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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14293#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1129 fasta sequence
[CTGTATTCTGGAATATATTGCCTCGAAAGCCCGAAGTAATCCCCAGTTTCCTGAAACCTGAATACCTGATCTATTTTAGACTATGAGGGAACAGTGACTTCCCCTTTGACCAAGTGGCTGATATGCTCATTATTGTTATCAATTCTTCCAGGAAAGGGAACGTGATCATTTCTCGCAGTTCATGACGGAAGGTTTTACATCATATTGTAGGAGAAAAAGAAGAGATAAGGTACATGGGAACAATATGGAGATCCAGGCATTTGCTGAGATGTACAATCGTCCGATTCACATATATTCCTATAGTACAGAGCCCATTAACATTTTTCAAGGAAGCTACAATACAGATGTCCCTCCAATTAGGCTAAGTTACCATCATGGTAATCATTACAATTCGGTGGTTGATCCTCGTGGGCTGACAGTAGGGGCAGGCCTGGGATTTAGTTCCCTTAGAGGGACAAATAACGTTGACAGGGATCAGGTGAAGGCCGCAATAAAAGCACAGCAAGATCAGCAGATTGAGAATGCACTTCTGGCTGAAGGACGACTATACTCTGATTTGGAGTTGACAGAGAAGGAAATAGAGCGGATGGTGATGGAGGCCTCACGAGCAGAGTATCTAAAGCAGCAGCAACAACAACTTAACTTCAGAGAGTCATCAACATCANGGGCAGAGCCATCTTCTTNTGCTGNGANTAGNGGGTCTTCTCGGTCAGCTGGGACTGNCGATNGAGTTGGCGAAGAGTGCTTNGTTTTTCCGGGCACCGNGCTAANCCG-AAAATGCAGCTTCTNCTGGCAANGGGCTTCAACTACATNCAGG-CATGGGAGCCCATAGCATATTTGGCGAGGACGTCGACTCAATGATCTACTACCTTGTGGAGATGGGAGGCACCGGAGCCTCTGCAGGTGGTAGCAATCGCAGGAAAGGAAAAGCTGCTGAGTGATCTGTGTACCTTTCACCGGCTATGACGAATCGAAATAAAAATAGTTATGCATAAGCCACAGGAGAGGGATGGCAAGACTCGTGGATTAAATGAGCTGAAATGTCAATATACTTTCCACTGTATGGAGTGATAACAAAATAAAATTCACTTCTTCCATATGTGGCCTGGCGTTTTCATGGCTGTCGGCA]
[+] EMBL CA767008 [CTGTATTCTGGAATATATTGCCTCGAAAGCCCGAAGTAATCCCCAGTTTCCTGAAACCTGAATACCTGATCTATTTTAGACTATGAGGGAACAGTGACTTCCCCTTTGACCAAGTGGCTGATATGCTCATTATTGTTATCAATTCTTCCAGGAAAGGGAACGTGATCATTTCTCGCAGTTCATGACGGAAGGTTTTACATCATATTGTAGGAGAAAAAGAAGAGATAAGGTACATGGGAACAATATGGAGATCCAGGCATTTGCTGAGATGTACAATCGTCCGATTCACATATATTCCTATAGTACAGAGCCCATTAACATTTTTCAAGGAAGCTACAATACAGATGTCCCTCCAATTAGGCTAAGTTACCATCATGGTAATCATTACAATTCGGTGGTTGATCCTCGTGGGCTGACAGTAGGGGCAGGCCTGGGATTTAGTTCCCTTAGAGGGACAAATAACGTTGACAGGGATCAGGTGAAGGCCGCAATAAAAGCACAGCAAGATCAGCAGATTGAGAATGCACTTCTGGCTGAAGGACGACTATACTCTGATTTGGAGTTGACAGAGAAGGAAATAGAGCGGATGGTGATGGAGGCCTCACGAGCAGAGTATCTAAAGCAGCAGCAACAACAACTTAACTTCAGAGAGTCATCAACATCANGGGCAGAGCCATCTTCTTNTGCTGNGANTAGNGGGTCTTCTCGGTCAGCTGGGACTGNCGATNGAGTTGGCGAAGAGTGCTTNGTTTTTCCGGGCACCGNGCTAANCCG AAAATGCAGCTTCTNCTGGCAANGGGCTTCAACTACATNCAGG CATGGGAGCCCA ]
[+] EMBL CA998137 [ TCCCTTAGAGGGACAAATAACGTTGACAGGGATCAGGTGAAGGCTGCAATAAAAGCACAGCAAGATCAGCAGATTGAGAATGCACTTCTGGCTGAAGGACGACTATACTCTGATTTGGAGTTGACAGAGAAGGAAATAGAGCGGATGGTGATGGAGGCCTCACGAGCAGAGTATCTAAAGCAGCAGCAACAACAACTTAACTTCAGAGAGTCATCAACATCAGGGGCAGAGCCATCTTCTTCTGCTGCGATTAGTGGGTCTTCTCGGTCAGCTGGGACTGCCGATAGAGTTGGCGAGGAGTGCTTCGTTCTCCCGGACACCGTGCTAACCCGCAGCATGCAGCTCCTCCTGGCAATGGGCTTCAACTACATCCAGGTCATGGAAGCCTATAGCATATTTGGCGAGGACGTCGACTCAATGATCTACTACCTTGTGGAGATGGGAGGCACCGGAGCCTCTGCAGGTGGTAGCAATCGCAGGAAAGGAAAAGCTGCTGAGTGATCTGTGTACCTTTCACCGGCTATGACGAATCGAAATAAAAATAGTTATGCATAAGCCACAGGAGAGGGATGGCAAGACTCGTGGATTAAATGAGCTGAAATGTCAATATACTTTCCACTGTATGGAGTGATAACAAAATAAAATTCACTTCTTCCATATGTGGCCTGGCGTTTTCATGGCTGTCGGCA]
consensusID : consensus_14293#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1117 fasta sequence
[ATGTTTGAACATGACCTAAGACGAGTGAGAGGATTTGAAATCAATAAGATGGCTGAAGATGGGAATTGTCTGTTTAGAGCAGTTGCAGATCAAGTTTATGGTGATCCAGAAGCTTATGACATGGCTAGGCAGATGTGTGTTGATTACATGGAAAGGGAACGTGATCATTTCTCGCAGTTCATGACGGAAGGTTTTACATCATATTGTAGGAGAAAAAGAAGAGATAAGGTATATGGGAACAATATGGAGATCCAGGCATTTGCTG-AGATGTACAATCGTCCGATTCACATATATTCCTATAGTACAGAGCCCATTAACATTTTTCAAGGAAGCTACAATACAGATGTCCCTCCAATTAGGCTAAGTTACCATCATGGTAATCATTACAATTCGGTGGTTGATCCTCGTGGGCTGACAGTAGGGGCAGGCCTGGGATTTAGTTCCCTTAGAGGGACAAATAACGTTGACAGGGATCAGGTGAAGGCTGCAATAAAAGCACAGCAAGATCAGCAGATTGAGAATGCACTTCTGGCTGAAGGACGACTATACTCTGATTTGGAGTTGACAGAGAAGGAAATAGAGCGGATGGTGATGGAGG-CCTC-ACGAGCAGAGTA-TCTAAAGCAGCAGCAACAACAACTTAACTTCAGAGAGTCATCAACATCAGGGGCAGAGCCATCTTC-TTCTGCTGCGATTAGTGGGTCTTCTCGGTCAGCTGGGACTGCCGATAGAGTTGGCGAGGAGTGCTTCGTTCTCCCGGACACCGTGCTAACCCGCAGCATGCAGCTCCTCCTGGCAATGGGCTTCAACTACATCCAGGTCATGGAAGCCTATAGCATATTTGGCGAGGACGTCGACTCAATGATCTACTACCTTGTGGAGATGGGAGGCACCGGAGCCTCTGCA-GGTGGTAGCA-ATCGCAGGAAAGGAAAAGCTGCTGAGTGATCTGTGTACCTTTCACCGGCTATGACGAATCGAAATA-AAAATAGTTATGCATAAGCCA-CAGGAGAGGGATGGCAAGACTC-GTGGATTAAATGAGCTGAAATGTCAATATACTTTCCACTGTATGGAGTGATAA-CAAAATAAAATTCACTTCTTCCATAAAAAAAAAAAAAAAAAA]
[+] EMBL AK061508 [ATGTTTGAACATGACCTAAGACGAGTGAGAGGATTTGAAATCAATAAGATGGCTGAAGATGGGAATTGTCTGTTTAGAGCAGTTGCAGATCAAGTTTATGGTGATCCAGAAGCTTATGACATGGCTAGGCAGATGTGTGTTGATTACATGGAAAGGGAACGTGATCATTTCTCGCAGTTCATGACGGAAGGTTTTACATCATATTGTAGGAGAAAAAGAAGAGATAAGGTATATGGGAACAATATGGAGATCCAGGCATTTGCTG AGATGTACAATCGTCCGATTCACATATATTCCTATAGTACAGAGCCCATTAACATTTTTCAAGGAAGCTACAATACAGATGTCCCTCCAATTAGGCTAAGTTACCATCATGGTAATCATTACAATTCGGTGGTTGATCCTCGTGGGCTGACAGTAGGGGCAGGCCTGGGATTTAGTTCCCTTAGAGGGACAAATAACGTTGACAGGGATCAGGTGAAGGCTGCAATAAAAGCACAGCAAGATCAGCAGATTGAGAATGCACTTCTGGCTGAAGGACGACTATACTCTGATTTGGAGTTGACAGAGAAGGAAATAGAGCGGATGGTGATGGAGG CCTC ACGAGCAGAGTA TCTAAAGCAGCAGCAACAACAACTTAACTTCAGAGAGTCATCAACATCAGGGGCAGAGCCATCTTC TTCTGCTGCGATTAGTGGGTCTTCTCGGTCAGCTGGGACTGCCGATAGAGTTGGCGAGGAGTGCTTCGTTCTCCCGGACACCGTGCTAACCCGCAGCATGCAGCTCCTCCTGGCAATGGGCTTCAACTACATCCAGGTCATGGAAGCCTATAGCATATTTGGCGAGGACGTCGACTCAATGATCTACTACCTTGTGGAGATGGGAGGCACCGGAGCCTCTGCA GGTGGTAGCA ATCGCAGGAAAGGAAAAGCTGCTGAGTGATCTGTGTACCTTTCACCGGCTATGACGAATCGAAATA AAAATAGTTATGCATAAGCCA CAGGAGAGGGATGGCAAGACTC GTGGATTAAATGAGCTGAAATGTCAATATACTTTCCACTGTATGGAGTGATAA CAAAATAAAATTCA ]
[+] EMBL BP185010 [ATGTTTGAACATGACCTAAGACGAGTGAGAGGATTTGAAATCAATAAGATGGCTGAAGATGGGAATTGTCTGTTTAGAGCAGTTGCAGATCAAGTTTATGGTGATCCAGAAGCTTATGACATGGCTAGGCAGATGTGTGTTGATTACATGGAAAGGGAACGTGATCATTTCTCGCAGTTCATGACGGAAGGTTTTACATCATATTGTAGGAGAAAAAGAAGAGATAAGGTATATGGGAACAATATGGAGATCCAGGCATTTGCTG AGATGTACAATCGTCCGATTCACATATATTCCTATAGTACAGAGCCCATTAACATTTTTCAAGGAAGCTACAATACAGATGTCCCTCCAATTAGGCTAAGTTACCATCATGGTAATCATTACAATTCGGTGGTTGATCCTCGTGGGCTGACAGTAGGGGCAGGCCTGGGATTTAGTTCCCTT ]
[+] EMBL BP184924 [ATGTTTGAACATGACCTAAGACGAGTGAGAGGATTTGAAATCAATAAGATGGCTGAAGATGGGAATTGTCTGTTTAGAGCAGTTGCAGATCAAGTTTATGGTGATCCAGAAGCTTATGACATGGCTAGGCAGATGTGTGTTGATTACATGGAAAGGGAACGTGATCATTTCTCGCAGTTCATGACGGAAGGTTTTACATCATATTGTAGGAGAAAAAGAAGAGATAAGGTATATGGGAACAATATGGAGATCCAGGCATTTGCTG AGATGTACAATCGTCCGATTCACATATATTCCTATAGTACAGAGCCCATTAACATTTTTCAAGGAAGCTACAATACAGATGTCCCTCCAATTAGGCTAAGTT ]
[+] EMBL AU030864 [ATGTTTGAACATGACCTAAGACGAGTGAGAGGATTTGAAATCAATAAGATGGCTGAAGATGGGAATTGTCTGTTTAGAGCAGTTGCAGATCAAG TTATGGTGATCCAGAAGCTTATGACATGGCTAGGCAGATGTGTGTTGATTACATGGAAAGGGAACGTGATCATTTCTCGCAGTTCATGACGGAAGGTTTTACATCATATTGTAGGAGAAAAAGAAGAGATAAGGTATATGGGAACAATATGGAGATCCAGGCATTTGCTGAAGATGTACAATCGTCCGATTCACATATATTCCTATAGTACAGAGCCCATT ACATTTTTCAAGGAAGCTACAt ]
[-] EMBL CB654965 [ CCATTAACA TTTTCAAGGAAGCTACAATACAGATGTCCCTCCAATTAGGCTAAGTTACCATCATGGTAATCATTACAATTCGGTGGTTGATCCTCGTGGGCTGACAGTAGGGGCAGGCCTGGGATTTAGTTCCCTTAGAGGGACAAATAACGTTGACAGGGATCAGGTGAAGGCTGCAATAAAAGCACAGCAAGATCAGCAGATTGAGAATGCACTTCTGGCTGAAGGACGACTATACTCTGATTTGGAGTTGACAGAGAAGGAAATAGAGCGGATGGTGATGGAGG CCTC ACGAGCAGAGTA TCTAAAGCAGCAGCAACAACAACTTAACTTCAGAGAGTCATCAACATCAGGGGCAGAGCCATCTTC TTCTGCTGCGATTAGTGGGTCTTCTCGGTCAGCTGGGACTGCCGATAGAGTTGGCGAGGAGTGCTTCGTTCTCCCGGACACCGTGCTAACCCGCAGCATGCAGCTCCTCCTGGCAATGGGCTTCAACTACATCCAGGTCATGGAAGCCTATAGCATATTTGGCGAGGACGTCGACTCAATGATCTACTACCTTGTGGAGATGGGAGGCACCGGAGCCTCTGCA GGTGGTAGCA ATCGCAGGAAAGGAAAAGCTGCTGAGTGATCTGTGTACCTTTCACCGGCTATGACGAATCGAAATA AAAATAGTTATGCATAAGCCA CAGGAGAGGGATGGCAAGACTC GTGGATTAAATGAGCTGAAATGTCAATATACTTTCCTCTATAAGGAGTGATAA CAAAATAAAATT ]
[+] EMBL AU097029 [ ATCCTCGTGGGCTGACAGTAGGGGCAGGCCTGGGATTTAGTTCCCTTAGAGGGACAAATAACGTTGACAGGGATCAGGTGAAGGCTGCAATAAAAGCACAGCAAGATCAGCAGATTGAGAATGCACTTCTGGCTGAAGGACGACTATACTCTGATTTGGAGTTGACAGAGAAGGAAATAGAGCGGATGGTGATGGAGG CCTC ACGAGCAGAGTA TCTAAAGCAGCAGCAACAACAACTTAACTTCAGAGAGTCATCAACATCAGGGGCAGAGCCATCTTC TTCTGCTGCGATTAGTGGGTCTTCTCGGTCAGCTGGGACTGCCGATAGAGTTGGCGAGGAGTGCTTCGTTCTCCCGGACACCGTGCTAACCCGCAGCATGCAGCTCCTCCTGGCAATGGGCTTCAACTACATCCAGGTCATGGAAGCCTATAGCATATTTGGCGAGGACGTCGACTCAATGATCTACTACCTTGTGGAGATGGGAGGCACCGGAGCCTCTGCA GGTGGTAGCA ATCGCAGGAAAGGAAAAGCTGCTGAGTGATCTGTGTACCTTTCACCGGCTATGACGAATCGAAATA AAAATAGTTATGCATAAGCCA CAGGAGAGGGATGGCAAGACTC GTGGATTAAATGAGCTGAAATGTCAATATACTTTCCACTGTATGGAGTGATAA CAAAATAAAATTCACTTCTTCCATAAAAA ]
[-] EMBL CF326774 [ GGCCTGGGATTTAGTTCCCTTAGAGGGACAAATAACGTTGACAGGGATCAGGTGAAGGCTGCAATAAAAGCACAGCAAGATCAGCAGATTGAGAATGCACTTCTGGCTGAAGGACGACTATACTCTGATTTGGAGTTGACAGAGAAGGAAATAGAGCGGATGGTGATGGAGG CCTC ACGAGCAGAGTA TCTAAAGCAGCAGCAACAACAACTTAACTTCAGAGAGTCATCAACATCAGGGGCAGAGCCATCTTC TTCTGCTGCGATTAGTGGGTCTTCTCGGTCAGCTGGGACTGCCGATAGAGTTGGCGAGGAGTGCTTCGTTCTCCCGGACACCGTGCTAACCCGCAGCATGCAGCTCCTCCTGGCAATGGGCTTCAACTACATCCAGGTCATGGAAGCCTATAGCATATTTGGCGAGGACGTCGACTCAATGATCTACTACCTTGTGGAGATGGGAGGCACCGGAGCCTCTGCA GGTGGTAGCA ATCGCACGAAAGGAAAAGCTGCTGAGTGATCTGTGTACCTTTCACCGGCTATGACGAATCGAAATA AAAATAGTTATGCATAAGCCA CAGGAGAGGGATGGCAAGACTC GTGGATTAAATGAGCTGAAATGTCAATATACTTTCCACTGTATGGAGTGATAA CAAAATAAAATTCACTTCTTCCAAAAAAAAAAAAAAAAAA ]
[-] EMBL CA762711 [ GAGGGCCAAATACCGTTGCCAGGGATCAGGTGAAGGCTGCAATAAAAGCCCAGCAAGATCAGCAGATTGAGAATGCACTTCTGGCTGAAGGACGACTATACTCTGATTTGGAGTTGACAGAGAAGGAAATAGAGCGGATGGTGATGGAGG CCTC ACGGGCAGAGTA TCTAAAGCAGCAGCAGCAACAACTTAACTTCAGAGAGTCATCAACATCAGGGGCAGAGCCATCTTC TTTTGCTGCGATTAGTGGGTCTTCTCGGTCAGCTGGGACTGCCGATAGAGTTGGCGAGGAGTGCTTCGTTCTCCCGGACACCGTGCTAACCCGCAGCATGCAGCTCCTCCTGGCAATGGGCTTCAACTACATCCAGGTCATGGAAGCCTATAGCATATTTGGCGAGGACGTCGACTCAATGATCTACTACCTTGTGGAGATGGGAGGCACCGGAGCCTCTGCA GGTGGTAGCA ATCGCAGGAAAGGAAAAGCTGCTGAGTGATCTGTGTACCTTTCACCGGCTATGACGAATCGAAATA AAAATAGTTATGCATAAGCCA CAGGAGAGGGATGGCAAGACTC GTGGATTAAATGAGCTGAAATGTCAATATACTTTCCACTGTATGGAGTGATAA CAAAATAAAATTCACTCCTTCCAAAAAAAAAAAAAAAAAA ]
[-] EMBL CA762710 [ GAGGGCCAAATACCGTTGCCAGGGATCAGGTGAAGGCTGCAATAAAAGCCCAGCAAGATCAGCAGATTGAGAATGCACTTCTGGCTGAAGGACGACTATACTCTGATTTGGAGTTGACAGAGAAGGAAATAGAGCGGATGGTGATGGAGG CCTC ACGGGCAGAGTA TCTAAAGCAGCAGCAGCAACAACTTAACTTCAGAGAGTCATCAACATCAGGGGCAGAGCCATCTTC TTTTGCTGCGATTAGTGGGTCTTCTCGGTCAGCTGGGACTGCCGATAGAGTTGGCGAGGAGTGCTTCGTTCTCCCGGACACCGTGCTAACCCGCAGCATGCAGCTCCTCCTGGCAATGGGCTTCAACTACATCCAGGTCATGGAAGCCTATAGCATATTTGGCGAGGACGTCGACTCAATGATCTACTACCTTGTGGAGATGGGAGGCACCGGAGCCTCTGCA GGTGGTAGCA ATCGCAGGAAAGGAAAAGCTGCTGAGTGATCTGTGTACCTTTCACCGGCTATGACGAATCGAAATA AAAATAGTTATGCATAAGCCA CAGGAGAGGGATGGCAAGACTC GTGGATTAAATGAGCTGAAATGTCAATATACTTTCCACTGTATGGAGTGATAA CAAAATAAAATTCACTCCTTCCAAAAAAAAAAAAAAAAAA ]
[+] EMBL AU030865 [ AATGCACTTCTGGCTGAAGGCCGACTATACNCTGATTTGGANTTGCCAGAGAAGGAANTAGAGCGGATGGTGATGGAGGCCCTCNCCGAGCAGAGTATTCTAAAGCAGCAGCAACAACAACTTAACTTCAGAGAGTCATCAACATCAGGGTCAGAGCCATCTTC TTCTGCTGCGATTAGTGGGTCTTCTCGGTCAGCTGGGACTGCCGATAGAGTTGGCGAGGAGTGCTTCGTTCTCCCGGACACCGTGCTAACCCGCAGCATGCAGCTCCTCCTGGCAATGGGCTTCAACTACATCCAGGTCATGGAAGCCTATAGCATATTTGGCGAGGACGTCGACTCAATGATCTACTACCTTGTGGAGATGGGAGGCACCGGAGCCTCTGCA GGTGGTAGCA ATCGCAGGAAAGGAAAAGCTGCTGAGTGATCTGTGTACCTTTCACCGGCTATGACGAATCGAAATA AAAATAGTTATGCATAAGCCA CAGGAGAGGGATGGCAAGACTC GTGGATTAAATGAGCTGAAATGTCAATATACTTTCCACTGTATGGAGTGATAA CAAAATAAAATTCACTTCTTCCATAAAAAAAAAAAAAAAAAA]
[-] EMBL CF326113 [ CTGATTTGGAGTTGACAGAGAAGGAAATAGAGCGGATGGTGATGGAGG CCTC ACGAGCAGAGTA TCTAAAGCAGCAGCAACAACAACTTAACTTCAGAGAGTCATCAACATCAGGGGCAGAGCCATCTTC TTCTGCTGCGATTAGTGGGTCTTCTCGGTCAGCTGGGACTGCCGATAGAGTTGGCGAGGAGTGCTTCGTTCTCCCGGACACCGTGCTAACCCGCAGCATGCAGCTCCTCCTGGCAATGGGCTTCAACTACATCCAGGTCATGGAAGCCTATAGCATATTTGGCGAGGACGTCGACTCAATGATCTACTACCTTGTGGAGATGGGAGGCACCGGAGCCTCTGCA GGTGGTAGCA ATCGCACGAAAGGAAAAGCTGCTGAGTGATCTGTGTACCTTTCACCGGCTATGACGAATCGAAATA AAAATAGTTATGCATAAGCCA CAGGAGAGGGATGGCAAGACTC GTGGATTAAATGAGCTGAAATGTCAATATACTTTCCACTGTATGGAGTGATAA CAAAATAAAATTCACTTCTTCCAAAAAAAAAAAAAAAAAA ]
[+] EMBL BQ908092 [ GCCATCTTCTTTCTNCTGCGATTAGTGGGTCTTCTCGGTCAGCTGGGACTGCCGATAGAGTTGGCGAGGAGTGCTTCGTTCTCCCGGACCCCGTGCTAACCCGCAGCATNCAGCTCCTCCTGGCAATGGGCTTCAACTACATCCAGGTCATGGAAGCCTATAGCATATTTGGCGAGGACGTCGACTCAATGATCTACTACCTTGTGGAGATGGGAGGCACCGGAGCCTCTGCACGGTGGTAGCANATCGCAGGAAAGGAAAAGCTGCTGAGTGATCTGTGTACCTTTCACCGGCTATGACGAATCGAAATATAAAATAGTTATGCATAAGCCACCAGGAGAGGGATGGCAAGACTC GTGGATTAAATGAGCTGAAATGTCAATATACTTTCCNCTGTATGGAGTGATAACCAAAATNAAATTCACTACTTCCATAAAAAAAAAA ]
[+] EMBL AU181339 [ CCATCTTC TTCTGCTGCGATTAGTGGGTCTTCTCGGTCAGCTGGGACTGCCGATAGAGTTGGCGAGGAGTGCTTCGTTCTCCCGGACACCGTGCTAACCCGCAGCATGCAGCTCCTCCTGGCAATGGGCTTCAACTACATCCAGGTCATGGAAGCCTATAGCATATTTGGCGAGGACGTCGACTCAATGATCTACTACCTTGTGGAGATGGGAGGCACCGGAGCCTCTGCA GGTGGTAGCA ATCGCAGGAAAGGAAAAGCTGCTGAGTGATCTGTGTACCTTTCACCGGCTATGACGAATCGAAATA AAAATAGTTATGCATAAGCCA CAGGAGAGGGATGGCAAGACTCTGTGGATTAAATGAGCTGAAATGTCAATATACTTTCCNCTGTATGGAGTGATAA CAAAATAAAATTCNCTTCTTCCATAAAAAAAAA ]
consensusID : consensus_14293#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence
[NGAGCACGTTTGGGCCGGACGTCAGGCANCACTTTNTGGCAGTTCATGNNNGCAAGGTTTTACATCGANNTTGTAGGAGAAAAAGAAGAGATAAGGTATATGGGAACANTATGGNGATCCAGGCATTTCCTGAGATGTACAATCGTCCGATTCACATATATTCCTATAGTACAGAGCCCATTAACATTTTTNAAGGAAGCTACAATACAGATGTCCCTCCAATTAGGCTAAGTTACCATCATGGTAATCATTACAATTCGGTGGTTGATCC]
[+] EMBL OSS1316A [NGAGCACGTTTGGGCCGGACGTCAGGCANCACTTTNTGGCAGTTCATGNNNGCAAGGTTTTACATCGANNTTGTAGGAGAAAAAGAAGAGATAAGGTATATGGGAACANTATGGNGATCCAGGCATTTCCTGAGATGTACAATCGTCCGATTCACATATATTCCTATAGTACAGAGCCCATTAACATTTTTNAAGGAAGCTACAATACAGATGTCCCTCCAATTAGGCTAAGTTACCATCATGGTAATCATTACAATTCGGTGGTTGATCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14293#1 ----ATGTTTGAACATGAC-CTAAGACGAGTGAGAGGATTTGAAATCAATAAGATGGCTG 55
consensus_14293#2 ------------------------------------------------------------
consensus_14293#0 CTGTATTCTGGAATATATTGCCTCGAAAGCCCGAAGTAATCCCCAGTTTCCTGAAACCTG 60
consensus_14293#1 AAGATGGGAATTGTCTGTTTAGAGCAGTTGCAGATCAAGTTTATGGTGATCCAGAAGCTT 115
consensus_14293#2 ------------------------------------------------------------
consensus_14293#0 AATACCTGATCTATTTTAGACTATGAGGGAACAGTGACTTCCCCTTTGACCAAGTGGCTG 120
consensus_14293#1 ATGACATGGCTAGGCAGATGTGTGTTGATTACATGGAAAGGGAACGTGATCATTTCTCGC 175
consensus_14293#2 ----------NGAGCACGTTTGGGCCGG--ACGTC---AGGCANCAC-----TTTNTGGC 40
consensus_14293#0 ATATGCTCATTATTGTTATCAATTCTT----CCAGGAAAGGGAACGTGATCATTTCTCGC 176
* * *** * * *** * **
consensus_14293#1 AGTTCATGACGG-AAGGTTTTACATC-ATATTGTAGGAGAAAAAGAAGAGATAAGGTATA 233
consensus_14293#2 AGTTCATGNNNGCAAGGTTTTACATCGANNTTGTAGGAGAAAAAGAAGAGATAAGGTATA 100
consensus_14293#0 AGTTCATGACGG-AAGGTTTTACATC-ATATTGTAGGAGAAAAAGAAGAGATAAGGTACA 234
******** * ************* * **************************** *
consensus_14293#1 TGGGAACAATATGGAGATCCAGGCATTTGCTGAGATGTACAATCGTCCGATTCACATATA 293
consensus_14293#2 TGGGAACANTATGGNGATCCAGGCATTTCCTGAGATGTACAATCGTCCGATTCACATATA 160
consensus_14293#0 TGGGAACAATATGGAGATCCAGGCATTTGCTGAGATGTACAATCGTCCGATTCACATATA 294
******** ***** ************* *******************************
consensus_14293#1 TTCCTATAGTACAGAGCCCATTAACATTTTTCAAGGAAGCTACAATACAGATGTCCCTCC 353
consensus_14293#2 TTCCTATAGTACAGAGCCCATTAACATTTTTNAAGGAAGCTACAATACAGATGTCCCTCC 220
consensus_14293#0 TTCCTATAGTACAGAGCCCATTAACATTTTTCAAGGAAGCTACAATACAGATGTCCCTCC 354
******************************* ****************************
consensus_14293#1 AATTAGGCTAAGTTACCATCATGGTAATCATTACAATTCGGTGGTTGATCCTCGTGGGCT 413
consensus_14293#2 AATTAGGCTAAGTTACCATCATGGTAATCATTACAATTCGGTGGTTGATCC--------- 271
consensus_14293#0 AATTAGGCTAAGTTACCATCATGGTAATCATTACAATTCGGTGGTTGATCCTCGTGGGCT 414
***************************************************
consensus_14293#1 GACAGTAGGGGCAGGCCTGGGATTTAGTTCCCTTAGAGGGACAAATAACGTTGACAGGGA 473
consensus_14293#2 ------------------------------------------------------------
consensus_14293#0 GACAGTAGGGGCAGGCCTGGGATTTAGTTCCCTTAGAGGGACAAATAACGTTGACAGGGA 474
consensus_14293#1 TCAGGTGAAGGCTGCAATAAAAGCACAGCAAGATCAGCAGATTGAGAATGCACTTCTGGC 533
consensus_14293#2 ------------------------------------------------------------
consensus_14293#0 TCAGGTGAAGGCCGCAATAAAAGCACAGCAAGATCAGCAGATTGAGAATGCACTTCTGGC 534
consensus_14293#1 TGAAGGACGACTATACTCTGATTTGGAGTTGACAGAGAAGGAAATAGAGCGGATGGTGAT 593
consensus_14293#2 ------------------------------------------------------------
consensus_14293#0 TGAAGGACGACTATACTCTGATTTGGAGTTGACAGAGAAGGAAATAGAGCGGATGGTGAT 594
consensus_14293#1 GGAGGCCTCACGAGCAGAGTATCTAAAGCAGCAGCAACAACAACTTAACTTCAGAGAGTC 653
consensus_14293#2 ------------------------------------------------------------
consensus_14293#0 GGAGGCCTCACGAGCAGAGTATCTAAAGCAGCAGCAACAACAACTTAACTTCAGAGAGTC 654
consensus_14293#1 ATCAACATCAGGGGCAGAGCCATCTTCTTCTGCTGCGATTAGTGGGTCTTCTCGGTCAGC 713
consensus_14293#2 ------------------------------------------------------------
consensus_14293#0 ATCAACATCANGGGCAGAGCCATCTTCTTNTGCTGNGANTAGNGGGTCTTCTCGGTCAGC 714
consensus_14293#1 TGGGACTGCCGATAGAGTTGGCGAGGAGTGCTTCGTTCTCCCGGACACCGTGCTAACCCG 773
consensus_14293#2 ------------------------------------------------------------
consensus_14293#0 TGGGACTGNCGATNGAGTTGGCGAAGAGTGCTTNGTTTTTCCGGGCACCGNGCTAANCCG 774
consensus_14293#1 CAGCATGCAGCTCCTCCTGGCAATGGGCTTCAACTACATCCAGGTCATGGAAGCCTATAG 833
consensus_14293#2 ------------------------------------------------------------
consensus_14293#0 -AAAATGCAGCTTCTNCTGGCAANGGGCTTCAACTACATNCAGG-CATGGGAGCCCATAG 832
consensus_14293#1 CATATTTGGCGAGGACGTCGACTCAATGATCTACTACCTTGTGGAGATGGGAGGCACCGG 893
consensus_14293#2 ------------------------------------------------------------
consensus_14293#0 CATATTTGGCGAGGACGTCGACTCAATGATCTACTACCTTGTGGAGATGGGAGGCACCGG 892
consensus_14293#1 AGCCTCTGCAGGTGGTAGCAATCGCAGGAAAGGAAAAGCTGCTGAGTGATCTGTGTACCT 953
consensus_14293#2 ------------------------------------------------------------
consensus_14293#0 AGCCTCTGCAGGTGGTAGCAATCGCAGGAAAGGAAAAGCTGCTGAGTGATCTGTGTACCT 952
consensus_14293#1 TTCACCGGCTATGACGAATCGAAATAAAAATAGTTATGCATAAGCCACAGGAGAGGGATG 1013
consensus_14293#2 ------------------------------------------------------------
consensus_14293#0 TTCACCGGCTATGACGAATCGAAATAAAAATAGTTATGCATAAGCCACAGGAGAGGGATG 1012
consensus_14293#1 GCAAGACTCGTGGATTAAATGAGCTGAAATGTCAATATACTTTCCACTGTATGGAGTGAT 1073
consensus_14293#2 ------------------------------------------------------------
consensus_14293#0 GCAAGACTCGTGGATTAAATGAGCTGAAATGTCAATATACTTTCCACTGTATGGAGTGAT 1072
consensus_14293#1 AACAAAATAAAATTCACTTCTTCCATAAAAAAAAAAAAAAAAAA------------- 1117
consensus_14293#2 ---------------------------------------------------------
consensus_14293#0 AACAAAATAAAATTCACTTCTTCCATATGTGGCCTGGCGTTTTCATGGCTGTCGGCA 1129
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||