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Oryza sativa
cluster # 14275 cluster # 14275       Sequences # 15       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14275#0 length = 1475 sequences # 12  
consensus_14275#1 length = 554 sequences # 3  

consensusID : consensus_14275#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1475
fasta sequence
                              [CGGGGCGGCGGCTCGGCTCCCCTGATCTCCCTCCCCTGCGCCGCTGCGCGGTATGGACCTCCAGGATCCAGCCGCGGACGCCGTCGCGGCCGAGCCACTCACCGTCGCCGAGACCGACGACCAGCCGCCGCCGCCAGCGCCGCCTCTGGAGGCGGAGGGTGTTGTCGTCGCGGAGGAAGACCCGCTGCCGCATCCGCCCCTTGAGGTGGTGGAGGAGGATGTGGCCCCCGTCGTCGCAGAAGCCGGCGCCGCTGCCGTACCTATGGAGCCCTCCGAGGCTGGCGCGGGTGGTGTCGTGCTCACCGACAAGCTCTGCGACCGGATCGTCAAACAGGTGGAGTACTACTTCAGCGATGAGAATCTTCCTACGGATGAGTTCCTGATTAAATTCGTGAAGAAGAACAAGCAGGGGTTTGTTCCTATTGGAGTTATTGCCTCATTCAGAAGAATGAAGAAACTCAGTCAGGATCTCTCTATAATTGAAGCTGCACTTAGGACATCATCTAAGCTGGTCGTGAGTCCAGATGGGAAAAGGGTCAGGAGGTTACATCCATTGCCAAATAATGAATTGAATGA-TGTTAAGAAAAGGATAGT-CGTGGT-GGAAAATCTGCCTTCTGATTTCTCCATGGAAAGCATACATGCGAA-ATTTGAAACAGTTGGGAAAATTGCGAAGATAACCATTCATGATCAACATTCAGTGGGAGAATCTGCAACAATTAAGAACCATGACATCATGCTAAGT-AACAAGGTGCATGCTCTTGTTGAATATGAAACAGCAGAGGCAGCTGAGAAAGCTGCTATC-ACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAGGCTGGCTAAGCGAACCGTAGGATCAGGAAAGCATAACCAGTCTTCAAAAGAAAATCAGGCCATCCAGGGCCAGCCTTCAAAAGTAGAGCAGCAGATGGTATCAGAAAAGAATGGTGGTACTGATTCAGTGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAGGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGT-GAACAAGCC-TATTCCTGG-ACCGAGAATGCCGG-ATGGGACAA-GGGGCTTTACAATGGGGCGTGGTAAATCTCCTACATTCCAGAAAGGGGATAATGCTGAAGAATAGTGCTTTTGTCCCAAAAAGCCTGGTAACAATCTAACCGCGTGAAAAACATAATTCTGCTGTTATGCT-A-TAAGCTGTCTTGCTTCGTG-T-AAGAA-CGTA-GGGACATGTCACT-GA-TATA-G-AAAGGCTCTT-ATTTTTTA--AAAAAAATTTTCTGAATTAACTGGNGCTTTAGTAGGNCT-GGT--AAAATTTAACCTCATGANAACCATTGGTA]

[+] EMBL CB648687             [CGGGGCGGCGGCTCGGCTCCCCTGATCTCCCTCCCCTGCGCCGCTGCGCGGTATGGACCTCCAGGATCCAGCCGCGGACGCCGTCGCGGCCGAGCCACTCACCGTCGCCGAGACCGACGACCAGCCGCCGCCGCCAGCGCCGCCTCTGGAGGCGGAGGGTGTTGTCGTCGCGGAGGAAGACCCGCTGCCGCATCCGCCCCTTGAGGTGGTGGAGGAGGATGTGGCCCCCGTCGTCGCAGAAGCCGGCGCCGCTGCCGTACCTATGGAGCCCTCCGAGGCTGGCGCGGGTGGTGTCGTGCTCACCGACAAGCTCTGCGACCGGATCGTCAAACAGGTGGAGTACTACTTCAGCGATGAGAATCTTCCTACGGATGAGTTCCTGATTAAATTCGTGAAGAAGAACAAGCAGGGGTTTGTTCCTATTGGAGTTATTGCCTCATTCAGAAGAATGAAGAAACTCAGTCAGGATCTCTCTATAATTGAAGCTGCACTTAGGACATCATCTAAGCTGGTCGTGAGTCCAGATGGGAAAAGGGTCAGGAGGTTACATCCATTGCCAAATAATGAATTGAATGA TGTTAAGAAAAGGATAGT CGTGGT GGAAAATCTGCCTTCTGATTTCTCCATGGAAAGCATACATGCGAA ATTTTGAACAGTTGGGAAAATTGCGAAGATAACCATTCATGATCAACATTCAGTGTGAGAATCTGCAACAATTAACAACCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL OSC0521              [                                                                                                                                                                                                                                             AGAAGCCGGCGCCGCTGCCGTACCTATGGAGCCCTCCGAGGCTGGCGCGGGTGGTGTCGTGCTCACCGACGAGCTCTGCGACCGGATCGTCAAACAGGTGGAGTACTACTTCAGCGATGAGAATCTTCCTACGGATGAGTTCCTGATTAAATTCGTGAAGAAGAACAAGCAGGGGTTTGTTCCTATTGGAGTTATTGCCTCATTCAGAAGAATGAAGAAACTCAGTCAGGATCTCTCTATAATTGAAGCTGCACTTAGGACATCATCTAAGCTGGTCGTGAGTCCAGATGGGAAAAGGGTCAGGAGGTTACATCCATTGCCAAATAATGAATTGAATGATTGTTAAGAAAAGGATAGTCCGTGGTGGGAAAATCTGCCTTCTGATTTCTCCATGGAAAGCATACATGCGGA ATTTGAAACAGTTNGGNAAATTGCGAga                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BE040374             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GCCTTCTGATTTCTCCATGGAAAGCATACATGCGAAGATTTGAAACAGTTGGGAAAATTGCGAAGATAACCATTCATGATCAACATTCAGTGGGAGAATCTGCAACAATTAAGAACCATGACATCATGCTAAGT AACAAGGTGCATGCTCTTGTTGAATATGAAACAGCAGAGGCAGCTGAGAAAGCTGCTATC ACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAGGCTGGCTAAGCGAACCGTAGGATCAGGAAAGCATAACCAGTCTTCAAAAGAAAATCAGGCCATCCAGGGCCAGCCTTCAAAAGTAGAGCAGCAGATGGTATCAGAAAAGAATGGTGGTACTGATTCAGTGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAGGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAANAGGTCGATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGT GAACAAGCC TATTCCTGG ACCGAGAATGCCAG ATGGGACAA GGGGCTTTACAATGGGGCGTGGTAAATCTCCTACATTCCAGAAAGGGGATAATGCTGAAGATTAGTGCTTTTGTCCC AAAAGCCTGGTAACAATCTAACCGCTTG AAAACATTATTCTGGTGTAATGCT ATTAAGGNG CTGGCTTNGNGAG AAG A CNTA  GGACCTGTCACT GA TATA G AAAGGCT TT ATTTTTa                                                                             ]
[+] EMBL CF322971             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGATTTCTCCATGGAAAGCATACATGCGAA ATTTGAAACAGTTGGGAAAATTGCGAAGATAACCATTCATGATCAACATTCAGTGGGAGAATCTGCAACAATTAAGAACCATGACATCATGCTAAGT AACAAGGTGCATGCTCTTGTTGAATATGAAACAGCAGAGGCAGCTGAGAAAGCTGCTATC ACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAGGCTGGCTAAGCGAACCGTAGGATCAGGAAAGCATAACCAGTCTTCAAAAGAAAATCAGGCCATCCAGGGCCAGCCTTCAAAAGTAGAGCAGCAGATGGTATCAGAAAAGAATGGTGGTACTGATTCAGTGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAGGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGT G                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB645604             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGACATCATGCTAAGT AACAAGGTGCATGCTCTTGTTGAATATGAAACAGCAGAGGCAGCTGAGAAAGCTGCTATC ACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAGGCTGGCTAAGCGAACCGTAGGATCAGGAAAGCATAACCAGTCTTCAAAAGAAAATCAGGCCATCCAGGGCCAGCCTTCAAAAGTAGAGCAGCAGATGGTATCAGAAAAGAATGGTGGTACTGATTCAGTGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAGGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGT GAACAAGCC TATTCCTGG ACCGAGAATGCCGG ATGGGACAA GGGGCTTTACAATGGGGCGTGGTAAATCTCCTACATTCCAGAAAGGGGATAATGCTGAAGAATAGTGCTTTTGTCCCAAAAAGCCTGGTAACAATCTAACCGCGTGAAAAACATAATTCTGCTGTTATGCT A TAAGCTGTCTTGCTTCGTG T AAGAA CGTA GGGACATGTCACT GA TATA G AA                                                                                             ]
[+] EMBL AU088725             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              tnCATGCTAAGTNAACAAGGTGCATCCTCTTGTTGAATATGAAACAGCAGAGGCANCTGAGAAAGCTGCTATCNACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAGGCTGGCTAAGCGAACCGTAGGATCAGGAAAGCATAACCAGTCTTCAAAAGAAAATCAGGCCATCCAGGGCCAGCCTTCAAAAGTAGAGCAGCAGATGGTATCAGAAAAGAATGGTGGTACTGATTCAGTGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAGGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGT GAACAAGCC TATTCCTGG ACCGAGAATGCCGG ATGGGACAA GGGGCTTTACAATGGGGCGTGGTAAATCTCCTACATTCCAGAAAGGGGATAATGCTGAAGAATAGTGCTTTTGTCCCAAAAAGCCTGGTAACAATCTAACCGCGTGAAAAACATAATTCTGCTGTTATGCT A TAAGCTGTCTTGCTTCGTG T AAGAA CGTA GGGACATGTCACT GA TATA GAAAAGGCTCTT ATTTTTTA  AAAAAAA                                                                   ]
[-] EMBL CB648688             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AACAAGGTGCATGCTCTTGTTGAATATGAAACAGCAGAGGCAGCTGAGAAAGCTGCTATC ACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAGGCTGGCTAAGCGAACCGTAGGATCAGGAAAGCATAACCAGTCTTCAAAAGAAAATCAGGCCATCCAGGGCCAGCCTTCAAAAGTAGAGCAGCAGATGGTATCAGAAAAGAATGGTGGTACTGATTCAGTGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAGGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGT GAACAAGCC TATTCCTGG ACCGAGAATGCCGG ATGGGACAA GGGGCTTTACAATGGGGCGTGGTAAATCTCCTACATTCCAGAAAGGGGATAATGCTGAAGAATAGTGCTTTTGTCCCAAAAAGCCTGGTAACAATCTAACCGCGTGAAAAACATAATTCTGCTGTTATGCT A TAAGCTGTCTTGCTTCGTG T AAGAA CGTA GGGACATGTCACT GA TATA G AA                                                                                             ]
[-] EMBL CB669630             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TTGAATATGAAACAGCAGAGGCAGCTGAGAAAGCTGCTATC ACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAGGCTGGCTAAGCGAACCGTAGGATCAGGAAAGCATAACCAGTCTTCAAAAGAAAATCAGGCCATCCAGGGCCAGCCTTCAAAAGTAGAGCAGCAGATGGTATCAGAAAAGAATGGTGGTACTGATTCAGTGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAGGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGT GAACAAGCC TATTCCTGG ACCGAGAATGCCGG ATGGGACAA GGGGCTTTACAATGGGGCGTGGTAAATCTCCTACATTCCAGAAAGGGGATAATGCTGAAGAATAGTGCTTTTGTCCCAAAAAGCCTGGTAACAATCTAACCGCGTGAAAAACATAATTCTGCTGTTATGCT A TAAGCTGTCTTGCTTCGTG T AAGAA CGTA GGGACATGTCACT GA TATA G AA                                                                                             ]
[+] EMBL C98307               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CTGAGAAAGCTGCTATC ACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAGGCTGGCTAAGCGAACCGTA GATCAGGAAAGCATAACCAGTCTTCAAAAGAAAATCAGGCCATCCAGGGCCAGCCTTCAAAAGTAGAGCAGCAGATGGTATCAGAAAAGAATGGTGGTACTGATTCAGTGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAGGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGGAACAAGCCTTATTCCTGGNACCGAGAATGCCGGTATGGGACAAGGGGGCTTTACAATGGGGCGTGGTAAATCTCCTACATTCCAGAAAGGGGATAATGCTGAAGAATAGTGCTTTTGTCCCAAAAAGCCTGGTAACAATCTAACCGCGTGAAAAACATAATTCTGCTGTTATGCTAA TAAGCTGTCTTGCTTCGTG TAAAGAA CGTAGGGGACATGTCACT GATTATA GAAAAGGCTCTTAATTTNTTATGTAGTGTCTTTTCTGAATTAACTGGNGCTTTAGTAGGNCTGGGTAAAAAATTTAACCTCATGANAACCATTGGTA]
[-] EMBL CB678630             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGAGAAAGCTGCTATC ACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAGGCTGGCTAAGCGAACCGTAGGATCAGGAAAGCATAACCAGTCTTCAAAAGAAAATCAGGCCATCCAGGGCCAGCCTTCAAAAGTAGAGCAGCAGATGGTATCAGAAAAGAATGGTGGTACTGATTCAGTGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAGGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGT GAACAAGCC TATTCCTGG ACCGAGAATGCCGG ATGGGACAA GGGGCTTTACAATGGGGCGTGGTAAATCTCCTACATTCCAGAAAGGGGATAATGCTGAAGAATAGTGCTTTTGTCCCAAAAAGCCTGGTAACAATCTAACCGCGTGAAAAACATAATTCTGCTGTTATGCT A TAAGCTGTCTTGCTTCGTG T AAGAA CGTA GGGACATGTCACT GA TATA G AA                                                                                             ]
[+] EMBL AK105125             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AATTGGAGGACTGGAATGAAAGTCAGGCTGGCTAAGCGAACCGTAGGATCAGGAAAGCATAACCAGTCTTCAAAAGAAAATCAGGCCATCCAGGGCCAGCCTTCAAAAGTAGAGCAGCAGATGGTATCAGAAAAGAATGGTGGTACTGATTCAGTGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAGGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGT GAACAAGCC TATTCCTGG ACCGAGAATGCCGG ATGGGACAA GGGGCTTTACAATGGGGCGTGGTAAATCTCCTACATTCCAGAAAGGGGATAATGCTGAAGAATAGTGCTTTTGTCCCAAAAAGCCTGGTAACAATCTAACCGCGTGAAAAACATAATTCTGCTGTTATGCT A TAAGCTGTCTTGCTTCGTG T AAGAA CGTA GGGACATGTCACT GA TATA G A                                                                                              ]
[+] EMBL OSC0637A             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       tcgATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGGCCATGTCTCATCCCCTGCCACTTCTGGTTCTGATCATGT GAACAAGCC TATTCCTGG ACCGAGAATGCCGG ATGGGACAA GGGGCTTTACAATGGGGCGTGGTAAATCTCCTACATTCCAGAAAGGGGATAATGCTGAAGAATAGTGCTTTTGTCCCAAAAAGCCTGGTAACAATCTAACCGCGTGAAAAACATAATTCTGCTGTTATGCT A TAAGCTGTCTTGCTTCGTG T AAGAACCGTAGGGGACATGTCACTGGA TATAGG AAAGGCTCTT A                                                                                   ]


>consensus_14275#0 CGGGGCGGCGGCTCGGCTCCCCTGATCTCCCTCCCCTGCGCCGCTGCGCGGTATGGACCT CCAGGATCCAGCCGCGGACGCCGTCGCGGCCGAGCCACTCACCGTCGCCGAGACCGACGA CCAGCCGCCGCCGCCAGCGCCGCCTCTGGAGGCGGAGGGTGTTGTCGTCGCGGAGGAAGA CCCGCTGCCGCATCCGCCCCTTGAGGTGGTGGAGGAGGATGTGGCCCCCGTCGTCGCAGA AGCCGGCGCCGCTGCCGTACCTATGGAGCCCTCCGAGGCTGGCGCGGGTGGTGTCGTGCT CACCGACAAGCTCTGCGACCGGATCGTCAAACAGGTGGAGTACTACTTCAGCGATGAGAA TCTTCCTACGGATGAGTTCCTGATTAAATTCGTGAAGAAGAACAAGCAGGGGTTTGTTCC TATTGGAGTTATTGCCTCATTCAGAAGAATGAAGAAACTCAGTCAGGATCTCTCTATAAT TGAAGCTGCACTTAGGACATCATCTAAGCTGGTCGTGAGTCCAGATGGGAAAAGGGTCAG GAGGTTACATCCATTGCCAAATAATGAATTGAATGATGTTAAGAAAAGGATAGTCGTGGT GGAAAATCTGCCTTCTGATTTCTCCATGGAAAGCATACATGCGAAATTTGAAACAGTTGG GAAAATTGCGAAGATAACCATTCATGATCAACATTCAGTGGGAGAATCTGCAACAATTAA GAACCATGACATCATGCTAAGTAACAAGGTGCATGCTCTTGTTGAATATGAAACAGCAGA GGCAGCTGAGAAAGCTGCTATCACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAA AGTCAGGCTGGCTAAGCGAACCGTAGGATCAGGAAAGCATAACCAGTCTTCAAAAGAAAA TCAGGCCATCCAGGGCCAGCCTTCAAAAGTAGAGCAGCAGATGGTATCAGAAAAGAATGG TGGTACTGATTCAGTGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCA TGAGGACATGCACCAACACCAAAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGATATAA ATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGGCCATGTCTCATCCCC TGCCACTTCTGGTTCTGATCATGTGAACAAGCCTATTCCTGGACCGAGAATGCCGGATGG GACAAGGGGCTTTACAATGGGGCGTGGTAAATCTCCTACATTCCAGAAAGGGGATAATGC TGAAGAATAGTGCTTTTGTCCCAAAAAGCCTGGTAACAATCTAACCGCGTGAAAAACATA ATTCTGCTGTTATGCTATAAGCTGTCTTGCTTCGTGTAAGAACGTAGGGACATGTCACTG ATATAGAAAGGCTCTTATTTTTTAAAAAAAATTTTCTGAATTAACTGGNGCTTTAGTAGG NCTGGTAAAATTTAACCTCATGANAACCATTGGTA



consensusID : consensus_14275#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 554
fasta sequence
                              [CGGTCGACCCACGCGTCCGCAACACCAAAAGTAAATGCTAAAGGAGGACGAAAAGTCGATATAAATCTCAAGGAAGAGGTCAGATTCACCAAATACAAGTGGGCAAGCCATGTCTCATCCCTCCACTTCTGGTTCTGATCATGTGAACAAGCCTATTCCTGGACCGAGAATGCCAGATGGGACAAGGGGCTTTACCATGGGGCGTGGTAAATCTCCTACATTCCAGAAAGGGGATAATGCTGAAGAATAGTGCTTTTGTCCCCAAAAGCCTGGTAACCATCTAACCGCGTGAAAAACATTATTCTGCTGTTATGCTATAAGCTGTCTTGCTTCGTGTAAGAACGTAAGGGACATGT--CC-TGATATAGAAAAGGCTCTTATTTTTTAATGTAGTGTCTTTTCTGAATTAACTGGTGCTTTAGTAGGTCTGGTAAAAATTTAACCTCATGAAAAACATAGTACTGCTGTTATGCTATAAGCTGTCTTGCTTCGTGTAAGAACGTAGGGACATGTCACTGATATAGAAAAGGCTCTTATTTTTTATGTAAAAAAAAAA]

[+] EMBL BQ907477             [CGGTCGACCCACGCGTCCGCAACACCAAAAGTAAATGCTAAAGGAGGACGAAAAGTCGATATAAATCTCAAGGAAGAGGTCAGATTCACCAAATACAAGTGGGCAAGCCATGTCTCATCCCTCCACTTCTGGTTCTGATCATGTGAACAAGCCTATTCCTGGACCGAGAATGCCAGATGGGACAAGGGGCTTTACCATGGGGCGTGGTAAATCTCCTACATTCCAGAAAGGGGATAATGCTGAAGAATAGTGCTTTTGTCCCCAAAAGCCTGGTAACCATCTAACCGCGTGAAAAACATTATTCTGCTGTTATGCTATAAGCTGTCTTGCTTCGTGTAAGAACGTAAGGGACATGT  CC TGATATAGAAAAGGCTCTTATTTTTTAATGTAGTGTCTTTTCTGAATTAACTGGTGCTTTAGTAGGTCTGGTAAAAATTTAACCTCATGAAAAACATAGTACTGCTGTTATGCTATAAGCTGTCTTGCTTCGTGTAAGAACGTAGGGACATGTCACTGATATAGAAAA GCTCTTATTTTTTATGTAAAAAAAA  ]
[+] EMBL BM421145             [                                                                                                                                                                                                    cgctgtccgGGTAAATCTCCTACATTCCAGAAAGGGGATAATGCTGAAGAATAGTGCTTTTGTCCCAAAAAGCCTGGTAACAATCTAACCGCGTGAAAAACATTATTCTGCTGTTATGCTATAAGCTGTCTTGCTTCGTGTAAGAACGT AGGGACATGTCACCGTGATATAGAAAAGGCTCTTATTTTTTA  GTAG GTCTTTTCTGAATTAACTGGTGCTTTAGTAGGTCTGGT AAAATTTAACCTCATGAAAAACATAGTACTGCTGTTATGCTATAAGCTGTCTTGCTTCGTGTAAGAACGTAGGGACATGTCACTGATATAGAAAAGGCTCTTATTTTTTAaaaa         ]
[+] EMBL BQ907672             [                                                                                                                                                                                                                                                                                                                                                                                                                        TAACTGGTGCTTTAGTAGGTCTGGTAAAAATTTAACCTCATGAAAAACATAGTACTGCTGTTATGCTATAAGCTGTCTTGCTTCGTGTAAGAACGTAGGGACATGTCACTGATATAGAAAAGGCTCTTATTTTTTATGTAAAAAAAAAA]


>consensus_14275#1 CGGTCGACCCACGCGTCCGCAACACCAAAAGTAAATGCTAAAGGAGGACGAAAAGTCGAT ATAAATCTCAAGGAAGAGGTCAGATTCACCAAATACAAGTGGGCAAGCCATGTCTCATCC CTCCACTTCTGGTTCTGATCATGTGAACAAGCCTATTCCTGGACCGAGAATGCCAGATGG GACAAGGGGCTTTACCATGGGGCGTGGTAAATCTCCTACATTCCAGAAAGGGGATAATGC TGAAGAATAGTGCTTTTGTCCCCAAAAGCCTGGTAACCATCTAACCGCGTGAAAAACATT ATTCTGCTGTTATGCTATAAGCTGTCTTGCTTCGTGTAAGAACGTAAGGGACATGTCCTG ATATAGAAAAGGCTCTTATTTTTTAATGTAGTGTCTTTTCTGAATTAACTGGTGCTTTAG TAGGTCTGGTAAAAATTTAACCTCATGAAAAACATAGTACTGCTGTTATGCTATAAGCTG TCTTGCTTCGTGTAAGAACGTAGGGACATGTCACTGATATAGAAAAGGCTCTTATTTTTT ATGTAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14275#0      CGGGGCGGCGGCTCGGCTCCCCTGATCTCCCTCCCCTGCGCCGCTGCGCGGTATGGACCT 60
consensus_14275#1      ------------------------------------------------------------
                                                                                   

consensus_14275#0      CCAGGATCCAGCCGCGGACGCCGTCGCGGCCGAGCCACTCACCGTCGCCGAGACCGACGA 120
consensus_14275#1      ------------------------------------------------------------
                                                                                   

consensus_14275#0      CCAGCCGCCGCCGCCAGCGCCGCCTCTGGAGGCGGAGGGTGTTGTCGTCGCGGAGGAAGA 180
consensus_14275#1      ------------------------------------------------------------
                                                                                   

consensus_14275#0      CCCGCTGCCGCATCCGCCCCTTGAGGTGGTGGAGGAGGATGTGGCCCCCGTCGTCGCAGA 240
consensus_14275#1      ------------------------------------------------------------
                                                                                   

consensus_14275#0      AGCCGGCGCCGCTGCCGTACCTATGGAGCCCTCCGAGGCTGGCGCGGGTGGTGTCGTGCT 300
consensus_14275#1      ------------------------------------------------------------
                                                                                   

consensus_14275#0      CACCGACAAGCTCTGCGACCGGATCGTCAAACAGGTGGAGTACTACTTCAGCGATGAGAA 360
consensus_14275#1      ------------------------------------------------------------
                                                                                   

consensus_14275#0      TCTTCCTACGGATGAGTTCCTGATTAAATTCGTGAAGAAGAACAAGCAGGGGTTTGTTCC 420
consensus_14275#1      ------------------------------------------------------------
                                                                                   

consensus_14275#0      TATTGGAGTTATTGCCTCATTCAGAAGAATGAAGAAACTCAGTCAGGATCTCTCTATAAT 480
consensus_14275#1      ------------------------------------------------------------
                                                                                   

consensus_14275#0      TGAAGCTGCACTTAGGACATCATCTAAGCTGGTCGTGAGTCCAGATGGGAAAAGGGTCAG 540
consensus_14275#1      ------------------------------------------------------------
                                                                                   

consensus_14275#0      GAGGTTACATCCATTGCCAAATAATGAATTGAATGATGTTAAGAAAAGGATAGTCGTGGT 600
consensus_14275#1      ------------------------------------------------------------
                                                                                   

consensus_14275#0      GGAAAATCTGCCTTCTGATTTCTCCATGGAAAGCATACATGCGAAATTTGAAACAGTTGG 660
consensus_14275#1      ------------------------------------------------------------
                                                                                   

consensus_14275#0      GAAAATTGCGAAGATAACCATTCATGATCAACATTCAGTGGGAGAATCTGCAACAATTAA 720
consensus_14275#1      ------------------------------------------------------------
                                                                                   

consensus_14275#0      GAACCATGACATCATGCTAAGTAACAAGGTGCATGCTCTTGTTGAATATGAAACAGCAGA 780
consensus_14275#1      ------------------------------------------------------------
                                                                                   

consensus_14275#0      GGCAGCTGAGAAAGCTGCTATCACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAA 840
consensus_14275#1      ------------------------------------------------------------
                                                                                   

consensus_14275#0      AGTCAGGCTGGCTAAGCGAACCGTAGGATCAGGAAAGCATAACCAGTCTTCAAAAGAAAA 900
consensus_14275#1      ------------------------------------------------------------
                                                                                   

consensus_14275#0      TCAGGCCATCCAGGGCCAGCCTTCAAAAGTAGAGCAGCAGATGGTATCAGAAAAGAATGG 960
consensus_14275#1      ------------------------------------------------------------
                                                                                   

consensus_14275#0      TGGTACTGATTCAGTGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCA 1020
consensus_14275#1      ---------------------------------------------------------CGG 3
                                                                                *  

consensus_14275#0      TGAGGACATGCACCAACACCA--AAAAGTAAATGCTAAAGGAGGACGAAAAGGTCGATAT 1078
consensus_14275#1      TCGACCCACGCGTCCGCAACACCAAAAGTAAATGCTAAAGGAGGACGAAAAG-TCGATAT 62
                       *     ** **  *  ** **  ***************************** *******

consensus_14275#0      AAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGGCCATGTCTCATCC 1138
consensus_14275#1      AAATCTCAAGGAAGAGGTCAGATTCACCAAA-TACAAGTGGGCAAG-CCATGTCTCATCC 120
                       ************************** **** ************** *************

consensus_14275#0      CCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTATTCCTGGACCGAGAATGCCGGAT 1198
consensus_14275#1      CT--CCACTTCTGGTTCTGATCATGTGAACAAGCCTATTCCTGGACCGAGAATGCCAGAT 178
                       *   **************************************************** ***

consensus_14275#0      GGGACAAGGGGCTTTACAATGGGGCGTGGTAAATCTCCTACATTCCAGAAAGGGGATAAT 1258
consensus_14275#1      GGGACAAGGGGCTTTACCATGGGGCGTGGTAAATCTCCTACATTCCAGAAAGGGGATAAT 238
                       ***************** ******************************************

consensus_14275#0      GCTGAAGAATAGTGCTTTTGTCCCAAAAAGCCTGGTAACAATCTAACCGCGTGAAAAACA 1318
consensus_14275#1      GCTGAAGAATAGTGCTTTTGTCCCCAAAAGCCTGGTAACCATCTAACCGCGTGAAAAACA 298
                       ************************ ************** ********************

consensus_14275#0      TAATTCTGCTGTTATGCTATAAGCTGTCTTGCTTCGTGTAAGAACGTA-GGGACATGTCA 1377
consensus_14275#1      TTATTCTGCTGTTATGCTATAAGCTGTCTTGCTTCGTGTAAGAACGTAAGGGACATGTC- 357
                       * ********************************************** ********** 

consensus_14275#0      CTGATATAGAAA-GGCTCTTATTTTTTAAAAAAAA---TTTTCTGAATTAACTGGNGCTT 1433
consensus_14275#1      CTGATATAGAAAAGGCTCTTATTTTTTAATGTAGTGTCTTTTCTGAATTAACTGGTGCTT 417
                       ************ ****************   *     ***************** ****

consensus_14275#0      TAGTAGGNCTGGTAAAA-TTTAACCTCATGANAACCATTGGTA----------------- 1475
consensus_14275#1      TAGTAGGTCTGGTAAAAATTTAACCTCATGAAAAACAT-AGTACTGCTGTTATGCTATAA 476
                       ******* ********* ************* ** ***  ***                 

consensus_14275#0      ------------------------------------------------------------
consensus_14275#1      GCTGTCTTGCTTCGTGTAAGAACGTAGGGACATGTCACTGATATAGAAAAGGCTCTTATT 536
                                                                                   

consensus_14275#0      ------------------
consensus_14275#1      TTTTATGTAAAAAAAAAA 554
                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)