These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14274#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1552 fasta sequence [GCCACGCGGCCACTCGCTGCCTCCACTCTTCTTCCTCCCCTCCGCTTCTGCTCCCCTCTCAAAACCCCACCTCCCTCTCCTCCTCCTCCTCACCTCCGCCGCCTCCAAACCCTAACCCGCGCGCTCGCCTCCTCCTCCTCAGCCATGGCGTCGCCGCCCGCGAAGAAGGTGCTGGTGCCGATCGCGAGCGGGACGGAGCCGATGGAGGCCGTCATCACCGTCGACGTGCTCCGCCGCGCCGGGGCCGACGTCTCCGTCGCCTCCGTCGACCCCGGCTCCGCGCAGGTCGGCGGAGCCTG-GGGCGTCAAGCTGGCCGCGGACGCGCTGCTCGACGACCTCGCCGACGCCGAATTCGACCTCATCTCGCTCCCGGGAGGTATGCCAGGGTCTTCCAATCTTAGAGACTGCAAACTTCTGGAGAACATGGTTAAAAAGCACGCAGGAAAGGGCAAACTTTATGCTGCAATATGTGCTGCACCAGCTGTCGCTCTAGGATCATGGGGTTTGCTGAATGGATTGAAGGCAACTTGTTATCCTTCATTCATGGATAAACTTCCTTCAGAGGTCAATGCTGTAGAATCGAGGGTGCAGATTGATGGGAACTGTGTGACCAGTCGAGGACCAGGAACGGCCATGGAGTATTCTGTTGTTTTGGTCGAACAATTATATGGCAAAGAAAAAGCTGATGAAGTTGCTGGTCCAATGGTCATGCGCCCCCAGCATGGTGTGGAGTTCTCATTGAAAGAGTTGAATTCAACTAGTTGGAATGTTGGTGAAACACCTCAGATTCTTGTACCAATTGCTAATGGGACAGAGGAGATGGAAGCAACTATGATAATCGACATCCTCAGAAGGGCGAAAGCAAATGTTGTCGTTGCGTCCTTGGAGGAAACTTTGGAGATTGTTGCATCCAGGAAAGTGAAGATGGTTGCTGATGTTCTGTTGGATGATGCTCTTAAGCAGCAATATGATCTCATTTTGTTACCAGGTGGTCTTGGTGGTGCCCAAGCATATGCAAAGTCAGATAAACTGATTGGTCTGATCAAGAAGCAAGCTGAGGC--AAACA-AGCTATATGGA-GCTATATGTGCCTC-GCCAGCAATCGCCCTTGAACCACATGGCCTG-CTGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCA-TGGTCTTCATGTGAGTTGTGTTGTTACATACTACG-TGTAAGACAACACCATAGTCAGACTCTGAATATGAGGCATCCTTTTGCTCGTAGCTGGTGTGGTGGAAAGCACTTCGTAATCCTTTTTTTTGGCTTTCTCTTCCACAATAACACGACGTCTTGTTATGTGTACAACCGTACAAATGCAATAAAAAGAGATGGATATTGCAAAAAAAAAATGGGGGGGGGGGGTATATGATGA] [+] EMBL CB630940 [GCCACGCGGCCACTCGCTGCCTCCACTCTTCTTCCTCCCCTCCGCTTCTGCTCCCCTCTCAAAACCCCACCTCCCTCTCCTCCTCCTCCTCACCTCCGCCGCCTCCAAACCCTAACCCGCGCGCTCGCCTCCTCCTCCTCAGCCATGGCGTCGCCGCCCGCGAAGAAGGTGCTGGTGCCGATCGCGAGCGGGACGGAGCCGATGGAGGCCGTCATCACCGTCGACGTGCTCCGCCGCGCCGGGGCCGACGTCTCCGTCGCCTCCGTCGACCCCGGCTCCGCGCAGGTCGGCGGAGCCTG GGGCGTCAAGCTGGCCGCGGACGCGCTGCTCGACGACCTCGCCGACGCCGAATTCGACCTCATCTCGCTCCCGGGAGGTATGCCAGGGTCTTCCAATCTTAGAGACTGCAAACTTCTGGAGAACATGGTTAAAAAGCACGCAGGAAAGGGCAAACTTTATGCTGCAATATGTGCTGCACCAGCTGTCGCTCTAGGATCATGGGGTTTGCTGAATGGATTGAAGGCAACTTGTTATCCTTCATTCATGGATAAACTTCCTTCAGAGGTCAATACTGTAGAATCGAGGGTGCAGATTGATGGGAACTGTGTGACCAGTCGAGGACCAGGAACGGCCATGGAGTATTCTGTTGTTTTGGTCGAACAATTATATGGCAAAGAAAAAGCTGATGAAGTTGCTGGTCCAATGGTCATGCGGCCCCAGCATGGTGTGGAGTTCTCATTGAAAGAGTTGAATTCAACTAGTTGGGATGTTGGg ] [+] EMBL CB647955 [ ACTCTTCTTCCTCCCCTCCGCTTCTGCTCCCCTCTCAAAACCCCACCTCCCTCTCCTCCTCCTCCTCACCTCCGCCGCCTCCAAACCCTAACCCGCGCGCTCGCCTCCTCCTCCTCAGACATGGCGTCGCCGCCCGCGAAGAAGGTGCTGGTGCCGATCGCGAGCGGGACGGAGCCGATGGAGGCCGTCATCACCGTCGACGTGCTCCGCCGCGCCGGGGCCGACGTCTCCGTCGCCTCCGTCGACCCCGGCTCCGCGCAGGTCGGCGGAGCCTG GGGCGTCAAGCTGGCCGCGGACGCGCTGCTCGACGACCTCGCCGACGCCGAATTCGACCTCATCTCGCTCCCGGGAGGTATGCCAGGGTCTTCCAATCTTAGAGACTGCAAACTTCTGGAGAACATGGTTAAAAAGCACGCAGGAAAGGGCAAACTTTATGCTGCAATATGTGCTGCACCAGCTGTCGCTCTAGGATCATGGGGTTTGCTGAATGGATTGAAGGCAACTTGTTATCCTTCATTCATGGATAAACTTCCTTCAGAGGTCAATGCTGTAGAATCGAGGGTGCAGATTGATGGGAACTGTGTGACCAGTCGAGGACCAGGAACGGCCATGGAGTATTCTGTTGTTTTGGTCGAACAATTATATGGCAAAGAAAAAGCTGATGAAGTTGCTGGTCCAATGGTCATGCGCCCCCAGCATGGTGAGGAGTTCTCATTGAAAGAGTTGAATTCAACTAGTTGGAATGTTGGTGAAACACCTCAGATTCTTGTACCAATTG ] [+] EMBL AK072614 [ TCCTCCCCTCCGCTTCTGCTCCCCTCTCAAAACCCCACCTCCCTCTCCTCCTCCTCCTCACCTCCGCCGCCTCCAAACCCTAACCCGCGCGCTCGCCTCCTCCTCCTCAGCCATGGCGTCGCCGCCCGCGAAGAAGGTGCTGGTGCCGATCGCGAGCGGGACGGAGCCGATGGAGGCCGTCATCACCGTCGACGTGCTCCGCCGCGCCGGGGCCGACGTCTCCGTCGCCTCCGTCGACCCCGGCTCCGCGCAGGTCGGCGGAGCCTG GGGCGTCAAGCTGGCCGCGGACGCGCTGCTCGACGACCTCGCCGACGCCGAATTCGACCTCATCTCGCTCCCGGGAGGTATGCCAGGGTCTTCCAATCTTAGAGACTGCAAACTTCTGGAGAACATGGTTAAAAAGCACGCAGGAAAGGGCAAACTTTATGCTGCAATATGTGCTGCACCAGCTGTCGCTCTAGGATCATGGGGTTTGCTGAATGGATTGAAGGCAACTTGTTATCCTTCATTCATGGATAAACTTCCTTCAGAGGTCAATGCTGTAGAATCGAGGGTGCAGATTGATGGGAACTGTGTGACCAGTCGAGGACCAGGAACGGCCATGGAGTATTCTGTTGTTTTGGTCGAACAATTATATGGCAAAGAAAAAGCTGATGAAGTTGCTGGTCCAATGGTCATGCGCCCCCAGCATGGTGTGGAGTTCTCATTGAAAGAGTTGAATTCAACTAGTTGGAATGTTGGTGAAACACCTCAGATTCTTGTACCAATTGCTAATGGGACAGAGGAGATGGAAGCAACTATGATAATCGACATCCTCAGAAGGGCGAAAGCAAATGTTGTCGTTGCGTCCTTGGAGGAAACTTTGGAGATTGTTGCATCCAGGAAAGTGAAGATGGTTGCTGATGTTCTGTTGGATGATGCTCTTAAGCAGCAATATGATCTCATTTTGTTACCAGGTGGTCTTGGTGGTGCCCAAGCATATGCAAAGTCAGATAAACTGATTGGTCTGATCAAGAAGCAAGCTGAGGC AAACA AGCTATATGGA GCTATATGTGCCTC GCCAGCAATCGCCCTTGAACCACATGGCCTG CTGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCA TGGTCTTCATGTGAGTTGTGTTGTTACATACTACG TGTAAGACAACACCATAGTCAGACTCTGAATATGAGGCATCCTTTTGCTCGTAGCTGGTGTGGTGGAAAGCACTTCGTAATCCTTTTTTTTGGCTTTCTCTTCCACAATAACACGACGTCTTGTTATGTGTACAACCGTACAAATGCAATAAAAAGAG ] [+] EMBL AK105855 [ CCTCCCCTCCGCTTCTGCTCCCCTCTCAAAACCCCACCTCCCTCTCCTCCTCCTCCTCACCTCCGCCGCCTCCAAACCCTAACCCGCGCGCTCGCCTCCTCCTCCTCAGCCATGGCGTCGCCGCCCGCGAAGAAGGTGCTGGTGCCGATCGCGAGCGGGACGGAGCCGATGGAGGCCGTCATCACCGTCGACGTGCTCCGCCGCGCCGGGGCCGACGTCTCCGTCGCCTCCGTCGACCCCGGCTCCGCGCAGGTCGGCGGAGCCTG GGGCGTCAAGCTGGCCGCGGACGCGCTGCTCGACGACCTCGCCGACGCCGAATTCGACCTCATCTCGCTCCCGGGAGGTATGCCAGGGTCTTCCAATCTTAGAGACTGCAAACTTCTGGAGAACATGGTTAAAAAGCACGCAGGAAAGGGCAAACTTTATGCTGCAATATGTGCTGCACCAGCTGTCGCTCTAGGATCATGGGGTTTGCTGAATGGATTGAAGGCAACTTGTTATCCTTCATTCATGGATAAACTTCCTTCAGAGGTCAATGCTGTAGAATCGAGGGTGCAGATTGATGGGAACTGTGTGACCAGTCGAGGACCAGGAACGGCCATGGAGTATTCTGTTGTTTTGGTCGAACAATTATATGGCAAAGAAAAAGCTGATGAAGTTGCTGGTCCAATGGTCATGCGCCCCCAGCATGGTGTGGAGTTCTCATTGAAAGAGTTGAATTCAACTAGTTGGAATGTTGGTGAAACACCTCAGATTCTTGTACCAATTGCTAATGGGACAGAGGAGATGGAAGCAACTATGATAATCGACATCCTCAGAAGGGCGAAAGCAAATGTTGTCGTTGCGTCCTTGGAGGAAACTTTGGAGATTGTTGCATCCAGGAAAGTGAAGATGGTTGCTGATGTTCTGTTGGATGATGCTCTTAAGCAGCAATATGATCTCATTTTGTTACCAGGTGGTCTTGGTGGTGCCCAAGCATATGCAAAGTCAGATAAACTGATTGGTCTGATCAAGAAGCAAGCTGAGGC AAACA AGCTATATGGA GCTATATGTGCCTC GCCAGCAATCGCCCTTGAACCACATGGCCTG CTGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCA TGGTCTTCATGTGAGTTGTGTTGTTACATACTACG TGTAAGACAACACCATAGTCAGACTCTGAATATGAGGCATCCTTTTGCTCGTAGCTGGTGTGGTGGAAAGCACTTCGTAATCCTTTTTTTTGGCTTTCTCTTCCACAATAACACGACGTCTTGTTATGTGTACAACCGTACAAATGCAATAAAAAGAGA ] [+] EMBL OS14372A [ ACCTCCCTCTCCTCCTCCTCCTCACCTCCGCCGCCTCCAAACCCTAACCCGCGCGCTCGCCTCCTCCTCCTCAGCCATGGCGTCGCCGCCCGCGAAGAAGGTGCTGGTGCCGATCGCGAGCGGGACGGAGCCGATGGAGGCCGTCATCACCGTCGACGTGCTCCGCCGCGCCGGGGCCGACGTCTCCGTCGCNTCCGTCGANCCCGGCTCCGCGCAGGTCGGCGGAG CTGTGGGCGTCAAGCTGGNCGCGTACG GCTGCTCGACGACCTCGACGACG ] [+] EMBL AK060016 [ ATGTGCTGCACCAGCTGTCGCTCTAGGATCATGGGGTTTGCTGAATGGATTGAAGGCAACTTGTTATCCTTCATTCATGGATAAACTTCCTTCAGAGGTCAATGCTGTAGAATCGAGGGTGCAGATTGATGGGAACTGTGTGACCAGTCGAGGACCAGGAACGGCCATGGAGTATTCTGTTGTTTTGGTCGAACAATTATATGGCAAAGAAAAAGCTGATGAAGTTGCTGGTCCAATGGTCATGCGCCCCCAGCATGGTGTGGAGTTCTCATTGAAAGAGTTGAATTCAACTAGTTGGAATGTTGGTGAAACACCTCAGATTCTTGTACCAATTGCTAATGGGACAGAGGAGATGGAAGCAACTATGATAATCGACATCCTCAGAAGGGCGAAAGCAAATGTTGTCGTTGCGTCCTTGGAGGAAACTTTGGAGATTGTTGCATCCAGGAAAGTGAAGATGGTTGCTGATGTTCTGTTGGATGATGCTCTTAAGCAGCAATATGATCTCATTTTGTTACCAGGTGGTCTTGGTGGTGCCCAAGCATATGCAAAGTCAGATAAACTGATTGGTCTGATCAAGAAGCAAGCTGAGGC AAACA AGCTATATGGA GCTATATGTGCCTC GCCAGCAATCGCCCTTGAACCACATGGCCTG CTGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCA TGGTCTTCATGTGAGTTGTGTTGTTACATACTACG TGTAAGACAACACCATAGTCAGACTCTGAATATGAGGCATCCTTTTGCTCGTAGCTGGTGTGGTGGAAAGCACTTCGTAATCCTTTTTTTTGGCTTTCTCTTCCACAATAACACGACGTCTTGTTATGTGTACAACCGTACAAATGCAATAAAAAGAGATGGATATTGCACCTTTGGGTTGGGGGGGGGGGGTATATGATGA] [-] EMBL CB630941 [ TGTGACCAGTCGAGGACCAGGAACGGCCATGGAGTATTCTGTTGTTTTGGTCGAACAATTATATGGCAAAGAAAAAGCTGATGAAGTTGCTGGTCCAATGGTCATGCGGCCCCAGCATGGTGTGGAGTTCTCATTGAAAGAGTTGAATTCAACTAGTTGGAATGTTGGTGAAACACCTCAGATTCTTGTACCAATTGCTAATGGGACAGAGGAGATGGAAGCAACTATGATAATCGACATCCTCAGAAGGGCGAAAGCAAATGTTGTCGTTGCGTCCTTGGAGGAAACTTTGGAGATTGTTGCATCCAGGAAAGTGAAGATGGTTGCTGATGTTCTGTTGGATGATGCTCTTAAGCAGCAATATGATCTCATTTTGTTACCAGGTGGTCTTGGTGGTGCCCAAGCATATGCAAAGTCAGATAAACTGATTGGTCTGATCAAGAAGCAAGCTGAGGC AAACA AGCTATATGGA GCTATATGTGCCTC GCCAGCAATCGCCCTTGAACCACATGGCCTG CTGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCA TGGTCTTCATGTGAGTTGTGTTGTTACATACTACG TGTAAGACAACACCATAGTCAGACTCTGAATATGAGGCATCCTTTTGCTCG ] [+] EMBL CA767239 [ ACGGCCATGGAGTATTCTGTTGTTTTGGTCGAACAATTATATGGCAAAGAAAAAGCTGATGAAGTTGCTGGTCCAATGGTCATGCGGCCCCAGCATGGTGTGGAGTTCTCATTGAAAGAGTTGAATTCAACTAGTTGGAATGTTGGTGAAACACCTCAGATTCTTGTACCAATTGCTAATGGGACAGAGGAGATGGAAGCAACTATGATAATCGACATCCTCAGAAGGGCGGAAGCAAATGTTGTCGTTGCGTCCTTGGAGGAAACTTTGGAGATTGTTGCATCCAGGAAAGTGAAGATGGTTGCTGATGTTCTGTTGGATGATGCTCTTAAGCAGCAATATGATCTCATTTTGTTACCAGGTGGTCTTGGTGGTGCCCAGGCATATGCAAAGTCAGATAAACTGATTGGTCTGATCAAGAAGCAAGCTGAGGC AAACA AGCTATATGGA GCTATATGTGCCTC GCCAGCAATCGCCCTTGAACCACATGGCCTG CTGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCA TGGTCTTCATGTGAGNTGNGNTGGTACATACTACG NGTAAGACAACACCATAGTCAGACTCTGAATATGAGGCATNCTTTT ] [-] EMBL CB647956 [ TTGGTGAAACACCTCAGATTCTTGTACCAATTGCTAATGGGACAGAGGAGATGGAAGCAACTATGATAATCGACATCCTCAGAAGGGCGAAAGCAAATGTTGTCGTTGCGTCCTTGGAGGAAACTTTGGAGATTGTTGCATCCAGGAAAGTGAAGATGGTTGCTGATGTTCTGTTGGATGATGCTCTTAAGCAGCAATATGATCTCATTTTGTTACCAGGTGGTCTTGGTGGTGCCCAAGCATATGCAAAGTCAGATAAACTGATTGGTCTGATCAAGAAGCAAGCTGAGGC AAACA AGCTATATGGA GCTATATGTGCCTC GCCAGCAATCGCCCTTGAACCACATGGCCTG CTGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCA TGGTCTTCATGTGAGTTGTGTTGTTACATACTACG TGTAAGACAACACCATAGTCAGACTCTGAATATGAGGCATCCTTTTGCTCGTAGCTGGTGTGGTGGAAAGCACTTCGTAATCCTTTTTTTTGGCTTTCTCTTCCACAATAACACGACGTCTTGTTATGTGTACAACCGTACAAATGCAATAAAAAGAGATGGATATTG ] [+] EMBL BM421607 [ cnTGATCAAGAAGCAAGCTGAGGCCGAAACANAGCTATATGGATGCTATATGTGCCTCNGCCAGC ATCGCCCTTGAACCACATGGCCTGCCTGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCCAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCCAAACCACTGGTCTTCATGTGAGTTGTGTTGTTACATACTACGCTGTAAGACAACACCATAGTCAGACTCTGAATATGAGGCATCCTTTTGCTCGTAGCTGGTGTGGTGGAAAGCACTTCGTAATCCTTTTTTTTGGCTTTCTCTTCCACAATAAC CGACGTCTTGTTATGTGTACAACCGTAC AATCCAATAACAAGAGATGGATATTCCAAAAAAAAAA ] [+] EMBL BM419584 [ CA AGCTATATGGA GCTATATGTGCCTC GCCAGCAATCGCCCTTGAACCACATGGCCTG CTGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCA TGGTCTTCATGTGAGTTGTGTTGTTACATACTACG TGTAAGAC ACACCATAGTCAGACTCTGAATATGAGGCATCCTTTTGCTCGTAGCTGGTGTGGTGGAAAGCACTTCGTAATCCTTTTTTTTGGCTTTCTCTTCCACAATAACACGACGTCTTGTTATGTGTACAACCGTACAAATGCAATAAAAAGAGATGGATATTGCAAAAAAAAAA ] consensusID : consensus_14274#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 731 fasta sequence [GACGAGACAAGGGGGAAGGGCGAAAGCAAATGTTGTCGTTGCGTCCTTGGAGGAAACTTTGGAGATTGTTGCATCCAGGAAAGTGAAGATGGTTGCTGATGTTCTGTTGGATGATGCTCTTAAGCAGCAATATGATCTCATTTTGTTACCAGGTGGTCTTGGTGGTGCCCAAGCATATGCAAAGTCAGATAAACTGATTGGTCTGATCAAGAAGCAAGCTGAGGCAAACAAGCTATATGGAGCTATATGTGCCTCGCCAGCAATCGCCCTTGAACCACATGGCCTGCTGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCATGGTCTTCATGTGAGTTGTGTTGTTACATACTACGTGTAAGACAACACCATAGTCAGACTCTGAATATGAGGCATCCTTTT-GCTCGTAGC-TGGTGTGGTGGAAAGCACTTCGTAATCC--TTTTTTTT-GGCTTTCTCTTCCACAATAAC-ACGACGTCTTGTTATGTGTACAACCGTACAAATGCAATAAAAAAGAGATGGATATTGCNNNNNNNNNNNNNNNNANANNNNGNNNNNNNNNNNNNNGNNNNNNNN] [+] EMBL CA767429 [GACGAGACAAGGGGGAAGGGCGAAAGCAAATGTTGTCGTTGCGTCCTTGGAGGAAACTTTGGAGATTGTTGCATCCAGGAAAGTGAAGATGGTTGCTGATGTTCTGTTGGATGATGCTCTTAAGCAGCAATATGATCTCATTTTGTTACCAGGTGGTCTTGGTGGTGCCCAAGCATATGCAAAGTCAGATAAACTGATTGGTCTGATCAAGAAGCAAGCTGAGGCAAACAAGCTATATGGAGCTATATGTGCCTCGCCAGCAATCGCCCTTGAACCACATGGCCTGCTGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCATGGTCTTCATGTGAGTTGTGTTGTTACATACTACGTGTAAGACAACACCATAGTCAGACTCTGAATATGAGGCATCCTTTT GCTCGTAGC TGGTGTGGTGGAAAGCACTTCGTAATCC TTTTTTTT GGCTTTCTCTTCCACAATAAC ACGACGTCTTGTTATGTGTACAACCGTACAAATGCAATAAAAAAGAGATG ] [+] EMBL CA754279 [ GTCTGATCAAGAAGCAAGCTGAGGCAAACAAGCTATATGGAGCTATATGTGCCTCGCCAGCAATCGCCCTTGAACCACATGGCCTGCTGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCATGGTCTTCATGTGAGTTGTGTTGTTACATACTACGTGTAAGACAACACCATAGTCAGACTCTGAATATGAGGCATCCTTTT GCTCGTAGC TGGTGTGGTGGAAAGCACTTCGTAATCC TTTTTTTT GGCTTTCTCTTCCACAATAAC ACGACGTCTTGTTATGTGTACAACCGTACAAATGCAAT AAAAAGAGATGGATATTGCNNNNNNNNNNNNNNNNANANNNNGNNNNNNNNNNNNNNGNNNNNNNN] [+] EMBL D42820 [ TGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCATGGTCTTCATGTGAGTTGTGTTGTTACATACTACGTGTAAGACAACANCATAGTCAGACTCTGAATATGAGGCATCCTTTTGGCTCGTAGCTTGGTGTGGTGGAAAGCACTTCGTAATCCCTTTTTTTTTGGGCTTTCTCTTCCACAATTACNACGCNGTC ] consensusID : consensus_14274#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence [TTGTCCGTTGATGGCAACCTAATCCCCAGTCCAAGGTCCAGGCACATCCCNTGGAGTTCTCTTTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGNCCGTCGAGCTCGCCAAAACCNTGGTCTTCATGTGAGTTGTGTTGTTACATNTACGTGTAAGACAACNCCATAGTCAGACTCTGAATNTGNGGCATCCTTTTGCTCGTAGCTGGTNTGGTGGAAAGCATTCGTAATCCTTTTTTTTGGCTTTCTCTTCCNCAATAACACGACGTNTTGTTATGTGTNCAACCGTACAAATGCAATAAAAAGAGATGGNTATTGCAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANA] [+] EMBL AU031059 [TTGTCCGTTGATGGCAACCTAATCCCCAGTCCAAGGTCCAGGCACATCCCNTGGAGTTCTCTTTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGNCCGTCGAGCTCGCCAAAACCNTGGTCTTCATGTGAGTTGTGTTGTTACATNTACGTGTAAGACAACNCCATAGTCAGACTCTGAATNTGNGGCATCCTTTTGCTCGTAGCTGGTNTGGTGGAAAGCATTCGTAATCCTTTTTTTTGGCTTTCTCTTCCNCAATAACACGACGTNTTGTTATGTGTNCAACCGTACAAATGCAATAAAAAGAGATGGNTATTGCAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14274#0 GCCACGCGGCCACTCGCTGCCTCCACTCTTCTTCCTCCCCTCCGCTTCTGCTCCCCTCTC 60 consensus_14274#1 ------------------------------------------------------------ consensus_14274#2 ------------------------------------------------------------ consensus_14274#0 AAAACCCCACCTCCCTCTCCTCCTCCTCCTCACCTCCGCCGCCTCCAAACCCTAACCCGC 120 consensus_14274#1 ------------------------------------------------------------ consensus_14274#2 ------------------------------------------------------------ consensus_14274#0 GCGCTCGCCTCCTCCTCCTCAGCCATGGCGTCGCCGCCCGCGAAGAAGGTGCTGGTGCCG 180 consensus_14274#1 ------------------------------------------------------------ consensus_14274#2 ------------------------------------------------------------ consensus_14274#0 ATCGCGAGCGGGACGGAGCCGATGGAGGCCGTCATCACCGTCGACGTGCTCCGCCGCGCC 240 consensus_14274#1 ------------------------------------------------------------ consensus_14274#2 ------------------------------------------------------------ consensus_14274#0 GGGGCCGACGTCTCCGTCGCCTCCGTCGACCCCGGCTCCGCGCAGGTCGGCGGAGCCTGG 300 consensus_14274#1 ------------------------------------------------------------ consensus_14274#2 ------------------------------------------------------------ consensus_14274#0 GGCGTCAAGCTGGCCGCGGACGCGCTGCTCGACGACCTCGCCGACGCCGAATTCGACCTC 360 consensus_14274#1 ------------------------------------------------------------ consensus_14274#2 ------------------------------------------------------------ consensus_14274#0 ATCTCGCTCCCGGGAGGTATGCCAGGGTCTTCCAATCTTAGAGACTGCAAACTTCTGGAG 420 consensus_14274#1 ------------------------------------------------------------ consensus_14274#2 ------------------------------------------------------------ consensus_14274#0 AACATGGTTAAAAAGCACGCAGGAAAGGGCAAACTTTATGCTGCAATATGTGCTGCACCA 480 consensus_14274#1 ------------------------------------------------------------ consensus_14274#2 ------------------------------------------------------------ consensus_14274#0 GCTGTCGCTCTAGGATCATGGGGTTTGCTGAATGGATTGAAGGCAACTTGTTATCCTTCA 540 consensus_14274#1 ------------------------------------------------------------ consensus_14274#2 ------------------------------------------------------------ consensus_14274#0 TTCATGGATAAACTTCCTTCAGAGGTCAATGCTGTAGAATCGAGGGTGCAGATTGATGGG 600 consensus_14274#1 ------------------------------------------------------------ consensus_14274#2 ------------------------------------------------------------ consensus_14274#0 AACTGTGTGACCAGTCGAGGACCAGGAACGGCCATGGAGTATTCTGTTGTTTTGGTCGAA 660 consensus_14274#1 ------------------------------------------------------------ consensus_14274#2 ------------------------------------------------------------ consensus_14274#0 CAATTATATGGCAAAGAAAAAGCTGATGAAGTTGCTGGTCCAATGGTCATGCGCCCCCAG 720 consensus_14274#1 ------------------------------------------------------------ consensus_14274#2 ------------------------------------------------------------ consensus_14274#0 CATGGTGTGGAGTTCTCATTGAAAGAGTTGAATTCAACTAGTTGGAATGTTGGTGAAACA 780 consensus_14274#1 ------------------------------------------------------------ consensus_14274#2 ------------------------------------------------------------ consensus_14274#0 CCTCAGATTCTTGTACCAATTGCTAATGGGACAGAGGAGATGGAAGCAACTATGATAATC 840 consensus_14274#1 -----------------------------------------------------GACGA-- 5 consensus_14274#2 ------------------------------------------------------------ consensus_14274#0 GACATCCTCAGAAGGGCGAAAGCAAATGTTGTCGTTGCGTCCTTGGAGGAAACTTTGGAG 900 consensus_14274#1 GACAAGGG-GGAAGGGCGAAAGCAAATGTTGTCGTTGCGTCCTTGGAGGAAACTTTGGAG 64 consensus_14274#2 ------------------------------------------------------------ consensus_14274#0 ATTGTTGCATCCAGGAAAGTGAAGATGGTTGCTGATGTTCTGTTGGATGATGCTCTTAAG 960 consensus_14274#1 ATTGTTGCATCCAGGAAAGTGAAGATGGTTGCTGATGTTCTGTTGGATGATGCTCTTAAG 124 consensus_14274#2 ------------------------------------------------------------ consensus_14274#0 CAGCAATATGATCTCATTTTGTTACCAGGTGGTCTTGGTGGTGCCCAAGCATATGCAAAG 1020 consensus_14274#1 CAGCAATATGATCTCATTTTGTTACCAGGTGGTCTTGGTGGTGCCCAAGCATATGCAAAG 184 consensus_14274#2 ------------------------------------------------------------ consensus_14274#0 TCAGATAAACTGATTGGTCTGATCAAGAAGCAAGCTGAGGCAAACAAGCTATATGGAGCT 1080 consensus_14274#1 TCAGATAAACTGATTGGTCTGATCAAGAAGCAAGCTGAGGCAAACAAGCTATATGGAGCT 244 consensus_14274#2 ------------------------------------------------------------ consensus_14274#0 ATATGTGCCTCGCCAGCAATCGCCCTTGAACCACATGGCCTGCTGAAGGGAAAGAAGGCT 1140 consensus_14274#1 ATATGTGCCTCGCCAGCAATCGCCCTTGAACCACATGGCCTGCTGAAGGGAAAGAAGGCT 304 consensus_14274#2 ------------------------------------------------------------ consensus_14274#0 ACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTT 1200 consensus_14274#1 ACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTT 364 consensus_14274#2 ----------------------------------------------------------TT 2 ** consensus_14274#0 GTC-GTTGATGGCAACCTAATCACCAG-CCAAGGTCCAGGCACATCC-ATGGAGTTCTCT 1257 consensus_14274#1 GTC-GTTGATGGCAACCTAATCACCAG-CCAAGGTCCAGGCACATCC-ATGGAGTTCTCT 421 consensus_14274#2 GTCCGTTGATGGCAACCTAATCCCCAGTCCAAGGTCCAGGCACATCCCNTGGAGTTCTCT 62 *** ****************** **** ******************* *********** consensus_14274#0 CTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCATG 1317 consensus_14274#1 CTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCATG 481 consensus_14274#2 TTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGNCCGTCGAGCTCGCCAAAACCNTG 122 *********************************** ******************** ** consensus_14274#0 GTCTTCATGTGAGTTGTGTTGTTACATACTACGTGTAAGACAACACCATAGTCAGACTCT 1377 consensus_14274#1 GTCTTCATGTGAGTTGTGTTGTTACATACTACGTGTAAGACAACACCATAGTCAGACTCT 541 consensus_14274#2 GTCTTCATGTGAGTTGTGTTGTTACATN-TACGTGTAAGACAACNCCATAGTCAGACTCT 181 *************************** *************** *************** consensus_14274#0 GAATATGAGGCATCCTTTTGCTCGTAGCTGGTGTGGTGGAAAGCACTTCGTAATCCTTTT 1437 consensus_14274#1 GAATATGAGGCATCCTTTTGCTCGTAGCTGGTGTGGTGGAAAGCACTTCGTAATCCTTTT 601 consensus_14274#2 GAATNTGNGGCATCCTTTTGCTCGTAGCTGGTNTGGTGGAAAGCA-TTCGTAATCCTTTT 240 **** ** ************************ ************ ************** consensus_14274#0 TTTTGGCTTTCTCTTCCACAATAACACGACGTCTTGTTATGTGTACAACCGTACAAATGC 1497 consensus_14274#1 TTTTGGCTTTCTCTTCCACAATAACACGACGTCTTGTTATGTGTACAACCGTACAAATGC 661 consensus_14274#2 TTTTGGCTTTCTCTTCCNCAATAACACGACGTNTTGTTATGTGTNCAACCGTACAAATGC 300 ***************** ************** *********** *************** consensus_14274#0 AATAAAAA-GAGATGGATATTGCAAAAAAAAAATGGGGGGGGGGGGTATATGATGA---- 1552 consensus_14274#1 AATAAAAAAGAGATGGATATTGCNNNNNNNNNNNNNNNNANANNNNGNNNNNNNNNNNNN 721 consensus_14274#2 AATAAAAA-GAGATGGNTATTGCAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAA 359 ******** ******* ****** consensus_14274#0 --------------- consensus_14274#1 NGNNNNNNNN----- 731 consensus_14274#2 AAAAAAAAAAAAANA 374 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||