These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14266#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1889 fasta sequence [AATTTTCCCAGGAATCTGAGCGGCCGCAAGGCGTCACGCGAAACCCGTCCAACCCAACTCCACTCCATCCTCTGCAGCCGCAGTTGTGACGGAGACTCCAAGGCCATCACCATCCACCCGCTCTCCTCCTCCTCCTCCTCCGCTTGATCCCTCCATCTCCTCGATCGATCTCCACACTCCACTGCGCACTGCACCAGCAACGCCCCCCCCTGATCCCTCTCCACGGCTGCACCGGAGATGGCTTCCGCCCCCTTCGCCGTCTCCTCCTCACCGGCGGCTTCCGCCGTGGCCGCGCGCTCCAAGGTGTTGCGAGGAGGGAGGAGCGAGGCGAGGACTGGATGCCGCCTGGGGATCACGAGGAAGAATTTTGGACGTGTCATGATGGCCCTTGCAGTAGATGTCTCTCGTTTTGAAGGAGTGCCGATGGCCCCTCCAGACCCAATTCTCGGGGTTTCAGAAGCATTTAAGGCAGATCAAAATGATCTGAAGCTCAACCTTGGTGTTGGTGCCTATAGAACAGAAGAGTTACAGCCTTATGTCCTCAATGTGGTCAAGAAGGCTGAAACTCTTATGTTGGAGAAAGGAGAAAACAAGGAGTATCTGCCAATTGAAGGCTTAGCTGCATTTAACAAAGCAACTGCAGAACTATTGTTTGGAGCTGATAATCCAGTACTCAAGCAAGGACGTGTTGCTACTCTTCAGTCTCTCTCAGGAACCGGGTCGCTGCGCCTTGCTGCAGCATTTATACAAAGATATTTCCCTGAAGCAAAAGTACTGATATCATCTCCCACTTGGGGCAATCACAAGAACA-TTTTCAATGATGCAAAGGTACCTTGGTCAGAGTACCGTTATTACGACCCCAAGACTGTTGGCTTGGATTTTGAGGGAATGATAGCTGACATACAGGCTGCCCCAGATGGATCTTTTGTTCTGCTGCATGGTTGCGCTCACAACCCAACTGGAATAGACCCAACTCCGGAACAATGGGAGAAAATTGCAGATGTCATTCAAGAGAAGAAACACATGCCTTTCTTTGATGTTGCATATCAGGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATCTTCTGTCAGGCTTTTTGTTCAACGGGGACTGGAAGTGTTTGTTGCGCAGTCTTATAGCAAAAACCTTGGTTTATATGCAGAAAGAATTGGAGCAATAAATGTTGTCTGCTCAACACCTGAAGTCGCAAACAGGGTGAAGAGCCAGCTGAAACGATTGGCACGGCCCATGTATTCGAATCCCCCTATTCAT-GGTGCTAGGATAGTTGCCAACGTTGTTGGGGATCCAA-CCATGTTTGGTGAATGGAAACAGGAGATGGAAGAAATGGCAGGGCGTATCAAGAATGTAAGACAGAAGCTTTATGATAGTTTGTCTGCAAAGGACGACAGTGGCAAGGACTGGTCTTTCATTCTGAGGCAGATAGGCATGTTCTCCTACACGGGCTTGAACAAAACTCAGAGTGATAATATGACCGACAAATGGCACATATACATGACAAAGGATGGGAGAATTTCGTTGGCTGGATTGTCCCTGGCTAAATGCGAGTACCTAGCTGACGCCATCATCGACTCCTTCCATAACGTTAGCTAGACGAGGATTCAGGTCACTGCTATTGTGGTTAATCCTTCAATATGCTGGGATTTTTGGTTCCTTCCAGCTTGAGTTCTTAGCCAGGATTGTATATCCGGCGCTACGTAATTTGGAGATAATAATGAATTTTGTCTGTGCAACAAACTTTGCATATGCTTTGTCGAATGTACACTGGCACTATGTTAGAAGCTTGAAATATCGAATTGAATAATAATGAGACTAGCAATAAGCCAAACTAATTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK072426 [AATTTTCCCAGGAATCTGAGCGGCCGCAAGGCGTCACGCGAAACCCGTCCAACCCAACTCCACTCCATCCTCTGCAGCCGCAGTTGTGACGGAGACTCCAAGGCCATCACCATCCACCCGCTCTCCTCCTCCTCCTCCTCCGCTTGATCCCTCCATCTCCTCGATCGATCTCCACACTCCACTGCGCACTGCACCAGCAACGCCCCCCCCTGATCCCTCTCCACGGCTGCACCGGAGATGGCTTCCGCCCCCTTCGCCGTCTCCTCCTCACCGGCGGCTTCCGCCGTGGCCGCGCGCTCCAAGGTGTTGCGAGGAGGGAGGAGCGAGGCGAGGACTGGATGCCGCCTGGGGATCACGAGGAAGAATTTTGGACGTGTCATGATGGCCCTTGCAGTAGATGTCTCTCGTTTTGAAGGAGTGCCGATGGCCCCTCCAGACCCAATTCTCGGGGTTTCAGAAGCATTTAAGGCAGATCAAAATGATCTGAAGCTCAACCTTGGTGTTGGTGCCTATAGAACAGAAGAGTTACAGCCTTATGTCCTCAATGTGGTCAAGAAGGCTGAAACTCTTATGTTGGAGAAAGGAGAAAACAAGGAGTATCTGCCAATTGAAGGCTTAGCTGCATTTAACAAAGCAACTGCAGAACTATTGTTTGGAGCTGATAATCCAGTACTCAAGCAAGGACGTGTTGCTACTCTTCAGTCTCTCTCAGGAACCGGGTCGCTGCGCCTTGCTGCAGCATTTATACAAAGATATTTCCCTGAAGCAAAAGTACTG ATCATCTCCCACTTGGGGCAATCACAAGAACA TTTTCAATGATGCAAAGGTACCTTGGTCAGAGTACCGTTATTACGACCCCAAGACTGTTGGCTTGGATTTTGAGGGAATGATAGCTGACATACAGGCTGCCCCAGATGGATCTTTTGTTCTGCTGCATGGTTGCGCTCACAACCCAACTGGAATAGACCCAACTCCGGAACAATGGGAGAAAATTGCAGATGTCATTCAAGAGAAGAAACACATGCCTTTCTTTGATGTTGCATATCAGGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATCTTCTGTCAGGCTTTTTGTTCAACGGGGACTGGAAGTGTTTGTTGCGCAGTCTTATAGCAAAAACCTTGGTTTATATGCAGAAAGAATTGGAGCAATAAATGTTGTCTGCTCAACACCTGAAGTCGCAAACAGGGTGAAGAGCCAGCTGAAACGATTGGCACGGCCCATGTATTCGAATCCCCCTATTCAT GGTGCTAGGATAGTTGCCAACGTTGTTGGGGATCCAA CCATGTTTGGTGAATGGAAACAGGAGATGGAAGAAATGGCAGGGCGTATCAAGAATGTAAGACAGAAGCTTTATGATAGTTTGTCTGCAAAGGACGACAGTGGCAAGGACTGGTCTTTCATTCTGAGGCAGATAGGCATGTTCTCCTACACGGGCTTGAACAAAACTCAGAGTGATAATATGACCGACAAATGGCACATATACATGACAAAGGATGGGAGAATTTCGTTGGCTGGATTGTCCCTGGCTAAATGCGAGTACCTAGCTGACGCCATCATCGACTCCTTCCATAACGTTAGCTAGACGAGGATTCAGGTCACTGCTATTGTGGTTAATCCTTCAATATGCTGGGATTTTTGGTTCCTTCCAGCTTGAGTTCTTAGCCAGGATTGTATATCCGGCGCTACGTAATTTGGAGATAATAATGAATTTTGTCTGTGCAACAAACTTTGCATATGCTTTGTCGAATGTACACTGGCACTATGTTAGAAGCTTGAAATATCGAATTGAATAATAATGAGACTAGCAATAAGCCA ] [+] EMBL CF329392 [ CCCGTCCAACCCAACTCCACTCCATCCTCTGCAGCCGCAGTTGTGACGGAGACTCCAAGGCCATCACCATCCACCCGCTCTCCTCCTCCTCCTCCTCCGCTTGATCCCTCCATCTCCTCGATCGATCTCCACACTCCACTGCGCACTGCACCAGCAACGCCCCCCCCTGATCCCTCTCCACGGCTGCACCGGAGATGGCTTCCGCCCCCTTCGCCGTCTCCTCCTCACCGGCGGCTTCCGCCGTGGCCGCGCGCTCCAAGGTGTTGCGAGGAGGGAGGAGCGAGGCGAGGACTGGATGCCGCCTGGGGATCACGAGGAAGAATTTTGGACGTGTCATGATGGCCCTTGCAGTAGATGTCTCTCGTTTTGAAGGAGTGCCAATGGCCCCTCCAGACCCAATTCTCGGGGTTTCAGAAGCATTTAAGGCAGATCAAAATGATCTGAAGCTCAACCTTGGTGTTGGTGCCTATAGAACAGAAGAGTTACAGCCTTATG ] [+] EMBL AK105059 [ GCACTGCACCAGCAACGCCCCCCCCTGATCCCTCTCCACGGCTGCACCGGAGATGGCTTCCGCCCCCTTCGCCGTCTCCTCCTCACCGGCGGCTTCCGCCGTGGCCGCGCGCTCCAAGGTGTTGCGAGGAGGGAGGAGCGAGGCGAGGACTGGATGCCGCCTGGGGATCACGAGGAAGAATTTTGGACGTGTCATGATGGCCCTTGCAGTAGATGTCTCTCGTTTTGAAGGAGTGCCGATGGCCCCTCCAGACCCAATTCTCGGGGTTTCAGAAGCATTTAAGGCAGATCAAAATGATCTGAAGCTCAACCTTGGTGTTGGTGCCTATAGAACAGAAGAGTTACAGCCTTATGTCCTCAATGTGGTCAAGAAGGCTGAAACTCTTATGTTGGAGAAAGGAGAAAACAAGGAGTATCTGCCAATTGAAGGCTTAGCTGCATTTAACAAAGCAACTGCAGAACTATTGTTTGGAGCTGATAATCCAGTACTCAAGCAAGGACGTGTTGCTACTCTTCAGTCTCTCTCAGGAACCGGGTCGCTGCGCCTTGCTGCAGCATTTATACAAAGATATTTCCCTGAAGCAAAAGTACTGATATCATCTCCCACTTGGGGCAATCACAAGAACA TTTTCAATGATGCAAAGGTACCTTGGTCAGAGTACCGTTATTACGACCCCAAGACTGTTGGCTTGGATTTTGAGGGAATGATAGCTGACATACAGGCTGCCCCAGATGGATCTTTTGTTCTGCTGCATGGTTGCGCTCACAACCCAACTGGAATAGACCCAACTCCGGAACAATGGGAGAAAATTGCAGATGTCATTCAAGAGAAGAAACACATGCCTTTCTTTGATGTTGCATATCAGGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATCTTCTGTCAGGCTTTTTGTTCAACGGGGACTGGAAGTGTTTGTTGCGCAGTCTTATAGCAAAAACCTTGGTTTATATGCAGAAAGAATTGGAGCAATAAATGTTGTCTGCTCAACACCTGAAGTCGCAAACAGGGTGAAGAGCCAGCTGAAACGATTGGCACGGCCCATGTATTCGAATCCCCCTATTCAT GGTGCTAGGATAGTTGCCAACGTTGTTGGGGATCCAA CCATGTTTGGTGAATGGAAACAGGAGATGGAAGAAATGGCAGGGCGTATCAAGAATGTAAGACAGAAGCTTTATGATAGTTTGTCTGCAAAGGACGACAGTGGCAAGGACTGGTCTTTCATTCTGAGGCAGATAGGCATGTTCTCCTACACGGGCTTGAACAAAACTCAGAGTGATAATATGACCGACAAATGGCACATATACATGACAAAGGATGGGAGAATTTCGTTGGCTGGATTGTCCCTGGCTAAATGCGAGTACCTAGCTGACGCCATCATCGACTCCTTCCATAACGTTAGCTAGACGAGGATTCAGGTCACTGCTATTGTGGTTAATCCTTCAATATGCTGGGATTTTTGGTTCCTTCCAGCTTGAGTTCTTAGCCAGGATTGTATATCCGGCGCTACGTAATTTGGAGATAATAATGAATTTTGTCTGTGCAACAAACTTTGCATATGCTTTGTCGAATGTACACTGGCACTATGTTAGAAGCTTGAAATATCGAATTGAATAATAATGAGACTAGCAATAAGCCA ] [+] EMBL BP185003 [ acgaggGCGCGCTCCAAGGTGTTGCGAGGAGGGAGGAGCGAGGCGAGGACTGGATGCCGCCTGGGGATCACGAGGAAGAATTTTGGACGTGTCATGATGGCCCTTGCAGTAGATGTCTCTCGTTTTGAAGGAGTGCCGATGGCCCCTCCAGACCCAATTCTCGGGGTTTCAGAAGCATTTAAGGCAGATCAAAATGATCTGAAGCTCAACCTTGGTGTTGGTGCCTATAGAACAGAAGAGTTACAGCCTTATGTCCTCAATGTGGTCAAGAAGGCTGAAACTCTTATGTTGGAGAAAGGAGAAAACAAGGAGTATCTGCCAATTGAAGGCTTAGCTGCATTTAACAAAGCAACTGCAGAACTATTGTTTGGAGCTGATAATCCAGTACTCAAGCAAGGACGTGTTGCTACTCTTCAGTCTCTCTCAGGAACCGGGTCGCTGCGCCTTGCTGCAGCATTTATACAAAGATATTTCCCTGAAGCAAAAGTACTGATATCATCTCCCACTTGGGGCAATCACAAGAACATTTTTCAATGATGCAAAGGTACCTTGGTCAGAGTACCGTTATTACGACCCCAAGACTGTTGGCTTGGATTTTGAGGGAATGATAGCTGACATACAGGCTGCCCCAGATGGATCTTTTGTTC ] [+] EMBL AY157306 [ TCATGATGGCCCTTGCAGTAGATGTCTCTCGTTTTGAAGGAGTGCCGATGGCCCCTCCAGACCCAATTCTCGGGGTTTCAGAAGCATTTAAGGCAGATCAAAATGATCTGAAGCTCAACCTTGGTGTTGGTGCCTATAGAACAGAAGAGTTACAGCCTTATGTCCTCAATGTGGTCAAGAAGGCTGAAACTCTTATGTTGGAGAAAGGAGAAAACAAGGAGTATCTGCCAATTGAAGGCTTAGCTGCATTTAACAAAGCAACTGCAGAACTATTGTTTGGAGCTGATAATCCAGTACTCAAGCAAGGACGTGTTGCTACTCTTCAGTCTCTCTCAGGAACCGGGTCGCTGCGCCTTGCTGCAGCATTTATACAAAGATATTTCCCTGAAGCAAAAGTACTGATATCATCTCCCACTTGGGGCAATCACAAGAACA TTTTCAATGATGCAAAGGTACCTTGGTCAGAGTACCGTTATTACGACCCCAAGACTGTTGGCTTGGATTTTGAGGGAATGATAGCTGACATACAGGCTGCCCCAGATGGATCTTTTGTTCTGCTGCATGGTTGCGCTCACAACCCAACTGGAATAGACCCAACTCCGGAACAATGGGAGAAAATTGCAGATGTCATTCAAGAGAAGAAACACATGCCTTTCTTTGATGTTGCATATCAGGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATCTTCTGTCAGGCTTTTTGTTCAACGGGGACTGGAAGTGTTTGTTGCGCAGTCTTATAGCAAAAACCTTGGTTTATATGCAGAAAGAATTGGAGCAATAAATGTTGTCTGCTCAACACCTGAAGTCGCAAACAGGGTGAAGAGCCAGCTGAAACGATTGGCACGGCCCATGTATTCGAATCCCCCTATTCAT GGTGCTAGGATAGTTGCCAACGTTGTTGGGGATCCAA CCATGTTTGGTGAATGGAAACAGGAGATGGAAGAAATGGCAGGGCGTATCAAGAATGTAAGACAGAAGCTTTATGATAGTTTGTCTGCAAAGGACGACAGTGGCAAGGACTGGTCTTTCATTCTGAGGCAGATAGGCATGTTCTCCTACACGGGCTTGAACAAAACTCAGAGTGATAATATGACCGACAAATGGCACATATACATGACAAAGGATGGGAGAATTTCGTTGGCTGGATTGTCCCTGGCTAAATGCGAGTACCTAGCTGACGCCATCATCGACTCCTTCCATAACGTTAGCTAGACGA ] [-] EMBL CB662922 [ GCCAGTGGAAGCCTTGATGAAGATGCATCTTCTGTCAGGCTTTTTGTTCAACGGGGACTGGAAGTGTTTGTTGCGCAGTCTTATAGCAAAAACCTTGGTTTATATGCAGAAAGAATTGGAGCAATAAATGTTGTCTGCTCAACACCTGAAGTCGCAAACAGGGTGAAGAGCCAGCTGAAACGATTGGCACGGCCCATGTATTCGAATCCCCCTATTCAT GGTGCTAGGATAGTTGCCAACGTTGTTGGGGATCCAA CCATGTTTGGTGAATGGAAACAGGAGATGGAAGAAATGGCAGGGCGTATCAAGAATGTAAGACAGAAGCTTTATGATAGTTTGTCTGCAAAGGACGACAGTGGCAAGGACTGGTCTTTCATTCTGAGGCAGATAGGCATGTTCTCCTACACGGGCTTGAACAAAACTCAGAGTGATAATATGACCGACAAATGGCACATATACATGACAAAGGATGGGAGAATTTCGTTGGCTGGATTGTCCCTGGCTAAATGCGAGTACCTAGCTGACGCCATCATCGACTCCTTCCATAACGTTAGCTAGACGAGGATTCAGGTCACTGCTATTGTGGTTAATCCTTCAATATGCTGGGATTTTTGGTTCCTTCCAGCTTGAGTTCTTAGCCAGGATTGTATATCCGGCGCTACGTAATTTGGAGATAATAATGAATTTTGTCTGTGCAACAAACTTTGCATATGCTTTGTCGAATGTACACTGGCACTATGTTAGAAGCTTGAAATATCGAATTGAATAATAATGAGACTAGCAATAAGCCAA ] [+] EMBL BF430531 [ GCAAACAGGGTGAAGAGCCAGCTGAAACGATTGGCGCGGCCCATGTATTCGAATCCCCCTATTCAT GGTGCTAGGATAGTTGCCAACGTTGTTGGGGATCCAA CCATGTTTGGTGAATGGAAACAGGAGATGGAAGAAATGGCAGGGCGTATCAAGAATGTAAGACAGAAGCTTTATGATAGTTTGTCTGCAAAGGACGACAGTGGCAAGGACTGGTCTTTCATTCTGAGGCAGATAGGCATGTTCTCCTACACGGGCTTGAACAAAACTCAGAGTGATAATATGACCGACAAATGGCACATATACATGACAAAGGATGGGAGAATTTCGTTGGCTGGATTGTCCCTGGCTAAATGCGAGTACCTAGCTGACGCCATCATCGACTCCTTCCATAACGTTAGCTAGACGAGGATTCAGGTCACTGCTATTGTGGTTAATCCTTCAATATGCTGGGATTTTTGGCTCCTTCCAGCTTGAGTTCTTAGCCAGGATTGTATATCCGGCGCTACGTAATTTGGAGATAATAATGAATTTTGTCTGTGCAACAAACTTTGCATATGCTTTGTCGAATGTACACTGGCACTATGTTAGAAGCTTGAAATATCGAATTGAATAATAATGAGACTAGCAATAAGCCAAACT ] [+] EMBL AU065716 [ AACGATTGGCACGGCCCATGTATTCGAATCCCCCTATTCAT GGTGCTAGGATAGTTGCCAACGTTGTTGGGGATCCAA CCATGTTTGGTGAATGGAAACAGGAGATGGAAGAAATGGCAGGGCGTATCAAGAATGTAAGACAGAAGCTTTATGATAGTTTGTCTGCAAAGGACGACAGTGGCAAGGACTGGTCTTTCATTCTGAGGCAGATAGGCATGTTCTCCTACACGGGCTTGAACAAAACTCAGAGTGATAATATGACCGACAAATGGCACATATACATGACAAAGGATGGGAGAATTTCGTTGGCTGGATTGTCCCTGGCTAAATGCGAGTACCTAGCTGACGCCATCATCG NTCCTTCCATAACGTTAGCTAGACGGGG ] [+] EMBL CB483487 [ CTATTCATGGGTGCTAGGATAGTTGCCAACGTTGTTGGGGATCCAA CCATGTTTGGTGAATGGAAACAGGAGATGGAAGAAATGGCAGGGCGTATCAAGAATGTAAGACAGAAGCTTTATGATAGTTTGTCTGCAAAGGACGACAGTGGCTAGGACTGGTCTTTCATTCTGAGGCAGATAGGCATGTTCTCCTACACGGGCCTGAACAAAACTCAGAGTGATAATACGACCGACAAATGGCACATATACATGACAAAGGATGGGAGAATTTCGTTGGCTGGATTGTCCCTGGCTAAATGCGAGTACCTAGCTGAC ] [-] EMBL CF329393 [ TGCTAGGATAGTTGCCAACGTTGTTGGGGATCCAACCCATGTTTGGTGAATGGAAACAGGAGATGGAAGAAATGGCAGGGCGTATCAAGAATGTAAGACAGAAGCTTTATGATAGTTTGTCTGCAAAGGACGACAGTGGCAAGGACTGGTCTTTCATTCTGAGGCAGATAGGCATGTTCTCCTACACGGGCTTGAACAAAACTCAGAGTGATAATATGACCGACAAATGGCACATATACATGACAAAGGATGGGAGAATTTCGTTGGCTGGATTGTCCCTGGCTAAATGCGAGTACCTAGCTGACGCCATCATCGACTCCTTCCATAACGTTAGCTAGACGAGGATTCAGGTCACTGCTATTGTGGTTAATCCTTCAATATGCTGGGATTTTTGGTTCCTTCCAGCTTGAGTTCTTAGCCAGGATTGTATATCCGGCGCTACGTAATTTGGAGATAATAATGAATTTTGTCTGTGCAACAAACTTTGCGTATGCTTTGTCGAATGTACACTGGCACTATGTTAGAAGCTTGAAATATCGAATTGAATAATAATGAGACTAGCAATAAGCCAAACTAATTCCAATTTTAAAAAAA ] [-] EMBL CA756616 [ ATGACAAAGGATGGGAGAATTTCGTTGGCTGGATTGTCCCTGGCTAAATGCGAGTACCTAGCTGACGCCATCATCGACTCCTTCCATAACGTTAGCTAGACGAGGATTCAGGTCACTGCTATTGTGGTTAATCCTTCAATATGCTGGGATTTTTGGCTCCTTCCAGCTTGAGTTCTTAGCCAGGATTGTATATCCGGCGCTACGTAATTTGGAGATAATAATGAATTTTGTCTGTGCAACAAACTTTGCATATGCTTTGTCGAATGTACACTGGCACTATGTTAGAAGCTTGAAATATCGAATTGAATAATAATGAGACTAGCAATAAGCCAAACTAATTCCA ] [+] EMBL AU030484 [ CGCCATCATCGACTCCTTCCATAACGTTAGCTAGACGNGGATTCAGGTCNCTGCTATTGTGGTTAATCCTTCAATATGCTGGGATTTTTGGTTCCTTCCAGCTTGAGTTCTTAGCCNGGATTGTATATCCGGCGCTACGTAATTTGGAGATAATAATGAATTTTGTCTGTGCAACAAACTTTGCATATGCTTTGTCGAATGTACACTGGCACTNTGTTAGAAGCTTGAAATATCGAATTGAATAATAATGAGNCTNGCNNTAAGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU030494 [ GCCATCATCGACTCCTTCCATAACGTTAGCTAGACGNGGATTCAGGTCNCTGCTATTGTGGTTAANCCTTCAATATGCTGGGATTTTTGGTTCCTTCCAGCTTGAGTTCTTAGCCNGGATTGTATATCCGGCGCTACGTAATTTGGNGATAATAATGAATTTTGTCTGTGCAACAAACTTTGCATATGCTTTGTCGAATGTACACTGGCACTATGTTAGAAGCTTGAAATATCGAATTGAATAATAATGAGNCTNGCNATAAGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14266#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1044 fasta sequence [CTCTCAGGAACCGGGTCGCTGCGCCTTGCTGCAGCATTTATACAAAGATATTTCCCTGAAGCAAAAGTACTGATATCATCTCCCACTTGGGGCAATCACAAGAACATTTTCAATGATGCAAAGGTACCTTGGTCAGAGTACCGTTATTACGACCCCAAGACTGTTGGCTTGGATTTTGAGGGAATGATAGCTGACATACAGGCTGCCCCAGATGGATCTTTTGTTCTGCTGCATGGTTGCGCTCACAACCCAACTGGAATAGACCCAACTCCGGAACAATGGGAGAAAATTGCAGATGTCATTCAAGAGAAGAAACACATGCCTTTCTTTGATGTTGCATATCAGGTGAAATGTTCTCACTTTATTATTTCGTTTTTCTCTGCATGAAAACAAATATCTTACTGACTAGCAAATATTTCTCTGCAGGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATCTTCTGTCAGGCTTTTTGTTCAACGGGGACTGGAAGTGTTTGTTGCGCAGTCTTATAGCAAAAACCTTGGTTTATATGCAGAAAGAATTGGAGCAATAAATGTTGTCTGCTCAACACCTGAAGTCGCAAACAGGGTGAAGAGCCAGCTGAAACGATTGGCACGGCCCATGTATTCGAATCCCCCTATTCATGGTGCTAGGATAGTTGCCAACGTTGTTGGGGATCCAACCATGTTTGGTGAATGGAAACAGGAGATGGAAGAAATGGCAGGGCGTATCAAGAATGTAAGACAGAAGCTTTATGATAGTTTGTCTGCAAAGGACGACAGTGGCAAGGACTGGTCTTTCATTCTGAGGCAGATAGGCATGNTCTCCTACACGGGCTTGAACAAAACTCAGAGTGATAATATGACCGACAAATGGCACATATACATGACAAAGGATGGGAGAATTCGTTGGCTGGATTGTCCTGGCTAATGCGAGTNCTACTGCGCCATCATCGCTCCTTCNATACGTAGCTAACGAGATTCAGNCCTGCTATGTGGTANCCTCCATAGCTGGNTTGGTCCTCCACTAAGTCTANCA] [+] EMBL CB662921 [CTCTCAGGAACCGGGTCGCTGCGCCTTGCTGCAGCATTTATACAAAGATATTTCCCTGAAGCAAAAGTACTGATATCATCTCCCACTTGGGGCAATCACAAGAACATTTTCAATGATGCAAAGGTACCTTGGTCAGAGTACCGTTATTACGACCCCAAGACTGTTGGCTTGGATTTTGAGGGAATGATAGCTGACATACAGGCTGCCCCAGATGGATCTTTTGTTCTGCTGCATGGTTGCGCTCACAACCCAACTGGAATAGACCCAACTCCGGAACAATGGGAGAAAATTGCAGATGTCATTCAAGAGAAGAAACACATGCCTTTCTTTGATGTTGCATATCAGGTGAAATGTTCTCACTTTATTATTTCGTTTTTCTCTGCATGAAAACAAATATCTTACTGACTAGCAAATATTTCTCTGCAGGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATCTTCTGTCAGGCTTTTTGTTCAACGGGGACTGGAAGTGTTTGTTGCGCAGTCTTATAGCAAAAACCTTGGTTTATATGCAGAAAGAATTGGAGCAATAAATGTTGTCTGCTCAACACCTGAAGTCGCAAACAGGGTGAAGAGCCAGCTGAAACGATTGGCACGGCCCATGTATTCGAATCCCCCTATTCATGGTGCTAGGATAGTTGCCAACGTTGTTGGGGATCCAACCATGTTTGGTGAATGGAAACAGGAGATGGAAGAAATGGCAGGGCGTATCAAGAATGTAAGACAGAAGCTTTATGATAGTTTGTCTGCAAAGGACGACAGTGGCAAGGACTGGTCTTTCATTCTGAGGCAGATAGGCATGNTCTCC ] [+] EMBL AU065721 [ AACGATTGGCACGGCCCATGTATTCGAATCCCCCTATTCATGGTGCTAGGATAGTTGCCAACGTTGTTGGGGATCCAACCATGTTTGGTGAATGGAAACAGGAGATGGAAGAAATGGCAGGGCGTATCAAGAATGTAAGACAGAAGCTTTATGATAGTTTGTCTGCAAAGGACGACAGTGGCAAGGACTGGTCTTTCATTCTGAGGCAGATAGGCATGTTCTCCTACACGGGCTTGAACAAAACTCAGAGTGATAATATGACCGACAAATGGCACATATACATGACAAAGGATGGGAGAATTCGTTGGCTGGATTGTCCTGGCTAATGCGAGTNCTACTGCGCCATCATCGCTCCTTCNATACGTAGCTAACGAGATTCAGNCCTGCTATGTGGTANCCTCCATAGCTGGNTTGGTCCTCCACTAAGTCTANCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14266#0 AATTTTCCCAGGAATCTGAGCGGCCGCAAGGCGTCACGCGAAACCCGTCCAACCCAACTC 60 consensus_14266#1 ------------------------------------------------------------ consensus_14266#0 CACTCCATCCTCTGCAGCCGCAGTTGTGACGGAGACTCCAAGGCCATCACCATCCACCCG 120 consensus_14266#1 ------------------------------------------------------------ consensus_14266#0 CTCTCCTCCTCCTCCTCCTCCGCTTGATCCCTCCATCTCCTCGATCGATCTCCACACTCC 180 consensus_14266#1 ------------------------------------------------------------ consensus_14266#0 ACTGCGCACTGCACCAGCAACGCCCCCCCCTGATCCCTCTCCACGGCTGCACCGGAGATG 240 consensus_14266#1 ------------------------------------------------------------ consensus_14266#0 GCTTCCGCCCCCTTCGCCGTCTCCTCCTCACCGGCGGCTTCCGCCGTGGCCGCGCGCTCC 300 consensus_14266#1 ------------------------------------------------------------ consensus_14266#0 AAGGTGTTGCGAGGAGGGAGGAGCGAGGCGAGGACTGGATGCCGCCTGGGGATCACGAGG 360 consensus_14266#1 ------------------------------------------------------------ consensus_14266#0 AAGAATTTTGGACGTGTCATGATGGCCCTTGCAGTAGATGTCTCTCGTTTTGAAGGAGTG 420 consensus_14266#1 ------------------------------------------------------------ consensus_14266#0 CCGATGGCCCCTCCAGACCCAATTCTCGGGGTTTCAGAAGCATTTAAGGCAGATCAAAAT 480 consensus_14266#1 ------------------------------------------------------------ consensus_14266#0 GATCTGAAGCTCAACCTTGGTGTTGGTGCCTATAGAACAGAAGAGTTACAGCCTTATGTC 540 consensus_14266#1 ------------------------------------------------------------ consensus_14266#0 CTCAATGTGGTCAAGAAGGCTGAAACTCTTATGTTGGAGAAAGGAGAAAACAAGGAGTAT 600 consensus_14266#1 ------------------------------------------------------------ consensus_14266#0 CTGCCAATTGAAGGCTTAGCTGCATTTAACAAAGCAACTGCAGAACTATTGTTTGGAGCT 660 consensus_14266#1 ------------------------------------------------------------ consensus_14266#0 GATAATCCAGTACTCAAGCAAGGACGTGTTGCTACTCTTCAGTCTCTCTCAGGAACCGGG 720 consensus_14266#1 ---------------------------------------------CTCTCAGGAACCGGG 15 *************** consensus_14266#0 TCGCTGCGCCTTGCTGCAGCATTTATACAAAGATATTTCCCTGAAGCAAAAGTACTGATA 780 consensus_14266#1 TCGCTGCGCCTTGCTGCAGCATTTATACAAAGATATTTCCCTGAAGCAAAAGTACTGATA 75 ************************************************************ consensus_14266#0 TCATCTCCCACTTGGGGCAATCACAAGAACATTTTCAATGATGCAAAGGTACCTTGGTCA 840 consensus_14266#1 TCATCTCCCACTTGGGGCAATCACAAGAACATTTTCAATGATGCAAAGGTACCTTGGTCA 135 ************************************************************ consensus_14266#0 GAGTACCGTTATTACGACCCCAAGACTGTTGGCTTGGATTTTGAGGGAATGATAGCTGAC 900 consensus_14266#1 GAGTACCGTTATTACGACCCCAAGACTGTTGGCTTGGATTTTGAGGGAATGATAGCTGAC 195 ************************************************************ consensus_14266#0 ATACAGGCTGCCCCAGATGGATCTTTTGTTCTGCTGCATGGTTGCGCTCACAACCCAACT 960 consensus_14266#1 ATACAGGCTGCCCCAGATGGATCTTTTGTTCTGCTGCATGGTTGCGCTCACAACCCAACT 255 ************************************************************ consensus_14266#0 GGAATAGACCCAACTCCGGAACAATGGGAGAAAATTGCAGATGTCATTCAAGAGAAGAAA 1020 consensus_14266#1 GGAATAGACCCAACTCCGGAACAATGGGAGAAAATTGCAGATGTCATTCAAGAGAAGAAA 315 ************************************************************ consensus_14266#0 CACATGCCTTTCTTTGATGTTGCATATCAGG----------------------------- 1051 consensus_14266#1 CACATGCCTTTCTTTGATGTTGCATATCAGGTGAAATGTTCTCACTTTATTATTTCGTTT 375 ******************************* consensus_14266#0 ----------------------------------------------------GTTTTGCC 1059 consensus_14266#1 TTCTCTGCATGAAAACAAATATCTTACTGACTAGCAAATATTTCTCTGCAGGGTTTTGCC 435 ******** consensus_14266#0 AGTGGAAGCCTTGATGAAGATGCATCTTCTGTCAGGCTTTTTGTTCAACGGGGACTGGAA 1119 consensus_14266#1 AGTGGAAGCCTTGATGAAGATGCATCTTCTGTCAGGCTTTTTGTTCAACGGGGACTGGAA 495 ************************************************************ consensus_14266#0 GTGTTTGTTGCGCAGTCTTATAGCAAAAACCTTGGTTTATATGCAGAAAGAATTGGAGCA 1179 consensus_14266#1 GTGTTTGTTGCGCAGTCTTATAGCAAAAACCTTGGTTTATATGCAGAAAGAATTGGAGCA 555 ************************************************************ consensus_14266#0 ATAAATGTTGTCTGCTCAACACCTGAAGTCGCAAACAGGGTGAAGAGCCAGCTGAAACGA 1239 consensus_14266#1 ATAAATGTTGTCTGCTCAACACCTGAAGTCGCAAACAGGGTGAAGAGCCAGCTGAAACGA 615 ************************************************************ consensus_14266#0 TTGGCACGGCCCATGTATTCGAATCCCCCTATTCATGGTGCTAGGATAGTTGCCAACGTT 1299 consensus_14266#1 TTGGCACGGCCCATGTATTCGAATCCCCCTATTCATGGTGCTAGGATAGTTGCCAACGTT 675 ************************************************************ consensus_14266#0 GTTGGGGATCCAACCATGTTTGGTGAATGGAAACAGGAGATGGAAGAAATGGCAGGGCGT 1359 consensus_14266#1 GTTGGGGATCCAACCATGTTTGGTGAATGGAAACAGGAGATGGAAGAAATGGCAGGGCGT 735 ************************************************************ consensus_14266#0 ATCAAGAATGTAAGACAGAAGCTTTATGATAGTTTGTCTGCAAAGGACGACAGTGGCAAG 1419 consensus_14266#1 ATCAAGAATGTAAGACAGAAGCTTTATGATAGTTTGTCTGCAAAGGACGACAGTGGCAAG 795 ************************************************************ consensus_14266#0 GACTGGTCTTTCATTCTGAGGCAGATAGGCATGTTCTCCTACACGGGCTTGAACAAAACT 1479 consensus_14266#1 GACTGGTCTTTCATTCTGAGGCAGATAGGCATGNTCTCCTACACGGGCTTGAACAAAACT 855 ********************************* ************************** consensus_14266#0 CAGAGTGATAATATGACCGACAAATGGCACATATACATGACAAAGGATGGGAGAATTTCG 1539 consensus_14266#1 CAGAGTGATAATATGACCGACAAATGGCACATATACATGACAAAGGATGGGAGAATT-CG 914 ********************************************************* ** consensus_14266#0 TTGGCTGGATTGTCCCTGGCTAAATGCGAGTACCTAGCTGACGCCATCATCGACTCCTTC 1599 consensus_14266#1 TTGGCTGGATTGTCC-TGGCTAA-TGCGAGTNCT--ACTG-CGCCATCATCG-CTCCTTC 968 *************** ******* ******* * *** *********** ******* consensus_14266#0 CATAACGTTAGCTAGACGAGGATTCAGGTCACTGCTATTGTGGTTAATCCTTCAATATGC 1659 consensus_14266#1 NATA-CGT-AGCTA-ACGAG-ATTCAGNCC--TGCTAT-GTGGTANCCTCCATAGCTGGN 1021 *** *** ***** ***** ****** * ****** ***** * * * consensus_14266#0 TGGGATTTTTGGTTCCTTCCAGCTTGAGTTCTTAGCCAGGATTGTATATCCGGCGCTACG 1719 consensus_14266#1 TTGG-TCCTCCACTAAGTCTANCA------------------------------------ 1044 * ** * * * ** * * consensus_14266#0 TAATTTGGAGATAATAATGAATTTTGTCTGTGCAACAAACTTTGCATATGCTTTGTCGAA 1779 consensus_14266#1 ------------------------------------------------------------ consensus_14266#0 TGTACACTGGCACTATGTTAGAAGCTTGAAATATCGAATTGAATAATAATGAGACTAGCA 1839 consensus_14266#1 ------------------------------------------------------------ consensus_14266#0 ATAAGCCAAACTAATTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1889 consensus_14266#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||