These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14268#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 933 fasta sequence [GGAAAGGAAAGCTCGGGATCGGAGCAGTAGTAGTACTAGGACGACTCAACGACGACGATGCTTCGCCGCCGCGGCTTCTGCTGCTGCTCCGGCGCACCCGCCGCCGCCGCCGCCGCCTTGCTCCTACTGGCCGTGGCGGCGGCCGCCCCCCGCGCCGCCGGGTTCCACCTCGGGGGCGACGAGAGCGTCCTCGTGCGGGGCATGCTCGCCGCGATCCGCCGCGAGCAGGCCGAGGCGGAGGACGCGGCGCGCTTCGCCGTCGCGGAGTACAACAAGAACCAGGGTGCTGAATTGGAATTTGCACGGATAGTGAAAGCCAAGCGTCAAGTTGTGACTGGTACCTTGCATGACCTGATGTTGGAGGTAGTTGATTCTGGAAAGAAAAGCCTGTATAGTGCAAAGGTATGGGTGAAGCCGTGGCTAGATTTTAAGGCAGTCGTCGAGTTCCGTCACGTTGGGGACTCCCAGTCACAGTCGGCCACTGCTGCTGATGATAACGCTGGGCAAGATACTGCTGATCCCACTGTGGCATCAAGGAACGACCTGCACAACACTGAGAACAATAAAGTCTCTGTTGTCCTGTCAACCTTTTCTCAGACATACTCGGTGTGAATCTAGCTCCATGGAGAGGATATGGAAGACTTGAGCTTCTGAGAGCTAGCTGTCAGTAATTTGTGAAGTAAAGTAGCTGTTATCCTTTTGTGAAGTTTTCCCCACTGTTATGGAATGAT-GTCTAGATCGTAATATGCCGTTGAGCAGACATGAGTTTGACATCTGGAGTGTATATTTGTTGCTGCAAACTGCAAAGTGAACACTCCCATGTATATTCCATACCTTTCGTTCCCATGCATGTATATAAGGCATTACTGCTACCGTTGTATGGTATACCCGCTGCATGTGTTTGCATTTCAAAAAAAAAAAAAAAAAAAAAAG] [+] EMBL AK065214 [GGAAAGGAAAGCTCGGGATCGGAGCAGTAGTAGTACTAGGACGACTCAACGACGACGATGCTTCGCCGCCGCGGCTTCTGCTGCTGCTCCGGCGCACCCGCCGCCGCCGCCGCCGCCTTGCTCCTACTGGCCGTGGCGGCGGCCGCCCCCCGCGCCGCCGGGTTCCACCTCGGGGGCGACGAGAGCGTCCTCGTGCGGGGCATGCTCGCCGCGATCCGCCGCGAGCAGGCCGAGGCGGAGGACGCGGCGCGCTTCGCCGTCGCGGAGTACAACAAGAACCAGGGTGCTGAATTGGGATTTGCACGGATAGTGAAAGCCAAGCGTCAAGTTGTGACTGGTACCTTGCATGACCTGATGTTGGAGGTAGTTGATTCTGGAAAGAAAAGCCTGTATAGTGCAAAGGTATGGGTGAAGCCGTGGCTAGATTTTAAGGCAGTCGTCGAGTTCCGTCACGTTGGGGACTCCCAGTCACAGTCGGCCACTGCTGCTGATGATAACGCTGGGCAAGATACTGCTGATCCCACTGTGGCATCAAGGAACGACCTGCACAACACTGAGAACAATAAAGTCTCTGTTGTCCTGTCAACCTTTTCTCAGACATACTCGGTGTGAATCTAGCTCCATGGAGAGGATATGGAAGACTTGAGCTTCTGAGAGCTAGCTGTCAGTAATTTGTGAAGTAAAGTAGCTGTTATCCTTTTGTGAAGTTTTCCCCACTGTTATGGAATGAT GTCTAGATCGTAATATGCCGTTGAGCAGACATGAGTTTGACATCTGGAGTGTATATTTGTTGCTGCAAACTGCAAAGTGAACACTCCCATGTATATTCCATACCTTTCGTTCCCATGCATGTATATAAGGCATTACTGCTACCGTTGTATGGTATACCCGCTGCATGT ] [+] EMBL CA757357 [ GGGATCGGAGCAGTAGTAGTACTAGGACGACTCAACGACGACGATGCTTCGCCGCCGCGGCTTCTGCTGCTGCTCCGGCGCACCCGCCGCCGCCGCCGCCGCCTTGCTCCTACTGGCCGTGGCGGCGGCCGCCCCCCGCGCCGCCGGGTTCCACCTCGGGGGCGACGAGAGCGTCCTCGTGCGGGGCATGCTCGCCGCGATCCGCCGCGAGCAGGCCGAGGCGGAGGACGCGGCGC ] [+] EMBL CB681678 [ GGATCGGAGCAGTAGTAGTACTAGGACGACTCAACGACGACGATGCTTCGCCGCCGCGGCTTCTGCTGCTGCTCCGGCGCACCCGCCGCCGCCGCCGCCGCCTTGCTCCTACTGGCCGTGGCGGCGGCCGCCCCCCGCGCCGCCGGGTTCCACCTCGGGGGCGACGAGAGCGTCCTCGTGCGGGGCATGCTCGCCGCGATCCGCCGCGAGCAGGCCGAGGCGGAGGACGCGGCGCGCTTCGCCGTCGCGGAGTACAACAAGAACCAGGGTGCTGAATTGGAATTTGCACGGATAGTGAAAGCCAAGCGTCAAGTTGTGACTGGTACCTTGCATGACCTGATGTTGGAGGTAGTTGATTCTGGAAAGAAAAGCCTGTATAGTGCAAAGGTATGGGTGAAGCCGTGGCTAGATTTTAAGGCAGTCGTCGAGTTCCGTCACGTTGGGGACTCCCAGTCACAGTCGGCCACTGCTGCTGATGATAACGCTGGGCAAGATACTGCTGATCCCACTGTGGCATCAAGGAACGACCTGCACAACACTGAGAACAATAAAGTCTCTGTTGTCCTGTCAACCTTTTCTCAGACATACTCGGTGTGAATCTAGCTCCATGGAGAGGATATGGAAGACTTGAGCTTCTGAGAGCTAGCTGTCAGTAATTTGTGAAGTAAAGTAGCTGTTATCCTTTTGTGAAGTTTTCCCCACTGTTATGGAATGAT GTCTAG ] [+] EMBL CB660535 [ ACGACGACGATGCTTCGCCGCCGCGGCTTCCGCTGCTGCTCCGGCGCACCCGCCGCCGCCGCCGCCGCCTTGCTCCTACTGGCCGTGGCGGCGGCCGCCCCCCGCGCCGCCGGGTTCCACCTCGGGGGCGACGAGAGCGTCCTCGTGCGGGGCATGCTCGCCGCGATCCGCCGCGAGCAGGCCGAGGCGGAGGACGCGGCGCGCTTCGCCGTCGCGGAGTACAACAAGAACCAGGGTGCTGAATTGGAATTTGCACGGATAGTGAAAGCCAAGCGTCAAGTTGTGACTGGTACCTTGCATGACCTGATGTTGGAGGTAGTTGATTCTGGAAAGAAAAGCCTGTATAGTGCAAAGGTATGGGTGAAGCCGTGGCTAGATTTTAAGGCAGTCGTCGAGTTCCGTCACGTTGGGGACTCCCAGTCACAGTCGGCCACTGCTGCTGATGATAACGCTGGGCAAGATACTGCTGATCCCACTGTGGCATCAAGGAACGACCTGCACAACACTGAGAACAATAAAGTCTCTGTTGTCCTGTCAACCTTTTCTCAGACATACTCGGTGTGAATCTAGCTCCATGGAGAGGATATGGAAGACTTGAGCTTCTGAGAGCTAGCTGTCAGTAATTTGTGAAGTAAAGTAGCTGTTATCCTTTTGTGAAGTTTTCCCCACTGTTATGGAATGAT GTCTAGATCGTAATATGCCGTTGAGCAGACATGAGTTTGACATCTGGAGTGTATATTTGTTGCTGCAAACTGCAAAGTGAACAC ] [-] EMBL CB681679 [ GCAGGCCGAGGCGGAGGACGCGGCGCGCTTCGCCGTCGCGGAGTACAACAAGAACCAGGGTGCTGAATTGGAATTTGCACGGATAGTGAAAGCCAAGCGTCAAGTTGTGACTGGTACCTTGCATGACCTGATGTTGGAGGTAGTTGATTCTGGAAAGAAAAGCCTGTATAGTGCAAAGGTATGGGTGAAGCCGTGGCTAGATTTTAAGGCAGTCGTCGAGTTCCGTCACGTTGGGGACTCCCAGTCACAGTCGGCCACTGCTGCTGATGATAACGCTGGGCAAGATACTGCTGATCCCACTGTGGCATCAAGGAACGACCTGCACAACACTGAGAACAATAAAGTCTCTGTTGTCCTGTCAACCTTTTCTCAGACATACTCGGTGTGAATCTAGCTCCATGGAGAGGATATGGAAGACTTGAGCTTCTGAGAGCTAGCTGTCAGTAATTTGTGAAGTAAAGTAGCTGTTATCCTTTTGTGAAGTTTTCCCCACTGTTATGGAATGAT GTCTAGATCGTAATATGCCGTTGAGCAGACATGAGTTTGACATCTGGAGTGTATATTTGTTGCTGCAAACTGCAAAGTGAACACTCCCATGTATATTCCATACCTTTCGTTCCCATGCATGTATATAAGGCATTACTGCTACCGTTGTATGGTATACCAGGGGCATGTGTTTGCATTTCATCGATTCTAAAAAAAAAAAAgg] [+] EMBL AK062014 [ AGGGTGCTGAATTGGAATTTGCACGGATAGTGAAAGCCAAGCGTCAAGTTGTGACTGGTACCTTGCATGACCTGATGTTGGAGGTAGTTGATTCTGGAAAGAAAAGCCTGTATAGTGCAAAGGTATGGGTGAAGCCGTGGCTAGATTTTAAGGCAGTCGTCGAGTTCCGTCACGTTGGGGACTCCCAGTCACAGTCGGCCACTGCTGCTGATGATAACGCTGGGCAAGATACTGCTGATCCCACTGTGGCATCAAGGAACGACCTGCACAACACTGAGAACAATAAAGTCTCTGTTGTCCTGTCAACCTTTTCTCAGACATACTCGGTGTGAATCTAGCTCCATGGAGAGGATATGGAAGACTTGAGCTTCTGAGAGCTAGCTGTCAGTAATTTGTGAAGTAAAGTAGCTGTTATCCTTTTGTGAAGTTTTCCCCACTGTTATGGAATGAT GTCTAGATCGTAATATGCCGTTGAGCAGACATGAGTTTGACATCTGGAGTGTATATTTGTTGCTGCAAACTGCAAAGTGAACACTCCCATGTATATTCCATACCTTTCGTTCCCATGCATGTATATAAGG ] [+] EMBL AU094227 [ GGGTGCTGAATTGGAATTTGCACGGATAGTGAAAGCCAAGCGTCAAGTTGTGACTGGTACCTTGCATGACCTGATGTTGGAGGTAGTTGATTCTGGAAAGAAAAGCCTGTATAGTGCAAAGGTATGGGTGAAGCCGTGGCTAGATTTTAAGGCAGTCGTCGAGTTCCGTCACGTTGGGGACTCCCAGTCACAGTCGGCCACTGCTGCTGATGATAACGCTGGGCAAGATACTGCTGATCCCACTGTGGCATCAAGGAACGACCTGCACAACACTGAGAACAATAAAGTCTCTGTTGTCCTGTCAACCTTTTCTCAGACATACTCGGTGTGAATCTAGCTCCATGGAGAGGATATGGAAGACTTGAGCTTCTGAGAGCTAGCTGTCAGTAATTTGTGAAGTAAAGTAGCTGTTATCCTTTTGTGAAGTTTTC ] [+] EMBL AU182539 [ GTGTGAATCTAGCTCCATGGANAGGATATGGAAGACTTGAGCTTTTGANAGCTAGCTGTCAGTAATTTGTGAAGTAAAGTAGCTGTTATCCTTTTGTGAAGTTTTCCCCNCTGTTATGGAATGATGGTNTAGATCGTAATATGCCGTTGAGCANACATGAGTTTGACATNTGGAGTGTATATTTGTTGCTGCAAACTGCAAAGTGAACACTCCCATGTATATTCCATACCTTTCGTTCCCATGCATGTATATAAGGCATTACTGCTACCGTTGTATGGTATACCCNCTGCATGTGTTTGCA AAAAAAAAAAAAAAAAAAAAAAa] [+] EMBL BM038096 [ ccGATCGTAATATGCCGTTGAGCAGACATGAGTTTGACATCTGGAGTGTATATTTGTTGCTGC AACTGCAAAGTGAACACTCCCATGTATATTCCATACCTTTCGTTCCCATGCATGTATATAAGGCATTACTGCTACCGTTGTATGGTATACCCGCTGCATGTGTTTGCATTTCAAAAA ] [-] EMBL CF330831 [ ATGTATATTCCATACCTTTGGTTCCCATGCATGTATATAAGGCATTACTGCTACCGTTGTATGGTATACCCGCTGCATGTGTTTGCTTTTCAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL CF330832 [ TTCCATACCTTTCGTTCCCATGCATGTATATAAGGCATTACTGCTACCGTTGTATGGTATACCCGCTGCATGTGTCTGCATTTCAAAAAAAAAAAAAAAAAAAAA ] consensusID : consensus_14268#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 679 fasta sequence [GTGCTGAATTGGAATTTGCCGGATAGTGAAAGCCAAGCGTCAAGTTGTGACTGGTACCTTGCATGACCTGATGTTGNAGGTAGTTGATTCTGGAAAGAAAAGCCTGTATAGTGCAAAGGTATGGGTGAAGCCGTGGCTAGATTTTAAGGCAGTCGTCGAGTTCCGTCACGTTGGGGACTCCCAGTCACAGTCGGCCACTGCTGCTGATGATAACGCTGGGCAAGATACTGCTGATCCCACTGTGGCATCAAGGAACGACCTGCACAACACTGAGAACAATAAAGTCTCTGTTGTCCTGTCAACCTTTTCTCAGACATACTCGGTGTGAATCTAGCTCCATGGAGAGGATATGGAAGACTTGAGCTTCTGAGAGCTAGCTGTCAGTAATTTGTGAAGTAAAGTAGCTGTTATCCTTTTGTGAAGTTTTCCCCACTGTTATGGAATGATGTCTAGATCGTAATATGCCGTTGAGCAGACATGAGTTTGACATCTGGAGTGTATATTTGTTGCTGCAAACTGCAAAGTGAACACTCCCATGTATATTCCATACCTTTCGTTCCCATGCATGTATATAAGGCATTACT-GCTACCGTTGTATGGTATACCCGCTGCATGTGTTTGCATTTCATCGATTCTTCTCCTGGTCTATTGTCGCTGAAAAATGCTTTGTCGTCCAAAAA] [+] EMBL AU094228 [GTGCTGAATTGGAATTTGCCGGATAGTGAAAGCCAAGCGTCAAGTTGTGACTGGTACCTTGCATGACCTGATGTTGNAGGTAGTTGATTCTGGAAAGAAAAGCCTGTATAGTGCAAAGGTATGGGTGAAGCCGTGGCTAGATTTTAAGGCAGTCGTCGAGTTCCGTCACGTTGGGGACTCCCAGTCACAGTCGGCCACTGCTGCTGATGATAACGCTGGGCAAGATACTGCTGATCCCACTGTGGCATCAAGGAACGACCTGCACAACACTGAGAACAATAAAGTCTCTGTTGTCCTGTCAACCTTTTCTCAGACATACTCGGTGTGAATCTAGCTCCATGGAGAGGATATGGAAGACTTGAGCTTCTGAGAGCTAGCTGTCAGTAATTTGTGAAGTAAAGTAGCTGTTATCCTTTTGTGAAGTTTTCCCCACTGTTATGGAATGATGTCTAGATCGTAATATGCCGTTGAGCAGACATGAGTTTGACATCTGGAGTGTATATTTGTTGCTGCAAACTGCAAAGTGAACACTCCCATGTATATTCCATACCTTTCGTTCCCATGCATGTATATAAGGCATTACT GCTACCGTTGTATGGTATACCCGCTGCATGTGTTTGCATTTCATCGATTCTTCTCCTGGTCTATTGTCGCTGAAAAATGCTTTGTCGTCCAAAAA] [+] EMBL BI799900 [ AGTC GCCACTGATGCTGATGGTAACGCTGGGCAAGATACTGCTGATCCCACTGTGGCATCAAGGAACGACCTGCACAACACTGAGAAC ATAAAGTCTCTGTTGACCTGTCAACCTTTTCTCAGACATACTCGGTGTGAATCTAGCTCCATGGAGAGGATATGGAAGACTTGAGCTTCTGAGAGCTAGCTGTCAGTAATTTGTGAAGTAAAGTAGCTGTTATCCTTTTGTGAAGTTTTCCCCACTGTTATGGAATGATGTCTAGATCGTAATATGCCGTTGACCAGACATGAGTTTGACATCTGGAGTGTATATTTGTTGCTGCCAACTGCAAAGTGAACACTCCCATGTATATTCCATACCTTTCGTTCCCATGCATGTATATAAGCCATTACT GCTACCGTTGTATGGTAaaaa ] [+] EMBL AU070697 [ AGATACTGCTGATCCCACTGTGGCATCAAGGAACGACCTGCACAACACTGAGAACAATAAAGTCTCTGTTGTCCTGTCAACCTTTTCTCAGACATACTCGGTGTGAATCTAGCTCCATGGAGAGGATATGGAAGACTTGAGCTTCTGAGAGCTAGCTGTCAGTAATTTGTGAAGTAAAGTAGCTGTTATCCTTTTGTGAAGTTTTCCCCACTGTTATGGAATGATGTCTAGATCGTAATATGCCGTTGAGCAGACATGAGTTTGACATCTGGAGTGTATATTTGTTGCTGCAAACTGCAAAGTGAACACTCCCATGTATATTCCATACCTTTCGTTCCCATGCATGTATATAAGGCATTACTGGCTACCGTTGTATGGTATACCCGCTGCATGTGTTTGCATTTCATCGATTaaaaaaaaa ] [+] EMBL AU165619 [ CTCAGACATACTCGGTGTGAATCTAGCTCCATGGAGAGGATATGGAAGACTTGAGCTTCTGAGAGCTAGCTGTCAGTAATTTGTGAAGTAAAGTAGCTGTTATCCTTTTGTGAAGTTTTCCCCACTGTNATGGAATGATGTCTAGATCGTAATATGCCGTTGAGCAGACATGAGTTTGACATCTGGAGTGTATATTTNTNGCTGCAAACTGCAAAGTGAACACTCCCATGTATATTCCATACCTTTCGTTCCCATGCATGTATATAAGGCATTACT GC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14268#0 GGAAAGGAAAGCTCGGGATCGGAGCAGTAGTAGTACTAGGACGACTCAACGACGACGATG 60 consensus_14268#1 ------------------------------------------------------------ consensus_14268#0 CTTCGCCGCCGCGGCTTCTGCTGCTGCTCCGGCGCACCCGCCGCCGCCGCCGCCGCCTTG 120 consensus_14268#1 ------------------------------------------------------------ consensus_14268#0 CTCCTACTGGCCGTGGCGGCGGCCGCCCCCCGCGCCGCCGGGTTCCACCTCGGGGGCGAC 180 consensus_14268#1 ------------------------------------------------------------ consensus_14268#0 GAGAGCGTCCTCGTGCGGGGCATGCTCGCCGCGATCCGCCGCGAGCAGGCCGAGGCGGAG 240 consensus_14268#1 ------------------------------------------------------------ consensus_14268#0 GACGCGGCGCGCTTCGCCGTCGCGGAGTACAACAAGAACCAGGGTGCTGAATTGGAATTT 300 consensus_14268#1 -------------------------------------------GTGCTGAATTGGAATTT 17 ***************** consensus_14268#0 GCACGGATAGTGAAAGCCAAGCGTCAAGTTGTGACTGGTACCTTGCATGACCTGATGTTG 360 consensus_14268#1 GC-CGGATAGTGAAAGCCAAGCGTCAAGTTGTGACTGGTACCTTGCATGACCTGATGTTG 76 ** ********************************************************* consensus_14268#0 GAGGTAGTTGATTCTGGAAAGAAAAGCCTGTATAGTGCAAAGGTATGGGTGAAGCCGTGG 420 consensus_14268#1 NAGGTAGTTGATTCTGGAAAGAAAAGCCTGTATAGTGCAAAGGTATGGGTGAAGCCGTGG 136 *********************************************************** consensus_14268#0 CTAGATTTTAAGGCAGTCGTCGAGTTCCGTCACGTTGGGGACTCCCAGTCACAGTCGGCC 480 consensus_14268#1 CTAGATTTTAAGGCAGTCGTCGAGTTCCGTCACGTTGGGGACTCCCAGTCACAGTCGGCC 196 ************************************************************ consensus_14268#0 ACTGCTGCTGATGATAACGCTGGGCAAGATACTGCTGATCCCACTGTGGCATCAAGGAAC 540 consensus_14268#1 ACTGCTGCTGATGATAACGCTGGGCAAGATACTGCTGATCCCACTGTGGCATCAAGGAAC 256 ************************************************************ consensus_14268#0 GACCTGCACAACACTGAGAACAATAAAGTCTCTGTTGTCCTGTCAACCTTTTCTCAGACA 600 consensus_14268#1 GACCTGCACAACACTGAGAACAATAAAGTCTCTGTTGTCCTGTCAACCTTTTCTCAGACA 316 ************************************************************ consensus_14268#0 TACTCGGTGTGAATCTAGCTCCATGGAGAGGATATGGAAGACTTGAGCTTCTGAGAGCTA 660 consensus_14268#1 TACTCGGTGTGAATCTAGCTCCATGGAGAGGATATGGAAGACTTGAGCTTCTGAGAGCTA 376 ************************************************************ consensus_14268#0 GCTGTCAGTAATTTGTGAAGTAAAGTAGCTGTTATCCTTTTGTGAAGTTTTCCCCACTGT 720 consensus_14268#1 GCTGTCAGTAATTTGTGAAGTAAAGTAGCTGTTATCCTTTTGTGAAGTTTTCCCCACTGT 436 ************************************************************ consensus_14268#0 TATGGAATGATGTCTAGATCGTAATATGCCGTTGAGCAGACATGAGTTTGACATCTGGAG 780 consensus_14268#1 TATGGAATGATGTCTAGATCGTAATATGCCGTTGAGCAGACATGAGTTTGACATCTGGAG 496 ************************************************************ consensus_14268#0 TGTATATTTGTTGCTGCAAACTGCAAAGTGAACACTCCCATGTATATTCCATACCTTTCG 840 consensus_14268#1 TGTATATTTGTTGCTGCAAACTGCAAAGTGAACACTCCCATGTATATTCCATACCTTTCG 556 ************************************************************ consensus_14268#0 TTCCCATGCATGTATATAAGGCATTACTGCTACCGTTGTATGGTATACCCGCTGCATGTG 900 consensus_14268#1 TTCCCATGCATGTATATAAGGCATTACTGCTACCGTTGTATGGTATACCCGCTGCATGTG 616 ************************************************************ consensus_14268#0 TTTGCATTTCAAAAAA--------------AAAAAAAAAAAAAAAAG------------- 933 consensus_14268#1 TTTGCATTTCATCGATTCTTCTCCTGGTCTATTGTCGCTGAAAAATGCTTTGTCGTCCAA 676 *********** * * ***** * consensus_14268#0 --- consensus_14268#1 AAA 679 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||