These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14311#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1177 fasta sequence [GAGAAAAGGGAAGATACAAGTGTCATCCCGCATCCAACAACCATGGACTCCTTGTATGATATCTCCTGCTTTGCTGCTGGTCTTGCAGGCAACATCTTTGCGCTTGCTCTCTTCCTGTCGCCAGTGACGACGTTTAAGAGGATCCTGAAGGCCAAATCGACCGAGCGATTCGACGGGCTCCCTTACCTGTTCTCGCTGCTGAATTGCCTCATCTGCCTGTGGTATGGACTTCCCTGGGTCGCCGATGGCAGGCTGCTCGTCGCTACCGTCAACGGCATT-GG-AGCGGTGTTCCAGCTCGCCTAC-ATTTGCCTCTTC-ATCTTCTACGCGGACAGCAGGAAGACGAGGATGAAGATCATAGGGCTCTTGGTGCTGGTAGTTTGC-GGGTTTGCGCTAGTTTC-ACATGCGAGCGTC-TTTTTCTTTGATCAACCGCTTCGGCAGCAGTTTGTGGGAGCTGTGAGCATGGCTTCGCTGATCTCCATGTTCGCTTCTCCGTTAGC-TGT-CATGGGAGTTGTGATT-CGGTCAGAGTCTGTGGAGTTCATG-CCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCCAGTTTTGCATTGTATGGGTTGCTGCTGCGAGATTTCTTCATTTATTTCCCTAATGGGCTTGGACTTATCCTGGGAGCAATG-CAGCTGGCGCTCTACGCTTACTACAGCAGAAAATGGAGAGGCCA-GGATTCATCTGCA-CCGTTGCTGCTCGCATGATC-AAAACCGGAGTGAATGATTGATCGATCAGCTGGTTTTGCCATGGTTTGGATTCTTGAAAGAGTGGGTTTATGGTGAATTGTACAGTTTTGGCTCAGTCTTCACATGTTGGTACTGGAAGCTGTACTTCAAACTGCATTCTTCAAACATGTTGGAAAGTTTTGCACACCAGGGGGGCAAATGATGGA-TTTTTTTTAATTTGATTCCCTCCTTTTCCTTGAATACTTGGTGTGCAAAATTATTTCAGCTATGCACATTGAGCCTCACTTCTTGTTATCAATTATGACATGTCACATATGTATAAGTTGCGATGATAGTTTTGTTTCGTTGCTGTTTGTAAACTGCAATATTCTTCTCGCCAAACTGTGTGAACAACAAATCAATGGCCACGTCATATATGTACAAGTTGAGATGATAAAAAAAAAATAAAAAAAAAAAAAAA] [+] EMBL AK059965 [GAGAAAAGGGAAGATACAAGTGTCATCCCGCATCCAACAACCATGGACTCCTTGTATGATATCTCCTGCTTTGCTGCTGGTCTTGCAGGCAACATCTTTGCGCTTGCTCTCTTCCTGTCGCCAGTGACGACGTTTAAGAGGATCCTGAAGGCCAAATCGACCGAGCGATTCGACGGGCTCCCTTACCTGTTCTCGCTGCTGAATTGCCTCATCTGCCTGTGGTATGGACTTCCCTGGGTCGCCGATGGCAGGCTGCTCGTCGCTACCGTCAACGGCATT GG AGCGGTGTTCCAGCTCGCCTAC ATTTGCCTCTTC ATCTTCTACGCGGACAGCAGGAAGACGAGGATGAAGATCATAGGGCTCTTGGTGCTGGTAGTTTGC GGGTTTGCGCTAGTTTC ACATGCGAGCGTC TTTTTCTTTGATCAACCGCTTCGGCAGCAGTTTGTGGGAGCTGTGAGCATGGCTTCGCTGATCTCCATGTTCGCTTCTCCGTTAGC TGT CATGGGAGTTGTGATT CGGTCAGAGTCTGTGGAGTTCATG CCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCCAGTTTTGCATTGTATGGGTTGCTGCTGCGAGATTTCTTCATTTATTTCCCTAATGGGCTTGGACTTATCCTGGGAGCAATG CAGCTGGCGCTCTACGCTTACTACAGCAGAAAATGGAGAGGCCA GGATTCATCTGCA CCGTTGCTGCTCGCATGATC AAAACCGGAGTGAATGATTGATCGATCAGCTGGTTTTGCCATGGTTTGGATTCTTGAAAGAGTGGGTTTATGGTGAATTGTACAGTTTTGGCTCAGTCTTCACATGTTGGTACTGGAAGCTGTACTTCAAACTGCATTCTTCAAACATGTTGGAAAGTTTTGCACACCAGGGGGGCAAATGATGGATTTTTTTTTAATTTGATTCCCTCCTTTTCCTTGAATACTTGGTGTGCAAAATTATTTCAGCTATGCACATTGAGCCTCACTTCTTGTTATCAATTATGACATGTCACATATGTATAAGTTGCGATGATAGTTTTGTTTCGTTGCTGTTTGTAAACTGCAATATTCTTCTCGCCAAACTGTGTGAACAACAAATCAATGGCCACGTCATATATGTACAAG ] [+] EMBL CF309718 [ GAAAAGGGAAGATACAAGTGTCATCCCGCATCCAACAACCATGGACTCCTTGTATGATATCTCCTGCTTTGCTGCTGGTCTTGCAGGCAACATCTTTGCGCTTGCTCTCTTCCTGTCGCCAGTGACGACGTTTAAGAGGATCCTGAAGGCCAAATCGACCGAGCGATTCGACGGGCTCCCTTACCTGTTCTCGCTGCTGAATTGCCTCATCTGCCTGTGGTATGGACTTCCCTGGGTCGCCGATGGCAGGCTGCTCGTCGCTACCGTCAACGGCATTGGG AGCGGTGTTCCAGCTCGCCTAC ATTTGCCTCTTC ATCTTCTACGCGGACAGCAGGAAGACGAGGATGAAGATCATAGGGCACTTGGTGCTGGTAGTTTGC GGGTTTGCGCTAGTTTC ACATGCGAGCGTC TTTTTCTTTGATCAACCGCTTCGGCAGCAGTTTGTGGGA ] [+] EMBL CF292771 [ AGGGAAGATACAAGTGTCATCCCGCATCCAACAACCATGGACTCCTTGTATGATATCTCCTGCTTTGCTGCTGGTCTTGCAGGCAACATCTTTGCGCTTGCTCTCTTCCTGTCGCCAGTGACGACGTTTAAGAGGATCCTGAAGGCCAAATCGACCGAGCGATTCGACGGGCTCCCTTACCTGTTCTCGCTGCTGAATTGCCTCATCTGCCTGTGGTATGGACTTCCCTGGGTCGCCGATGGCAGGCTGCTCGTCGCTACCGTCAACGGCATT GG AGCGGTGTTCCAGCTCGCCTAC ATTTGCCTCTTC ATCTTCTACGCGGACAGCAGGAAGACGAGGATGAAGATCATAGGGCTCTTGGTGCTGGTAGTTTGC GGGTTTGCGCTAGTTTC ACATGCGAGCGTC TTTTTCTTTGATCAACCGCTTCGGCAGCAGTTTGTGGGAGCTGTGAGCATGGCTTCGCTGATCTCCATGTTCGCTTCTCCGTTAGCTTGT CATGGGAGTTGTGATT CGATCAGAGTCTGTGGAGTTCATG CCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCCAGTTTTGCATTGTATGGGTTGCTGCTGCGAGATTTCTTCATTTATTTCCCTAGTGGGCTTG ] [+] EMBL CF293463 [ AGATACAAGTGTCATCCCGCATCCAACAACCATGGACTCCTTGTATGATATCTCCTGCTTTGCTGCTGGTCTTGCAGGCAACATCTTTGCGCTTGCTCTCTTCCTGTCGCCAGTGACGACGTTTAAGAGGATCCTGAAGGCCAAATCGACCGAGCGATTCGACGGGCTCCCTTACCTGTTCTCGCTGCTGAATTGCCTCATCTGCCTGTGGTATGGACTTCCCTGGGTCGCCGATGGCAGGCTGCTCGTCGCTACCGTCAACGGCATT GG AGCGGTGTTCCAGCTCGCCTAC ATTTGCCTCTTC ATCTTCTACGCGGACAGCAGGAAGACGAGGATGAAGATCATAGGGCTCTTGGTGCTGGTAGTTTGC GGGTTTGCGCTAGTTTC ACATGCGAGCGTC TTTTTCTTTGATCAACCGCTTCGGCAGCAGTT ] [+] EMBL OSS11451A [ ACAAGTGTCATCCCGCATCCAACAACCATGGACTCCTTGTATGATATCTCCTGCTTTGCTGCTGGTCTTGCAGGCAACATCTTTGCGCTTGCTCTCTTCCTGTCGCCAGTNACGACGTTTAAGAGGATCCTGAAGGCCAAATCGACCGAGCGATTCGACGGGCTCCCTTACCTGTTCTCGCTGCTGAATTGCCTCATCTGCCTGTGGTATGGACTTCCCTGGGTCGCCGATGGCANGCTGCTCGTCGCTACCGTCAACGGCATT NG AGCGGTGTTCCAGCTCGNCTACAAATTGCCTCTTCAATCTTCTACGCGGACAACAGGga ] [+] EMBL OSC7871 [ GTGTCATCCCGNATCCAACAACCATGGACTCCTTGTATGATATCTCCTGCTTTGCTGCTGGTCTTGCAGGCAACATCTTTGCGCTTGCTCTCTTCCTGTCGCCAGTGACGACGTTTAANAGGATCCTGAAGGCCAAATCGACCGAGCGATTCGACGGGCTCCCTTACCTGTTCTCGCTGCTGAATTGCCTCATCTGCCTGTGGTATGGACTTCCCTGGGTCGNCGATGGAAGGCTGCTCGTCGCTACCGTCAACGGCATT GGAAGCGGTGTTCCAGCTCGCCTAC ATTTGCCTCTTC ATCTTCTACGCGGACAGAAGGAAGACGAGGATGAAGATCATAGGGCTCTTGGTGCTGGTAGTTTGCGGGGTTTTCGCTAATTTCAAAATGCGAGCGTCTTTTTTCTTTGATna ] [+] EMBL OSC6141 [ GTCATCCCGCATCCAACAACCATGGACTCCTTGTATGATATCTGCTGCTTTGCTGCTGGTCTTGCAGGCAACATCTTTGCGCTTGCTCTCTTCCTGTCGCCAGTGACGACGTTTAANAGGATCCTGAAGGCCAAATCGACCGAGCGATTCGACGGGCTCCCTTACCTGTTCTCGCTGCTGAATTGCCTCATCTGCCTGTGGTATGGACTTCCCTGGGTCGCCGATGGCAGGCTGCTCGTCGCTACCGTCAACGGCATT NG AGCGGTGTTCCAGCTCGCCTAC ATTTGCCTCTTC ATCTTCTACGCGGACAACAGGAAGACGAGG ] [+] EMBL CA766649 [ ACC TGGACTCCTTGTATGATATCTCCTGCTTTGCTGCTGGTCTTGCAGGCAACATCTTTGCGCTTGCTCTCTTCCTGTCGCCAGTGACGACGTTTAAGAGGATCCTGAAGGCCAAATCGACCGAGCGATTCGACGGGCTCCCTTACCTGTTCTCGCTGCTGAATTGCCTCATCTGCCTGTGGTATGGACTTCCCTGGGTCGCCGATGGCAGGCTGCTCGTCGCTACCGTCAACGGCATT GG AGCGGTGTTTCAGCTCGCCTAC ATTTGCCTCTTC ATCTTCTACGCGGACAGCAGGAAGACGAGGATGAAGATCATAGGGCTCTTGGTGCTGGTAGTTTGC GGGTTTGCGCTAGTTTC ACATGCGAGCGTC TTTTTCTTTGATCAACCGCTTCGGCAGCAGTTTGTGGGAGCTGTGAGCATGGCTTCGCTGATCTCCATGTTCGCTTCTCCGTTAGC TGT CATGGGAGTTGTGATT CGGTCAGAGTCTGTGGAGTTCATG CCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCCAGTTTTGCATTGTATGGGTTGCTGCTGCGAGATTTCTTCATTTATTTCCCTAATGGGCTTGGACTTATCCTGGGAGCAATG CAGCTGGCGCTCTACGCTTACTACAGCAGAAAATGGAGAGGCCAGGGATTCATCTGCACCCGTTGCTGCTCGCATGATCAAAAACCGGAGTGAATGATTGATCGATCAGCTGGTTTTGCCATGGTTTGGATTCTTGNAAGAGNGGGTTTATGGNGAATTGGACAGNTTTGGCT ] [-] EMBL CF292772 [ AGCTGTGAGCATGGCTTCGCTGATCTCCATGTTCGCTTCTCCGTTAGC TGT CATGGGAGTTGTGATT CGATCAGAGTCTGTGGAGTTCAAG CCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCCAGTTTTGCATTGTATGGGTTGCTGCTGCGAGATTTCTTCATTTATTTCCCTAGTGGGCTTGGACTTATCCTGGGAGCAATG CAGCTGGCGCTTTACGCTTACTACAGCAGAAAATGGAGAGGCCA GGATTCATCTGCA CCGTTGCTGATAGCATGATC AAAACCGGAGTGAATGATTGATCGATCAGCTGGTTTTGCCATGGTTTGGAATCTTGAAAGAGTGGGTTTAAGGTGAATTGTACAGTTTTGGCTCAGTCTTCACATGTTGGTACTGGAAACTGTACTTCAAACTGCATTCTTCAAACATG TGGAAAGTTTTGCACACCAGGGGGGCAAATGA GGA TTTTTTTTAATTTGAAAACCTCCTTTTCCTTGAAaaaaa ] [+] EMBL AU096489 [ CGTTAGC TGTCCATGGGAGTNGTGATTCCGGTCAGAGTCTNTGGAGTTCATGCCCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCCAGTTTTGCATTGTATGGNTTGCTGCTGCGAGATTTCTTCATTTATTNCCCTAATGGGCTTGGACTTATCCTGGGAGCAATGCCAGCTGGCGCTCTACGCTTACTACAGCAGAAAATGGAGAGGCCA GGATTCATCTGCA CCGTTGCTGCTCGCATGATC AAAACCGGAGTGAATGATTGATCGATCAGCTGGTTTTGCCATGGTTTGGATTCTTGAAAGAGTGGGTTTATGGTGAATTGTACAGTTTTGGCTCAGTCTTCACATGTTGGTACTGGAAGCTGTACTTCAAACTGCATTCTTCAAACATGTTGGAAAGTTTTGCACACCAGGGGGGCAAATGATGGA TTTTTTTTAATTTGATTCCCTCCTTTTCCTTGAATACTTGGTGTGCAAAATTATTTCAGCTATGCACATTGAGCCTCACTTCTTGTTATCAATTATGACATGTCACATATGTATAAGTTGCGATGATAGTTTTGTTTCGTTGCTGTTTGTAAACTGCAATATTCTTCTCGCCAAACTGTGTGAACAACAAATCAATGGCCACGTCATATATGTACAAGTTGAGATGATAAAAAAAA ] [-] EMBL CF293462 [ T CATGGGAGTTGTGATT CGGTCAGAGTCTGTGGAGTTCATG CCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCCAGTTTTGCATTGTATGGGTTGCTGCTGCGAGATTTCTTCATTTATTTCCCTAATGGGCTTGGACTTATCCTGGGAGCAATG CAGCTGGCGCTCTACGCTTACTACAGCAGAAAATGGAGAGGCCA GGATTCATCTGCA CCGTTGCTGCTCGCATGATC AAAACCGGAGTGAATGATTGATCGATCAGCTGGTTTTGCCATGGTTTGGATTCTTGAAAGAGTGGGTTTATGGTGAATTGTACAGTTTTGGCTCAGTCTTCACATGTTGGTACTGGAAGCTGTACTTCAAACTGCATTCTTCAAACATGTTGGAGAGTTTTGCACACCAGGGGGGCAAATGATGGA TTTTTTTTAATTTGATTCCCTCCTTTTCCTTGAATACTTGGTGTGCAAAATTATTTCAGCTATGCACATTGAGCCTCACTTCTTGTTATCAATTATGACATGTCACATATGTATAAGTTGCGATGATAGTTTTGTTTCGTTGCTGTTTGTAAAaaa ] [-] EMBL CA763017 [ GATT CGGTCAGAGTCTGTGGAGTTCATG CCGTTCTATCTGTCACTCTNTACGTTCTTGATGAGCGCCAGTTTTGCATGGTATGGGTTGCTGCTGCGAGATTTCTTCATTTATTTCCCTAATGGGCTTGGACTTATCCTGGGAGCAATG CAGCTGGCGCTCTACGCTTACTACAGCAGAAAATGGAGAGGCCA GGATTCATTTGCA CCGTTGCTGCTCGCATGATC AAAACCGGAGTGAATGATTGATCGATCAGCTGGTTTTGCCATGGTTTGGATTCTTGAAAGAGTGGGTTTATGGTGAATTGTACAGTTTTGGCTCAGTCTTCACATGTTGGT CTGGAAGCTGTACTTCAAACTGCATTCTTCAAACATGTTGGAAAGTTTTGCACGCCAGGGGGGCAAATCATGGATTTTTTTTTAATTTGATTCCCTCCTTTTCCTTGAATACTTGGTGTGCAAAATTATTTCAGCTATGCACATTGAGCCTCACTTCTTGTTATCAATTATGACATGTCACATATGTATAAGTTGCGATGATAGTTTTGTTTCGTTGCTGTTTGTAAACTGCAATATTCTTCTCGCCAAACTGTGTGAACAACAAATCAATGGCCACGTCATATATGTACAAGTTGAGATGATAAAAAAAAAATAAAAAAAAAAAAAAA] [-] EMBL CF309719 [ AGAGGCCA GGATTCATCTGCA CCATTGCTGCTCGCATGATC AAAACCGGAGTGAATGATTGATCGATCAGCTGGTTTTGCCATGGTTTGGATTCTTGAAAGAGTGGGTTTATGGTGAATTGTACAGTTTTGGCTCAGTCTTCACATGTTGGTACTGGAAGCTGTACTTCAAACTGCATTCTTCAAACATGTTGGAAAGTTTTGCACACCAGGGGGGCAAATGATGGA TTTTTTTTAATTTGATTCCCTCCTTTTCCTTGAATACTTGGTGTGCAAAATTATTTCAGCTATGCACATTGAGCCTCACTTCTTGTTATCAATTATGACATGTCACATATGTATAAGTTGCGATGATAGTTTTGTTTCGTTGCTGTTTGTAAACTGCAATATTCTTCTCGCCAAACTGTGTGAACAACAAATCAATGGCCACGTCATATATGTAAAAaaaa ] consensusID : consensus_14311#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 774 fasta sequence [CTTACACCCCTTCATAAGTTCCTATCGCAAAATGGTCTGGATCGAAAAGAGGCTTGCTAATCTTCTGAAAATCTGGCCGCCTCCTTTTGTTTTGTCGCTGCAGGCAACATCTTTGCGCTTGCTCTCTTCCTGTCGCCAGTGACGACGTTTAAGAGGATCCTGAAGGCCAAATCGACCGAGCGATTCGACGGGCTCCCTTACCTGTTCTCGCTGCTGAATTGCCTCATCTGCCTGTGGTATGGACTTCCCTGGGTCGCCGATGGCAGGCTGCTCGTCGCTACCGTCAACGGCATTGGAGCGGTGTTCCAGCTCGCCTACATTTGCCTCTTCATCTTCTACGCGGACAGCAGGAAGACGAGGATGAAGATCATAGGGCTCTTGGTGCTGGTAGTTTGCGGGTTTGCGCTAGTTTCACATGCGAGCGTCTTTTTCTTTGATCAACCGCTTCGGCAGCAGTTTGTGGGAGCTGTGAGCATGGCTTCGCTGATCTCCATGTTCGCTTCTCCGTTAGCTGTCATGGGAGTTGTGATTCGGTCAGAGTCTGTGGAGTTCATGCCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCCAGTTTTGCATTGTATGGGTTGCTGCTGCGAGATTTCTTCATTTATTTCCCTAATGGGCTTGGACTTATCCTGNGAGCAATGCAGCTGGCGCTCTACGCTTACTACAGCAGAAAATGGAGAGGCCAGGATTCATCTGCACCGTTGCTGCTCGCATGATCAANACCGGAGTGAATGATTGAT] [+] EMBL CB684560 [CTTACACCCCTTCATAAGTTCCTATCGCAAAATGGTCTGGATCGAAAAGAGGCTTGCTAATCTTCTGAAAATCTGGCCGCCTCCTTTTGTTTTGTCGCTGCAGGCAACATCTTTGCGCTTGCTCTCTTCCTGTCGCCAGTGACGACGTTTAAGAGGATCCTGAAGGCCAAATCGACCGAGCGATTCGACGGGCTCCCTTACCTGTTCTCGCTGCTGAATTGCCTCATCTGCCTGTGGTATGGACTTCCCTGGGTCGCCGATGGCAGGCTGCTCGTCGCTACCGTCAACGGCATTGGAGCGGTGTTCCAGCTCGCCTACATTTGCCTCTTCATCTTCTACGCGGACAGCAGGAAGACGAGGATGAAGATCATAGGGCTCTTGGTGCTGGTAGTTTGCGGGTTTGCGCTAGTTTCACATGCGAGCGTCTTTTTCTTTGATCAACCGCTTCGGCAGCAGTTTGTGGGAGCTGTGAGCATGGCTTCGCTGATCTCCATGTTCGCTTCTCCGTTAGCTGTCATGGGAGTTGTGATTCGGTCAGAGTCTGTGGAGTTCATGCCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCCAGTTTTGCATTGTATGGGTTGCTGCTGCGAGATTTCTTCATTTATTTCCCTAATGGGCTTGGACTTATCCTGNGAGCAATGCAGCTGGCGCTCTACGCTTACTACAGCAGAAAATGGAGAGGCCAGGATTCATCTGCACCGTTGCTGCTCGCATGATCAANACCGGAGTGAATGATTGAT] consensusID : consensus_14311#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence [GCTGCTCGTCGCTACCGTCAACGGCATTGGANCGGTGTTCCAGCTCGCCTACATTTNCCTCTTCATCTTCTACGCGGACAGCAGGAAGACGAGGATGAAGATCATAGGGCTCTTGGTGCTGGTAGTTTGCGGGTTTGCGCTAGTTTCACATGCGAGCGTCTTTTTCTTTGATCAACCGCTTCGNCAGCAGTTTGTGGGAGCTGTGAGCATGNTTCGCTGATCTCCATGTTCGCTTCTCCGTTAGCTGTCATGGGAGTTGTGATTCGGTCAGAGTCTGTGGAGTTCATNCCGTTCTATCTGTCACTCTCTACGCTTACTACAGCAGAAAATGGAGAGGCCAGGATTCATCTGCACCGTTGCTGCTCGCATGATCAAAACCGGAGTGAATGATTGATCGATCAGCTGGTTTTNCCATGGTTTGGATTCTTGAAAGAGTGGGTTTATGGTGAATTGTACAGTTTTGGCTCAGTCTTCACATGTTGGTACTGGAAGCTGTACTTCAAACTGCATTCTTCAAACATGTTGGAAAGTTTTGCACACCAGGGGGGCAAATGATGGATTTTTTTTAATTTGATTCCCTCCTTTTCCTTGAATACTTGGTGTGCAAAATTATTTCAGCTATGCACATTGAGCCTCACTTCTTGTTATCAATTATGACATGTCACATATGTATAAGTTGCGATGATAGTTTTGTTTCAAAAAAA] [+] EMBL AU032780 [GCTGCTCGTCGCTACCGTCAACGGCATTGGANCGGTGTTCCAGCTCGCCTACATTTNCCTCTTCATCTTCTACGCGGACAGCAGGAAGACGAGGATGAAGATCATAGGGCTCTTGGTGCTGGTAGTTTGCGGGTTTGCGCTAGTTTCACATGCGAGCGTCTTTTTCTTTGATCAACCGCTTCGNCAGCAGTTTGTGGGAGCTGTGAGCATGNTTCGCTGATCTCCATGTTCGCTTCTCCGTTAGCTGTCATGGGAGTTGTGATTCGGTCAGAGTCTGTGGAGTTCATNCCGTTCTATCTGTCACTCTCTACGCTTACTACAGCAGAAAATGGAGAGGCCAGGATTCATCTGCACCGTTGCTGCTCGCATGATCAAAACCGGAGTGAATGATTGATCGATCAGCTGGTTTTNCCATGGTTTGGATTCTTGAAAGAGTGGGTTTATGGTGAATTGTACAGTTTTGGCTCAGTCTTCACATGTTGGTACTGGAAGCTGTACTTCAAACTGCATTCTTCAAACATGTTGGAAAGTTTTGCACACCAGGGGGGCAAATGATGGATTTTTTTTAATTTGATTCCCTCCTTTTCCTTGAATACTTGGTGTGCAAAATTATTTCAGCTATGCACATTGAGCCTCACTTCTTGTTATCAATTATGACATGTCACATATGTATAAGTTGCGATGATAGTTTTGTTTCAAAAAAA] consensusID : consensus_14311#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [GAANTTCCCTCATCTNCCTGTGGGTATGNACTCCCCTGGGTCNCCGAATGGCAGGCTGCTCGTCGCTACCGTCAACGGCATTGGAACCGGTGTTCCAAGCTCGCCNACATTTGCNTCTTCATCTTCTACNCGGACAGCAGGAAGACCGAGGATGAAGATCATAGGNCTCTTGGTGCTGGTAGTTTGCGGGTTTGCCGCTAGTTTCACATGCGAGCGTCTTTTTCTTTGATCAACCGCTTCGGCAGCAGTTTGTGGGANCTGTGAGCATGNTTCGCTGATCTCCATGTTCGCTTCTCCGTTAGCTGTCATGGGAGTTGTGATTCGGTCAGAGTCTGTGGAGTTCATGCCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCCAGTTTTGCATTTTCCCTAATGGGCTTGGACTTATCCTGGGAGCAATGCACTGGCGCTCTACGCTTACTACAGCAGAAAATGGAGAGGCCAGGATTCATCTGCACCGTTGCTGCTCGCATGATCAAAACCGGAGTGAATGATTGATCGATCAGCTGGTTTTGCCATGGTTTGGATTCTTGAAAGAGTGGGTTTATGGTGAATTGTACAGTTTTGGCTCAGTCTTCACATGTTGGTACTGGAAGCTGTACTTCAAACTGCATTCTTCAAACATGTTGCAAAATTATTTCAGCTATGCAAAAA] [+] EMBL AU095897 [GAANTTCCCTCATCTNCCTGTGGGTATGNACTCCCCTGGGTCNCCGAATGGCAGGCTGCTCGTCGCTACCGTCAACGGCATTGGAACCGGTGTTCCAAGCTCGCCNACATTTGCNTCTTCATCTTCTACNCGGACAGCAGGAAGACCGAGGATGAAGATCATAGGNCTCTTGGTGCTGGTAGTTTGCGGGTTTGCCGCTAGTTTCACATGCGAGCGTCTTTTTCTTTGATCAACCGCTTCGGCAGCAGTTTGTGGGANCTGTGAGCATGNTTCGCTGATCTCCATGTTCGCTTCTCCGTTAGCTGTCATGGGAGTTGTGATTCGGTCAGAGTCTGTGGAGTTCATGCCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCCAGTTTTGCATTTTCCCTAATGGGCTTGGACTTATCCTGGGAGCAATGCACTGGCGCTCTACGCTTACTACAGCAGAAAATGGAGAGGCCAGGATTCATCTGCACCGTTGCTGCTCGCATGATCAAAACCGGAGTGAATGATTGATCGATCAGCTGGTTTTGCCATGGTTTGGATTCTTGAAAGAGTGGGTTTATGGTGAATTGTACAGTTTTGGCTCAGTCTTCACATGTTGGTACTGGAAGCTGTACTTCAAACTGCATTCTTCAAACATGTTGCAAAATTATTTCAGCTATGCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14311#1 CTTACACCCCTTCATAAGTTCCTATCGCAAAATGGTCTGGATCGAAAAGAGGCTTGCTAA 60 consensus_14311#3 ------------------------------------------------------------ consensus_14311#0 ---------------GAGAAAAGGGAAGATACAAGTGTCATCCCGCATCCAACAACCATG 45 consensus_14311#2 ------------------------------------------------------------ consensus_14311#1 TCTTCTGAAAATCTGGCCGCCTCCTTTTGTTTTGTCGCTGCAGGCAACATCTTTGCGCTT 120 consensus_14311#3 ------------------------------------------------------------ consensus_14311#0 GACTCCTTGTATGATATCTCCTGCTTTGCTGCTGGTCTTGCAGGCAACATCTTTGCGCTT 105 consensus_14311#2 ------------------------------------------------------------ consensus_14311#1 GCTCTCTTCCTGTCGCCAGTGACGACGTTTAAGAGGATCCTGAAGGCCAAATCGACCGAG 180 consensus_14311#3 ------------------------------------------------------------ consensus_14311#0 GCTCTCTTCCTGTCGCCAGTGACGACGTTTAAGAGGATCCTGAAGGCCAAATCGACCGAG 165 consensus_14311#2 ------------------------------------------------------------ consensus_14311#1 CGATTCGACGGGCTCCCTTACCTGTTCTCGCTGCTGAATTGCCTCATCTGCCTGTGG-TA 239 consensus_14311#3 ----------------------------------GAANTTCCCTCATCTNCCTGTGGGTA 26 consensus_14311#0 CGATTCGACGGGCTCCCTTACCTGTTCTCGCTGCTGAATTGCCTCATCTGCCTGTGG-TA 224 consensus_14311#2 ------------------------------------------------------------ consensus_14311#1 TGGACTTCCCTGGGTCGCCGA-TGGCAGGCTGCTCGTCGCTACCGTCAACGGCATTGGAG 298 consensus_14311#3 TGNACTCCCCTGGGTCNCCGAATGGCAGGCTGCTCGTCGCTACCGTCAACGGCATTGGAA 86 consensus_14311#0 TGGACTTCCCTGGGTCGCCGA-TGGCAGGCTGCTCGTCGCTACCGTCAACGGCATTGGAG 283 consensus_14311#2 ----------------------------GCTGCTCGTCGCTACCGTCAACGGCATTGGAN 32 ******************************* consensus_14311#1 C-GGTGTTCCA-GCTCGCCTACATTTGCCTCTTCATCTTCTACGCGGACAGCAGGAAGAC 356 consensus_14311#3 CCGGTGTTCCAAGCTCGCCNACATTTGCNTCTTCATCTTCTACNCGGACAGCAGGAAGAC 146 consensus_14311#0 C-GGTGTTCCA-GCTCGCCTACATTTGCCTCTTCATCTTCTACGCGGACAGCAGGAAGAC 341 consensus_14311#2 C-GGTGTTCCA-GCTCGCCTACATTTNCCTCTTCATCTTCTACGCGGACAGCAGGAAGAC 90 * ********* ******* ****** * ************** **************** consensus_14311#1 -GAGGATGAAGATCATAGGGCTCTTGGTGCTGGTAGTTTGCGGGTTTGC-GCTAGTTTCA 414 consensus_14311#3 CGAGGATGAAGATCATAGGNCTCTTGGTGCTGGTAGTTTGCGGGTTTGCCGCTAGTTTCA 206 consensus_14311#0 -GAGGATGAAGATCATAGGGCTCTTGGTGCTGGTAGTTTGCGGGTTTGC-GCTAGTTTCA 399 consensus_14311#2 -GAGGATGAAGATCATAGGGCTCTTGGTGCTGGTAGTTTGCGGGTTTGC-GCTAGTTTCA 148 ****************** ***************************** ********** consensus_14311#1 CATGCGAGCGTCTTTTTCTTTGATCAACCGCTTCGGCAGCAGTTTGTGGGAGCTGTGAGC 474 consensus_14311#3 CATGCGAGCGTCTTTTTCTTTGATCAACCGCTTCGGCAGCAGTTTGTGGGANCTGTGAGC 266 consensus_14311#0 CATGCGAGCGTCTTTTTCTTTGATCAACCGCTTCGGCAGCAGTTTGTGGGAGCTGTGAGC 459 consensus_14311#2 CATGCGAGCGTCTTTTTCTTTGATCAACCGCTTCGNCAGCAGTTTGTGGGAGCTGTGAGC 208 *********************************** *************** ******** consensus_14311#1 ATGGCTTCGCTGATCTCCATGTTCGCTTCTCCGTTAGCTGTCATGGGAGTTGTGATTCGG 534 consensus_14311#3 ATGN-TTCGCTGATCTCCATGTTCGCTTCTCCGTTAGCTGTCATGGGAGTTGTGATTCGG 325 consensus_14311#0 ATGGCTTCGCTGATCTCCATGTTCGCTTCTCCGTTAGCTGTCATGGGAGTTGTGATTCGG 519 consensus_14311#2 ATGN-TTCGCTGATCTCCATGTTCGCTTCTCCGTTAGCTGTCATGGGAGTTGTGATTCGG 267 *** ******************************************************* consensus_14311#1 TCAGAGTCTGTGGAGTTCATGCCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCC 594 consensus_14311#3 TCAGAGTCTGTGGAGTTCATGCCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCC 385 consensus_14311#0 TCAGAGTCTGTGGAGTTCATGCCGTTCTATCTGTCACTCTCTACGTTCTTGATGAGCGCC 579 consensus_14311#2 TCAGAGTCTGTGGAGTTCATNCCGTTCTATCTGTCACTCTCTACGCTTACTACAGCAGAA 327 ******************** ************************ * * * consensus_14311#1 AGTTTTGCATTGTATGGGTTGCTGCTGCGAGATTTCTTCATTTATTTCCCTAATGGGCTT 654 consensus_14311#3 AGTTTTGCATT----------------------------------TTCCCTAATGGGCTT 411 consensus_14311#0 AGTTTTGCATTGTATGGGTTGCTGCTGCGAGATTTCTTCATTTATTTCCCTAATGGGCTT 639 consensus_14311#2 AATGGAGAGGC---CAGGATTCATCTGCACCGTTGCTGC-----TCGCATGATCAAAACC 379 * * * * * consensus_14311#1 GGACTTATCCTGNGAGCAATGCAGCTGGCGCTCT-ACGCTTACTACAGCAGAAAATGGAG 713 consensus_14311#3 GGACTTATCCTGGGAGCAATGCA-CTGGCGCTCT-ACGCTTACTACAGCAGAAAATGGAG 469 consensus_14311#0 GGACTTATCCTGGGAGCAATGCAGCTGGCGCTCT-ACGCTTACTACAGCAGAAAATGGAG 698 consensus_14311#2 GGAGTGAATGATTGATCGAT-CAGCTGGTTTTNCCATGGTTTGGATTCTTGAAAG-AGTG 437 *** * * ** * ** ** **** * * * ** * **** * * consensus_14311#1 AGGCCAGGATTCATCTGCACCGTTGCTGCTC-GCATGATCAANACCGGAGTGAATGATTG 772 consensus_14311#3 AGGCCAGGATTCATCTGCACCGTTGCTGCTC-GCATGATCAAAACCGGAGTGAATGATTG 528 consensus_14311#0 AGGCCAGGATTCATCTGCACCGTTGCTGCTC-GCATGATCAAAACCGGAGTGAATGATTG 757 consensus_14311#2 GGTTTATGGTGAAT-TGTACAGTTTTGGCTCAGTCTTCACATGTTGGTACTGGAAGCTGT 496 * * * * ** ** ** *** **** * * ** * * ** * * * consensus_14311#1 A--T-------------------------------------------------------- 774 consensus_14311#3 A--TCGATCAGCTGGTTTTGCCATGGTTTGGATTCTTGAAAGAGTGGGTTTATGGTGAAT 586 consensus_14311#0 A--TCGATCAGCTGGTTTTGCCATGGTTTGGATTCTTGAAAGAGTGGGTTTATGGTGAAT 815 consensus_14311#2 ACTTCAAACTGCATTCTTCAAACATGTTGGAAAGTTTTGCACACCAGGGGGGCAAATGAT 556 * * consensus_14311#1 ------------------------------------------------------------ consensus_14311#3 TGTACAGTTTTGGCTCAGTCTTCACATGTTGGTACTGGAAGCTGTACTTCAAACTGCATT 646 consensus_14311#0 TGTACAGTTTTGGCTCAGTCTTCACATGTTGGTACTGGAAGCTGTACTTCAAACTGCATT 875 consensus_14311#2 GGATTTTTTTTAATTTGATTCCCTCCTTTTCCTTGAATACTTGGTGTGCAAAATTATTTC 616 consensus_14311#1 ------------------------------------------------------------ consensus_14311#3 CTTCAAACATGTTGCAAAATTATTTCAGCTATGCAAAAA--------------------- 685 consensus_14311#0 CTTCAAACATGTTGGAAAGTTTTGCACACCAGGGGGGCAAATGATGGATTTTTTTTAATT 935 consensus_14311#2 AGCTATGCACATTGAGCCTCACTTCTTGTTATCAATTATGACATGTCACATATGTATAAG 676 consensus_14311#1 ------------------------------------------------------------ consensus_14311#3 ------------------------------------------------------------ consensus_14311#0 TGATTCCCTCCTTTTCCTTGAATACTTGGTGTGCAAAATTATTTCAGCTATGCACATTGA 995 consensus_14311#2 TTGCGATGATAGTTTTGTTTCAAAAAAA-------------------------------- 704 consensus_14311#1 ------------------------------------------------------------ consensus_14311#3 ------------------------------------------------------------ consensus_14311#0 GCCTCACTTCTTGTTATCAATTATGACATGTCACATATGTATAAGTTGCGATGATAGTTT 1055 consensus_14311#2 ------------------------------------------------------------ consensus_14311#1 ------------------------------------------------------------ consensus_14311#3 ------------------------------------------------------------ consensus_14311#0 TGTTTCGTTGCTGTTTGTAAACTGCAATATTCTTCTCGCCAAACTGTGTGAACAACAAAT 1115 consensus_14311#2 ------------------------------------------------------------ consensus_14311#1 ------------------------------------------------------------ consensus_14311#3 ------------------------------------------------------------ consensus_14311#0 CAATGGCCACGTCATATATGTACAAGTTGAGATGATAAAAAAAAAATAAAAAAAAAAAAA 1175 consensus_14311#2 ------------------------------------------------------------ consensus_14311#1 -- consensus_14311#3 -- consensus_14311#0 AA 1177 consensus_14311#2 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||