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Oryza sativa
cluster # 14301 cluster # 14301       Sequences # 16       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14301#0 length = 915 sequences # 14  
consensus_14301#1 length = 760 sequences # 1  
consensus_14301#2 length = 541 sequences # 1  

consensusID : consensus_14301#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 915
fasta sequence
                              [GCGAGAGGATTCCGATACCCTTCTCTNTCTCTCCGAGCTCGAATCCACCACCACCACCACCACCAATCGGAGCCACCGGAGAGCGGCGGCGCA-NAGACGGCGGCGGCTGCGGGGGGCGAGAGGCCGA-TTCGCCGGAGGAGAGAAGGAGAGAGAGAGAGAGATGGCGTTCACGATGCGCGCGGTGAAGGTGCCGCCGAACTCGGCGTCGCTGGAGGAGGCGCGGCACC-GCGT-GTTCGACTTCTTCAGG-CAGGCGTGCCGCGCCATCCCCTCCATCATGGAGA-TC-TACAA-CCTCGACGAC--GTCGTCACCCCGT-CCCAGCTCCGCTCCACCATCGCCAAGGA-GATCCGCAAGAACCAGGGCGTCACTAACCCCAAGGTCATTGATATGCTCCTGTTT-AAGGGGATGGAGGAGCTGGGCAACATCACCGAACACGCGAAGCAGCGCCATCACGTCATCGGGCAATATGTGGTCGGCCAAAAGGGACTGGTG-CAGGATATGGAGAAAGACCAAGGGTCCTCAGACTTCCTGAAGAAATTCTACACTAGCAATTACTCCTAATCTGTGCTGCAAACTCCTCCTCCTTCAGTAATACCCGAGAAGTGATCTGAATAAGACGCTGAGAACCCACAGCTTTAATTGTTTTATCACTGGAATCTTTTTGTTATTCTGCTTGATCCTTCAATCATCTGCGCAGTGTGGCGCTGTTGCTAGTGAATTGTTTGTAACTTGTAGACTGTACTCTGCAAAGTTGATGTTCATGAGTTCATACCGTGTGTCAATGGGTTCGAACTCATGTACCCAGCACATGACCATCACTCGTTTGTCGTGAAGTCATTGATTCGATTAATCTGTAGCATAAAAGGTCATGGCCATGGAAACAAAAAAAAAGTGTTGCCGTTNTCTAAAAAAAAAAAAAA]

[+] EMBL OSS3188A             [GCGAGAGGATTCCGATACCCTTCTCTNTCTCTCCGAGCTCGAATCCACCACCACCACCACCACCAATCGGAGCCACCGGAGAGCGGCGGNGCA NAGACGGCGGCGGCTGCGGGGGGCGAGAGGCCGA TTCGCCGGAGGAGAGAAGGAGAGAGAGAGAGAGATGGCGTTCACGATGCGCGCGGTGAAGGTGCCGCCGAACTCGGCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK059275             [                      CTCTCTCTCTCCGAGCTCGAATCCACCACCACCACCACCACCAATCGGAGCCACCGGAGAGCGGCGGCGCAGCAGACGGCGGCGGCTGCGGGGGGCGAGAGGCCGA TTCGCCGGAGGAGAGAAGGAGAGAGAGAGAGAGATGGCGTTCACGATGCGCGCGGTGAAGGTGCCGCCGAACTCGGCGTCGCTGGAGGAGGCGCGGCACC GCGT GTTCGACTTCTTCAGG CAGGCGTGCCGCGCCATCCCCTCCATCATGGAGA TC TACAA CCTCGACGAC  GTCGTCACCCCGT CCCAGCTCCGCTCCACCATCGCCAAGGA GATCCGCAAGAACCAGGGCGTCACTAACCCCAAGGTCATTGATATGCTCCTGTTT AAGGGGATGGAGGAGCTGGGCAACATCACCGAACACGCGAAGCAGCGCCATCACGTCATCGGGCAATATGTGGTCGGCCAAAAGGGACTGGTG CAGGATATGGAGAAAGACCAAGGGTCCTCAGACTTCCTGAAGAAATTCTACACTAGCAATTACTCCTAATCTGTGCTGCAAACTCCTCCTCCTTCAGTAATACCCGAGAAGTGATCTGAATAAGACGCTGAGAACCCACAGCTTTAATTGTTTTATCACTGGAATCTTTTTGTTATTCTGCTTGATCCTTCAATCATCTGCGCAGTGTGGCGCTGTTGCTAGTGAATTGTTTGTAACTTGTAGACTGTACTCTGCAAAGTTGATGTTCATGAGTTCATACCGTGTGTCAATGGGTTCGAACTCATGTACCCAGCA                                                                                                                 ]
[+] EMBL AK070897             [                                        GAATCCACCACCACCACCACCACCAATCGGAGCCACCGGAGAGCGGCGGCGCAGCAGACGGCGGCGGCTGCGGGGGGCGAGAGGCCGA TTCGCCGGAGGAGAGAAGGAGAGAGAGAGAGAGATGGCGTTCACGATGCGCGCGGTGAAGGTGCCGCCGAACTCGGCGTCGCTGGAGGAGGCGCGGCACC GCGT GTTCGACTTCTTCAGG CAGGCGTGCCGCGCCATCCCCTCCATCATGGAGA TC TACAA CCTCGACGAC  GTCGTCACCCCGT CCCAGCTCCGCTCCACCATCGCCAAGGA GATCCGCAAGAACCAGGGCGTCACTAACCCCAAGGTCATTGATATGCTCCTGTTT AAGGGGATGGAGGAGCTGGGCAACATCACCGAACACGCGAAGCAGCGCCATCACGTCATCGGGCAATATGTGGTCGGCCAAAAGGGACTGGTG CAGGATATGGAGAAAGACCAAGGGTCCTCAGACTTCCTGAAGAAATTCTACACTAGCAATTACTCCTAATCTGTGCTGCAAACTCCTCCTCCTTCAGTAATACCCGAGAAGTGATCTGAATAAGACGCTGAGAACCCACAGCTTTAATTGTTTTATCACTGGAATCTTTTTGTTATTCTGCTTGATCCTTCAATCATCTGCGCAGTGTGGCGCTGTTGCTAGTGAATTGTTTGTAACTTGTAGACTGTACTCTGCAAAGTTGATGTTCATGAGTTCATACCGTGTGTCAATGGGTTCGAACTCATGTACCCAGCACATGACCATCACTCGTTTGTCGTGAAGTCATTGATTCGATT                                                                        ]
[+] EMBL OSR23581A            [                                             CACCACCACCACCACCACCAATCGGAGCCACCGGAGAGCGGCGGTGCA NAGACGGCGGCGGCTGCGGGGGGCGAGAGGCCGA TTCGCCGGAGGAGAGAAGGAGAGAGAGAGAGAGATGGCGTTCACGATGNGCGCGGTGAAGGTGCNGCCGAACTCGGCGTCGCTGGAGGATGTGCGGCACC G GTGGTTCGACTTCTTCAGG CAGGNGTNCCGCGACATCNNCTCCATCATGGAGA TC TACAA CCTCGACGAC  GTCGTCACCCCGT CCCAGNTCCGNTCCACCATNGGCAAGNA GATCCGNAAGAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU162548             [                                             CACCACCACCACCACCACCAATCGGAGCCACCGGAGAGCGGCGGCGCA CAGACGGCGGCGGCTGCGGGGGGCGAGAGGCCGA TTCGCCGGAGGAGAGAAGGAGAGAGANAGAGAGATGGCGTTCACGATNCGCGCGGTGAAGGTGCCGCCGAACTCGGCGTCGCTGGAGGAGGCGCGGCACC G GT GTTCGACTTCTTCAGG CAGGCGTNCNGCGCCATCCCCTCCATCATGGAGA TC TA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL OSC18142             [                                                            CACCAATCGGAGCCACCGGAGAGCGGCGGNGCA NAGACGGCGGCGGCTGCGGGGGGCGAGAGGCCGA TTCGCCGGAGGAGAGAAGGAGAGAGAGAGAGAGATGGCGTTCACGATGCGCGCGGTGAAGGTGCCGCCGAACTCGGCGTCGCTGGAGGANGTGCGGCACC G GT GTTCGACTTCTTCAGG CAGGCGTGCCGCGCCATCCCCTNCATCATGGAGA TC TACAA CCTCGACGAC  GTCGTCACCCCGT  CCAGCTCCGNTNCACCATCGNCAAGGANGATCCGCAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU063646             [                                                            CACCAATCGGAGCCACCGGAGAGCGGCGGCGCA NAGACGGCGGCGGCTGCGGGGGGCGAGAGGCCGA TTCGCCGGAGGAGAGAAGGAGATAGANANANANATGGCGTTCACGATGCGCGCGGTGAAGGTGCCGCCGAACTCGG GTCGCTGGAGGAGGCGCGGCACCNGTGT  TTCGATTTCTTCAGG CAGGCGTNCCGCGCCATCCCCTCCATCATGGAGA TC TACAA CCTCGACGAC  GT GTCACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU058261             [                                                               CAATCGGAGCCACCGGAGAGCGGCGGCGCA CAGACGGCGGCGGCTGCGGGGGGCGAGAGGCCGA TTCGCCGGAGGAGAGAAGGAGAGAGAGAGAGAGATGGCGTTCACGATGCGCGCGGTGAAGGTGCCGCCGAACTCGGCGTCGCTGGAGGAGGCGCGGCACC GCGT GTTCGACTTCTTCAGG CAGGCGTGCCGCGCCATCCCCTCCATCATGGAGA TC TACAA CCTCGACGAC  GTCGTCACCCCGT CCCAGCTCCGCTCCACCATCGCCAAGGA GATCCGCAAGAACCAGGGCGTCACTAACCCCAAGGTCATTGATATGCTCCTGTTT AAGGGGATGGAGGAGCTGGGCAACATCACCGAACACGCGAA CAGCGCCATCACGTCATCGGGCAATATGTGGTCGGCCAAAAGGGACTGGTG CAGGATATGGAGAAAGACCAAGG                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU032339             [                                                                                                                            CCGATTTCGCCGGAGNAGAGAAGGAGAGAGAGAGAGAGATGGCTTTCACGATGCGCNCGTTGAAGGTGCCCCCGAANTCGGCGTCGCTGGAGGAGGC CGGCACC GCGT GTTCGACTTCTTCAGGCCAGG NTGCCGCGCCATCCCCTCCATCATGGAGA TC TACAA CCTCGACGAC  GTCGTCACCCCGTCCCCAG TCCGCTCCACCATCGCCAAGGA GATCCGCAAGAACCAGGGCGTCACTAACCCCAAGGTCATTGATATGCTCCTGTTT AAGGGGATGGAGGAGCTGGGCAACATCACCGAACACGCGAAGCAGCGCCATCACGTCATCGGGCAATATGTGGTCGGCCAAAAGGGACTGGTGCCAGGATATGGAGAAAGACCAAGGGTCCTCAGACTTCCTGAAGAAATTCTACACTAGCAATTACTCCTAATCTGTGCTGCAAACTCCTCCTCCTTCAGTAATACCCGAGAAGTGATCTGAATAAGACGCTGAGAACCCACAGCTTTAATTGTTTTATCACTGGAATCTTTTTGTTATTCTGCTTGATCCTTCAATCATCTGCGCAGTGTGGCGCTGTTGCTAGTGAATTGTTTGTAACTTGTAGACTGTACTCTGCAAAGTTGATGTTCATGAGTTCAaaaaaa                                                                                                                                                 ]
[+] EMBL BI805945             [                                                                                                                                                                                                                                                                                        gGGAGATTCTTACAACCCTCGA GACGTGTCGTCACCCCGT CTCAGCTCCGCTCCACCTTC CCAAGGA GATCCGCAAGAACCAGGGCGTCACCAACCCCAAGTTCATTGATATGCTCCTGTTT AAAGGGATGGAGGAGCTGGGCAACATCACCGAACACGCGAAGCAGCGCCATCACGTCATC GGCAATATGTGGTC GCC AAAGGGACTGGTG CAGGATATGGAGAAAGACCAAGGGTCCTCAGACTTCCTGAAGAAATTCTACACTAGCAATTACTCCTAATCTGTGCTGCAAACTCCTCCTCCTTCAGTAATACCCGAGAAGTGATCTGAATAAGACGCTGAGAACCCACAGCTTTAATTGTTTTATCACTGGAATCTTTTTGTTATTCTGCTTGATCCTTCAATCATCTGCGCAGTGTGGCGCTGTTGCTAGTGAATTGTTTGTAACTTGTAGACTGTACTCTGCAAAGTTGATGTTCATGAGTTCAaaaaaaa                                                                                                                                                ]
[+] EMBL AU031878             [                                                                                                                                                                                                                                                                                                                                                 CCATCGCCAAGGA GATCCGCAAGAACCAGGGCGTCACTAACCCCAAGGTCATTGATATGCTCCTGTTTAAAGGGGATGGAGGAGCTGGGCAACATCACCGAACACGCGAAGCAGCGCCATCACGTCATCGGGCAATATGTGGTCGGCCAAAAGGGACTGGTG CAGGATATGGAGAAAGACCAAGGGTCCTCAGACTTCCTGAAGAAATTCTACACTAGCAATTACTCCTAATCTGTGCTGCAAACTCCTCCTCCTTCAGTAATACCCGAGAAGTGATCTGAATAAGACGCTGAGAACCCACAGCTTTAATTGTTTTATCACTGGAATCTTTTTGTTATTCTGCTTGATCCTTCAATCATCTGCGCAGTGTGGCGCTGTTGCTAGTGAATTGTTTGTAACTTGTAGACTGTACTCTGCAAAGTTGATGTTCATGAGTTCAaaaaaa                                                                                                                                                 ]
[+] EMBL AU184461             [                                                                                                                                                                                                                                                                                                                                                               GATCCGCAAGAACCAGGGCGTCACTAACCCCAAGGTCATTGATATGCTCCTGTTT AAGGGGATGGAGGAGCTGGGCAACATCACCGAACACGCGAAGCAGCGCCATCACGTCATCGGGCAATATGTGGTCGGCCAAAAGGGACTGGTG CAGGATATGGAGAAAGACCAAGGGTCCTCAGACTTCCTGAAGAAATTCTACACTAGCAATTACTCCTAATCTGTGCTGCAAACTCCTCCTCCTTCAGTAATACCCGAGAAGTGATNTGAATAAGACGCTGAGAACCCNCAGCTTTAATTGTTTTATCACTGGAATCTTTTTGTTATTCTGCTTGATCCTTCAATCATCTGCGCAGTGTGGCGCTGTTGCTAGTGAATTGTTTGTAACTTGTAGACTGTACTCTGCAAAGTTGATGTTCATGAGTTCAaaaaaa                                                                                                                                                 ]
[+] EMBL AU091970             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ACGTCATCGGGCAATATGTGGTCGGCCAAAAGGGACTGGTG CAGGATATGGAGAAAGACCAAGGGTCCTCAGACTTCCTGAAGAAATTCTACACTAGCAATTACTCCTAATCTGTGCTGCAAACTCCTCCTCCTTCAGTAATACCCGAGAAGTGATCTGAATAAGACGCTGAGAACCCACAGCTTTAATTGTTTTATCACTGGAATCTTTTTGTTATTCTGCTTGATCCTTCAATCATCTGCGCAGTGTGGCGCTGTTGCTAGTGAATTGTTTGTAACTTGTAGACTGTACTCTGCAAAGTTGATGTTCATGAGTTCATACCGTGTGTCAATGGGTTCGAACTCATGTACCCAGCACATGACCATCACTCGTTTGTCGTGAAGTCATTGATTCGATTAATCTGTAGCATAAAAGGTCATGGCCATGGAAACAAAAAAAAA                             ]
[+] EMBL AU223067             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGGACTGGTG CAGGATATGGAGAAAGACCAAGGGTCCTCAGACTTCCTGAAGAAATTCTACACTAGCAATTACTCCTAATCTGTGCTGCAAACTCCTCCTCCTTCAGTAATACCCGAGAAGTGATNTGAATAAGACGCTGAGAACCCNCAGCTTTAATTGTTTTATCACTGGAATCTTTTTGTTATTCTGCTTGATCCTTCAATCATCTGCGCAGTGTGGCGCTGTTGCTAGTGAATTGTTTGTAACTTGTAGACTGTACTCTGCAAAGTTGATGTTCATGAGTTCATACCGTGTGTCAATGGGTTCGAACTCATGTACCCAGCACATGACCATCACTCGTTTGTCGTGAAGTCATTGATTCGATTAATCTGTAGCATAAAAGGTCATGGCCATGGAAACAAATAATAAGTGTTGCCGTTNTCTAAAAAAAAAAAAAA]


>consensus_14301#0 GCGAGAGGATTCCGATACCCTTCTCTNTCTCTCCGAGCTCGAATCCACCACCACCACCAC CACCAATCGGAGCCACCGGAGAGCGGCGGCGCANAGACGGCGGCGGCTGCGGGGGGCGAG AGGCCGATTCGCCGGAGGAGAGAAGGAGAGAGAGAGAGAGATGGCGTTCACGATGCGCGC GGTGAAGGTGCCGCCGAACTCGGCGTCGCTGGAGGAGGCGCGGCACCGCGTGTTCGACTT CTTCAGGCAGGCGTGCCGCGCCATCCCCTCCATCATGGAGATCTACAACCTCGACGACGT CGTCACCCCGTCCCAGCTCCGCTCCACCATCGCCAAGGAGATCCGCAAGAACCAGGGCGT CACTAACCCCAAGGTCATTGATATGCTCCTGTTTAAGGGGATGGAGGAGCTGGGCAACAT CACCGAACACGCGAAGCAGCGCCATCACGTCATCGGGCAATATGTGGTCGGCCAAAAGGG ACTGGTGCAGGATATGGAGAAAGACCAAGGGTCCTCAGACTTCCTGAAGAAATTCTACAC TAGCAATTACTCCTAATCTGTGCTGCAAACTCCTCCTCCTTCAGTAATACCCGAGAAGTG ATCTGAATAAGACGCTGAGAACCCACAGCTTTAATTGTTTTATCACTGGAATCTTTTTGT TATTCTGCTTGATCCTTCAATCATCTGCGCAGTGTGGCGCTGTTGCTAGTGAATTGTTTG TAACTTGTAGACTGTACTCTGCAAAGTTGATGTTCATGAGTTCATACCGTGTGTCAATGG GTTCGAACTCATGTACCCAGCACATGACCATCACTCGTTTGTCGTGAAGTCATTGATTCG ATTAATCTGTAGCATAAAAGGTCATGGCCATGGAAACAAAAAAAAAGTGTTGCCGTTNTC TAAAAAAAAAAAAAA



consensusID : consensus_14301#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 760
fasta sequence
                              [CCACCGGAGAGCGGCGGCGCAGCAGACGGCGGCGGCTGCGGGGGGCGAGAGGCCGATTCGCCGGAGGAGAGAAGGAGAGAGAGAGAGAGAGAGATGGCGTTCACGATGCGCGCGGTGAAGGTGCCGCCGAACTCGGCGTCGCTGGAGGAGGCGCGGGGCCNNNTGTTCNACTTCTTCAGGCAGGCGTGCCGCGCCATCCCCTCCATCATGGAGATCTACAACCTCGACGACGTCGTCACCCCGTCCCAGCTCCGCTCCACCATCGCCAAGGAGATCCGCAAGAACCAGGGCGTCACCAACCCCAAGGTCATTGATATGCTCCTGTTTAAGGGGATGGAGGAGCTGGGCAACATCACCGAACACGCGAAGCAGCGCCATCACGTCATCGGGCTATATGTGGTCGGCCAAAAGGGACTGGTGCAGGATATGGAGAAAGACCAAGGGTCCTCAGACTTCCTGAAGAAATGCTACACTAGCAATTACTCCTAATCTGAGCTGCAAACTCCTCCTTCAGTAATACCCGAGAAGGGTCTTGAATAANACGCTGAGAACCACAGCTTTAATTGTTTTATCACTGGAATCTTTTTGTTTTCTGCTGGTCCTTCATCATCTTGGCAATGTGGCGCTTTTGTTAGTGATTTGTTGTACTTGTGTACTGTCTTTGCAAGTTGATGTTTTGATTTCTATGTAAANTTTTTGTTATATTTTATTACATCTCTTGGGGAGTCCGTTCCCATTCTCCTTTAGTGAGTGTTTACCG]

[+] EMBL BE040655             [CCACCGGAGAGCGGCGGCGCAGCAGACGGCGGCGGCTGCGGGGGGCGAGAGGCCGATTCGCCGGAGGAGAGAAGGAGAGAGAGAGAGAGAGAGATGGCGTTCACGATGCGCGCGGTGAAGGTGCCGCCGAACTCGGCGTCGCTGGAGGAGGCGCGGGGCCNNNTGTTCNACTTCTTCAGGCAGGCGTGCCGCGCCATCCCCTCCATCATGGAGATCTACAACCTCGACGACGTCGTCACCCCGTCCCAGCTCCGCTCCACCATCGCCAAGGAGATCCGCAAGAACCAGGGCGTCACCAACCCCAAGGTCATTGATATGCTCCTGTTTAAGGGGATGGAGGAGCTGGGCAACATCACCGAACACGCGAAGCAGCGCCATCACGTCATCGGGCTATATGTGGTCGGCCAAAAGGGACTGGTGCAGGATATGGAGAAAGACCAAGGGTCCTCAGACTTCCTGAAGAAATGCTACACTAGCAATTACTCCTAATCTGAGCTGCAAACTCCTCCTTCAGTAATACCCGAGAAGGGTCTTGAATAANACGCTGAGAACCACAGCTTTAATTGTTTTATCACTGGAATCTTTTTGTTTTCTGCTGGTCCTTCATCATCTTGGCAATGTGGCGCTTTTGTTAGTGATTTGTTGTACTTGTGTACTGTCTTTGCAAGTTGATGTTTTGATTTCTATGTAAANTTTTTGTTATATTTTATTACATCTCTTGGGGAGTCCGTTCCCATTCTCCTTTAGTGAGTGTTTACCG]


>consensus_14301#1 CCACCGGAGAGCGGCGGCGCAGCAGACGGCGGCGGCTGCGGGGGGCGAGAGGCCGATTCG CCGGAGGAGAGAAGGAGAGAGAGAGAGAGAGAGATGGCGTTCACGATGCGCGCGGTGAAG GTGCCGCCGAACTCGGCGTCGCTGGAGGAGGCGCGGGGCCNNNTGTTCNACTTCTTCAGG CAGGCGTGCCGCGCCATCCCCTCCATCATGGAGATCTACAACCTCGACGACGTCGTCACC CCGTCCCAGCTCCGCTCCACCATCGCCAAGGAGATCCGCAAGAACCAGGGCGTCACCAAC CCCAAGGTCATTGATATGCTCCTGTTTAAGGGGATGGAGGAGCTGGGCAACATCACCGAA CACGCGAAGCAGCGCCATCACGTCATCGGGCTATATGTGGTCGGCCAAAAGGGACTGGTG CAGGATATGGAGAAAGACCAAGGGTCCTCAGACTTCCTGAAGAAATGCTACACTAGCAAT TACTCCTAATCTGAGCTGCAAACTCCTCCTTCAGTAATACCCGAGAAGGGTCTTGAATAA NACGCTGAGAACCACAGCTTTAATTGTTTTATCACTGGAATCTTTTTGTTTTCTGCTGGT CCTTCATCATCTTGGCAATGTGGCGCTTTTGTTAGTGATTTGTTGTACTTGTGTACTGTC TTTGCAAGTTGATGTTTTGATTTCTATGTAAANTTTTTGTTATATTTTATTACATCTCTT GGGGAGTCCGTTCCCATTCTCCTTTAGTGAGTGTTTACCG



consensusID : consensus_14301#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 541
fasta sequence
                              [CAGGCTCCGCCCATCCCCTCCATCATGGAGATCTACACTCGACGACGTCGTCACCCCGTCCCAGCTCCGCTCCACCATCGCCAAGGAGATCCGCAAGAACCAGGGCGTCACCAACCCCAAGGTCATTGATATGCTCCTGTTTAAGGGGATGGAGGAGCTGGGCAACATCACCGAACACGCGAAGCAGCGCCATCACGTCATCGGGCAATATGTGGTCGCCCAAAGGGACTGGTGCAGGATATGGAGAAAGACCAAGGGTCCTCAGACTTCCTGAAGAAATTCTACACTAGCATTACTCCTAATCTGAGCTGCAAACTCCTCCTTCAGTAATACCCGAGAAGTGATCTGAATAAGACGCTGAGAACCCACAGCTTTAATTGTTTTATCACTGGAATCTTTTTGTTATTCTGCTTGATCCTTCAATCATCTGCGCAGTGTGGCGCTGTTGCTAGTGAATTGTTTGTAACTTGTAGACTGTACTCTGCAAGTTGATGTTCATGAGTTCATACCGTGTGTCAATGGGTTCGAACTAAAAAAAAAA]

[+] EMBL BI796288             [CAGGCTCCGCCCATCCCCTCCATCATGGAGATCTACACTCGACGACGTCGTCACCCCGTCCCAGCTCCGCTCCACCATCGCCAAGGAGATCCGCAAGAACCAGGGCGTCACCAACCCCAAGGTCATTGATATGCTCCTGTTTAAGGGGATGGAGGAGCTGGGCAACATCACCGAACACGCGAAGCAGCGCCATCACGTCATCGGGCAATATGTGGTCGCCCAAAGGGACTGGTGCAGGATATGGAGAAAGACCAAGGGTCCTCAGACTTCCTGAAGAAATTCTACACTAGCATTACTCCTAATCTGAGCTGCAAACTCCTCCTTCAGTAATACCCGAGAAGTGATCTGAATAAGACGCTGAGAACCCACAGCTTTAATTGTTTTATCACTGGAATCTTTTTGTTATTCTGCTTGATCCTTCAATCATCTGCGCAGTGTGGCGCTGTTGCTAGTGAATTGTTTGTAACTTGTAGACTGTACTCTGCAAGTTGATGTTCATGAGTTCATACCGTGTGTCAATGGGTTCGAACTAAAAAAAAAA]


>consensus_14301#2 CAGGCTCCGCCCATCCCCTCCATCATGGAGATCTACACTCGACGACGTCGTCACCCCGTC CCAGCTCCGCTCCACCATCGCCAAGGAGATCCGCAAGAACCAGGGCGTCACCAACCCCAA GGTCATTGATATGCTCCTGTTTAAGGGGATGGAGGAGCTGGGCAACATCACCGAACACGC GAAGCAGCGCCATCACGTCATCGGGCAATATGTGGTCGCCCAAAGGGACTGGTGCAGGAT ATGGAGAAAGACCAAGGGTCCTCAGACTTCCTGAAGAAATTCTACACTAGCATTACTCCT AATCTGAGCTGCAAACTCCTCCTTCAGTAATACCCGAGAAGTGATCTGAATAAGACGCTG AGAACCCACAGCTTTAATTGTTTTATCACTGGAATCTTTTTGTTATTCTGCTTGATCCTT CAATCATCTGCGCAGTGTGGCGCTGTTGCTAGTGAATTGTTTGTAACTTGTAGACTGTAC TCTGCAAGTTGATGTTCATGAGTTCATACCGTGTGTCAATGGGTTCGAACTAAAAAAAAA A



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14301#0      GCGAGAGGATTCCGATACCCTTCTCTNTCTCTCCGAGCTCGAATCCACCACCACCACCAC 60
consensus_14301#2      ------------------------------------------------------------
consensus_14301#1      ------------------------------------------------------------
                                                                                   

consensus_14301#0      CACCAATCGGAGCCACCGGAGAGCGGCGGCGCAN-AGACGGCGGCGGCTGCGGGGGGCGA 119
consensus_14301#2      ------------------------------------------------------------
consensus_14301#1      ------------CCACCGGAGAGCGGCGGCGCAGCAGACGGCGGCGGCTGCGGGGGGCGA 48
                                                                                   

consensus_14301#0      GAGGCCGATTCGCCGGAGGAGAGAAGGAGAGAGAGAGAGAGA----TGGCGTTCACGATG 175
consensus_14301#2      ------------------------------------------------------------
consensus_14301#1      GAGGCCGATTCGCCGGAGGAGAGAAGGAGAGAGAGAGAGAGAGAGATGGCGTTCACGATG 108
                                                                                   

consensus_14301#0      CGCGCGGTGAAGGTGCCGCCGAACTCGGCGTCGCTGGAGGAGGCGCGGCACCGCGTGTTC 235
consensus_14301#2      ------------------------------------------------------------
consensus_14301#1      CGCGCGGTGAAGGTGCCGCCGAACTCGGCGTCGCTGGAGGAGGCGCGGGGCCNNNTGTTC 168
                                                                                   

consensus_14301#0      GACTTCTTCAGGCAGGCGTGCCGCGCCATCCCCTCCATCATGGAGATCTACAACCTCGAC 295
consensus_14301#2      ------------CAGGC--TCCGC-CCATCCCCTCCATCATGGAGATCTACA--CTCGAC 43
consensus_14301#1      NACTTCTTCAGGCAGGCGTGCCGCGCCATCCCCTCCATCATGGAGATCTACAACCTCGAC 228
                                   *****   **** ***************************  ******

consensus_14301#0      GACGTCGTCACCCCGTCCCAGCTCCGCTCCACCATCGCCAAGGAGATCCGCAAGAACCAG 355
consensus_14301#2      GACGTCGTCACCCCGTCCCAGCTCCGCTCCACCATCGCCAAGGAGATCCGCAAGAACCAG 103
consensus_14301#1      GACGTCGTCACCCCGTCCCAGCTCCGCTCCACCATCGCCAAGGAGATCCGCAAGAACCAG 288
                       ************************************************************

consensus_14301#0      GGCGTCACTAACCCCAAGGTCATTGATATGCTCCTGTTTAAGGGGATGGAGGAGCTGGGC 415
consensus_14301#2      GGCGTCACCAACCCCAAGGTCATTGATATGCTCCTGTTTAAGGGGATGGAGGAGCTGGGC 163
consensus_14301#1      GGCGTCACCAACCCCAAGGTCATTGATATGCTCCTGTTTAAGGGGATGGAGGAGCTGGGC 348
                       ******** ***************************************************

consensus_14301#0      AACATCACCGAACACGCGAAGCAGCGCCATCACGTCATCGGGCAATATGTGGTCGGCCAA 475
consensus_14301#2      AACATCACCGAACACGCGAAGCAGCGCCATCACGTCATCGGGCAATATGTGGTCG-CCCA 222
consensus_14301#1      AACATCACCGAACACGCGAAGCAGCGCCATCACGTCATCGGGCTATATGTGGTCGGCCAA 408
                       ******************************************* *********** ** *

consensus_14301#0      AAGGGACTGGTGCAGGATATGGAGAAAGACCAAGGGTCCTCAGACTTCCTGAAGAAATTC 535
consensus_14301#2      AAGGGACTGGTGCAGGATATGGAGAAAGACCAAGGGTCCTCAGACTTCCTGAAGAAATTC 282
consensus_14301#1      AAGGGACTGGTGCAGGATATGGAGAAAGACCAAGGGTCCTCAGACTTCCTGAAGAAATGC 468
                       ********************************************************** *

consensus_14301#0      TACACTAGCAATTACTCCTAATCTGTGCTGCAAACTCCTCCTCCTTCAGTAATACCCGAG 595
consensus_14301#2      TACACTAGCA-TTACTCCTAATCTGAGCTGCAAACTCCTC---CTTCAGTAATACCCGAG 338
consensus_14301#1      TACACTAGCAATTACTCCTAATCTGAGCTGCAAACTCCTC---CTTCAGTAATACCCGAG 525
                       ********** ************** **************   *****************

consensus_14301#0      AAGTGATCTGAATAAGACGCTGAGAACCCACAGCTTTAATTGTTTTATCACTGGAATCTT 655
consensus_14301#2      AAGTGATCTGAATAAGACGCTGAGAACCCACAGCTTTAATTGTTTTATCACTGGAATCTT 398
consensus_14301#1      AAGGGTCTTGAATAANACGCTGAGAACC-ACAGCTTTAATTGTTTTATCACTGGAATCTT 584
                       *** *   ******* ************ *******************************

consensus_14301#0      TTTGTTATTCTGCTTGATCCTTCAATCATCTGCGCAGTGTGGCGCTGTTGCTAGTGAATT 715
consensus_14301#2      TTTGTTATTCTGCTTGATCCTTCAATCATCTGCGCAGTGTGGCGCTGTTGCTAGTGAATT 458
consensus_14301#1      TTTGTT-TTCTGCT-GGTCCTTCA-TCATCTTGGCAATGTGGCGCTTTTGTTAGTGATTT 641
                       ****** ******* * ******* ******  *** ********* *** ****** **

consensus_14301#0      GTTTGTAACTTGTAGACTGTACTCTGCAAAGTTGATGTTCATGAGTTCATACCGTGTGTC 775
consensus_14301#2      GTTTGTAACTTGTAGACTGTACTCTGCAA-GTTGATGTTCATGAGTTCATACCGTGTGTC 517
consensus_14301#1      GTT-GTA-CTTGTGTACTGT-CTTTGCAA-GTTGATGTTTTGATTTCTATGTAAANTTTT 697
                       *** *** *****  ***** ** ***** *********      *  **      * * 

consensus_14301#0      AATGG-GTTCGAACTCATGTACCCAGCACATGACCATCACTCGTTTGTCGTGAAGTCATT 834
consensus_14301#2      AATGG-GTTCGAACTAAAAAAAAAA----------------------------------- 541
consensus_14301#1      TGTTATATTTTATTACATCTCTTGGGGAGTCCGTTCCCATTCTCCTTTAGTGAGTGTTTA 757
                         *    **  *    *                                           

consensus_14301#0      GATTCGATTAATCTGTAGCATAAAAGGTCATGGCCATGGAAACAAAAAAAAAGTGTTGCC 894
consensus_14301#2      ------------------------------------------------------------
consensus_14301#1      CCG--------------------------------------------------------- 760
                                                                                   

consensus_14301#0      GTTNTCTAAAAAAAAAAAAAA 915
consensus_14301#2      ---------------------
consensus_14301#1      ---------------------
                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)