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Oryza sativa
cluster # 14303 cluster # 14303       Sequences # 16       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14303#0 length = 1051 sequences # 12  
consensus_14303#1 length = 661 sequences # 1  
consensus_14303#2 length = 423 sequences # 2  
consensus_14303#3 length = 381 sequences # 1  

consensusID : consensus_14303#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1051
fasta sequence
                              [CTCTTCTCCGGGTCTAGGGTTTGCTGCTCCCCCTCCCCGCCGCCGCCGCCTCCGCCTCCGCCGCTCAGATGGGAGGCAAGTGCCCGCACCGC-AAGGTCAAGAAGCGCCGCCTCTCGCACAAG-ACGGCCCGCCGAGGCAAGTTCCTCGTCAAGGCCGACGA-CGCCGTCTACGACGAGCTGGTCAAGCTCGCCGACGCCGGCAAGGACGCCGACGCTA-CCCAGCTCCCCGT-CGACGAGGACC-TCCCCGGTATGGGACAGTTCTACTGCCTCCAC-TGCGATCGCTAC-TTTGCAAG-TGAGAGTGTCAAGGAGGAGCACTA-CCGC-TCAAAGC-GCCACAAGAAAAGGATCAAGC-AAATGTCAGGGCCAG-CCCCACATACTCAACTTGATGCAGAGCTTGCTGC-TGGAAT-GGGGATGCCTGACAATGGCCTGAAGCTCATGTCCATGTGAACCTCTTCTTGTT-CCTGGTTTTTACTC--ATATG-TTTTTGTCACTGCCGTACGTATGTACTTGCTCTGCTTAGTAGTTAATGGAGTTGAGTTGATGGTGTCTGTTGGTCCAAGAATTTACTTTTAAGAAGCCAAGGGTTACTCTGTTTTGCCTGCCTCAAAAAAAAAAGCTTTTGATTGAATATCAGTTACCTCAATCCAGGGCTTGGGATCAAAACCTGTTATTGGGTTAAAAAAAAAAAAAGAAACTCGGTGGGGGCCCGGGCCCAATGCCGCCTATGTGAGTGGATGGCTCCGCTCATGGGACGGGGTTTCAACGGGGAACTGGGAAACCGTGGGGGGCCCGCTTAATGTGTGTGGAGGATGCCGTTGGTGATGGGGGGTGAGGAAAGGGCGGACGGTGGCCCTCCCACATTAGGTCTGCTGATGTGAGGGGGCGCGCCGGGACGAGAGTCTACGCCTGGGTGGAGGGGTGCTGCTGGGATCTGGATGTGTGGAGCGGTGTCGAATGTTGAATTTATCTTGTTGGGTATTTGAAGATAGACAAGAGTGCTCGAGGTTCTATGTGCCGGTGGCTCGGGGAGTCAAGATATGGGGGTGTCAGGTGCGAG]

[+] EMBL CF336332             [CTCTTCTCCGGGTCTAGGGTTTGCTGCTCCCCCTCCCCGCCGCCGCCGCCTCCGCCTCCGCCGCTCAGATGGGAGGCAAGTGCCCGCACCGC AAGGTCAAGAAGCGCCGCCTCTCGCACAAG ACGGCCCGCCGAGGCAAGTTCCTCGTCAAGGCCGACGA CGCCGTCTACGACGAGCTGGTCAAGCTCGCCGACGCCGGCAAGGACGCCGACGCTA CCCAGCTCCCCGT CGACGAGGACC TCCCCGGTATGGGACAGTTCTACTGCCTCCAC TGCGATCGCTAC TTTGCAAG TGAGAGTGTCAAGGAGGAGCACTA CCGC TCAGAGC GCCACAAGAAAAGGATCAAGC AAATGTCAGGGCCAG CCCCACATACTCAACTTGATGCAGAGCTTGCTGC TGGAAT GGGGATGCCTGACAATGGCCTGAAGCTCATGTCCATGTGAACCTCTTCTTGTTCCCTGGTTTTTACTC  ATATGTTTTTTGTCACTGCCGTACGTATGTACTTGCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CF290903             [  CTTCTCCGGGTCTAGGGTTTGCTGCTCCCCCTCCCCGCCGCCGCCGCCTCCGCCTCCGCCGCTCAGATGGGAGGCAAGTGCCCGCACCGC AAGGTCAAGAAGCGCCGCCTCTCGCACAAG ACGGCCCGCCGAGGCAAGTTCCTCGTCAAGGCCGACGA CGCCGTCTACGACGAGCTGGTCAAGCTCGCCGACGCCGGCAAGGACGCCGACGCTA CCCAGCTCCCCGT CGACGAGGACC TCCCCGGTATGGGACAGTTCTACTGCCTCCAC TGCGATCGCTAC TTTGCAAG TGAGAGTGTCAAGGAGGAGCACTA CCGC TCAAAGC GCCACAAGAAAAGGATCAAGC AAATGTCAGGGCCAG CCCCACATACTCAACTTGATGCANAGCTTGCTGC TGGAAT GGGGATGCCTGACAATGGCCTGAAGCTCATGTCCATGTGAACCTCTTCTTGTT CCTGGTTTTTACTC  ATATG TTTTTGTCACTGCCGTACGTATGTACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CF325699             [         GGGTCTAGGGTTTGCTGCTCCCCCTCCCCGCCGCCGCCGCCTCCGCCTCCGCCGCTCAGATGGGAGGCAAGTGCCCGCACCGC AAGGTCAAGAAGCGCCGCCTCTCGCACAAG ACGGCCCGCCGAGGCAAGTTCCTCGTCAAGGCCGACGA CGCCGTCTACGACGAGCTGGTCAAGCTCGCCGACGCCGGCAAGGACGCCGACGCTA CCCAGCTCCCCGT CGACGAGGACC TCCCCGGTATGGGACAGTTCTACTGCCTCCAC TGCGATCGCTAC TTTGCAAG TGAGAGTGTCAAGGAGGAGCACTA CCGC TCAAAGC GCCACAAGAAAAGGATCAAGC AAATGTCAGGGCCAG CCCCACATACTCAACTTGATGCATAGCTTGCTGC TGGAAT GGGGATGCCTGACAATGGCCTGAAGCTCATGTCCATGTGAACCTCTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CF325905             [         GGGTCTAGGGTTTGCTGCTCCCCCTCCCCGCCGCCGCCGCCTCCGCCTCCGCCGCTCAGATGGGAGGCAAGTGCCCGCACCGC AAGGTCAAGAAGCGCCGCCTCTCGCACAAG ACGGCCCGCCGAGGCAAGTTCTTC TCATTGCCGACGA CGCCGTCTACTACGAGCTGGTCAAGCTCGCCGACGCCGGCAAGGACGCCGACGCTA CCCAGCTCCCCGT CGACGAGGACC TCCCCGGTATGGGACAGTTCTACTGCCTCCAC TGCGATCGCTAC TTTGCAAG TGAGAGTGTCAAGGAGGAGCACTA CCGC TCAAAGC GCCACAAGAAAAGGATCAAGC AAATGTCAGGGCCAG CCCCACATACTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU161123             [         GGGTCTAGGGTTTGCTGCTCCCCCTCCCCGCCGCCGCCGCCTCCGCCTCCGCCGCTCAGATGGGAGGCAAGTG CCGCACCGC AA GTCAAGAAGCGCCGCCTCTCGCACAAG ACGGCCCGCCGAGGCAAGTTCCTCGTCAAGGCCGACGA CGCCGTCTACGACGAGCTGGTCAAGCTCGCCGACGCCGG AAGGACGCCGACGCTA CCCAGCTCCCCGT CGACGAGGACC TCCCCGGTATGGGACAGTTCTACTGCCTCCAC TGCGATCGCTAC TTTGCAAG TGAGAGTGTCAAGGAGGAGCACTA CCGC TCAAAGC GCCACAAGAAAAGGATCAAGC AAATGTCAGGGCCAG  CCCACATACTNAANTTGATGCAGAG TTGCTGCTTGGAAT GGGGATGCCTGACAATGG CTNAAGCTCATGTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU166163             [           GTCTAGGGTTTGCTGCTCCCCCTCCCCGCCGCCGCCGCCTCCGCCTCCGCCGCTCAGATGGGAGGCAAGTGCCCGCACCGC AAGGTCAAGAAGCGCCGCCTCTCGCACAAG ACGGCCCGCCGAGGCAAGTTCCTCGTCAAGGCCGACGA CGCCGTCTACGACGAGCTGGTCAAGCTCGCCGACGCCGGCAAGGACGCCGACGCTA CCCAGCTCCCCGT CGACGAGGACCTTCCCCGGTATGGGACAGTTCTACTGGCTCCACTTGCGATCG TACTTTTGCAAGTTGAGAGTGTCAAGGAGGAG ACTA ACGCTTCAAAGC GGCACAAG AAAGGTTNAAGC AATNTTAAGGGGCAa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL OSC25672             [                           TCCCCCTCCCCGCCGNCGCCGNCTCCGCCTCCGCCGCTCAGATGGGAGGCAAGTNNCCGCACCGN AAGGTCAAGAAGCGCCGNCTCTCGNACAAG ACGGCCCGCCGAGGCAAGTTCCTCGTNAAGGNCGACGA CGCCGTCTACGACGAGCTGGTCAAGCTCNACGACGCCGGCAAGGACGACGAAGCTAa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL OSC29041             [                                      GCCGCCGCCGCCTCCGCCTCCGCCGCTCAGATGGGAGGCAAGTGCCCGCACCGC AAGGTCAAGAAGCGCCGCCTCTCGCACAAG ACGGCCCGCCGAGGCAAGTTCCTCGTCAAGGCCGACGA CGCCGTCTACGACGAGCTGGTCAAGCTCGCCGACGCCGGCAAGGACGCCGACGCTA CCCAGCTCCCCGT CGACGAGGACC TCCCCGGTATGGGACAGTTCTACTGCCTCCAC TGCGATCGCTAC TTTGCAAG TNAGANTNTCAAGGAGGAGCACTA CCGC TCAAAGCGGCCACAAGAAAAGGATCAAGCAAAATGTCAGGGCCAG CCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BM419994             [                                                                         gaGCAAGTGCCCGCACCGC AAGGTCAAGAAGC CCGCCTCTCGCACAAG ACGGCCCGCCGAGGCAAGTTCCTCGTCAAGGCCGACGA CGCCGTCTACGACGAGCTGGTCAAGCTCGCCGACGCCGGCAAGGACGCCGACGCTA CCCAGCTCCCCGT CGACGAGGACC TCCCCGGTATGGGACAGTTCTACTGCCTCCAC TGCGATCGCTAC TTTGCAAG TGAGAGTGTCAAGGAGGAGCACTA CCGC TCAAAGC GCCACAAGAAAAGGATCAAGC AAATGTCAGGGCCAG CCCCACATACTCAACTTGATGCAGAGCTTGCTGC TGGAAT GGGGATGCCTGACAATGGCCTGAAGCTCATGTCCATGTGAACCTCTTCTTGTT CCTGGTTTTTACTCTTATATG TTTTTGTCACT CCGTACGTATGTACTTGCTCTGCTTAGTAGTTAATGGA TTGAGTTGATGGTGTCTGTTGGTCCAAGAATTTACTTTTAAGAAGCCAAGGGTTACTCTGTTTTGCCTGCCTCAAAAAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BE040001             [                                                                                   CCGCACCGCGGAGGGCAAGAAGCGCCGCCTCTCGCACAAG ACGGCCCGCCGAGGCAAGTTCCTCGTCAAGGCCGACGA CGCCGTCTACGACGAGCTGGTCAAGCTCGCCGACGCCGGCAAGGACGCCGACGCTA CCCAGCTCCCCGT CGACGAGGACC TCCCCGGTATGGGACAGTTCTACTGCCTCCAC TGCGATCGCTAC TTTGCAAG TGAGAGTGTCAAGGAGGAGCACTA CCGC TCAAAGC GCCACAAGAAAAGGATCAAGC AAATGTCAGGGCCAG CCCCACATACTCAACTTGATGCAGAGCTTGCTGC TGGAAT GGGGATGCCTGACAATGGCCTGAAGCTCATGTCCATGTGAACCTCTTCTTGTT CCTGGTTTTTACTCTTATATG TTTTTGTCACTGCCGTACGTATGTACTTGCTCTGCTTAGTAGTTAATGGAGTTGAGTTGATGGTGTCTGTTGGTCCAAGAATTTACTTTTAAGAAGCCAAGGGTTACTCTGGTTTGCCTGCCTCATTTTGGCTCGCTTTTGATTGAATATCAGTTACCTCAATCCAGGGCTTGGGATCAAAACCTGTTATTGGGTTAAAAAAAAAAAAAGAAACTCGGTGGGGGCCCGGGCCCAATGCCGCCTATGTGAGTGGATGGCTCCGCTCATGGGACGGGGTTTCAACGGGGAACTGGGAAACCGTGGGGGGCCCGCTTAATGTGTGTGGAGGATGCCGTTGGTGATGGGGGGTGAGGAAAGGGCGGACGGTGGCCCTCCCACATTAGGTCTGCTGATGTGAGGGGGCGCGCCGGGACGAGAGTCTACGCCTGGGTGGAGGGGTGCTGCTGGGATCTGGATGTGTGGAGCGGTGTCGAATGTTGAATTTATCTTGTTGGGTATTTGAAGATAGACAAGAGTGCTCGAGGTTCTATGTGCCGGTGGCTCGGGGAGTCAAGATATGGGGGTGTCAGGTGCGAG]
[+] EMBL AU161124             [                                                                                                              CCTCTCGCACAAGAACGGCCCGCCGAGGCAAGTTCCTCGTAAAGGCCGACGACCGCCNTCTACGACGAGCTGGTNAAGCTCGCCGACGCCGGNAAGGACGCCGACGCTA CCCAGCTCCCCGT CGACGAGGACC TCCCCGGTATGGGACAGTTCTACTGCCNCCAC TGCGATCGCTAC TTTGCAAG TGAGAGTGTNAAGGAGGAGCACTA CCGC TCAAAGC GCCACAAGAAAAGGATCAAGC AAATGTCAGGGCCAG CCCCACATACTCAACTTGATGCAGAGCTTGCTGC TGGAAT GGGGATGCCTGACAATGGCCTGAAGCTCATGTCCATGTGAACCTCTTCTTGTT CCTGGTTTTTACTC  ATATG TTTTTGTCACTGCCGTACGTATGTACTTGCTCTGCTTAGTAGTTAATGGAGTTGACTTGATGGTGTCTGTTGGTCCAAGAATTTACTTTTAAGAAGCCAAGGGTTACTCTGTTTTGCCTGCCTCAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU029900             [                                                                                                                                                                                               GCCGACGCCGGCAAGGACGCCGACGTTACCCCAGTTCCCCNTCCGACGAGGACT TCCCCGGTATGGGACAGTTCTACTGCCTCCAC TGCGATCGCTAC TTTGCAAG TGAGAGTNTCAAGGAGGAGCACTACCCGC TCAAAGC GCCACAAGAAAAGGATCAAGC AAATGTCAGGGCCAGCCCCCACATACTCAACTTGATGCAGAGCTTGCTGC TGGAATGGGGGATGCCTGACAATGGCCTGAAGCTCATGTCCATGTGAACCTCTTCTTGTT CCTGGTTTTTACTC  ATATG TTTTTGTCACTGCCGTACGTATGTACTTGCTCTGCTTAGTAGTTAATGGAGTTGACTTGATGGTGTCTGTTGGTCCAAGAATTTACTTTTAAGAAGCCAAGGGTTACTCTGTTTTGCCTGCCTCAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]


>consensus_14303#0 CTCTTCTCCGGGTCTAGGGTTTGCTGCTCCCCCTCCCCGCCGCCGCCGCCTCCGCCTCCG CCGCTCAGATGGGAGGCAAGTGCCCGCACCGCAAGGTCAAGAAGCGCCGCCTCTCGCACA AGACGGCCCGCCGAGGCAAGTTCCTCGTCAAGGCCGACGACGCCGTCTACGACGAGCTGG TCAAGCTCGCCGACGCCGGCAAGGACGCCGACGCTACCCAGCTCCCCGTCGACGAGGACC TCCCCGGTATGGGACAGTTCTACTGCCTCCACTGCGATCGCTACTTTGCAAGTGAGAGTG TCAAGGAGGAGCACTACCGCTCAAAGCGCCACAAGAAAAGGATCAAGCAAATGTCAGGGC CAGCCCCACATACTCAACTTGATGCAGAGCTTGCTGCTGGAATGGGGATGCCTGACAATG GCCTGAAGCTCATGTCCATGTGAACCTCTTCTTGTTCCTGGTTTTTACTCATATGTTTTT GTCACTGCCGTACGTATGTACTTGCTCTGCTTAGTAGTTAATGGAGTTGAGTTGATGGTG TCTGTTGGTCCAAGAATTTACTTTTAAGAAGCCAAGGGTTACTCTGTTTTGCCTGCCTCA AAAAAAAAAGCTTTTGATTGAATATCAGTTACCTCAATCCAGGGCTTGGGATCAAAACCT GTTATTGGGTTAAAAAAAAAAAAAGAAACTCGGTGGGGGCCCGGGCCCAATGCCGCCTAT GTGAGTGGATGGCTCCGCTCATGGGACGGGGTTTCAACGGGGAACTGGGAAACCGTGGGG GGCCCGCTTAATGTGTGTGGAGGATGCCGTTGGTGATGGGGGGTGAGGAAAGGGCGGACG GTGGCCCTCCCACATTAGGTCTGCTGATGTGAGGGGGCGCGCCGGGACGAGAGTCTACGC CTGGGTGGAGGGGTGCTGCTGGGATCTGGATGTGTGGAGCGGTGTCGAATGTTGAATTTA TCTTGTTGGGTATTTGAAGATAGACAAGAGTGCTCGAGGTTCTATGTGCCGGTGGCTCGG GGAGTCAAGATATGGGGGTGTCAGGTGCGAG



consensusID : consensus_14303#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 661
fasta sequence
                              [TCGGTTTTTTTTTTTTTTTTTTTTTGTCACTGCCGTACGTATGTACTTGCTCTGCTTAGTAGTTAATGGAGTTGAGTTGATGGTGTCTGTTGGTCCAAGAATTTACTTTTAAGAAGCCAAGGGTTACTCTGTTTTGCCTGCCTCATTTTGTCTCGCTTCTGATTGGGAATATGCGAGTGTTACNCCTTCAGTTCAGGTGCCTTTGGGGATCAAACGTCTTTTATTGGGTTTATTTGGGCCATTGGGGGCCTCCTTTCCGGCGGTCCGGCCGGTCCCCCTCTTGTGTTCCTTCCCCGTCCCCCCCTTCTCCCTCTTTGGGAGCGGGACAGGTTCTTCCTCTCAAACAAAAAGGAGCTGGGAGGGGGGGGGGGGGGCTTCTTTAGTGTGACGCGGGGCAATGTGGGGCATATGTGTTTTTCTTTTTGCCGCCCGCCCTGCATGAGCACCCGGGCTCTTCGTTGTTGGCGGGGCGGGGCCCCCCCCGCCCTCCCTCATCCGGGAGGCCGCGCGCGCGGCTATAACCCCATTTACGCTCTTCCCCTCCCTAATATTCTCCACGGGGCGGTGGCGGGGGAACGGGGGTCCGTACGCGACTTCGGTGGTTAGCATCGGGCGGAACCCTAGAAGGGGTATGTTTGACAGATCGCGGGCCCGTCGCTCC]

[+] EMBL CA757294             [TCGGTTTTTTTTTTTTTTTTTTTTTGTCACTGCCGTACGTATGTACTTGCTCTGCTTAGTAGTTAATGGAGTTGAGTTGATGGTGTCTGTTGGTCCAAGAATTTACTTTTAAGAAGCCAAGGGTTACTCTGTTTTGCCTGCCTCATTTTGTCTCGCTTCTGATTGGGAATATGCGAGTGTTACNCCTTCAGTTCAGGTGCCTTTGGGGATCAAACGTCTTTTATTGGGTTTATTTGGGCCATTGGGGGCCTCCTTTCCGGCGGTCCGGCCGGTCCCCCTCTTGTGTTCCTTCCCCGTCCCCCCCTTCTCCCTCTTTGGGAGCGGGACAGGTTCTTCCTCTCAAACAAAAAGGAGCTGGGAGGGGGGGGGGGGGGCTTCTTTAGTGTGACGCGGGGCAATGTGGGGCATATGTGTTTTTCTTTTTGCCGCCCGCCCTGCATGAGCACCCGGGCTCTTCGTTGTTGGCGGGGCGGGGCCCCCCCCGCCCTCCCTCATCCGGGAGGCCGCGCGCGCGGCTATAACCCCATTTACGCTCTTCCCCTCCCTAATATTCTCCACGGGGCGGTGGCGGGGGAACGGGGGTCCGTACGCGACTTCGGTGGTTAGCATCGGGCGGAACCCTAGAAGGGGTATGTTTGACAGATCGCGGGCCCGTCGCTCC]


>consensus_14303#1 TCGGTTTTTTTTTTTTTTTTTTTTTGTCACTGCCGTACGTATGTACTTGCTCTGCTTAGT AGTTAATGGAGTTGAGTTGATGGTGTCTGTTGGTCCAAGAATTTACTTTTAAGAAGCCAA GGGTTACTCTGTTTTGCCTGCCTCATTTTGTCTCGCTTCTGATTGGGAATATGCGAGTGT TACNCCTTCAGTTCAGGTGCCTTTGGGGATCAAACGTCTTTTATTGGGTTTATTTGGGCC ATTGGGGGCCTCCTTTCCGGCGGTCCGGCCGGTCCCCCTCTTGTGTTCCTTCCCCGTCCC CCCCTTCTCCCTCTTTGGGAGCGGGACAGGTTCTTCCTCTCAAACAAAAAGGAGCTGGGA GGGGGGGGGGGGGGCTTCTTTAGTGTGACGCGGGGCAATGTGGGGCATATGTGTTTTTCT TTTTGCCGCCCGCCCTGCATGAGCACCCGGGCTCTTCGTTGTTGGCGGGGCGGGGCCCCC CCCGCCCTCCCTCATCCGGGAGGCCGCGCGCGCGGCTATAACCCCATTTACGCTCTTCCC CTCCCTAATATTCTCCACGGGGCGGTGGCGGGGGAACGGGGGTCCGTACGCGACTTCGGT GGTTAGCATCGGGCGGAACCCTAGAAGGGGTATGTTTGACAGATCGCGGGCCCGTCGCTC C



consensusID : consensus_14303#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 423
fasta sequence
                              [GTCAAGCTCGCCGACGCCGGCAAGGACGCCGAACGCTACCCAGCTCCCCGTCGACGAGGACCTCCCCCGGTATGGGACAGTTTTACTGCCTCCACTGCGATCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAGAGCGCCACAAGAAAAGGATCAAGCAAATGTCAGGGCCAGCCCCCACATACTCAACTTGATGCAGAGCTTGCTGCTGGAATGGGGATGCCTGACAATGGCCTGAAGCTCATGTCCATGTGAACCTCTTCTTGTTCCTGGTTTTTACTCATATGTTTTTGTCACTGCCGTACGTATGTACTTGCTCTGCTTAGTAGTTAATGGAGTTGACTTGATGGTGTCTGTTGGTCCAAGAATTTACTTTTAAGAAGCCAAGGGTTACTCTGTTTAAAAAAAAAA]

[-] EMBL CF336333             [GTCAAGCTCGCCGACGCCGGCAAGGACGCCGAACGCTACCCAGCTCCCCGTCGACGAGGACCTCCCCCGGTATGGGACAGTTTTACTGCCTCCACTGCGATCGCTACTTTGCAAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAGAGCGCCACAAGAAAAGGATCAAGCAAATGTCAGGGCCAGCCCCCACATACTCAACTTGATGCAGAGCTTGCTGCTGGAATGGGGATGCCTGACAATGGCCTGAAGCTCATGTCCATGTGAACCTCTTCTTGTTCCTGGTTTTTACTCATATGTTTTTGTCACTGCCGTACGTATGTACTTGCTCTGCTTAGTAGTTAATGGAGTTGACTTGATGGTGTCTGTTGGTCCAAGAATTTACTTTTAAGAAGCCAAGGGTTACTCTGTTTAAAAAAAAAA]
[+] EMBL CF328464             [                                                                                                                                                                                                                                cacgaGGATGCCTGACAATGGCCTGAAGCTCATGTCCATGTGAACCTCTTCTTGTTCCTGGTTTTTACTCATATGTTTTTGTCACTGCCGTACGTATGTACTTGCTCTGCTTAGTAGTTAATGGAGTTGACTTGATGGTGTCTGTTGGTCCAAGAATTTACTTTTAAGAAGCCAAGGGTTACTC               ]


>consensus_14303#2 GTCAAGCTCGCCGACGCCGGCAAGGACGCCGAACGCTACCCAGCTCCCCGTCGACGAGGA CCTCCCCCGGTATGGGACAGTTTTACTGCCTCCACTGCGATCGCTACTTTGCAAGTGAGA GTGTCAAGGAGGAGCACTACCGCTCAGAGCGCCACAAGAAAAGGATCAAGCAAATGTCAG GGCCAGCCCCCACATACTCAACTTGATGCAGAGCTTGCTGCTGGAATGGGGATGCCTGAC AATGGCCTGAAGCTCATGTCCATGTGAACCTCTTCTTGTTCCTGGTTTTTACTCATATGT TTTTGTCACTGCCGTACGTATGTACTTGCTCTGCTTAGTAGTTAATGGAGTTGACTTGAT GGTGTCTGTTGGTCCAAGAATTTACTTTTAAGAAGCCAAGGGTTACTCTGTTTAAAAAAA AAA



consensusID : consensus_14303#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 381
fasta sequence
                              [ATACNGACNTCACNTATAGTGGCGAANTTGNGTGTACCGGGCCCCCCCNTCGANGGNTCGACCCACGCGGTCCGGCCGAGGCAAGTTCCTCGTCAAGGCCGNACGACGCCGTCTACGACGAGCTGGGTCAAGCTCGCCNGACGCCGGCNAAGGACTGCCGACTGCTACCCNAGCTCCCCCGTCGGACGAGNGACCTTNCCCGGTTATGGGGACAGTTTCTACTTGCCTTCCACTTGCGNATCGGCTACTTTTGGCAAGGTGNAGANNTNTTCAAGGGAGGGAGGCAACTAACCGGCTTCAAAAGCGGCCCACAAAGGAAAAAGGGATTCAAAGNCAAAATNGTCAAGGGGNCCAGGCCCCCACCATTACTTCAAACTTTTG]

[+] EMBL OSC24111             [ATACNGACNTCACNTATAGTGGCGAANTTGNGTGTACCGGGCCCCCCCNTCGANGGNTCGACCCACGCGGTCCGGCCGAGGCAAGTTCCTCGTCAAGGCCGNACGACGCCGTCTACGACGAGCTGGGTCAAGCTCGCCNGACGCCGGCNAAGGACTGCCGACTGCTACCCNAGCTCCCCCGTCGGACGAGNGACCTTNCCCGGTTATGGGGACAGTTTCTACTTGCCTTCCACTTGCGNATCGGCTACTTTTGGCAAGGTGNAGANNTNTTCAAGGGAGGGAGGCAACTAACCGGCTTCAAAAGCGGCCCACAAAGGAAAAAGGGATTCAAAGNCAAAATNGTCAAGGGGNCCAGGCCCCCACCATTACTTCAAACTTTTG]


>consensus_14303#3 ATACNGACNTCACNTATAGTGGCGAANTTGNGTGTACCGGGCCCCCCCNTCGANGGNTCG ACCCACGCGGTCCGGCCGAGGCAAGTTCCTCGTCAAGGCCGNACGACGCCGTCTACGACG AGCTGGGTCAAGCTCGCCNGACGCCGGCNAAGGACTGCCGACTGCTACCCNAGCTCCCCC GTCGGACGAGNGACCTTNCCCGGTTATGGGGACAGTTTCTACTTGCCTTCCACTTGCGNA TCGGCTACTTTTGGCAAGGTGNAGANNTNTTCAAGGGAGGGAGGCAACTAACCGGCTTCA AAAGCGGCCCACAAAGGAAAAAGGGATTCAAAGNCAAAATNGTCAAGGGGNCCAGGCCCC CACCATTACTTCAAACTTTTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14303#0      ------CTCTTCTCCGGGTCTAGGGTTTGCTGCTCCCCCTCCCCGCCGCCGCCGCCTCCG 54
consensus_14303#2      ------------------------------------------------------------
consensus_14303#3      ------------------------------------------------------------
consensus_14303#1      TCGGTTTTTTTTTTTTTTTTTTTTTGTCACTGCCGTACGTATGTACTTGCTCTGCTTAGT 60
                                                                                   

consensus_14303#0      CCTCCGCCGCTCAGATGGGAGGCAAGTGCCCGCACCGCAAGGTCAAGAAGCGCCGCCTCT 114
consensus_14303#2      ------------------------------------------------------------
consensus_14303#3      ------------------------------------------------------------
consensus_14303#1      AGTTAATGGAGTTGAGTTGATGGTGTCTGTTGGTCCAAGAATTTACTTTTAAGAAGCCAA 120
                                                                                   

consensus_14303#0      CGCACAAGACGGCCCGCCGAGGCAAGTTCCTCGTCAAGGCCGACGACGCCGTCTACGACG 174
consensus_14303#2      ------------------------------------------------------------
consensus_14303#3      ------------------------------------------------------------
consensus_14303#1      GGGTTACTCTGTTTTGCCTGCCTCATTTTGTCTCGCTTCTGATTGGGAATATGCGAGTGT 180
                                                                                   

consensus_14303#0      AGCTGGTCAAGCTCGCCGACGCCGGCAAGGACGCCGA-CGCTACCCAGCTCCCCG---TC 230
consensus_14303#2      -----GTCAAGCTCGCCGACGCCGGCAAGGACGCCGAACGCTACCCAGCTCCCCG---TC 52
consensus_14303#3      ---ATACNGACNTCACNTATAGTGGCGAANTTGNGTG----TACCGGGCCCCCC-----C 48
consensus_14303#1      TACNCCTTCAGTTCAGGTGCCTTTGGGGATCAAACGTCTTTTATTGGGTTTATTTGGGCC 240
                                *  **          *                **    *           *

consensus_14303#0      GACGAGGACCTCCCC-GGTATGGGACAGTTCTACTGCCTCCACTGCGATCGCTACTTTGC 289
consensus_14303#2      GACGAGGACCTCCCCCGGTATGGGACAGTTTTACTGCCTCCACTGCGATCGCTACTTTGC 112
consensus_14303#3      NTCGANGGNTCGACC------CACGCGGTCCGGCCGAGGCAAGTTCC-TCGTCAAGGC-C 100
consensus_14303#1      ATTGGGGGCCTCCTT-----TCCGGCGGTCCGGCCGGTCCCCCTCTTGT-GTTCCTTCCC 294
                          *  *                  * **    * *   *   *    * *        *

consensus_14303#0      AAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAAAGCGCCACAAGAAAAGGATCAAGCA 349
consensus_14303#2      AAGTGAGAGTGTCAAGGAGGAGCACTACCGCTCAGAGCGCCACAAGAAAAGGATCAAGCA 172
consensus_14303#3      GNACGACGCCGTCTACGACGAGC----TGGGTCA-AGC-TCGCCNGACGCCGGCNAAG-G 153
consensus_14303#1      CGTCCCCCCCTTCTCCCTCTTTGGGAGCGGGACAGGTTCTTCCTCTCAAACAAAAAGGAG 354
                                  **                *  **        *            * *  

consensus_14303#0      AATGTCAGGGCCAGCCCC-ACATACTCAACTTGATGCAGAGCTTGCTGCTGG-AATGGGG 407
consensus_14303#2      AATGTCAGGGCCAGCCCCCACATACTCAACTTGATGCAGAGCTTGCTGCTGG-AATGGGG 231
consensus_14303#3      ACTGCCGACTGCTACCCN-AGCTCCCCCGTCGGACGAGNGACCTTNCCCGGT-TATGGGG 211
consensus_14303#1      CTGGGAGGGGGGGGGGGGGGCTTCTTTAGTGTGACGCGGGGCAATGTGGGGCATATGTGT 414
                          *                  *         ** *     *        *   *** * 

consensus_14303#0      ATGCCTGACAATGGCCTGAAGCTCATGTCCATGTGAACCTCTTCTTGTTCC-TGGTTTTT 466
consensus_14303#2      ATGCCTGACAATGGCCTGAAGCTCATGTCCATGTGAACCTCTTCTTGTTCC-TGGTTTTT 290
consensus_14303#3      ACAGTTTCTACTTGCCT----TCCACTTGCGNATCGGCTACTTTTGGCAAG-GTGNAGAN 266
consensus_14303#1      TTTTCTTTTTGCCGCCCGCCCTGCATGAGCACCCGGGCTCTTCGTTGTTGGCGGGGCGGG 474
                            *       ***       **    *       *   *  * *       *     

consensus_14303#0      ACTCATATGTTTTTGTCACTGCCGTACGTATGTACTTGCTCTGCTTAGTAGTTAATGGAG 526
consensus_14303#2      ACTCATATGTTTTTGTCACTGCCGTACGTATGTACTTGCTCTGCTTAGTAGTTAATGGAG 350
consensus_14303#3      NTNTTCAAGGGAGGGAGGCAACTAACCGGCTTCAAAAGCGGCCCACAAAGGAAAAAGGGA 326
consensus_14303#1      GCCCCCCCCGCCCTCCCTCATCCGGGAGGCCGCGCGCGCGGCTATAACCCCATTTACGCT 534
                                         *  *     *         **       *          *  

consensus_14303#0      TT-----GAGTTGATGGTGTCTGTTGGTCCAAGAATTTACTTTTAAGAAGCCAAGGGTTA 581
consensus_14303#2      TT-----GACTTGATGGTGTCTGTTGGTCCAAGAATTTACTTTTAAGAAGCCAAGGGTTA 405
consensus_14303#3      TTCA---AAGNCAAAATNGTCAAGGGGNCCAGGCCCCCACCATTACT---TCAAACTTTT 380
consensus_14303#1      CTTCCCCTCCCTAATATTCTCCACGGGGCGGTGGCGGGGGAACGGGGGT-CCGTACGCGA 593
                        *           *     **    ** *   *                  *        

consensus_14303#0      CTCTGTTTTGCCTGCCTCAAAAAAAAAAGCTTTTGATTGAATATCAGTTACCTCAATCCA 641
consensus_14303#2      CTCTGTTT----------AAAAAAAAAA-------------------------------- 423
consensus_14303#3      G----------------------------------------------------------- 381
consensus_14303#1      CTTCGGTGGTTAGCATCGGGCGGAACCCTAGAAGGGGTATGTTTGACAGATCGCGGGCCC 653
                                                                                   

consensus_14303#0      GGGCTTGGGATCAAAACCTGTTATTGGGTTAAAAAAAAAAAAAGAAACTCGGTGGGGGCC 701
consensus_14303#2      ------------------------------------------------------------
consensus_14303#3      ------------------------------------------------------------
consensus_14303#1      GTCGCTCC---------------------------------------------------- 661
                                                                                   

consensus_14303#0      CGGGCCCAATGCCGCCTATGTGAGTGGATGGCTCCGCTCATGGGACGGGGTTTCAACGGG 761
consensus_14303#2      ------------------------------------------------------------
consensus_14303#3      ------------------------------------------------------------
consensus_14303#1      ------------------------------------------------------------
                                                                                   

consensus_14303#0      GAACTGGGAAACCGTGGGGGGCCCGCTTAATGTGTGTGGAGGATGCCGTTGGTGATGGGG 821
consensus_14303#2      ------------------------------------------------------------
consensus_14303#3      ------------------------------------------------------------
consensus_14303#1      ------------------------------------------------------------
                                                                                   

consensus_14303#0      GGTGAGGAAAGGGCGGACGGTGGCCCTCCCACATTAGGTCTGCTGATGTGAGGGGGCGCG 881
consensus_14303#2      ------------------------------------------------------------
consensus_14303#3      ------------------------------------------------------------
consensus_14303#1      ------------------------------------------------------------
                                                                                   

consensus_14303#0      CCGGGACGAGAGTCTACGCCTGGGTGGAGGGGTGCTGCTGGGATCTGGATGTGTGGAGCG 941
consensus_14303#2      ------------------------------------------------------------
consensus_14303#3      ------------------------------------------------------------
consensus_14303#1      ------------------------------------------------------------
                                                                                   

consensus_14303#0      GTGTCGAATGTTGAATTTATCTTGTTGGGTATTTGAAGATAGACAAGAGTGCTCGAGGTT 1001
consensus_14303#2      ------------------------------------------------------------
consensus_14303#3      ------------------------------------------------------------
consensus_14303#1      ------------------------------------------------------------
                                                                                   

consensus_14303#0      CTATGTGCCGGTGGCTCGGGGAGTCAAGATATGGGGGTGTCAGGTGCGAG 1051
consensus_14303#2      --------------------------------------------------
consensus_14303#3      --------------------------------------------------
consensus_14303#1      --------------------------------------------------
                                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)