These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14292#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 2175 fasta sequence [CTTCACCTAGCTGCTGCTGCTGCTTCTTCTTCTTCTATCTGCTACTAGTAGCTCGCAGAAAAATACTCGCCTCGATCGACAAGCTCTCGTTGTTACCTTACCATGGACATGGACACCTCGCACCACTATCCATGGCTCAACTTCTCCCTCGCCCACCACTGTGAAATGGAGGAGGAGGAGAGGGGCGCGGCGGCCGAGCTGGCCGCGATAGCCGGGGCGGCTCCGCCGCCGAAACTGGAGGACTTCCTCGGCGGCGGCTGCAACGGGGGATCAAGCGGTGGCGCTTGCCCGCCGGTCCAGACGACGGCGCCGACGGCCGCCGAGCTGTACGAGTCGGAGCTCAAGTTTCTCGCCGCCGGCTTCCAGCTGAGCGGCGCGGCTGGGGCGGCGCCGCCAGTGCCCGCGCTGTTGCCGGCGGCTGCTCTAGAGCAGACCGACGAGACGAAGCAGCTGGCCTTGCCGCCGCAGGCCGCGGTGGCGCCGCCGCCGGAGCAGAAGAAGGCGGTGGACTCGTTCGGGCAGAGAACGTCTATCTACCGCGGCGTCACACGGCATCGGTGGACCGGAAGGTACGAGGCGCATCTGTGGGATAACAGCTGCCGGCGTGAGGGCCAGAGCCGCAAGGGACGCCAA---------GGTGGCTATGATAAGGAGGAGAAAGCGGCGAGGGCGTATGATCTTGCCGCGTTGAAGTACTGGGGTCCTAGCACCACAACCAACTTTCCGGTTGCCGAGTACGAAAAGGAGCTTGAGGAGATGAAGCATATGACACGCCAGGAGTTTGTAGCTTCACTTAGGAGGAAGAGCAGTGGATTCTCTCGTGGTGCTTCTATATACAGGGGTGTTACAAGACATCACCAGCATGGGCGATGGCAAGCAAGGATCGGAAGAGTGGCTGGCAACAAGGATCTCTACCTCGGAACATTCGGCACTGAGGAGGAAGCTGCAGAAGCTTAT-GACATC-GCGGCGATCAAGTTCCGTGGCCTGAATGCTGTCACCAACTTTGAGATCGGCCGGTATAACGTGGAGAGCATAATCAGTAGCAACCTTCCAATCGGGAGCATGGCCGGCAACCGGAGCACCAAGGCCGGCCTAGAGCTCGCTCCGTCGAGCTCCGCCGACGCCATCGCCGCCACCGAAGCGAACCACACCGGCGTCGCGCCACCGTCGACGCTTGCGTTCACAGCTCTTCCAATGAAGTATGATCAGGCAGATTACCTGTCATACCTCGCATTGCAGCATCACCAGCAAGGAAACCTTCAGGGGCTAGGCTTCGGTCTCTACAGCTCAGGTGTAAACCTGGATTTCGCAAATGCCAATGGCAATGGAGCCATGTCAAATTGCTACACCAATGTCTCATTACATGAGCAGCAGCAGCAACA-TCAGCACCAGCATCAGCAGGAGCAGCAGCAAGATCAA-CAGGATGATCAGTCACAAAGCT-CCAACAACAGCTGCGGCTCCATT-CCGTTTGCAACACCCATAGCTTTCAGTGGGTCATATGAAAGCT-CCATGACAGCAGCAGGCACCTTTGGATACTACCCAAATGTTGCAGCCTTTCAGACACCAATCTTTGGGATGGAATGATTT-GGGGAGGTGGCACTTTGCAGGCAAAAAGGATGAAGAGCCTGATCCCTGATCAGAGGTGATGAGGATCAAGACTGACATAGTTCATTCTCACACAACAACAACAACAACAAACATAAAGAGCAGGGGAAAAGAGAGGTAATGTAGTAGTAGTGGTATGATGATAAAGTATGATGCAAACATAGTAGGAAGCAGTATGCAGGAGAGAGATACTGACAGGTCAGAGACAGGAGGAGAAGACTCTGCTAACAAAACGATGCAGCGCAAGCATATTGTTTTATTTTACTGCCCTTTTACCCTTTTGTAGCTTTGTTTTCTTGTGCTTTTGTCATCGCTGAGCTTTGTTTGCCGCTCAGCTTCTTTTGAGCTTTTCTTTCTACTGACATGATTCTGCAAGTGCCATGATAGCTTAGCCCATGTACAATGGAAGCAGGGACGTCTCTTTGTAGCTTTTGCTTCTTTTCTTTTGTTAGATCGCCTTTGGTAGCGGCCCCTGTTTACTCAAGAAGTTGCTCTCCCTCCACAAGTATACAATGAAATGTACTGCAGGAACTAAACAATATAAGTTTTTGTAAAAAAAACCATAAAAAAAAA] [+] EMBL AK111891 [CTTCACCTAGCTGCTGCTGCTGCTTCTTCTTCTTCTATCTGCTACTAGTAGCTCGCAGAAAAATACTCGCCTCGATCGACAAGCTCTCGTTGTTACCTTACCATGGACATGGACACCTCGCACCACTATCCATGGCTCAACTTCTCCCTCGCCCACCACTGTGAAATGGAGGAGGAGGAGAGGGGCGCGGCGGCCGAGCTGGCCGCGATAGCCGGGGCGGCTCCGCCGCCGAAACTGGAGGACTTCCTCGGCGGCGGCTGCAACGGGGGATCAAGCGGTGGCGCTTGCCCGCCGGTCCAGACGACGGCGCCGACGGCCGCCGAGCTGTACGAGTCGGAGCTCAAGTTTCTCGCCGCCGGCTTCCAGCTGAGCGGCGCGGCTGGGGCGGCGCCGCCAGTGCCCGCGCTGTTGCCGGCGGCTGCTCTAGAGCAGACCGACGAGACGAAGCAGCTGGCCTTGCCGCCGCAGGCCGCGGTGGCGCCGCCGCCGGAGCAGAAGAAGGCGGTGGACTCGTTCGGGCAGAGAACGTCTATCTACCGCGGCGTCACACGGCATCGGTGGACCGGAAGGTACGAGGCGCATCTGTGGGATAACAGCTGCCGGCGTGAGGGCCAGAGCCGCAAGGGACGCCAAGTGTACTTGGGTGGCTATGATAAGGAGGAGAAAGCGGCGAGGGCGTATGATCTTGCCGCGTTGAAGTACTGGGGTCCTAGCACCACAACCAACTTTCCGGTTGCCGAGTACGAAAAGGAGCTTGAGGAGATGAAGCATATGACACGCCAGGAGTTTGTAGCTTCACTTAGGAGGAAGAGCAGTGGATTCTCTCGTGGTGCTTCTATATACAGGGGTGTTACAAGACATCACCAGCATGGGCGATGGCAAGCAAGGATCGGAAGAGTGGCTGGCAACAAGGATCTCTACCTCGGAACATTCGGCACTGAGGAGGAAGCTGCAGAAGCTTAT GACATC GCGGCGATCAAGTTCCGTGGCCTGAATGCTGTCACCAACTTTGAGATCGGCCGGTATAACGTGGAGAGCATAATCAGTAGCAACCTTCCAATCGGGAGCATGGCCGGCAACCGGAGCACCAAGGCCGGCCTAGAGCTCGCTCCGTCGAGCTCCGCCGACGCCATCGCCGCCACCGAAGCGAACCACACCGGCGTCGCGCCACCGTCGACGCTTGCGTTCACAGCTCTTCCAATGAAGTATGATCAGGCAGATTACCTGTCATACCTCGCATTGCAGCATCACCAGCAAGGAAACCTTCAGGGGCTAGGCTTCGGTCTCTACAGCTCAGGTGTAAACCTGGATTTCGCAAATGCCAATGGCAATGGAGCCATGTCAAATTGCTACACCAATGTCTCATTACATGAGCAGCAGCAGCAACA TCAGCACCAGCATCAGCAGGAGCAGCAGCAAGATCAA CAGGATGATCAGTCACAAAGCT CCAACAACAGCTGCGGCTCCATT CCGTTTGCAACACCCATAGCTTTCAGTGGGTCATATGAAAGCT CCATGACAGCAGCAGGCACCTTTGGATACTACCCAAATGTTGCAGCCTTTCAGACACCAATCTTTGGGATGGAATGATTT GGGGAGGTGGCACTTTGCAGGCAAAAAGGATGAAGAGCCTGATCCCTGATCAGAGGTGATGAGGATCAAGACTGACATAGTTCATTCTCACACAACAACAACAACAACAAACATAAAGAGCAGGGGAAAAGAGAGGTAATGTAGTAGTAGTGGTATGATGATAAAGTATGATGCAAACATAGTAGGAAGCAGTATGCAGGAGAGAGATACTGACAGGTCAGAGACAGGAGGAGAAGACTCTGCTAACAAAACGATGCAGCGCAAGCATATTGTTTTATTTTACTGCCCTTTTACCCTTTTGTAGCTTTGTTTTCTTGTGCTTTTGTCATCGCTGAGCTTTGTTTGCCGCTCAGCTTCTTTTGAGCTTTTCTTTCTACTGACATGATTCTGCAAGTGCCATGATAGCTTAGCCCATGTACAATGGAAGCAGGGACGTCTCTTTGTAGCTTTTGCTTCTTTTCTTTTGTTAGATCGCCTTTGGTAGCGGCCCCTGTTTACTCAAGAAGTTGCTCTCCCTCCACAAGTATACAATGAAATGTAC ] [+] EMBL AY062179 [ TGCTGCTTCTTCTTCTTCTATCTGCTACTAGTAGCTCGCAGAAAAATACTCGCCTCGATCGACAAGCTCTCGTTGTTACCTTACCATGGACATGGACACCTCGCACCACTATCCATGGCTCAACTTCTCCCTCGCCCACCACTGTGAAATGGAGGAGGAGGAGAGGGGCGCGGCGGCCGAGCTGGCCGCGATAGCCGGGGCGGCTCCGCCGCCGAAACTGGAGGACTTCCTCGGCGGCGGCTGCAACGGGGGATCAAGCGGTGGCGCTTGCCCGCCGGTCCAGACGACGGCGCCGACGGCCGCCGAGCTGTACGAGTCGGAGCTCAAGTTTCTCGCCGCCGGCTTCCAGCTGAGCGGCGCGGCTGGGGCGGCGCCGCCGGTGCCCGCGCTGTTGCCGGCGGCTGCTCTAGAGCAGACCGACGAGACGAAGCAGCTGGCCTTGCCGCCGCAGGCCGCGGTGGCGCCGCCGCCGGAGCAGAAGAAGGCGGTGGACTCGTTCGGGCAGAGAACGTCTATCTACCGCGGCGTCACACGGCATCGGTGGACCGGAAGGTACGAGGCGCATCTGTGGGATAACAGCTGCCGGCGTGAGGGCCAGAGCCGCAAGGGACGCCAA GGTGGCTATGATAAGGAGGAGAAAGCGGCGAGGGCGTATGATCTTGCCGCGTTGAAGTACTGGGGTCCTAGCACCACAACCAACTTTCCGGTTGCCGAGTACGAAAAGGAGCTTGAGGAGATGAAGCATATGACACGCCAGGAGTTTGTAGCTTCACTTAGGAGGAAGAGCAGTGGATTCTCTCGTGGTGCTTCTATATACAGGGGTGTTACAAGACATCACCAGCATGGGCGATGGCAAGCAAGGATCGGAAGAGTGGCTGGCAACAAGGATCTCTACCTCGGAACATTCGGCACTGAGGAGGAAGCTGCAGAAGCTTAT GACATC GCGGCGATCAAGTTCCGTGGCCTGAATGCTGTCACCAACTTTGAGATCGGCCGGTATAACGTGGAGAGCATAATCAGTAGCAACCTTCCAATCGGGAGCATGGCCGGCAACCGGAGCACCAAGGCCGGCCTAGAGCTCGCTCCGTCGAGCTCCGCCGACGCCATCGCCGCCACCGAAGCGAACCACACCGGCGTCGCGCCACCGTCGACGCTTGCGTTCACAGCTCTTCCAATGAAGTATGATCAGGCAGATTACCTGTCATACCTCGCATTGCAGCATCACCAGCAAGGAAACCTTCAGGGGCTAGGCTTCGGTCTCTACAGCTCAGGTGTAAACCTGGATTTCGCAAATGCCAATGGCAATGGAGCCATGTCAAATTGCTACACCAATGTCTCATTACATGAGCAGCAGCAGCAACA TCAGCACCAGCATCAGCAGGAGCAGCAGCAAGATCAA CAGGATGATCAGTCACAAAGCT CCAACAACAGCTGCGGCTCCATT CCGTTTGCAACACCCATAGCTTTCAGTGGGTCATATGAAAGCT CCATGACAGCAGCAGGCACCTTTGGATACTACCCAAATGTTGCAGCCTTTCAGACACCAATCTTTGGGATGGAATGATTT GGGGAGGTGGCACTTTGCAGGCAAAAAGGATGAAGAGCCTGATCCCTGATCAGAGGTGATGAGGATCAAGACTGACATAGTTCATTCTCACACAACAACAACAACAACAAACATAAAGAGCAGGGGAAAAGAGAGGTAATGTAGTAGTAGTGGTATGATGATAAAGTATGATGCAAACATAGTAGGAAGCAGTATGCAGGAGAGAGATACTGACAGGTCAGAGACAGGAGGAGAAGACTCTGCTAACAAAACGATGCAGCGCAAGCATATTGTTTTATTTTACTGCCCTTTTACCCTTTTGTAGCTTTGTTTTCTTGTGCTTTTGTCATCGCTGAGCTTTGTTTGCCGCTCAGCTTCTTTTGAGCTTTTCTTTCTACTGACATGATTCTGCAAGTGCCATGATAGCTTAGCCCATGTACAATGGAAGCAGGGACGTCTCTTTGTAGCTTTTGCTTCTTTTCTTTTGTTAGATCGCCTTTGGTAGCGGCCCCTGTTTACTCAAGAAGTTGCTCTCCCTCCACAAGTATACAATGAAATGTACTGCAGGAACTAAACAATATAAGTTTTTGTAAAAAAAA ] [+] EMBL AU085826 [ TGCTGCTTCTTCTTCTTCTATCTGCTACTAGTAGCTCGCAGAAAAATACTCGCCTCGATCGACAAGCTCTCGTTGTTACCTTACCATGGACATGGACACCTCGCACCACTATCCATGGCTCAACTTCTCCCTCGCCCACCACTGTGAAATGGAGGAGGAGGAGAGGGGCGCGGCGGCCGAGCTGGCCGCGATA CCGGGGCGGCTCCGCCGCGAAAACTGGAGGACTTCCTCGGCGGCGGCTGCAACGGGGGATCAAGCGGTGGCG TTGCCCGCCGGTCCAGACGACGGGGCCGANGGCCGCCAAGCTGTACGAGTCGGAG TCAA TTTCTCGCCGCCGGg ] [+] EMBL OSC103481 [ TATCTGCTACTAGTAGCTCGCAGAAAAATACTCGCCTCGATCGACAAGCTCTCGTTGTTACCTTACCATGGACATGGACACCTCGCACCACTATNCATGGCTCAACTTCTCCCTCGCCCACCACTGTAAAATGGAGGAGGAGGAGAGGGGCGCGGCGGCCGAGCTGGCCGGAATTANCGGGGCGGCTCCGCCG NAAAACTGGAGGACTTCCTCGGCGGCGGCTGCAACGGGGGATNAAGCGGTGG ] [+] EMBL C97438 [ A GGTGGCTATGATAAGGAGGAGAAAGCGGCGAGGGCGTATGATCTTGCCGCGTTGAAGTACTGGGGTNCTAGCACCACAACCAACTTTCCGGTTGCCGAGTACGAAAAGGAGCTTGAGGAGATGAAGCATATGACACGCCAGGAGTTTGTAGCTTCACTTAGGAGGAAGAGCAGTGGATTCTCTCGTGGTGCTTCTATATACAGGGGTGTTACAAGACATCACCAGCATGGGCGATGGCAAGCAAGGATCGGAAGAGTGGCTGGCAACAAGGATCTCTACCTCGGAACATTCGGCACTNAGGAGGAAGCTGCAGAAGCTTATNGACATCAGCGGCGATCAAGTTCCngtt ] [+] EMBL CF307104 [ GGCACTGAGGAGGAAGCTGCAGAAGCTTAT GACATC GCGGCGATCAAGTTCCGTGGCCTGAATGCTGTCACCAACTTTGAGATCGGCCGGTATAACGTGGAGAGCATAATCAGTAGCAACCTTCCAATCGGGAGCATGGCCGGCAACCGGAGCACCAAGGCCGGCCTAGAGCTCGCTCCGTCGAGCTCCGCCGACGCCATCGCCGCCACCGAAGCGAACCACACCGGCGTCGCGCCACCGTCGACGCTTGCGTTCACAGCTCTTCCAATGAAGTATGATCAGGCAGATTACCTGTCATACCTCGCATTGCAGCATCACCAGCAAGGAAACCTTCAGGGGCTAGGCTTCGGTCTCTACAGCTCAGGTGTAAACCTGGATTTCGCAAATGCCAATGGCAATGGAGCCATGTCAAATTGCTACACCAATGTCTCATTACATGAGCAGCAGCAGCAACA TCAGCACCAGCATCAGCAGGAGCAGCAGCAAGATCAA CAGGATGATCAGTCACAAAGCT CCAACAACAGCTGCGGCTCCATT CCGTTTGCAACACCCATAGCTTTCAGTGGGTCATATGAAAGCT CCATGACAGCAGCAGGCACCTTTGGATACTACCCAAATGTTGCAGCCTTTCAGACACCAATCTTTGGGATGGA ] [+] EMBL CF327398 [ TGCCAATGGCAATGGAGCCATGTCAAATTGCTACACCAATGTCTCATTACATGAGCAGCAGCAGCAACA TCAGCACCAGCATCAGCAGGAGCAGCAGCAAGATCAA CAGGATGATCAGTCACAAAGCT CCAACAACAGCTGCGGCTCCATT CCGTTTGCAGCACCCATAGCTTTCAGTGGGTCATATGAAAGCT CCATGACAGCAGCAGGCACCTTTGGATACTACCCAAATGTTGCAGCCTTTCAGACGCCAATCTTTGGGATGGAATGATTTGGGGGAGGTGGCACTTTGCAGGCAAAAAGGATGAAGAGCCTGATCCCTGATCAGAGGTGATGAGGATCAAGACTGACATAGTTCATTCTCACACAACAACAACAACAACAAACATAAAGAGCAGGGGAAAAGAGAGGTAATGTAGTAGTAGTGGTATGATGATAAAGTATGATGCAAACATAGTACGAAGCAGTATGCAGGAGAGAGATACTGACAGGTCAGAGACAGGAGGAGAAGACTCTGCTAACAAAACGATGCAGCGCAAGCATATTGTTTTATTTTACTGCCCTTTTACCCTTTTGTAGCTTTGTTTTCTTGTGCTTTTGTCATCGCTGAGCTTTGTTTGCCGCTCAGCTTCTTTTGAGCTTTTCTTTCTACTGACATGATTCTGCAAGTGCC ] [+] EMBL AU100727 [ AGCAACATTCAGCACCAGCATCAGCAGGAGCAGCAGCAAGNTCAACCAGGATGATCAGTCACAAAGCTCCCAACAACAGCTGCGGCTCCATTCCCGTTTGCAACACCCATAGCTTTCAGTGGGTCATATGAAAGCT CCATGACAGCAGCAGGCACCTTTGGATACTACCCAAATGTTGCAGCNTTTCAGACACCAATCTTTGGGATGGAATGATTT GGGGAGGTGGCACTTTGCAGGCAAAAAGGATGAAGAGCCTGATCCCTGATCAGAGGTGATGAGGATCAAGACTGACATAGTTCATTCTCACACAACAACAACAACAACAAACATAAAGAGCAGGGGAAAAGAGAGGTAATGTAGTAGTAGTGGTATGATGATAAAGTATGATGCAAACATAGTAGGAAGCAGTATGCAGGAGAGAGATACTGACAGGTCAGAGACAGGAGGAGAAGACTCTGCTAACAAAACGATGCAGCGCAAGCATATTGTTTTATTTTACTGCCCTTTTACCCTTTTGTAGCTTTGTTTTCTTGTGCTTTTGTCATCGCTGAGCTTTGTTTGCCGCTCAGCTTCTTTTGAGCTTTTCTTTCTACTGACATGATTCTGCAAGTGCCATGATAGCTTAGCCCATGTACAATGGAAGCAGGGACGTCTCTTTGTAaaaa ] [+] EMBL AU085827 [ GCTCCATT CCGTTTGCAACACCCATAGCTTTCAGTGGGTCATATGAAAGCTCCCATGACAGCAGCAGGCACCTTTGGATACTACCCAAATGTTGCAGCCTTTCAGACACCAATCTTTGGGATGGAATGATTT GGGGAGGTGGCACTTTGCAGGCAAAAAGGATGAAGAGCCTGATCCCTGATCAGAGGTGATGAGGATCAAGACTGACATAGTTCATTCTCACACAACAACAACAACAACAAACATAAAGAGCAGGGGAAAAGAGAGGTAATGTAGTAGTAGTGGTATGATGATAAAGTATGATGCAAACATAGTAGGAAGCAGTATGCAGGAGAGAGATACTGACAGGTCAGAGACAGGAGGAGAAGACTCTGCTAACAAAACGATGCAGCGCAAGCATATTGTTTTATTTTACTGCCCTTTTACCCTTTTGTAGCTTTGTTTTCTTGTGCTTTTGTCATCGCTGAGCTTTGTTTGCCGCTCAGCTTCTTTTGAGCTTTTCTTTCTACTGACATGATTCTGCAAGTGCCATGATAGCTTAGCCCATGTACAATGGAAGCAGGGACGTCTCTTTGTAGCTTTTGCTTCTTTTCTTTTGTTAGATCGCCTTTGGTAGCGGCCCCTGTTTACTCAAGAAGTTGCTCTCCCTCCACAAGTATACAATGAAATGTACTGCAGGAACTAAAaa ] [+] EMBL AK059064 [ ACAACAACAACAACAACAAACATAAAGAGCAGGGGAAAAGAGAGGTAATGTAGTAGTAGTGGTATGATGATAAAGTATGATGCAAACATAGTAGGAAGCAGTATGCAGGAGAGAGATACTGACAGGTCAGAGACAGGAGGAGAAGACTCTGCTAACAAAACGATGCAGCGCAAGCATATTGTTTTATTTTACTGCCCTTTTACCCTTTTGTAGCTTTGTTTTCTTGTGCTTTTGTCATCGCTGAGCTTTGTTTGCCGCTCAGCTTCTTTTGAGCTTTTCTTTCTACTGACATGATTCTGCAAGTGCCATGATAGCTTA ] [-] EMBL CF327399 [ AAGAGCAGGGGAAAAGAGAGGTAATGTAGTAGTAGTGGTATGATGATAAAGTATGATGCAAACATAGTACGAAGCAGTATGCAGGAGAGAGATACTGACAGGTCAGAGACAGGAGGAGAAGACTCTGCTAACAAAACGATGCAGCGCAAGCATATTGTTTTATTTTACTGCCCTTTTACCCTTTTGTAGCTTTGTTTTCTTGTGCTTTTGTCATCGCTGAGCTTTGTTTGCCGCTCAGCTTCTTTTGAGCTTTTCTTTCTACTGACATGATTCTGCAAGTGCCATGATAGCTTAGCCCATGTACAATGGAAGCAGGGACGTCTCTTTGTAGCTTTTGCTTCTTTTCTTTTGTTAGATCGCCTTTGGTAGCGGCCCCTGTTTACTCAAGAAGTTGCTCTCCCTCCACAAGTATACAATGAAATGTACTGCAGGAACTAAACAATATAAGTTTTTGTAACATTTTCCATAAAAAAAAA] [+] EMBL AU166949 [ GTAGTAGTGGTATGATGATAAAGTATGATGCAAACATAGTAGGAAGCAGTATGCAGGAGAGAGATACTGACAGGTCAGAGACAGGAGGAGAAGACTCTGCTAACAAAACGATGCAGCGCAAGCATATTGTTTTATTTTACTGCCCTTTTACCCTTTTGTAGCTTTGTTTTCTTGTGCTTTTGTCATCGCTGAGCTTTGTTTGCCGCTCAGCTTCTTTTGAGCTTTTCTTTCTACTGACATGATTCTGCAAGTGCCATGATAGCTTAGCCCATGTNCAATGGAAGCAGGGACGTCTCTTTGTAGCTTTTGCTTCTTTTCTTTTGTTAGATCGCCTTTGGTAGCGGCCCCTGTTTACTCAAGAAGTTGCTCTCCCTCCACAAGTATACAATGAAATGTACTGCAGGAACTAAACAATATAAGTTTTTGTAAAAAAAA ] [+] EMBL CA757452 [ CAATGGAAGCAGGGACGTCTCTTTGTAGCTTTTGCTTCTTTTCTTTTGTTAGATCGCCTTTGGTAGCGGCCCCTGTTTACTCAAGAAGTTGCTCTCCCTCCACAAGTATACAATGAAATGTACTGCAGGAACTAAAAAAaaaa ] consensusID : consensus_14292#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 450 fasta sequence [CCAAGTGTACTTGGGTGGCTATGATAAGGAGGAGAAAGCGGCGAGGGCGTATGATCTTGCCGCGTTGAAGTACTGGGGTCCTAGCACCACAACCAACTTTCCGGTTGCCGAGTACGAAAAGGAGCTTGAGGAGATGAAGCATATGACACGCCAGGAGTTTGTAGCTTCACTTAGGAGGAAGAGCAGTGGATTCTCTCGTGGTGCTTCTATATACAGGGGTGTTACAAGACATCACCAGCATGGGCGATGGCAAGCAAGGATCGGAAGAGTGGCTGGCAACAAGGATCTCTACCTCGGAACATTCGGCACTGAGGAGGAAGCTGCAGAAGCTTATGACATCGCGGCGATCAAGTTCCGTGGCCTGAATGCTGTCACCAACTTTGAGATCGGCCGGTATAACGTGGAGAGCATAATCAGTAGCAACCTTCCAATCGGGAGCATGGCCGGCAA] [+] EMBL CF324329 [CCAAGTGTACTTGGGTGGCTATGATAAGGAGGAGAAAGCGGCGAGGGCGTATGATCTTGCCGCGTTGAAGTACTGGGGTCCTAGCACCACAACCAACTTTCCGGTTGCCGAGTACGAAAAGGAGCTTGAGGAGATGAAGCATATGACACGCCAGGAGTTTGTAGCTTCACTTAGGAGGAAGAGCAGTGGATTCTCTCGTGGTGCTTCTATATACAGGGGTGTTACAAGACATCACCAGCATGGGCGATGGCAAGCAAGGATCGGAAGAGTGGCTGGCAACAAGGATCTCTACCTCGGAACATTCGGCACTGAGGAGGAAGCTGCAGAAGCTTATGACATCGCGGCGATCAAGTTCCGTGGCCTGAATGCTGTCACCAACTTTGAGATCGGCCGGTATAACGTGGAGAGCATAATCAGTAGCAACCTTCCAATCGGGAGCATGGCCGGCAA] [+] EMBL CF324499 [CCAAGTGTACTTGGGTGGCTATGATAAGGAGGAGAAAGCGGCGAGGGCGTATGATCTTGCCGCGTTGAAGTACTGGGGTCCTAGCACCACAACCAACTTTCCGGTTGCCGAGTACGAAAAGGAGCTTGAGGAGATGAAGCATATGACACGCCAGGAGTTTGTAGCTTCACTTAGGAGGAAGAGCAGTGGATTCTCTCGTGGTGCTTCTATATACAGGGGTGTTACAAGACATCACCAGCATGGGCGATGGCAAGCAAGGATCGGAAGAGTGGCTGGCAACAAGGATCTCTACCTCGGAACATTCGGCACTGAGGAGGAAGCTGCAGAAGCTTATGACATCGCGG ] consensusID : consensus_14292#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence [TGATGCCATACTTTGTTAAGTACAATTAGCTAATTCAAATATGTTTCATGTGACATTACTATTCAGCCATTAGTAATTTACAGGTGGTGTTGATTTTACTTCAAGTACCTAAATAAAATTGACAATAACGCATCGTTCTTCTGCATATGTGTGGTGTTCAACAGCTGATTGTTGCTTGCTTCCTTCTTTCAGGCACTGAGGAGGAAGCTGCAGAAGCTTATGACATCGCGGCGATCAAGTTCCGTGGCCTGAATGCTGTCACCAACTTTGAGATCGGCCGGTATAACGTGGAGAGCATAATCAGTAGCAACCTTCCAATCGGGAGCATGGCCGGCAACCGGAGCACCAAGGCCGGCCTAGAGCTCGTTCCGTCGAGTTCCGCCGACGCCATCGCCGCCACCGANGNGACCACAACGGCNGTCGGGCAACCGTCGACG] [+] EMBL C26446 [TGATGCCATACTTTGTTAAGTACAATTAGCTAATTCAAATATGTTTCATGTGACATTACTATTCAGCCATTAGTAATTTACAGGTGGTGTTGATTTTACTTCAAGTACCTAAATAAAATTGACAATAACGCATCGTTCTTCTGCATATGTGTGGTGTTCAACAGCTGATTGTTGCTTGCTTCCTTCTTTCAGGCACTGAGGAGGAAGCTGCAGAAGCTTATGACATCGCGGCGATCAAGTTCCGTGGCCTGAATGCTGTCACCAACTTTGAGATCGGCCGGTATAACGTGGAGAGCATAATCAGTAGCAACCTTCCAATCGGGAGCATGGCCGGCAACCGGAGCACCAAGGCCGGCCTAGAGCTCGTTCCGTCGAGTTCCGCCGACGCCATCGCCGCCACCGANGNGACCACAACGGCNGTCGGGCAACCGTCGACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14292#0 CTTCACCTAGCTGCTGCTGCTGCTTCTTCTTCTTCTATCTGCTACTAGTAGCTCGCAGAA 60 consensus_14292#1 ------------------------------------------------------------ consensus_14292#2 ------------------------------------------------------------ consensus_14292#0 AAATACTCGCCTCGATCGACAAGCTCTCGTTGTTACCTTACCATGGACATGGACACCTCG 120 consensus_14292#1 ------------------------------------------------------------ consensus_14292#2 ------------------------------------------------------------ consensus_14292#0 CACCACTATCCATGGCTCAACTTCTCCCTCGCCCACCACTGTGAAATGGAGGAGGAGGAG 180 consensus_14292#1 ------------------------------------------------------------ consensus_14292#2 ------------------------------------------------------------ consensus_14292#0 AGGGGCGCGGCGGCCGAGCTGGCCGCGATAGCCGGGGCGGCTCCGCCGCCGAAACTGGAG 240 consensus_14292#1 ------------------------------------------------------------ consensus_14292#2 ------------------------------------------------------------ consensus_14292#0 GACTTCCTCGGCGGCGGCTGCAACGGGGGATCAAGCGGTGGCGCTTGCCCGCCGGTCCAG 300 consensus_14292#1 ------------------------------------------------------------ consensus_14292#2 ------------------------------------------------------------ consensus_14292#0 ACGACGGCGCCGACGGCCGCCGAGCTGTACGAGTCGGAGCTCAAGTTTCTCGCCGCCGGC 360 consensus_14292#1 ------------------------------------------------------------ consensus_14292#2 ------------------------------------------------------------ consensus_14292#0 TTCCAGCTGAGCGGCGCGGCTGGGGCGGCGCCGCCAGTGCCCGCGCTGTTGCCGGCGGCT 420 consensus_14292#1 ------------------------------------------------------------ consensus_14292#2 ------------------------------------------------------------ consensus_14292#0 GCTCTAGAGCAGACCGACGAGACGAAGCAGCTGGCCTTGCCGCCGCAGGCCGCGGTGGCG 480 consensus_14292#1 ------------------------------------------------------------ consensus_14292#2 ------------------------------------------------------------ consensus_14292#0 CCGCCGCCGGAGCAGAAGAAGGCGGTGGACTCGTTCGGGCAGAGAACGTCTATCTACCGC 540 consensus_14292#1 ------------------------------------------------------------ consensus_14292#2 ------------------------------------------------------------ consensus_14292#0 GGCGTCACACGGCATCGGTGGACCGGAAGGTACGAGGCGCATCTGTGGGATAACAGCTGC 600 consensus_14292#1 ------------------------------------------------------------ consensus_14292#2 ------------------------------------------------------------ consensus_14292#0 CGGCGTGAGGGCCAGAGCCGCAAGGGACGCCAAGGTGGCTATGATAAGGAGGAGAAAGCG 660 consensus_14292#1 --------------------CCAAGTGTACTTGGGTGGCTATGATAAGGAGGAGAAAGCG 40 consensus_14292#2 ------------------------------------------------------------ consensus_14292#0 GCGAGGGCGTATGATCTTGCCGCGTTGAAGTACTGGGGTCCTAGCACCACAACCAACTTT 720 consensus_14292#1 GCGAGGGCGTATGATCTTGCCGCGTTGAAGTACTGGGGTCCTAGCACCACAACCAACTTT 100 consensus_14292#2 ----------------------------------------------------TGATGCCA 8 * consensus_14292#0 CCGGTTGCCGAGTACGAAAAGGAGCTTGAGGAGATGAAGCATATGACACGCCAGGAGTTT 780 consensus_14292#1 CCGGTTGCCGAGTACGAAAAGGAGCTTGAGGAGATGAAGCATATGACACGCCAGGAGTTT 160 consensus_14292#2 TACTTTGTTAAGTACAATTAGCTAATTCAA-ATATGTTTCATGTGACATTACTA----TT 63 *** ***** * ** ** * * *** *** ***** * ** consensus_14292#0 GTAGCTTCACTTAGGAGGAAGAGCAGTGGATTCT-CTCGTGGTGCTTCTATATACAGGGG 839 consensus_14292#1 GTAGCTTCACTTAGGAGGAAGAGCAGTGGATTCT-CTCGTGGTGCTTCTATATACAGGGG 219 consensus_14292#2 CAGCCATTAGTAATTTACAGGTGGTGTTGATTTTACTTCAAGTACCTAAATAAAATTGAC 123 * * * * * * * * ** **** * ** ** * * *** * * consensus_14292#0 TGTTACAAGACAT-CACCAGCATGGGCGATGGCAAGCAAGGATCGGAAGAGTGGCTGGCA 898 consensus_14292#1 TGTTACAAGACAT-CACCAGCATGGGCGATGGCAAGCAAGGATCGGAAGAGTGGCTGGCA 278 consensus_14292#2 AATAACGCATCGTTCTTCTGCATATGTG-TGGTGTTCAACAGCTG--ATTGTTGCTTGC- 179 * ** * * * * **** * * *** *** * * ** *** ** consensus_14292#0 ACAAGGATCTCTACCTCGGAACATTCGGCACTGAGGAGGAAGCTGCAGAAGCTTATGACA 958 consensus_14292#1 ACAAGGATCTCTACCTCGGAACATTCGGCACTGAGGAGGAAGCTGCAGAAGCTTATGACA 338 consensus_14292#2 -------TTCCTTCTT-------TCAGGCACTGAGGAGGAAGCTGCAGAAGCTTATGACA 225 * ** * * * ********************************** consensus_14292#0 TCGCGGCGATCAAGTTCCGTGGCCTGAATGCTGTCACCAACTTTGAGATCGGCCGGTATA 1018 consensus_14292#1 TCGCGGCGATCAAGTTCCGTGGCCTGAATGCTGTCACCAACTTTGAGATCGGCCGGTATA 398 consensus_14292#2 TCGCGGCGATCAAGTTCCGTGGCCTGAATGCTGTCACCAACTTTGAGATCGGCCGGTATA 285 ************************************************************ consensus_14292#0 ACGTGGAGAGCATAATCAGTAGCAACCTTCCAATCGGGAGCATGGCCGGCAACCGGAGCA 1078 consensus_14292#1 ACGTGGAGAGCATAATCAGTAGCAACCTTCCAATCGGGAGCATGGCCGGCAA-------- 450 consensus_14292#2 ACGTGGAGAGCATAATCAGTAGCAACCTTCCAATCGGGAGCATGGCCGGCAACCGGAGCA 345 **************************************************** consensus_14292#0 CCAAGGCCGGCCTAGAGCTCGCTCCGTCGAGCTCCGCCGACGCCATCGCCGCCACCGAAG 1138 consensus_14292#1 ------------------------------------------------------------ consensus_14292#2 CCAAGGCCGGCCTAGAGCTCGTTCCGTCGAGTTCCGCCGACGCCATCGCCGCCACCGANG 405 consensus_14292#0 CGAACCACACCGGCGTCGCGCCACCGTCGACGCTTGCGTTCACAGCTCTTCCAATGAAGT 1198 consensus_14292#1 ------------------------------------------------------------ consensus_14292#2 NGACCACAACGGCNGTCGGGCAACCGTCGACG---------------------------- 437 consensus_14292#0 ATGATCAGGCAGATTACCTGTCATACCTCGCATTGCAGCATCACCAGCAAGGAAACCTTC 1258 consensus_14292#1 ------------------------------------------------------------ consensus_14292#2 ------------------------------------------------------------ consensus_14292#0 AGGGGCTAGGCTTCGGTCTCTACAGCTCAGGTGTAAACCTGGATTTCGCAAATGCCAATG 1318 consensus_14292#1 ------------------------------------------------------------ consensus_14292#2 ------------------------------------------------------------ consensus_14292#0 GCAATGGAGCCATGTCAAATTGCTACACCAATGTCTCATTACATGAGCAGCAGCAGCAAC 1378 consensus_14292#1 ------------------------------------------------------------ consensus_14292#2 ------------------------------------------------------------ consensus_14292#0 ATCAGCACCAGCATCAGCAGGAGCAGCAGCAAGATCAACAGGATGATCAGTCACAAAGCT 1438 consensus_14292#1 ------------------------------------------------------------ consensus_14292#2 ------------------------------------------------------------ consensus_14292#0 CCAACAACAGCTGCGGCTCCATTCCGTTTGCAACACCCATAGCTTTCAGTGGGTCATATG 1498 consensus_14292#1 ------------------------------------------------------------ consensus_14292#2 ------------------------------------------------------------ consensus_14292#0 AAAGCTCCATGACAGCAGCAGGCACCTTTGGATACTACCCAAATGTTGCAGCCTTTCAGA 1558 consensus_14292#1 ------------------------------------------------------------ consensus_14292#2 ------------------------------------------------------------ consensus_14292#0 CACCAATCTTTGGGATGGAATGATTTGGGGAGGTGGCACTTTGCAGGCAAAAAGGATGAA 1618 consensus_14292#1 ------------------------------------------------------------ consensus_14292#2 ------------------------------------------------------------ consensus_14292#0 GAGCCTGATCCCTGATCAGAGGTGATGAGGATCAAGACTGACATAGTTCATTCTCACACA 1678 consensus_14292#1 ------------------------------------------------------------ consensus_14292#2 ------------------------------------------------------------ consensus_14292#0 ACAACAACAACAACAAACATAAAGAGCAGGGGAAAAGAGAGGTAATGTAGTAGTAGTGGT 1738 consensus_14292#1 ------------------------------------------------------------ consensus_14292#2 ------------------------------------------------------------ consensus_14292#0 ATGATGATAAAGTATGATGCAAACATAGTAGGAAGCAGTATGCAGGAGAGAGATACTGAC 1798 consensus_14292#1 ------------------------------------------------------------ consensus_14292#2 ------------------------------------------------------------ consensus_14292#0 AGGTCAGAGACAGGAGGAGAAGACTCTGCTAACAAAACGATGCAGCGCAAGCATATTGTT 1858 consensus_14292#1 ------------------------------------------------------------ consensus_14292#2 ------------------------------------------------------------ consensus_14292#0 TTATTTTACTGCCCTTTTACCCTTTTGTAGCTTTGTTTTCTTGTGCTTTTGTCATCGCTG 1918 consensus_14292#1 ------------------------------------------------------------ consensus_14292#2 ------------------------------------------------------------ consensus_14292#0 AGCTTTGTTTGCCGCTCAGCTTCTTTTGAGCTTTTCTTTCTACTGACATGATTCTGCAAG 1978 consensus_14292#1 ------------------------------------------------------------ consensus_14292#2 ------------------------------------------------------------ consensus_14292#0 TGCCATGATAGCTTAGCCCATGTACAATGGAAGCAGGGACGTCTCTTTGTAGCTTTTGCT 2038 consensus_14292#1 ------------------------------------------------------------ consensus_14292#2 ------------------------------------------------------------ consensus_14292#0 TCTTTTCTTTTGTTAGATCGCCTTTGGTAGCGGCCCCTGTTTACTCAAGAAGTTGCTCTC 2098 consensus_14292#1 ------------------------------------------------------------ consensus_14292#2 ------------------------------------------------------------ consensus_14292#0 CCTCCACAAGTATACAATGAAATGTACTGCAGGAACTAAACAATATAAGTTTTTGTAAAA 2158 consensus_14292#1 ------------------------------------------------------------ consensus_14292#2 ------------------------------------------------------------ consensus_14292#0 AAAACCATAAAAAAAAA 2175 consensus_14292#1 ----------------- consensus_14292#2 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||