAAAAA ]
[+] EMBL BI803212             [                                           gaTTCA TTGAGTCATCGAGAGCGA CAACCAGTTAGACTACACAACCAAACCTAGCTACCTACTACTCGATCCAAGCCAAAATGGAACGTGATGGAGAAGTCTCGGCGAGCTCACTTCTTGTTCGACGACGACGACC AACGCCCAAGCACAAGCAGAATGGCCCCATGAACGACGGCAGCGGCGGCCTCTGCGTGCGGTGGTGCTACGGCGTCGGAAAGTCGTCGTCGA CGGCGAAGGACGACGACTA CGCCGCCGGCCGT CCTGCTGCAGGCTCCAACCGCCCA ACCGGATCGA TGG  CCAACTC  T  AACTAGCTACAGATCGATCGATCTCACACGCACCTTGATCAT GTCGAGCATGTGCATCGATTGATC GACATGCTAACTCTGGTTGTTAGTTATTGTTTCTAGTTGTTGAAAAGAACTCAGGTTGAGTTTAATGCTAGCTATACTTACTCTGTCGTCGCAAAA  CATCAAAA TTGTTGCATT C AATTTTGTTAAAAAAAA ]
[+] EMBL BI803910             [                                                                                                                                                                                                                                                                   aAAAGTCGTCGTCGACCGGCGAAGGACGACGACTACCGCCGCCGGCCGTCCCTGCTGCAGGCTCCAACCGCCCACACCGGATCGATTGGCCCCAACTCCTTAAAACTAGCTACAGATCGATCGATCTCACACGCACCTTGATCATGGTCGAGCATGTGCATCGATTGATCGGACATGCTAACTCTGGTTGTTAGTTATTGTTTCTAGTTGTTGAAAAGAACTCAGGTTGAGTTTAATGCTAGCTATACTTACTCTGTCGTCCCAAAACCCATCAAAATTTGTTGCATTCCAATTTTTGTTAAAAAAAAA]




>consensus_14262#2
GTCACAGGGTTCACCACACAACTCATCAGACTCAAGATAGAAGAGTTCATTGAGTCATCG
AGAGCGACAACCAGCTAGACAAACAAGCAAACCTAGCTACCTACTACTCGATCCAAGCCA
AAATGGACGTGATGGAGAAGTCTCGGCGAGCTCACTTCTTGTTCGACGACGACGACCAAA
CGCCCAAGCACAAGCAGAATGGCCCCATGAACGACGGCAGCGGCGGCCTCTGCGTGCGGT
GGTGCTACGGCGTCGGAAAGTCGTCGTCGACGGCGAAGGACGACGACTACGCCGCCGGCC
GTCCTGCTGCAGGCTCCAACCGCCCAACCGGATCGATGGCCAACTCTAACTAGCTACAGA
TCGATCGATCTCACACGCACCTTGATCATGTCGAGCATGTGCATCGATTGATCGACATGC
TAACTCTGGTTGTTAGTTATTGTTTCTAGTTGTTGAAAAGAACTCAGGTTGAGTTTAATG
CTAGCTATACTTACTCTGTCGTCCCAAAACCATCAAAATTGTTGCATTCAAATTTTGTTA
AAAAAAAA

consensusID : consensus_14262#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 303
fasta sequence

                              [GATCACAACTCATCAAACTCAGATCGATAGAAGAGATCGATTGTCATCTATCGAAAGCGAGCAAACTAGCGTTAGCTACTACTCGAAGGCAAAATGGACGTGATGGAGAAGTCTCGGCGAGCTCACTTCTTGTTCGACGACGACGACCAAACGCCGCCCAAGCAGAACGGCCCCCGGAACGACGACGACCAGCACAACAACGACGACGGCAGCGGCTGCCTCTGCGTGTCGTGCTACGGCGGCGGCGTCGCATTGTCAAAGGCCAAGTCGTCGTCGTCCACGGCGAAAGACGTCGTCGCCGGC]

[+] EMBL CB000984             [GATCACAACTCATCAAACTCAGATCGATAGAAGAGATCGATTGTCATCTATCGAAAGCGAGCAAACTAGCGTTAGCTACTACTCGAAGGCAAAATGGACGTGATGGAGAAGTCTCGGCGAGCTCACTTCTTGTTCGACGACGACGACCAAACGCCGCCCAAGCAGAACGGCCCCCGGAACGACGACGACCAGCACAACAACGACGACGGCAGCGGCTGCCTCTGCGTGTCGTGCTACGGCGGCGGCGTCGCATTGTCAAAGGCCAAGTCGTCGTCGTCCACGGCGAAAGACGTCGTCGCCGGC]




>consensus_14262#3
GATCACAACTCATCAAACTCAGATCGATAGAAGAGATCGATTGTCATCTATCGAAAGCGA
GCAAACTAGCGTTAGCTACTACTCGAAGGCAAAATGGACGTGATGGAGAAGTCTCGGCGA
GCTCACTTCTTGTTCGACGACGACGACCAAACGCCGCCCAAGCAGAACGGCCCCCGGAAC
GACGACGACCAGCACAACAACGACGACGGCAGCGGCTGCCTCTGCGTGTCGTGCTACGGC
GGCGGCGTCGCATTGTCAAAGGCCAAGTCGTCGTCGTCCACGGCGAAAGACGTCGTCGCC
GGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14262#0      ATCACAAGATCA--CACACA-ACTCATCAGACTCA---GATAGAAGAGTTCATTGAGTCA 54
consensus_14262#3      -----------G--ATCACA-ACTCATCAAACTCA---GATCGATAGA-------AGAGA 36
consensus_14262#2      GTCACAGGGTTCACCACACA-ACTCATCAGACTCAA--GATAGAAGAGTTCATTGAGTCA 57
consensus_14262#1      ------AATTCGCCCTTGGACACTGACATGGCTGAAGGAGTAGAAAATCATCACAACTCA 54
                                          * *** *     ** *     * **           *   *

consensus_14262#0      TCGAGAGC-GAGCAACCAGCTAGACAAACAAGCAAACCTAGCTACCTACTACTCGATCGA 113
consensus_14262#3      TCGATTGT-CATCTATCGA--AAGCGAGCAAACTAGC---GTTAGCTACTACTCGA---- 86
consensus_14262#2      TCGAGAGC-GA-CAACCAGCTAGACAAACAAGCAAACCTAGCTACCTACTACTCGATCCA 115
consensus_14262#1      TCAAACTCAGATCGATTGTCATTGAGAGCGAGCAACTAGCGCTAGCTACTACTCGA---- 110
                       ** *      * * *           * * * * *     * ** ***********    

consensus_14262#0      AGGCAAAATGGACGTGATGGAGAAGTCTCGGCGAGCTAACTTCTTGTTCGACGACGACGA 173
consensus_14262#3      AGGCAAAATGGACGTGATGGAGAAGTCTCGGCGAGCTCACTTCTTGTTCGACGACGACGA 146
consensus_14262#2      AGCCAAAATGGACGTGATGGAGAAGTCTCGGCGAGCTCACTTCTTGTTCGACGACGACGA 175
consensus_14262#1      AGGCAAAATGGACGTGATGGAGAAGTCTCGGCGAGCTCACTTCTTGTTCGACGACGACGA 170
                       ** ********************************** **********************

consensus_14262#0      CCAAACGCCGCCCAGGCAGAACGGCCGCCGGAACGTCGACCAGCACAACAGCGACGACGG 233
consensus_14262#3      CCAAACGCCGCCCAAGCAGAACGGCCCCCGGAACGACGACGACCAGCACAACAACGACGA 206
consensus_14262#2      CCAAACGCC---CAAGCACAAG------CAGAATGGC------CCCATGAACGACGGCAG 220
consensus_14262#1      CCAAACGCCGCCGAAGCAGAACGGCCCCCAGAACGACGACCAGCACAACAACGACGACGG 230
                       *********    * *** **       * *** * *      *     * * *** *  

consensus_14262#0      CGACGTCGACAGCGTCCGCGTGTCGTGCTACGGCGGCG---TCGCAAAGCCAAAGGC--- 287
consensus_14262#3      CGGCAGCGGCTGCCTCTGCGTGTCGTGCTACGGCGGCGGCGTCGCATTGTCAAAGGC--- 263
consensus_14262#2      CGGCG------GCCTCTGCGTGCGGTGGTGCTACGGCG---TCGGAAAGTC--------- 262
consensus_14262#1      CAGCG---GCTGCCTCTGCGTGTCGTGCTACGGCGGCG---TCGCAAAGCCAAAGGCGCC 284
                       *  *       ** ** *****  *** * *  *****   *** *  * *         

consensus_14262#0      CAAGTCGTCGTCGACTGCGAAGGACGTCGTCGTCACCGGCCGTCCTGCTGCAGGCTCCAA 347
consensus_14262#3      CAAGTCGTCGTCGTCCACGGCGAAAGACGTCGTCGCCGGC-------------------- 303
consensus_14262#2      ---GTCGTCGACGGCGAAGGACGACGACTACGCCGCCGGCCGTCCTGCTGCAGGCTCCAA 319
consensus_14262#1      CAAGTCGTCGTCGCCGGCGAAGGACGTCGTCGCCGGCGGCCGTCCTGCTGCAGGCTCCAA 344
                          ******* ** *   *    * * *  ** *  ****                    

consensus_14262#0      CCGT---ACCTGATCTTATTCTTAG----TATAGCTAACTAGCGATCGAGCTCGATCCAG 400
consensus_14262#3      ------------------------------------------------------------
consensus_14262#2      CCGCCCAACCGGATCGATGGCCAAC----TCTAACTAGCTACAGATCGA--TCGATCTCA 373
consensus_14262#1      CTGT---ACCTGATCTTACTCTAACCATATATAGCTTGCTAGCGATCGAGCTCGATCTCA 401
                                                                                   

consensus_14262#0      AATTTGAAATTTCGGAAATTTTGCCCCCCACCGAAATACTC--ACATCTCGTCCGAAATT 458
consensus_14262#3      ------------------------------------------------------------
consensus_14262#2      CAC--GCACCTT----GATCATGTCGAGCATGTGCATCGAT--TGATCG-ACATGCTAAC 424
consensus_14262#1      TCTC-GCACCTAGCTTGATCATGTCGAGCAACCATGTACGTGTTGATCG-ACATGATCAC 459
                                                                                   

consensus_14262#0      TTCGGTT-----TTTTATAACTTTTTATGAATTTTGGTCAAAATTTATTCTAATTTATTT 513
consensus_14262#3      ------------------------------------------------------------
consensus_14262#2      TCTGGTT-----GTTAGTTATTGTTTCTAGTTGTTGAAAAGAACTCAGGTTGA---GTTT 476
consensus_14262#1      TCTAGCTAGCTAGCTAGCTACTTCATATGGATGTTGAATAAGGGATCATATCGGAGGAAG 519
                                                                                   

consensus_14262#0      AAAATCAGTCAAAATTTCAAAAAAAAATCGTATGAAAAAAATCCGA--AATTTTGGAAAT 571
consensus_14262#3      ------------------------------------------------------------
consensus_14262#2      AATGCTAGCTATACTTACT-----CTGTCGTCCCAAAACCATCAAA--ATTGTTGCA--T 527
consensus_14262#1      ACATGCATGAGTGCTTATGCAACTATGCAAGCATGCCCGTCTCCAATTACTGGTACAGAC 579
                                                                                   

consensus_14262#0      TTCAGTTCTTTCGCCCACCTGCGGCAGAAATCTTACTTCCGAAATTTCAAACCCTGGCTC 631
consensus_14262#3      ------------------------------------------------------------
consensus_14262#2      TCAAATTTTGTTAAAAAAAAA--------------------------------------- 548
consensus_14262#1      TACAGAG-TGATGTATGTTACGAGAAATGTACTCTTTACAAATACTATGAACATATATTA 638
                                                                                   

consensus_14262#0      GATCTCATCTCGCACCCTTGATCATGTCGAGCAACCTTGTGTTGATGATCGACATGGTCA 691
consensus_14262#3      ------------------------------------------------------------
consensus_14262#2      ------------------------------------------------------------
consensus_14262#1      TGATCAATTACATGACAGTTGTATTATTAATTAGCAGCGTTCTGAATTCATTCTGAAAGG 698
                                                                                   

consensus_14262#0      CTCTAGCTAGCTAGTTATTCGTATCAATGTTGAATAACATGCATATGCAAACATGACCGT 751
consensus_14262#3      ------------------------------------------------------------
consensus_14262#2      ------------------------------------------------------------
consensus_14262#1      GTGTGTCCGGCCTTTCGAATGGACAACCAGCTGCTGTAATTAAGCTGTTCATTGTTCGAT 758
                                                                                   

consensus_14262#0      CTCCAATTACTGGTACAGACGACTACTTACAGAGTGAGCTGTATGTTACGAGAATGTACT 811
consensus_14262#3      ------------------------------------------------------------
consensus_14262#2      ------------------------------------------------------------
consensus_14262#1      CTCTTGCCGAATAGTATAACTTTTTTTTTGGGGGGAATGGGCACTCATTTATTCTTTACA 818
                                                                                   

consensus_14262#0      TTACGAAATACTACTATGAACATAGTACTAAAATTGAAAATCTCTCGATTC 862
consensus_14262#3      ---------------------------------------------------
consensus_14262#2      ---------------------------------------------------
consensus_14262#1      AATGAATATATCTCCGTAGGAGTATAAAAAAAAAAAAAAA----------- 858