cluster # 14318

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Oryza sativa
cluster # 14318 cluster # 14318 Sequences # 16 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14318#0 length = 757 sequences # 10
consensus_14318#1 length = 687 sequences # 3

consensus_14318#2 length = 567 sequences # 1
consensus_14318#3 length = 419 sequences # 1
consensus_14318#4 length = 251 sequences # 1

consensusID : consensus_14318#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 757
fasta sequence

                              [TGTGGTCAGCTGCATATCCATACTTGTATGTAGAGAAGAATGTAATACTGCTCCAGTAGGCAGCATCCTCTCCTCTCCTATATCATCATCATATCCAATCCTTGGTTGGTTGGTTCGTTCACAAGGAGGAAAGCCTCGAGCATCATCATCAGTAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCAACAGGAAGAAGCAAGCAAGAAGAGGAAGAAGAAGAAAGCAAGGAGAAGAAGATGCAGGA-CTGGGGTCCGGTGCTGA-TATCTTGGGTGCTGTTCATCCTGCTGTCGCCGGGGCTTCTGTTCCAGATACCAGGCAAGTGCAGGTTGATCGAGTTCGGCAAGTTCCAGACCAGCGTCGTCTCCATCCTCGTCCACACCATCCTCTTCTTCGCCCTCGACGCCATCTTCCTCGTCGCCATCGGCGTCCAGATCAACCTT-GGC-TCCTCTCCCTGATTCTCTC-TCTTTG-TTTCTTCTAGGTAATCTCAA-TTGC-ATATGTATAGCAGTATATATGCACCTCCATCCATCATCTC-TAC-TCACCTTAGCTCGTTAATTTGTACTAC-TATTTGTGTGTTCCTTCCAATTCTTGGCATAATATTGTGACTCAAAGGAATTGATTTCAGAGTTACTCATTACTTAGTTTCTTCCTCCACATATATATGTAGCANAATCAAAAGTGCACCATTCATAGCATTTCAAGTAAATTACAACTAGCAAATTTCCCACGCAAAATTAGGCGAAGCCCATTTTTTTCTT]

[+] EMBL CF299323             [TGTGGTCAGCTGCATATCCATACTTGTATGTAGAGAAGAATGTAATACTGCTCCAGTAGGCAGCATCCTCTCCTCTCCTATATCATCATCATATCCAATCCTTGGTTGGTTGGTTCGTTCACAAGGAGGAAAGCCTCGAGCATCATCATCAGTAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCAACAGGAAGAAGCAAGCAAGAAGAGGAAGAAGAAGAAAGCAAGGAGAAGAAGATGCAGGANCTGGGGTCCGGTGCTGANTATCTTGGGTGCTGTTCATCCTGCTGTCGCCGGGGCTTCTGTTCCAGATACCAGGCAAGTGCAGGTTGATCGAGTTCGGCAAGTTCCAGACCAGCGTCGTCTCCATCCTCGTCCACACCATCCTCTTCTTCGCCCTCGACGCCATCTTCCTCGTCGCCATCGGCGTCCAGATCAACCTT GGC TCCTCTCCCTGATTCTCTC TCTTTG TTTCTTCTAGGTAATCTCAA TTGC ATATGTATAGCAGTATATATGCACCTCCATCCATCATCTC TAC TCACCTTAGCTCGTTAATT                                                                                                                                                                                                          ]
[+] EMBL CF325418             [                                                                                          ATATCCAATCCTTGGTTGGTTGGTTCGTTCACAAGGAGGAAAGCCTCGAGCATCATCATCAGTAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCAACAGGAAGAAGCAAGCAAGAAGAGGAAGAAGAAGAAAGCAAGGAGAAGAAGATGCAGGA CTGGGGTCCGGTGCTGA TATCTTGGGTGCTGTTCATCCTGCTGTCGCCGGGGCTTCTGTTCCAGATACCAGGCAAGTGCAGGTTGATCGAGTTCGGCAAGTTCCAGACCAGCGTCGTCTCCATCCTCGTCCACACCATCCTCTTCTTCGCCCTCGACGCCATCTTCCTCGTCGCCATCGGCGTCCAGATCAACCTT GGC TCCTCTCCCTGATTCTCTC TCTTTG TTTCTTCTAGGTAATCTCAA TTGC ATATGTATAGCAGTATATATGCACCTCCATCCATCATCTC TAC TCACCTTAGCTCGTTAATTTGTACTAC TATTTGTGTGTTCCTTCCAATTCTTGGCATAATATTGTGACTCAAAGGAATTGATTTCAGAG                                                                                                                                   ]
[+] EMBL AK062996             [                                                                                                                                   AGCCTCGAGCATCATCATCAGTAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCAACAGGAAGAAGCAAGCAAGAAGAGGAAGAAGAAGAAAGCAAGGAGAAGAAGATGCAGGA CTGGGGTCCGGTGCTGA TATCTTGGGTGCTGTTCATCCTGCTGTCGCCGGGGCTTCTGTTCCAGATACCAGGCAAGTGCAGGTTGATCGAGTTCGGCAAGTTCCAGACCAGCGTCGTCTCCATCCTCGTCCACACCATCCTCTTCTTCGCCCTCGACGCCATCTTCCTCGTCGCCATCGGCGTCCAGATCAACCTT GGC TCCTCTCCCTGATTCTCTC TCTTTG TTTCTTCTAGGTAATCTCAA TTGC ATATGTATAGCAGTATATATGCACCTCCATCCATCATCTC TAC TCACCTTAGCTCGTTAATTTGTACTAC TATTTGTGTGTTCCTTCCAATTCTTGGCATAATATTGTGACTCAAAGGAATTGATTTCAGAGTTA                                                                                                                                ]
[+] EMBL CF300684             [                                                                                                                                     CCTCGAGCATCATCATCAGTAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCAACAGGAAGAAGCAAGCAAGAAGAGGAAGAAGAAGAAAGCAAGGAGAAGAAGATGCAGGA CTGGGGTCCGGTGCTGA TATCTTGGGTGCTGTTCATCCTGCTGTCGCCGGGGCTTCTGTTCCAGATACCAGGCAAGTGCAGGTTGATCGAGTTCGGCAAGTTCCAGACCAGCGTCGTCTCCATCCTCGTCCACACCATCCTCTTCTTCGCCCTCGACGCCATCTTCCTCGTCGCCATCGGCGTCCAGATCAACCTT GGC TCCTCTCCCTGATTCTCTC TCTTTG GTTCTTCTAGGTAATCTCAA TTGC ATATGTATAGCAG                                                                                                                                                                                                                                                             ]
[+] EMBL OSS15484A            [                                                                                                                                             ATCATCATCAGTAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCAACAGGAAGAAGCAAGCAAGAAGAGGAAGAAGAAGAAAGCAAGGAGAAGAAGATGCAGGA CTGGGGTCCGGTGCTGA TATCTTGGGTGCTGTTCATCCTGCTGTNGCCGGGGCTTCTGTTCCAGATACCAGGCAAGTGCAGGTTGATCGAGTTCGGCAAGTTCCAGACCAGCGTAGTCTCCATCCTCGTCCACACCATCCTCTTCTTCGCCCTCGACGTCATCTTCCTCGTTGTCATCGGCGTNCAGATCAACCTTGGGCTTCCTCTCCCTGATTCTCTCTTCTTTGTTTTCTTCTAGGTAATCTCAATTTGCAATATGTATAGCAGTATATATG                                                                                                                                                                                                                                                     ]
[+] EMBL C73851               [                                                                                                                                               CATCATCAGTAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCAACAGGAAGAAGCAAGCAAGAAGAGGAAGAAGAAGAAAGCAAGGAGAAGAAGATGCAGGA CTGGGGTCCGGTGCTGA TATCTTGGGTGCTGTTCATCCTGCTGTCGCCGGGGCTTCTGTTCCAGATACCAGGCAAGTGCAGGTTGATCGAGTTCGGCAAGTTCCAGACCAGCGTCGTCTCCATCCTCGTCCACACCATCCTCTTCTTCGCCCTCGACGCCATCTTCCTCGTCGCCATCGG GTCCAGATCAACCTT GGC TCCTCTCCCTGATTCTCTC TCTTTG TTTCTTCTAGGTAATCTCAA TTGC ATATGTATAGCAGTATATATGCAACTCCATCCATCATCTCNTACTTNACCTTAGCTCGTTAATTTGTACTACTTATTTGTGTGTTCCTTCCAATTCTTGG NTAATA                                                                                                                                                               ]
[+] EMBL CA754454             [                                                                                                                                                       GTAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCAACAGGAAGAAGCAAGCAAGAAGAGGAAGAAGAAGAAAGCAAGGAGAAGAAGATGCAGGA CTGGGGTCCGGTGCTGA TATCTTGGGTGCTGTTCATCCTGCTGTCGCCGGGGCTTCTGTTCCAGATACCAGGCAAGTGCAGGTTGATCGAGTTCGGCAAGTTCCAGACCAGCGTCGTCTCCATCCTCGTCCACACCATCCTCTTCTTCGCCCTCGACGCCATCTTCCTCGTCGCCATCGGCGTCCAGATCAACCTT GGC TCCTCTCCCTGATTCTCTC TCTTTG TTTCTTCTAGGTAATCTCAA TTGC ATATGTATAGCAGTATATATGCACCTCCATCCATCATCTC TAC TCACCTTAGCTCGTTAATTTGTACTAC TATTTGTGTGTTCCTTCCAATTCTTGGCATAATATTGTGACTCACAGGAATTGATTTCAGAGTTACTCATTACTTAGTTTCTTCCTCCACATATATATGTAGCANAATCAAAAGTGCACCATTCATAGCATTTCAAGTAAATTACAACTAGCAAATTTCCCACGCAAAATTAGGCGAAGCCCATTTTTTTCTT]
[-] EMBL BU673225             [                                                                                                                                                                                                                                                            GTCCGGTGCTGA TATCTTGGGTGCTGTTCATCCTGCTGTCGCCGGGGCTTCTGTTCCAGATACCAGGCAAGTGCAGGTTGATCGAGTTCGGCAAGTTCCAGACCAGCGTCGTCTCCATCCTCGTCCACACCATCCTCTTCTTCGCCCTCGACGCCATCTTCCTCGTCGCCATCGGCGTCCAGATCAACCTT GGC TCCTCTCCCTGATTCTCTC TCTTTG TTTCTTCTAGGTAATCTCAA TTGC ATATGTATAGCAGTATATATGCACCTCCATCCATCATCTC TAC TCACCTTAGCTCGTTAATTTGTACTAC TATTTGTGTGTTCCTTCCAATTCTTGGCATAATATTGTGACTCAAAGGA                                                                                                                                                ]
[-] EMBL CB967397             [                                                                                                                                                                                                                                                            GTCCGGTGCTGA TATCTTGGGTGCTGTTCATCCTGCTGTCGCCGGGGCTTCTGTTCCAGATACCAGGCAAGTGCAGGTTGATCGAGTTCGGCAAGTTCCAGACCAGCGTCGTCTCCATCCTCGTCCACACCATCCTCTTCTTCGCCCTCGACGCCATCTTCCTCGTCGCCATCGGCGTCCAGATCAACCTT GGC TCCTCTCCCTGATTCTCTC TCTTTG TTTCTTCTAGGTAATCTCAA TTGC ATATGTATAGCAGTATATATGCACCTCCATCCATCATCTC TAC TCACCTTAGCTCGTTAATTTGTACTAC TATTTGTGTGTTCCTTCC ATTCTTGGCATAATATTGTGACTCAAAGGA                                                                                                                                                ]
[-] EMBL CB965150             [                                                                                                                                                                                                                                                            GTCCGGTGCTGA TATCTTGGGTGCTGTTCATCCTGCTGTCGCCGGGGCTTCTGTTCCAGATACCAGGCAAGTGCAGGTTGATCGAGTTCGGCAAGTTCCAGACCAGCGTCGTCTCCATCCTCGTCCACACCATCCTCTTCTTCGCCCTCGACGCCATCTTCCTCGTCGCCATCGGCGTCCAGATCAACCTT GGC TCCTCTCCCTGATTCTCTC TCTTTG TTTCTTCTAGGTAATCTCAA TTGC ATATGTATACCAGTATATATGCACCTCCATCCATCATCTC TAC TCACCTTAGCTCGTTAATTTGTACTAC TATTTGTGTGTTCCTTCC ATTCTTGGCATAATATTGTGACTCAAAGGA                                                                                                                                                ]




>consensus_14318#0
TGTGGTCAGCTGCATATCCATACTTGTATGTAGAGAAGAATGTAATACTGCTCCAGTAGG
CAGCATCCTCTCCTCTCCTATATCATCATCATATCCAATCCTTGGTTGGTTGGTTCGTTC
ACAAGGAGGAAAGCCTCGAGCATCATCATCAGTAGGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAGCAACAGGAAGAAGCAAGCAAGAAGAGGAAGAAGAAGAAAGCAAGGAGAAGAAGAT
GCAGGACTGGGGTCCGGTGCTGATATCTTGGGTGCTGTTCATCCTGCTGTCGCCGGGGCT
TCTGTTCCAGATACCAGGCAAGTGCAGGTTGATCGAGTTCGGCAAGTTCCAGACCAGCGT
CGTCTCCATCCTCGTCCACACCATCCTCTTCTTCGCCCTCGACGCCATCTTCCTCGTCGC
CATCGGCGTCCAGATCAACCTTGGCTCCTCTCCCTGATTCTCTCTCTTTGTTTCTTCTAG
GTAATCTCAATTGCATATGTATAGCAGTATATATGCACCTCCATCCATCATCTCTACTCA
CCTTAGCTCGTTAATTTGTACTACTATTTGTGTGTTCCTTCCAATTCTTGGCATAATATT
GTGACTCAAAGGAATTGATTTCAGAGTTACTCATTACTTAGTTTCTTCCTCCACATATAT
ATGTAGCANAATCAAAAGTGCACCATTCATAGCATTTCAAGTAAATTACAACTAGCAAAT
TTCCCACGCAAAATTAGGCGAAGCCCATTTTTTTCTT

consensusID : consensus_14318#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 687
fasta sequence

                              [CACAAGGAGGAAAGCCTCGAGCATCATCATCAGTAGGAAGAAGAAGAAGAGGAAGAAGAAGAAGAGCAACAGGAAGAAGCAAGCAAGAAAGAGGTAGAAGAAGAAAGCAAGGAGAAGAAGATGCAGGACTGGGGTCCGGTGCTGATATCTTGGGTGCTGTTCATCCTGCTGTCGCCGGGGCTTCTGTTCCAGATACCAGGCAAGTGCAGGTTGATCGAGTTCGGCAAGTTCCAGACCAGCGTCGTCTCCATCCTCGTCCACACCATCCTCTTCTTCGCCCTCGACGCCATCTTCCTCGTCGCCATCGGCGTCCAGATCAACCTTGGCTCCTCTCCCTGATTCTCTCTCTTTGTTTCTTCTAGGGCAGCATCAGTACAGTAGCAGCAGGGTCCCAAGGAGGAAGAATTTTGGTGGCATTTTGCGTGGCACAATGGTAATGGAAAGCATGAAGTAGTTGCCCCATCGCCATTCACAGCGACTGCCCTGGACCTGGACCTGGAACTGGA-TGGATGTC-AAATT-AAGTTGAGCTACAAAACAAAAGCTACACATTATGTGCACAGTACAACCGACTGACCATCCATATATCCATCCTATTCTATTCCTGCAACCAAGCTTCAGGATATATCACACATCTATAGAGTGTAGTATTTCACAATCTATATTGAACAAATCTCCAAGAAAAAAAAA]

[+] EMBL CF336517             [CACAAGGAGGAAAGCCTCGAGCATCATCATCAGTAGGAAGAAGAAGAAGAGGAAGAAGAAGAAGAGCAACAGGAAGAAGCAAGCAAGAAAGAGGTAGAAGAAGAAAGCAAGGAGAAGAAGATGCAGGACTGGGGTCCGGTGCTGATATCTTGGGTGCTGTTCATCCTGCTGTCGCCGGGGCTTCTGTTCCAGATACCAGGCAAGTGCAGGTTGATCGAGTTCGGCAAGTTCCAGACCAGCGTCGTCTCCATCCTCGTCCACACCATCCTCTTCTTCGCCCTCGACGCCATCTTCCTCGTCGCCATCGGCGTCCAGATCAACCTTGGCTCCTCTCCCTGATTCTCTCTCTTTGTTTCTTCTAGGGCAGCATCAGTACAGTAGCAGCAGGGTCCCAAGGAGGAAGAATTTTGGTGGCATTTTGCGTGGCACAATGGTAATGGAAAGCATGAAGTAGTTGCCCCATCGCCATTCACAGCGACTGCCCTGGACCTGGACCTGGAACTGGATTGGATGTCAAAATTNAAGTTGAGCTACAAAACAAAAGCTACACATTATGTGCACAGTACAACCGACTGACCATCCATATATCCATCCTATTCTATTCCTG                                                                                   ]
[+] EMBL AK071540             [         GAAAGCCTCGAGCATCATCATCAGTAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCAACAGGAAGAAGCAAGCAAG AAGAGGAAGAAGAAGAAAGCAAGGAGAAGAAGATGCAGGACTGGGGTCCGGTGCTGATATCTTGGGTGCTGTTCATCCTGCTGTCGCCGGGGCTTCTGTTCCAGATACCAGGCAAGTGCAGGTTGATCGAGTTCGGCAAGTTCCAGACCAGCGTCGTCTCCATCCTCGTCCACACCATCCTCTTCTTCGCCCTAGACGCCATCTTCCTCGTCGCCATCGGCGTCCAGATCAACCTTGGCTCCTCTCCCTGATTCTCTCTCTTTGTTTCTTCTAGGGCAGCATCAGTACAGTAGCAGCAGGGTCCCAAGGAGGAAGAATTTTGGTGGCATTTTGCGTGGCACAATGGTAATGGAAAGCATGAAGTAGTTGCCCCATCGCCATTCACAGCGACTGCCCTGGACCTGGACCTGGAACTGGA TGGATGTC AAATT AAGTTGAGCTACAAAACAAAAGCTACACATTATGTGCACAGTACAACCGACTGACCATCCATATATCCATCCTATTCTATTCCTGCAACCAAGCTTCAGGATATATCACACATCTATAGAGTGTAGTATTTCACAATCTATATTGAACAAATCTC             ]
[-] EMBL CF336516             [                                                                                                                                                                                                                                                                                                                 CGGCGTCCAGATCAACCTTGGCTCCTCTCCCTGATTCTCTCTCTTTGTTTCTTCTAGGGCAGCATCAGTACAGTAGCAGCAGGGTCCCAAGGAGGAAGAATTTTGGTGGCATTTTGCGTGGCACAATGGTAATGGAAAGCATGAAGTAGTTGCCCCATCGCCATTCACAGCGACTGCCCTGGACCTGGACCTGGAACTGGA TGGATGTC AAATT AAGTTGAGCTACAAAACAAAAGCTACACATTATGTGCACAGTACAACCGACTGACCATCCATATATCCATCCTATTCTATTCCTGCAACCAAGCTTCAGGATATATCACACATCTATAGAGTGTAGTATTTCACAATCTATATTGAACAAATCTCCAAGAAAAAAAAA]




>consensus_14318#1
CACAAGGAGGAAAGCCTCGAGCATCATCATCAGTAGGAAGAAGAAGAAGAGGAAGAAGAA
GAAGAGCAACAGGAAGAAGCAAGCAAGAAAGAGGTAGAAGAAGAAAGCAAGGAGAAGAAG
ATGCAGGACTGGGGTCCGGTGCTGATATCTTGGGTGCTGTTCATCCTGCTGTCGCCGGGG
CTTCTGTTCCAGATACCAGGCAAGTGCAGGTTGATCGAGTTCGGCAAGTTCCAGACCAGC
GTCGTCTCCATCCTCGTCCACACCATCCTCTTCTTCGCCCTCGACGCCATCTTCCTCGTC
GCCATCGGCGTCCAGATCAACCTTGGCTCCTCTCCCTGATTCTCTCTCTTTGTTTCTTCT
AGGGCAGCATCAGTACAGTAGCAGCAGGGTCCCAAGGAGGAAGAATTTTGGTGGCATTTT
GCGTGGCACAATGGTAATGGAAAGCATGAAGTAGTTGCCCCATCGCCATTCACAGCGACT
GCCCTGGACCTGGACCTGGAACTGGATGGATGTCAAATTAAGTTGAGCTACAAAACAAAA
GCTACACATTATGTGCACAGTACAACCGACTGACCATCCATATATCCATCCTATTCTATT
CCTGCAACCAAGCTTCAGGATATATCACACATCTATAGAGTGTAGTATTTCACAATCTAT
ATTGAACAAATCTCCAAGAAAAAAAAA

consensusID : consensus_14318#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 567
fasta sequence

                              [AGAAGAAGAGCAACAGGAAGAAGCAAGCAAGAAGAGGAAGAAGAAGCAAGCAAGGAGAAGAAGATGCAGGACTGGGGTCCGGTGCTGATATCTTGGGTGCTGTTCATCCTGCTGTCGCCGGGGCTTCTGTTCCAGATACCAGGCAAGTGCAGGTTGATCGAGTTCGGCAAGTTCCAGACCAGCGTCGTCTCCATCCTCGTCCACACCATCCTCTTCTTCGCCCTCGACGCCATCTTCCTCGTCGCCATCGGCGTCCAGATCAACCTTGGCTCCTCTCCCTGATTCTCTCTCTTTGTTTTTTTTAGGTAATCTCAATTGCATATGTATAGCAGTATATATGCACCTCCATCCATCATCTCTACTCACCTTAGCTCGTTAATTTGTACTACTATTTGTGTGTTCCTTCCAATTCTTGGCATAATATTGTGACTCAAAGGAATTGATTTCAGAGTTACTCATTACTTAGTTTCTTCCTCCACATATATATGTAGCAAAATCAAAAGTGCACCATTCATAGCATTTCAAGTAAATTACAACTAGCAAATTTCCCACGCGGGAGAAGAGGGG]

[-] EMBL CB964929             [AGAAGAAGAGCAACAGGAAGAAGCAAGCAAGAAGAGGAAGAAGAAGCAAGCAAGGAGAAGAAGATGCAGGACTGGGGTCCGGTGCTGATATCTTGGGTGCTGTTCATCCTGCTGTCGCCGGGGCTTCTGTTCCAGATACCAGGCAAGTGCAGGTTGATCGAGTTCGGCAAGTTCCAGACCAGCGTCGTCTCCATCCTCGTCCACACCATCCTCTTCTTCGCCCTCGACGCCATCTTCCTCGTCGCCATCGGCGTCCAGATCAACCTTGGCTCCTCTCCCTGATTCTCTCTCTTTGTTTTTTTTAGGTAATCTCAATTGCATATGTATAGCAGTATATATGCACCTCCATCCATCATCTCTACTCACCTTAGCTCGTTAATTTGTACTACTATTTGTGTGTTCCTTCCAATTCTTGGCATAATATTGTGACTCAAAGGAATTGATTTCAGAGTTACTCATTACTTAGTTTCTTCCTCCACATATATATGTAGCAAAATCAAAAGTGCACCATTCATAGCATTTCAAGTAAATTACAACTAGCAAATTTCCCACGCGGGAGAAGAGGGG]




>consensus_14318#2
AGAAGAAGAGCAACAGGAAGAAGCAAGCAAGAAGAGGAAGAAGAAGCAAGCAAGGAGAAG
AAGATGCAGGACTGGGGTCCGGTGCTGATATCTTGGGTGCTGTTCATCCTGCTGTCGCCG
GGGCTTCTGTTCCAGATACCAGGCAAGTGCAGGTTGATCGAGTTCGGCAAGTTCCAGACC
AGCGTCGTCTCCATCCTCGTCCACACCATCCTCTTCTTCGCCCTCGACGCCATCTTCCTC
GTCGCCATCGGCGTCCAGATCAACCTTGGCTCCTCTCCCTGATTCTCTCTCTTTGTTTTT
TTTAGGTAATCTCAATTGCATATGTATAGCAGTATATATGCACCTCCATCCATCATCTCT
ACTCACCTTAGCTCGTTAATTTGTACTACTATTTGTGTGTTCCTTCCAATTCTTGGCATA
ATATTGTGACTCAAAGGAATTGATTTCAGAGTTACTCATTACTTAGTTTCTTCCTCCACA
TATATATGTAGCAAAATCAAAAGTGCACCATTCATAGCATTTCAAGTAAATTACAACTAG
CAAATTTCCCACGCGGGAGAAGAGGGG

consensusID : consensus_14318#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 419
fasta sequence

                              [GAAGATGCAGGACTGGGGTCCGGTGCTGATATCTTGGGTGCTGTTCATCCTGCTGTCGCCGGGGCTTCTGTTCCAGATACCAGGCAAGTGCAGGTTGATCGAGTTCGGCAAGTTCCAGACCAGCGTCGTCTCCATCCTCGTCCACACCATCCTCTTCTTCGCCCTCGACGCCATCTTCCTCGTCGCCATAAAAAAACAGATCAACCTTGGCTCCTCTCCCTGATTCTCTCTCTAAAATAAATCTAGGTAATCTCAATTGCATATGTATAGCAGTATATATGCACCTCCATCCATCATCTCTACTCACCTTAGCTCGTTAATTTGTACTACTATTTGTGTGTTCCTTCCAATTCTTGGCATAATATTGTGATTCTAAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTACGTAGCGTATC]

[-] EMBL CF299324             [GAAGATGCAGGACTGGGGTCCGGTGCTGATATCTTGGGTGCTGTTCATCCTGCTGTCGCCGGGGCTTCTGTTCCAGATACCAGGCAAGTGCAGGTTGATCGAGTTCGGCAAGTTCCAGACCAGCGTCGTCTCCATCCTCGTCCACACCATCCTCTTCTTCGCCCTCGACGCCATCTTCCTCGTCGCCATAAAAAAACAGATCAACCTTGGCTCCTCTCCCTGATTCTCTCTCTAAAATAAATCTAGGTAATCTCAATTGCATATGTATAGCAGTATATATGCACCTCCATCCATCATCTCTACTCACCTTAGCTCGTTAATTTGTACTACTATTTGTGTGTTCCTTCCAATTCTTGGCATAATATTGTGATTCTAAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTACGTAGCGTATC]




>consensus_14318#3
GAAGATGCAGGACTGGGGTCCGGTGCTGATATCTTGGGTGCTGTTCATCCTGCTGTCGCC
GGGGCTTCTGTTCCAGATACCAGGCAAGTGCAGGTTGATCGAGTTCGGCAAGTTCCAGAC
CAGCGTCGTCTCCATCCTCGTCCACACCATCCTCTTCTTCGCCCTCGACGCCATCTTCCT
CGTCGCCATAAAAAAACAGATCAACCTTGGCTCCTCTCCCTGATTCTCTCTCTAAAATAA
ATCTAGGTAATCTCAATTGCATATGTATAGCAGTATATATGCACCTCCATCCATCATCTC
TACTCACCTTAGCTCGTTAATTTGTACTACTATTTGTGTGTTCCTTCCAATTCTTGGCAT
AATATTGTGATTCTAAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTACGTAGCGTATC

consensusID : consensus_14318#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 251
fasta sequence

                              [ATGTATAGCAGTATATATGCACCTCCATCCATCATCTCTACTCACCTTAGCCTCGTTAATTTGTACTNCCTATTTGTGCTGTTTCCTTCCAATTCTTGGCATAATATTGTGCACTCAAGGATTGATTCAGNNGTTACTCATTACTTAGTTTCTTCCTCCACATATATATGTAGCAAAATCAAAAGTGCACCATTCATAGCATTTCAAGTAAATTACAACTAGCAAATTTCCCAGCGGCCGCGCATTCGATA]

[+] EMBL OS37994              [ATGTATAGCAGTATATATGCACCTCCATCCATCATCTCTACTCACCTTAGCCTCGTTAATTTGTACTNCCTATTTGTGCTGTTTCCTTCCAATTCTTGGCATAATATTGTGCACTCAAGGATTGATTCAGNNGTTACTCATTACTTAGTTTCTTCCTCCACATATATATGTAGCAAAATCAAAAGTGCACCATTCATAGCATTTCAAGTAAATTACAACTAGCAAATTTCCCAGCGGCCGCGCATTCGATA]




>consensus_14318#4
ATGTATAGCAGTATATATGCACCTCCATCCATCATCTCTACTCACCTTAGCCTCGTTAAT
TTGTACTNCCTATTTGTGCTGTTTCCTTCCAATTCTTGGCATAATATTGTGCACTCAAGG
ATTGATTCAGNNGTTACTCATTACTTAGTTTCTTCCTCCACATATATATGTAGCAAAATC
AAAAGTGCACCATTCATAGCATTTCAAGTAAATTACAACTAGCAAATTTCCCAGCGGCCG
CGCATTCGATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14318#2      ------------------------------------------------------------
consensus_14318#4      ------------------------------------------------------------
consensus_14318#0      TGTGGTCAGCTGCATATCCATACTTGTATGTAGAGAAGAATGTAATACTGCTCCAGTAGG 60
consensus_14318#3      ------------------------------------------------------------
consensus_14318#1      ------------------------------------------------------------
                                                                                   

consensus_14318#2      ------------------------------------------------------------
consensus_14318#4      ------------------------------------------------------------
consensus_14318#0      CAGCATCCTCTCCTCTCCTATATCATCATCATATCCAATCCTTGGTTGGTTGGTTCGTTC 120
consensus_14318#3      ------------------------------------------------------------
consensus_14318#1      ----------------------------------------------------------CA 2
                                                                                   

consensus_14318#2      -------------------------------------------------------AGAAG 5
consensus_14318#4      ------------------------------------------------------------
consensus_14318#0      ACAAGGAGGAAAGCCTCGAGCATCATCATCAGTAGGAAGAAGAAGAAGAAGAAGAAGAAG 180
consensus_14318#3      ------------------------------------------------------------
consensus_14318#1      CAAGGAGGAAAGCCTCGAGCATCATCATCAGTAGGAAGAAGAAGAAGAGGAAGAAGAAGA 62
                                                                                   

consensus_14318#2      AAGAGCAACAGGAAGAAGCAAGCAAGAAGAGGAAGAAGAAGCAAGCAAGGAGAAGAAGAT 65
consensus_14318#4      ------------------------------------------------------------
consensus_14318#0      AAGAGCAACAGGAAGAAGCAAGCAAGAAGAGGAAGAAGAAGAAAGCAAGGAGAAGAAGAT 240
consensus_14318#3      ------------------------------------------------------GAAGAT 6
consensus_14318#1      AGAGCAACAGGAAGAAGCAAGCAAGAAAGAGGTAGAAGAAGAAAGCAAGGAGAAGAAGAT 122
                                                                                   

consensus_14318#2      GCAGGACTGGGGTCCGGTGCTGATATCTTGGGTGCTGTTCATCCTGCTGTCGCCGGGGCT 125
consensus_14318#4      ------------------------------------------------------------
consensus_14318#0      GCAGGACTGGGGTCCGGTGCTGATATCTTGGGTGCTGTTCATCCTGCTGTCGCCGGGGCT 300
consensus_14318#3      GCAGGACTGGGGTCCGGTGCTGATATCTTGGGTGCTGTTCATCCTGCTGTCGCCGGGGCT 66
consensus_14318#1      GCAGGACTGGGGTCCGGTGCTGATATCTTGGGTGCTGTTCATCCTGCTGTCGCCGGGGCT 182
                                                                                   

consensus_14318#2      TCTGTTCCAGATACCAGGCAAGTGCAGGTTGATCGAGTTCGGCAAGTTCCAGACCAGCGT 185
consensus_14318#4      ------------------------------------------------------------
consensus_14318#0      TCTGTTCCAGATACCAGGCAAGTGCAGGTTGATCGAGTTCGGCAAGTTCCAGACCAGCGT 360
consensus_14318#3      TCTGTTCCAGATACCAGGCAAGTGCAGGTTGATCGAGTTCGGCAAGTTCCAGACCAGCGT 126
consensus_14318#1      TCTGTTCCAGATACCAGGCAAGTGCAGGTTGATCGAGTTCGGCAAGTTCCAGACCAGCGT 242
                                                                                   

consensus_14318#2      CGTCTCCATCCTCGTCCACACCATCCTCTTCTTCGCCCTCGACGCCATCTTCCTCGTCGC 245
consensus_14318#4      ------------------------------------------------------------
consensus_14318#0      CGTCTCCATCCTCGTCCACACCATCCTCTTCTTCGCCCTCGACGCCATCTTCCTCGTCGC 420
consensus_14318#3      CGTCTCCATCCTCGTCCACACCATCCTCTTCTTCGCCCTCGACGCCATCTTCCTCGTCGC 186
consensus_14318#1      CGTCTCCATCCTCGTCCACACCATCCTCTTCTTCGCCCTCGACGCCATCTTCCTCGTCGC 302
                                                                                   

consensus_14318#2      CATCGGCGTCCAGATCAACCTTGGCTCCTCTCCCTGATTCTCTCTCTTTGTTTTTTTTAG 305
consensus_14318#4      ------------------------------------------------------------
consensus_14318#0      CATCGGCGTCCAGATCAACCTTGGCTCCTCTCCCTGATTCTCTCTCTTTGTTTCTTCTAG 480
consensus_14318#3      CATAAAAAAACAGATCAACCTTGGCTCCTCTCCCTGATTCTCTCTCTAAAATAAATCTAG 246
consensus_14318#1      CATCGGCGTCCAGATCAACCTTGGCTCCTCTCCCTGATTCTCTCTCTTTGTTTCTTCTAG 362
                                                                                   

consensus_14318#2      GTAATCTCAATTGCATATGTATAGCAGTATATATGCACCTCCATCC--ATCAT-CTCTAC 362
consensus_14318#4      ----------------ATGTATAGCAGTATATATGCACCTCCATCC--ATCAT-CTCTAC 41
consensus_14318#0      GTAATCTCAATTGCATATGTATAGCAGTATATATGCACCTCCATCC--ATCAT-CTCTAC 537
consensus_14318#3      GTAATCTCAATTGCATATGTATAGCAGTATATATGCACCTCCATCC--ATCAT-CTCTAC 303
consensus_14318#1      GGCAGCATCAGTACAGTAGCAGCAGGGTCCCAAGGAGGAAGAATTTTGGTGGCATTTTGC 422
                                         * *     **    * *       **     *     * * *

consensus_14318#2      TCACCTTAGC-TCGTTAATTTGTACTAC-TATTTGTGT--GTTCCTTCCAATTC--TTGG 416
consensus_14318#4      TCACCTTAGCCTCGTTAATTTGTACTNCCTATTTGTGCTGTTTCCTTCCAATTC--TTGG 99
consensus_14318#0      TCACCTTAGC-TCGTTAATTTGTACTAC-TATTTGTGT--GTTCCTTCCAATTC--TTGG 591
consensus_14318#3      TCACCTTAGC-TCGTTAATTTGTACTAC-TATTTGTGT--GTTCCTTCCAATTC--TTGG 357
consensus_14318#1      GTGGCACAATGGTAATGGAAAGCATGAAGTAGTTGCCCCATCGCCATTCACAGCGACTGC 482
                           *  *       *     * *     ** ***        ** * **   *   ** 

consensus_14318#2      CATAATATTGTG-ACTCAAAGGAATTGATTTCAGAGTTACTCA--TTACTTAGTTTCTTC 473
consensus_14318#4      CATAATATTGTGCACTCAAGG--ATTGATTCAGNNGTTACTCA--TTACTTAGTTTCTTC 155
consensus_14318#0      CATAATATTGTG-ACTCAAAGGAATTGATTTCAGAGTTACTCA--TTACTTAGTTTCTTC 648
consensus_14318#3      CATAATATTGTG-ATTCTAAA--AAAAAAAAAAAAAAAAAATG--TCATGCCGTTACGTA 412
consensus_14318#1      CCTGGACCTGGACCTGGAACTGGATGGATGTCAAATTAAGTTGAGCTACAAAACAAAAGC 542
                       * *     **        *    *   *          *        *            

consensus_14318#2      CTCCACATATATATGTAGCAAAATCAAAAGTGCACCATTCATAGCATTTCAAGTAAATTA 533
consensus_14318#4      CTCCACATATATATGTAGCAAAATCAAAAGTGCACCATTCATAGCATTTCAAGTAAATTA 215
consensus_14318#0      CTCCACATATATATGTAGCANAATCAAAAGTGCACCATTCATAGCATTTCAAGTAAATTA 708
consensus_14318#3      GCGTATC----------------------------------------------------- 419
consensus_14318#1      TACACATTATGTGCACAGTACAACCGACTGACCATCCAT-ATATCCATCCTATTCTATTC 601
                                                                                   

consensus_14318#2      CAACTAGCAAATTTCCCACGCGGGA----GAAGAGGGG---------------------- 567
consensus_14318#4      CAACTAGCAAATTTCCCA-GCGGCC----GCGCATTCGATA------------------- 251
consensus_14318#0      CAACTAGCAAATTTCCCACGCAAAATTAGGCGAAGCCCATTTTTTTCTT----------- 757
consensus_14318#3      ------------------------------------------------------------
consensus_14318#1      CTGCAACCAAGCTTCAGGATATATCACACATCTATAGAGTGTAGTATTTCACAATCTATA 661
                                                                                   

consensus_14318#2      --------------------------
consensus_14318#4      --------------------------
consensus_14318#0      --------------------------
consensus_14318#3      --------------------------
consensus_14318#1      TTGAACAAATCTCCAAGAAAAAAAAA 687