cluster # 1431

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1431 cluster # 1431 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1431#0 length = 1180 sequences # 1

consensus_1431#1 length = 267 sequences # 1

consensusID : consensus_1431#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1180
fasta sequence

                              [TGGCGCTACTTCTTCCCTCTGCTCTTGTTGCTGAGTGCACATGTATATATCAAATCCATCAGTGCCTGAATTGAAGTGACAGACTAGAGAATCAACAATACAACTGCGGTACTAACCTTCATATGGTGTCTGGCCTATGGATCTTTGATCAATGGCAGAATCTTGCCACATCGTCGACGGCGCACGGTGAGCCCTACTCCCAGATCTTCCTCCTGTTTCATGTGCATTCTCCATCCTGGCGCCATGAAGCGCAGGTGCAAATGCGAACGCACTCCTCCTGACGCCGCCATGGCTACCGGCCTCTTCTCTCGACGGAGTACCGGACGCGTGCCTGATGCTGAACGTCCCGACGCCGCCCGGTAGCACGTGCTCCTCCGAGTCCGAACCTGCCGGCGACGCGCCGTCGACGGCACTCCCCGCCGCCGTGCCATTGCCGCTGCTGCGGCCGCGCTGCTTGGCCAGGTCCAGTGGCCTCAGTGATCTGCGGATCTCCATACCGTATCCTGCACTTGACATGGGTAACATGGGTTAGCAAGTTGGTGCATTGCTGTCTAACTTGCACACCATGGCACTTGCAGTTGAGAAGGCAAAGGAGAGGGCGGTGCAGACAGCTCACCTCGCGATGAATGGCTGGAATGCTGCTCCTCCCGGTGCTGGAACGGCGGCGACGACGAGCCGCCGCCGGCGCGGAGCGAGAGGAAGTCATGAGCCGGCTCCTCTCCTGCGAATCACCGACAAGCACAACACAACACACGGCAATGTACCATGAGCTGATGAGCATCATGCGGTGAAGAGAGAAGACGCTGTGGAATTGGAGGAAGGAAGGAAAGGACACTAGGGTGAAGTGTAATTCTCTTTGATACCTTGGAAAAGCTGCATTGGCGCCCGGGACACAGGACACTGGAGATCTGTCGACGCTGCTGCCAAGCCGAGCGGCCTGCCGTTGCAGCAGAAAGATGGCGCCTGGATCTTGCCGCTGGGCAGTACACTGATGGAATGTAGCGAATTCGGTTGTCCACTCGGACCTTATTATAGTCGGCTAAGAGAGAGTCGAGAAGGATAGGAGACTGATAATGATATAACAAATAAGCTAGGGAGGTAAGCCCTGCTGCCTGCCGCCTCCCTGCCTGTCTGGCTGGTAGTATTATACTTTGTACCTTTGATATAACAAACGTTTCAT]

[+] EMBL AK064674             [TGGCGCTACTTCTTCCCTCTGCTCTTGTTGCTGAGTGCACATGTATATATCAAATCCATCAGTGCCTGAATTGAAGTGACAGACTAGAGAATCAACAATACAACTGCGGTACTAACCTTCATATGGTGTCTGGCCTATGGATCTTTGATCAATGGCAGAATCTTGCCACATCGTCGACGGCGCACGGTGAGCCCTACTCCCAGATCTTCCTCCTGTTTCATGTGCATTCTCCATCCTGGCGCCATGAAGCGCAGGTGCAAATGCGAACGCACTCCTCCTGACGCCGCCATGGCTACCGGCCTCTTCTCTCGACGGAGTACCGGACGCGTGCCTGATGCTGAACGTCCCGACGCCGCCCGGTAGCACGTGCTCCTCCGAGTCCGAACCTGCCGGCGACGCGCCGTCGACGGCACTCCCCGCCGCCGTGCCATTGCCGCTGCTGCGGCCGCGCTGCTTGGCCAGGTCCAGTGGCCTCAGTGATCTGCGGATCTCCATACCGTATCCTGCACTTGACATGGGTAACATGGGTTAGCAAGTTGGTGCATTGCTGTCTAACTTGCACACCATGGCACTTGCAGTTGAGAAGGCAAAGGAGAGGGCGGTGCAGACAGCTCACCTCGCGATGAATGGCTGGAATGCTGCTCCTCCCGGTGCTGGAACGGCGGCGACGACGAGCCGCCGCCGGCGCGGAGCGAGAGGAAGTCATGAGCCGGCTCCTCTCCTGCGAATCACCGACAAGCACAACACAACACACGGCAATGTACCATGAGCTGATGAGCATCATGCGGTGAAGAGAGAAGACGCTGTGGAATTGGAGGAAGGAAGGAAAGGACACTAGGGTGAAGTGTAATTCTCTTTGATACCTTGGAAAAGCTGCATTGGCGCCCGGGACACAGGACACTGGAGATCTGTCGACGCTGCTGCCAAGCCGAGCGGCCTGCCGTTGCAGCAGAAAGATGGCGCCTGGATCTTGCCGCTGGGCAGTACACTGATGGAATGTAGCGAATTCGGTTGTCCACTCGGACCTTATTATAGTCGGCTAAGAGAGAGTCGAGAAGGATAGGAGACTGATAATGATATAACAAATAAGCTAGGGAGGTAAGCCCTGCTGCCTGCCGCCTCCCTGCCTGTCTGGCTGGTAGTATTATACTTTGTACCTTTGATATAACAAACGTTTCAT]




>consensus_1431#0
TGGCGCTACTTCTTCCCTCTGCTCTTGTTGCTGAGTGCACATGTATATATCAAATCCATC
AGTGCCTGAATTGAAGTGACAGACTAGAGAATCAACAATACAACTGCGGTACTAACCTTC
ATATGGTGTCTGGCCTATGGATCTTTGATCAATGGCAGAATCTTGCCACATCGTCGACGG
CGCACGGTGAGCCCTACTCCCAGATCTTCCTCCTGTTTCATGTGCATTCTCCATCCTGGC
GCCATGAAGCGCAGGTGCAAATGCGAACGCACTCCTCCTGACGCCGCCATGGCTACCGGC
CTCTTCTCTCGACGGAGTACCGGACGCGTGCCTGATGCTGAACGTCCCGACGCCGCCCGG
TAGCACGTGCTCCTCCGAGTCCGAACCTGCCGGCGACGCGCCGTCGACGGCACTCCCCGC
CGCCGTGCCATTGCCGCTGCTGCGGCCGCGCTGCTTGGCCAGGTCCAGTGGCCTCAGTGA
TCTGCGGATCTCCATACCGTATCCTGCACTTGACATGGGTAACATGGGTTAGCAAGTTGG
TGCATTGCTGTCTAACTTGCACACCATGGCACTTGCAGTTGAGAAGGCAAAGGAGAGGGC
GGTGCAGACAGCTCACCTCGCGATGAATGGCTGGAATGCTGCTCCTCCCGGTGCTGGAAC
GGCGGCGACGACGAGCCGCCGCCGGCGCGGAGCGAGAGGAAGTCATGAGCCGGCTCCTCT
CCTGCGAATCACCGACAAGCACAACACAACACACGGCAATGTACCATGAGCTGATGAGCA
TCATGCGGTGAAGAGAGAAGACGCTGTGGAATTGGAGGAAGGAAGGAAAGGACACTAGGG
TGAAGTGTAATTCTCTTTGATACCTTGGAAAAGCTGCATTGGCGCCCGGGACACAGGACA
CTGGAGATCTGTCGACGCTGCTGCCAAGCCGAGCGGCCTGCCGTTGCAGCAGAAAGATGG
CGCCTGGATCTTGCCGCTGGGCAGTACACTGATGGAATGTAGCGAATTCGGTTGTCCACT
CGGACCTTATTATAGTCGGCTAAGAGAGAGTCGAGAAGGATAGGAGACTGATAATGATAT
AACAAATAAGCTAGGGAGGTAAGCCCTGCTGCCTGCCGCCTCCCTGCCTGTCTGGCTGGT
AGTATTATACTTTGTACCTTTGATATAACAAACGTTTCAT

consensusID : consensus_1431#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 267
fasta sequence

                              [GGCGCTACTTCTTCCCTCTGCTCTTGTTGCTTCATATGGTGTCTGGCCTATGGATCTTTGATCAATGGCAGAATCTTGCCACATCGTCGACGGCGCACGGTGAGCCCTACTCCCAGATCTTCCTCCTGTTTCATGTGCATTCTCCATCCTGGCGCCATGAAGCGCAGGTGCAAATGCGAACGCACTCCTCCTGACGCCGCCATGGCTACCGGCCTCTTCTCTCGACGGAGTACCGGACGCGTGCCTGATGCTGAACGTCCCGACGCC]

[-] EMBL CF323574             [GGCGCTACTTCTTCCCTCTGCTCTTGTTGCTTCATATGGTGTCTGGCCTATGGATCTTTGATCAATGGCAGAATCTTGCCACATCGTCGACGGCGCACGGTGAGCCCTACTCCCAGATCTTCCTCCTGTTTCATGTGCATTCTCCATCCTGGCGCCATGAAGCGCAGGTGCAAATGCGAACGCACTCCTCCTGACGCCGCCATGGCTACCGGCCTCTTCTCTCGACGGAGTACCGGACGCGTGCCTGATGCTGAACGTCCCGACGCC]




>consensus_1431#1
GGCGCTACTTCTTCCCTCTGCTCTTGTTGCTTCATATGGTGTCTGGCCTATGGATCTTTG
ATCAATGGCAGAATCTTGCCACATCGTCGACGGCGCACGGTGAGCCCTACTCCCAGATCT
TCCTCCTGTTTCATGTGCATTCTCCATCCTGGCGCCATGAAGCGCAGGTGCAAATGCGAA
CGCACTCCTCCTGACGCCGCCATGGCTACCGGCCTCTTCTCTCGACGGAGTACCGGACGC
GTGCCTGATGCTGAACGTCCCGACGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1431#0      TGGCGCTACTTCTTCCCTCTGCTCTTGTTGCTGAGTGCACATGTATATATCAAATCCATC 60
consensus_1431#1      ------------------------------------------------------------
                                                                                  

consensus_1431#0      AGTGCCTGAATTGAAGTGACAGACTAGAGAATCAACAATACAACTGCGGTACTAAC-CTT 119
consensus_1431#1      ----------------------------GGCGCTACTTCTTCCCTCTGCTCTTGTTGCTT 32
                                                  *   * **       **  * *  *    ***

consensus_1431#0      CATATGGTGTCTGGCCTATGGATCTTTGATCAATGGCAGAATCTTGCCACATCGTCGACG 179
consensus_1431#1      CATATGGTGTCTGGCCTATGGATCTTTGATCAATGGCAGAATCTTGCCACATCGTCGACG 92
                      ************************************************************

consensus_1431#0      GCGCACGGTGAGCCCTACTCCCAGATCTTCCTCCTGTTTCATGTGCATTCTCCATCCTGG 239
consensus_1431#1      GCGCACGGTGAGCCCTACTCCCAGATCTTCCTCCTGTTTCATGTGCATTCTCCATCCTGG 152
                      ************************************************************

consensus_1431#0      CGCCATGAAGCGCAGGTGCAAATGCGAACGCACTCCTCCTGACGCCGCCATGGCTACCGG 299
consensus_1431#1      CGCCATGAAGCGCAGGTGCAAATGCGAACGCACTCCTCCTGACGCCGCCATGGCTACCGG 212
                      ************************************************************

consensus_1431#0      CCTCTTCTCTCGACGGAGTACCGGACGCGTGCCTGATGCTGAACGTCCCGACGCCGCCCG 359
consensus_1431#1      CCTCTTCTCTCGACGGAGTACCGGACGCGTGCCTGATGCTGAACGTCCCGACGCC----- 267
                      *******************************************************     

consensus_1431#0      GTAGCACGTGCTCCTCCGAGTCCGAACCTGCCGGCGACGCGCCGTCGACGGCACTCCCCG 419
consensus_1431#1      ------------------------------------------------------------
                                                                                  

consensus_1431#0      CCGCCGTGCCATTGCCGCTGCTGCGGCCGCGCTGCTTGGCCAGGTCCAGTGGCCTCAGTG 479
consensus_1431#1      ------------------------------------------------------------
                                                                                  

consensus_1431#0      ATCTGCGGATCTCCATACCGTATCCTGCACTTGACATGGGTAACATGGGTTAGCAAGTTG 539
consensus_1431#1      ------------------------------------------------------------
                                                                                  

consensus_1431#0      GTGCATTGCTGTCTAACTTGCACACCATGGCACTTGCAGTTGAGAAGGCAAAGGAGAGGG 599
consensus_1431#1      ------------------------------------------------------------
                                                                                  

consensus_1431#0      CGGTGCAGACAGCTCACCTCGCGATGAATGGCTGGAATGCTGCTCCTCCCGGTGCTGGAA 659
consensus_1431#1      ------------------------------------------------------------
                                                                                  

consensus_1431#0      CGGCGGCGACGACGAGCCGCCGCCGGCGCGGAGCGAGAGGAAGTCATGAGCCGGCTCCTC 719
consensus_1431#1      ------------------------------------------------------------
                                                                                  

consensus_1431#0      TCCTGCGAATCACCGACAAGCACAACACAACACACGGCAATGTACCATGAGCTGATGAGC 779
consensus_1431#1      ------------------------------------------------------------
                                                                                  

consensus_1431#0      ATCATGCGGTGAAGAGAGAAGACGCTGTGGAATTGGAGGAAGGAAGGAAAGGACACTAGG 839
consensus_1431#1      ------------------------------------------------------------
                                                                                  

consensus_1431#0      GTGAAGTGTAATTCTCTTTGATACCTTGGAAAAGCTGCATTGGCGCCCGGGACACAGGAC 899
consensus_1431#1      ------------------------------------------------------------
                                                                                  

consensus_1431#0      ACTGGAGATCTGTCGACGCTGCTGCCAAGCCGAGCGGCCTGCCGTTGCAGCAGAAAGATG 959
consensus_1431#1      ------------------------------------------------------------
                                                                                  

consensus_1431#0      GCGCCTGGATCTTGCCGCTGGGCAGTACACTGATGGAATGTAGCGAATTCGGTTGTCCAC 1019
consensus_1431#1      ------------------------------------------------------------
                                                                                  

consensus_1431#0      TCGGACCTTATTATAGTCGGCTAAGAGAGAGTCGAGAAGGATAGGAGACTGATAATGATA 1079
consensus_1431#1      ------------------------------------------------------------
                                                                                  

consensus_1431#0      TAACAAATAAGCTAGGGAGGTAAGCCCTGCTGCCTGCCGCCTCCCTGCCTGTCTGGCTGG 1139
consensus_1431#1      ------------------------------------------------------------
                                                                                  

consensus_1431#0      TAGTATTATACTTTGTACCTTTGATATAACAAACGTTTCAT 1180
consensus_1431#1      -----------------------------------------