cluster # 14326

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Oryza sativa
cluster # 14326 cluster # 14326 Sequences # 16 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14326#0 length = 1273 sequences # 8

consensus_14326#1 length = 938 sequences # 7
consensus_14326#2 length = 259 sequences # 1

consensusID : consensus_14326#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1273
fasta sequence

                              [TAAATTAACTCACTAAGGAATAGCTGCGGCTGCGGCGTCGGCTGCA-CAGCACGGCG-CCTCCTCGCCGACGCCGTCGAGG-CGTACTCCACGTGGACGGGCCGCTGCCCCTTCAGCTCCAGCTCGTAGGGCGCCACCTGCTCCATGTCGACGAACGTCAGGTTGGCGCCGCCGTAGACGACGACGTCGCCCGGGAACGCGGCGACCGCGCCGGTCTCGTCGACGACCTTGTCCCCGGCCAGCATCGCCGCCAGCTCGGCGACGTCGGTCTTCGCCGGCGACGAGGCCGCCTCCACGTACCCGACCCTCTGCTCGTTCGCCAGCGACTTGCCGCTCCTGGCGGCCATGTCCGTCCTCACCACGGTCACCGTGGTCACCTCCTTGGACGCCGCCGCCCTGATCTTCGCCACGGCCTGCCATAGGAGCGCCGAGACGAGCTCGAACGTGCCCGCCGCATGGCGTCCCGCCGCGGATTGCAGCTTCTTGAGCGCCGGCTCGGTGACGCGGAAGGAGTACCACGCCATGGCGCGGCCGGCGGGGACGAGCCAGTGGTCCTCGATGGGGCCGACCGGCTTGACGG-AGCGCGGCGGCGCGGCGGCGGCTGCGGCGGGCGCGCGGTCCAGCGGCTTGTTCGCCGGCTCGAGGACGGTGCCCGCGGGCTTCTTGCCGCTCAGTATCTGCGCCCACGTGTTGAAGCAGGCGGTCGCCGACGCCACGTCGCCGATGAGGTGCGCCCAGCTGAAGCCGAGCGCCATGCCACC-GCATTTGAAGCTCGTGACCTGGATGTAGAGGAGCGGCGAGAAGAAGAGCTCGGGGCCGAGCACCTTGTCGTAGCAGAGATGGCGGAGGCGGTCGGGGGATTCGTCGCGGAGCCAGTCGTCGAGGGCGCGGTCGCACCTGG-CCTC-CACGATGCGGACGCCGCAGTCGTTGCACTTGATGT-AGGGGCGGCGCGCCGCGGCGGC-GTCGGCGTCG-TCGCCCTCGGCGCGGCGGATGCGGCCGGCG-ACGGGGAAGTAGGCGTCGAGCCAGGGGAACATGGGGTCCTTGAGCGACTTGATGGTGATCCCGCGCACGGCGTCGCCCGCGGGGTAGTAGTACGCGCCGCGGAGGTAGTGCAGCTTGTAGGCCAGGTCGGCGTCGGCGAGGTCGTAGTTGGCCTCCCCCGTCACCGAGCTCGGCACCACCGTAGACAGCCGGTGCCCGTGCACCGCCGCCGCCGCCGGTGTCTCCTGCCCCTCGAGCACCATGGCAAGGGAATCGCGCTTGCAAGAATGGCGCT]

[+] EMBL BU673054             [TAAATTAACTCACTAAGGAATAGCTGCGGCTGCGGCGTCGGCTGCA CAGCACGGCG CCTCCTCGCCGACGCCGTCGAGG CGTACTCCACGTGGACGGGCCGCTGCCCCTTCAGCTCCAGCTCGTAGGGCGCCACCTGCTCCATGTCGACGAACGTCAGGTTGGCGCCGCCGTAGACGACGACGTCGCCCGGGAACGCGGCGACCGCGCCGGTCTCGTCGACGACCTTGTCCCCGGCCAGCATCGCCGCCAGCTCGGCGACGTCGGTCTTCGCCGGCGACGAGGCCGCCTCCACGTACCCGACCCTCTGCTCGTTCGCCAGCGACTTGCCGCTCCTGGCGGCCATGTCCGTCCTCACCACGGTCACCGTGGTCACCTCCTTGGACGCCGCCGCCCTGATCTTCGCCACGGCCTGCCATAGGAGCGCCGAGACGAGCTCGAACGTGCCCGCCGCATGGCGTCCCGCCGCGGATTGCAGCTTCTTGAGCGCCGGCTCGGTGACGCGGAAGGAGTACCACGCCATGGCGCGGCCGGCGGGGACGAGCCAGTGGTCCTCGATGGGGCCGACCGGCTTGACGG AGCGCGGCGGCGCGGCGGCGGCTGCGGCGGGCGCGCGGTCCAGCGGCTTGTTCGCCGGCTCGAGGACGGTGCCCGCGGGCTTCTTGCCGCTCAGTATCTGCGCCCACGTGTTGAAGCAGGCGGTCGCCGACGCCACGTCGCCGATGAGGTGCGCCCAGCTGATGCCGAGCGCCATGGCACCGGCA TTGAAGCTCGTGAACTGGATGTAGAGGAGCGGCGAGAAG AGAGCTC GGGCCGAGCACC TGTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BI305568             [                                        GCTGCACCAGCACGGCGCCCTCCTCGCCGACGCCGTCGAGGCCGTACTCCACGTGGACGGGCCGCTGCCCCTTCAGCTCCAGCTCGTAGGGCGCCACCTGCTCCATGTCGACGAACGTCAGGTTGGCGCCGCCGTAGACGACGACGTCGCCCGGGAACGCGGCGACCGCGCCGGTCTCGTCGACGACCTTGTCCCCGGCCAGCATCGCCGCCAGCTCGGCGACGTCGGTCTTCGCCGGCGACGAGGCCGCCTCCACGTACCCGACCCTCTGCTCGTTCGCCAGCGACTTGCCGCTCCTGGCGGCCATGTCCGTCCTCACCACGGTCACCGTGGTCACCTCCTTGGACGCCGCCGCCCTGATCTTCGCCACGGCCTGCCATAGGAGCGCCGAGACGAGCTCGAACGTGCCCGCCGCATGGCGTCCCGCCGCGGATTGCAGCTTCTTGAGCGCCGGCTCGGTGACGCGGAAGGAGTACCACGCCATGGCGCGGCCGGCGGGGACGAGCCAGTGGTCCTCGATGGGGCCGACCGGCTTGACGG AGCGCGGCGGCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CB652952             [                                                                                                                                                                                                                                                                                                                                                                                                                                     GGAGCGCCGAGACGAGCTGGAACGTGCCCGCCGCATGGCGTCCCGCCGCGGATTGCAGCTTCTTGAGCGCCGGCTCGGTGACGCGGAAGGAGTACCACGCCATGGCGCGGCCGGCGGGGACGAGCCAGTGGTCCTCGATGGGGCCGACCGGCTTGACGG AGCGCGGCGGCGCGGCGGCGGCTGCGGCGGGCGCGCGGTCCAGCGGCTTGTTCGCCGGCTCGAGGACGGTGCCCGCGGGCTTCTTGCCGCTCAGTATCTGCGCCCACGTGTTGAAGCAGGCGGTCGCCGACGCCACGTCGCCGATGAGGTGCGCCCAGCTGAAGCCGAGCGCCATGCCACC GCATTTGAAGCTCGTGACCTGGATGTAGAGGAGCGGCGAGAAGAAGAGCTCGGGGCCGAGCACCTTGTCGTAGCAGAGATGGCGGAGGCGGTCGGGGGATTCGTCGCGGAGCCAGTCGTCGAGGGCGCGGTCGCACCTGG CCTC CACGATGCGGACGCCGCAGTCGTTGCACTTGATGT AGGGGCGGCGCGCCGCGGCGGC GTCGGCGTCG TCGCCCTCGGCGCGGCGGATGCGGCCGGCG ACGGGGAAGTAGGCGTCGAGCCAGGGGAACATGGGGTCCTTGAGCGACTTGATGGTGATCCCGCGCACGGCGTCGCCCGCGGGGTAGTAGTACGCGCCGCGGAGGTAGTGCAGCTTGTAGGCCAGGTCGGCGTCGGCGAGGTC                                                                                                                                   ]
[-] EMBL CB642728             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AGGAGTACCACGCCATGGCGCGGCCGGCGGGGACGAGCCAGTGGTCCTCGATGGGGCCGACCGGCTTGACGG AGCGCGGCGGCGCGGCGGCGGCTGCGGCGGGCGCGCGGTCCAGCGGCTTGTTCGCCGGCTCGAGGACGGTGCCCGCGGGCTTCTTGCCGCTCAGTATCTGCGCCCACGTGTTGAAGCAGGCGGTCGCCGACGCCACGTCGCCGATGAGGTGCGCCCAGCTGAAGCCGAGCGCCATGCCACC GCATTTGAAGCTCGTGACCTGGATGTAGAGGAGCGGCGAGAAGAAGAGCTCGGGGCCGAGCACCTTGTCGTAGCAGAGATGGCGGAGGCGGTCGGGGGATTCGTCGCGGAGCCAGTCGTCGAGGGCGCGGTCGCACCTGG CCTC CACGATGCGGACGCCGCAGTCGTTGCACTTGATGT AGGGGCGGCGCGCCGCGGCGGC GTCGGCGTCG TCGCCCTCGGCGCGGCGGATGCGGCCGGCG ACGGGGAAGTAGGCGTCGAGCCAGGGGAACATGGGGTCCTTGAGCGACTTGATGGTGATCCCGCGCACGGCGTCGCCCGCGGGGTAGTAGTACGCGCCGCGGAGGTAGTGCAGCTTGTAGGCCAGGTCGGCGTCGGCGAGGTCGTAGTTGGCCTCCCCCGTCACCGAGCTCGGCACCACCGTAGACAGCCGGTGCCCGTGCACCGCCGCCGCCGCCGGTGTCTCCTGCCCCTCGAGCACCATGGCAAGGGAATCGCGCTTGC            ]
[-] EMBL CB655055             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CATGGCGCGGCCGGCGGGGACGAGCCAGTGGTCCTCGATGGGGCCGACCGGCTTGACGG AGCGCGGCGGCGCGGCGGCGGCTGCGGCGGGCGCGCGGTCCAGCGGCTTGTTCGCCGGCTCGAGGACGGTGCCCGCGGGCTTCTTGCCGCTCAGTATCTGCGCCCACGTGTTGAAGCAGGCGGTCGCCGACGCCACGTCGCCGATGAGGTGCGCCCAGCTGAAGCCGAGCGCCATGCCACC GCATTTGAAGCTCGTGACCTGGATGTAGAGGAGCGGCGAGAAGAAGAGCTCGGGGCCGAGCACCTTGTCGTAGCAGAGATGACGGAGGCGGTCGGGGGATTCGTCGCGGAGCCAGTCGTCGAGGGCGCGGTCGCACCTGG CCTC CACGATGCGGACGCCGCAGTCGTTGCACTTGATGT AGGGGCGGCGCGCCGCGGCGGC GTCGGCGTCG TCGCCCTCGGCGCGGCGGATGCGGCCGGCG ACGGGGAAGTAGGCGTCGAGCCAGGGGAACATGGGGTCCTTGAGCGACTTGATGGTGATCCCGCGCACGGCGTCGCCCGCGGGGTAGTAGTACGCGCCGCGGAGGTAGTGCAGCTTGTAGGCCAGGTCGGCGTCGGCGAGGTCGTAGTTGGCCTCCCCCGTCACCGAGCTCGGCACCACCGTAGACAGCCGGTGCCCGTGCACCGCCGCCGCCGCCGGTGTCTCCTGCCCCTCGAGCACCATGGCAAGGGGATCGC                  ]
[-] EMBL CB659399             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CGGCCGGCGGGGACGAGCCAGTGGTCCTCGAGGGGGCCGACCGGCTTGACGG AGCGCGGCGGCGCGGCGGCGGCTGCGGCGGGCGCGCGGTCCAGCGGCTTGTTCGCCGGCTCGAGGACGGTGCCCGCGGGCTTCTTGCCGCTCAGTATCTGCGCCCACGTGTTGAAGCAGGCGGTCGCCGACGCCACGTCGCCGATGAGGTGCGCCCAGCTGAAGCCGAGCGCCATGCCACC GCATTTGAAGCTCGTGACCTGGATGTAGAGGAGCGGCGAGAAGAAGAGCTCGGGGCCGAGCACCTTGTCGTAGCAGAGATGGCGGAGGCGGTCGGGGGATTCGTCGCGGAGCCAGTCGTCGAGGGCGCGGTCGCACCTGG CCTC CACGATGCGGACGCCGCAGTCGTTGCACTTGATGT AGGGGCGGCGCGCCGCGGCGGC GTCGGCGTCG TCGCCCTCGGCGCGGCGGATGCGGCCGGCG ACGGGGAAGTAGGCGTCGAGCCAGGGGAACATGGGGTCCTTGAGCGACTTGATGGTGATCCCGCGCACGGCGTCGCCCGCGGGGTAGTAGTACGCGCCGCGGAGGTAGTGCAGCTTGTAGGCCAGGTCGGCGTCGGCGAGGTCGTAGTTGGCCTCCCCCGTCACCGAGCTCGGCACCACCGTAGACAGCCGGTGCCCGTGCACCGCCGCCGCCGCCGGTGTCTCCTGCCCCTCGAGCACCATGGCAAGGGAATCGCGCTTGCA           ]
[-] EMBL AU032555             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GACCGGCTTGACGGTAGCGCGTCGGCGCTGCGGCGGCTGCGTCGTGCGCNCGGTCCAGCGGCTTGTTCTCCGGNTCGAGGACGGTGCCCGCGGGCTTCTTGCCGCTCAGTATCTGCGCCCACGTGTTGAAGCAGGCGGTCGCCGACGCCACGTCGCCGATGAGGTGCGCCCAGCTGAAGCCGAGCGCCATGCCACC GCATTTGAAGCTCGTGACCTGGATGTAGAGGAGCGGCGAGAAGAAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL AU102117             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               caattTGGCCCTCNCACTATGCGGACCCCAAATTCTTTGCACTTGATTTAAGGGGCGGCGCNCCGCGGCGGCNTTCGGCGTCGTTCCCCCTCGGCGCGGCGGATGCGGCCGGCGAACGGGGAANTAGGCGTCGAGCCAGGGGAACATGGGGTCCTTGAGCGACTTGATGGTGATCCCGCGCACGGCGTCGCCCGCGGGGTAGTAGTACGCGCCGCGGAGGTAGTGCAGCTTGTAGGCCAGGTCGGCGTCGGCGAGGTCGTAGTTGGCCTCCCCCGTCACCGAGCTCGGCACCACCGTAGACAGCCGGTGCCCGTGCACCGCCGCCGCCGCCGGTGTCTCCTGCCCCTCGAGCACCATGGCAAGGGAATCGCGCTTGCAAGAATGGCGCT]




>consensus_14326#0
TAAATTAACTCACTAAGGAATAGCTGCGGCTGCGGCGTCGGCTGCACAGCACGGCGCCTC
CTCGCCGACGCCGTCGAGGCGTACTCCACGTGGACGGGCCGCTGCCCCTTCAGCTCCAGC
TCGTAGGGCGCCACCTGCTCCATGTCGACGAACGTCAGGTTGGCGCCGCCGTAGACGACG
ACGTCGCCCGGGAACGCGGCGACCGCGCCGGTCTCGTCGACGACCTTGTCCCCGGCCAGC
ATCGCCGCCAGCTCGGCGACGTCGGTCTTCGCCGGCGACGAGGCCGCCTCCACGTACCCG
ACCCTCTGCTCGTTCGCCAGCGACTTGCCGCTCCTGGCGGCCATGTCCGTCCTCACCACG
GTCACCGTGGTCACCTCCTTGGACGCCGCCGCCCTGATCTTCGCCACGGCCTGCCATAGG
AGCGCCGAGACGAGCTCGAACGTGCCCGCCGCATGGCGTCCCGCCGCGGATTGCAGCTTC
TTGAGCGCCGGCTCGGTGACGCGGAAGGAGTACCACGCCATGGCGCGGCCGGCGGGGACG
AGCCAGTGGTCCTCGATGGGGCCGACCGGCTTGACGGAGCGCGGCGGCGCGGCGGCGGCT
GCGGCGGGCGCGCGGTCCAGCGGCTTGTTCGCCGGCTCGAGGACGGTGCCCGCGGGCTTC
TTGCCGCTCAGTATCTGCGCCCACGTGTTGAAGCAGGCGGTCGCCGACGCCACGTCGCCG
ATGAGGTGCGCCCAGCTGAAGCCGAGCGCCATGCCACCGCATTTGAAGCTCGTGACCTGG
ATGTAGAGGAGCGGCGAGAAGAAGAGCTCGGGGCCGAGCACCTTGTCGTAGCAGAGATGG
CGGAGGCGGTCGGGGGATTCGTCGCGGAGCCAGTCGTCGAGGGCGCGGTCGCACCTGGCC
TCCACGATGCGGACGCCGCAGTCGTTGCACTTGATGTAGGGGCGGCGCGCCGCGGCGGCG
TCGGCGTCGTCGCCCTCGGCGCGGCGGATGCGGCCGGCGACGGGGAAGTAGGCGTCGAGC
CAGGGGAACATGGGGTCCTTGAGCGACTTGATGGTGATCCCGCGCACGGCGTCGCCCGCG
GGGTAGTAGTACGCGCCGCGGAGGTAGTGCAGCTTGTAGGCCAGGTCGGCGTCGGCGAGG
TCGTAGTTGGCCTCCCCCGTCACCGAGCTCGGCACCACCGTAGACAGCCGGTGCCCGTGC
ACCGCCGCCGCCGCCGGTGTCTCCTGCCCCTCGAGCACCATGGCAAGGGAATCGCGCTTG
CAAGAATGGCGCT

consensusID : consensus_14326#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 938
fasta sequence

                              [TCTTTTTTTTTTTTACTGTGTGCAATTCACCAGAGTATTAAATTACCCTATGCAATACTACTAGCAGTAGCAAATGCTTGATCTGAATTCTACCGGTATAAATCTCATCTGAATTCAACCGTAGTAACAATGCTTGATCCCAGTGAATTACCCAGTCTAAAAAATAATAATGCTTGATCTGAATTACCGTACGCCCAAAAGTACTTACAATAATGTATTCTGAATTTCTGACAAGTATACTGTGGTATATAACACTGCATTTCCATTCTGGCACTCGAACAACTTATTACGGTACATCATGATACAGTACAGACTTCGTAAATTCCAGAGAAAAAAGAGGCGCCAAGATTGTCCTACGCTCGTCGAAATTTCATACCAGCCGGATCGCCGGTCGCCGGCGCCGCGTGTTAAGACGACGCGCGGCACGGCGGCGCTCCGGGCTCAGGCGTCTTGCAGCAGCAGGAGCGTGCTCCCGAGCGCGGCGCGGAGGCTGTCGACCTCGTCCCTGGGGATCACCACCGTGACGACGCGGCCGCGGCCGCCGGCGTCCGGCTGCACCAGCACGGCGCCCTCCTCGCCGACGCCGTCGAGGCCGTACTCCACGTGGACGGGCCGCTGCCCCTTCAGCTCCAGCTCGTAGGGCGCCACCTGCTCCATGTCGACGAACGTCAGGTTGGCGCCGCCGTAGACGACGACGTCGCCCGGGAACGCGGCGACCGCGCCGGTCTCGTCGACGACCTTGTCCCCGGCCAGCATCGCCGCCAGCTCGGCGACGTCGGTCTTCGCCGGCGACGAGGCCGCCTCCACGTACCCGACCCTCTGCTCGTTCGCCAGCGACTTGCCGCTCCTGGCGGCCATGTCCGTCCTCACCACGGTCACCGTGGTCACCTCCTTGGACGCCGCCGCCCTGATCTTCGCCACGGCCTGCCATATGAGCG]

[+] EMBL CB655056             [TCTTTTTTTTTTTTACTGTGTGCAATTCACCAGAGTATTAAATTACCCTATGCAATACTACTAGCAGTAGCAAATGCTTGATCTGAATTCTACCGGTATAAATCTCATCTGAATTCAACCGTAGTAACAATGCTTGATCCCAGTGAATTACCCAGTCTAAAAAATAATAATGCTTGATCTGAATTACCGTACGCCCAAAAGTACTTACAATAATGTATTCTGAATTTCTGACAAGTATACTGTGGTATATAACACTGCATTTCCATTCTGGCACTCGAACAACTTATTACGGTACATCATGATACAGTACAGACTTCGTAAATTCCAGAGAAAAAAGAGGCGCCAAGATTGTCCTACGCTCGTCGAAATTTCATACCAGCCGGATCGCCGGTCGCCGGCGCCGCGTGTTAAGACGACGCGCGGCACGGCGGCGCTCCGGGCTCAGGCGTCTTGCAGCAGCAGGAGCGTGCTCCCGAGCGCGGCGCGGAGGCTGTCGACCTCGTCCCTGGGGATCACCACCGTGACGACGCGGCCGCGGCCGCCGGCGTCCGGCTGCACCAGCACGGCGCCCTCCTCGCCGACGCCGTCGAGGCCGTACTCCACGTGGACGGGCCGCTGCCCCTTCAGCTCCAGCTCGTAGGGCGCCACCTG                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB659400             [                                                                                                                                                             TAAAAAATAATAATGCTTGATCTGAATTACCGCCCGCCCAAAAGTACTTACAATAATGTATTCTGAATTTCTGACAAGTATACTGTGGTATATAACACTGCATTTCCATTCTGGCACTCGAACAACTTATTACGGTACATCATGATACAGTACAGACTTCGTAAATTCCAGAGAAAAAAGAGGCGCCAAGATTGTCCTACGCTCGTCGAAATTTCATACCAGCCGGATCGCCGGTCGCCGGCGCCGCGTGTTAAGACGACGCGCGGCACGGCGGCGCTCCGGGCTCAGGCGTCTTGCAGCAGCAGGAGCGTGCTCCCGAGCGCGGCGCGGAGGCTGTCGACCTCGTCCCTGGGGATCACCACCGTGACGACGCGGCCGCGGCCGCCGGCGTCCGGCTGCACCAGCACGGCGCCCTCCTCGCCGACGCCGTCGAGGCCGTACTCCACGTGGACGGGCCGCTGCCCCTTCAGCTCCAGCTCGTAGGGCGCCACCTGCTCCATGTCGACGAACGTCAGGTTGGCGCCGCCGTAGACGACGACGTCGCCCGGGAACGCGGCGACCGCGCCGGTCTCGTCGACGACCTTGTCCCCGGCCAGCATCGCCGCCAGCTCGGCGACGTCGGTCTTCGCCGGCGACGAGGCCGCCTCCACGTACCCGACCCTCTGCTCGTTCGCCAGCGACTTGCCGCTCCTGGCGGCCATGTCCGTCCTCACCACGGTCACCGTGGTCACCTCCTTGGACGCCGCCG                                 ]
[+] EMBL CB642729             [                                                                                                                                                                      ATAATCCTTGATCTGAATTACCGTACGCCCAAAAGTACTTACAATAATGTATTCTGAATTTCTGACAAGTATACTGTGGTATATAACACTGCATTTCCATTCTGGCACTCGAACAACTTATTACGGTACATCATGATACAGTACAGACTTCGTAAATTCCAAAAAAAAAAGAGGCGCCAAGATTGTCCTACGCTCGTCGAAATTTCATACCAGCCGGATCGCCGGTCGCCGGCGCCGCGTGTTAAGACGACGCGCGGCACGGCGGCGCTCCGGGCTCAGGCGTCTTGCAGCAGCAGGAGCGTGCTCCCGAGCGCGGCGCGGAGGCTGTCGACCTCGTCCCTGGGGATCACCACCGTGACGACGCGGCCGCGGCCGCCGGCGTCCGGCTGCACCAGCACGGCGCCCTCCTCGCCGACGCCGTCGAGGCCGTACTCCACGTGGACGGGCCGCTGCCCCTTCAGCTCCAGCTCGTAGGGCGCCACCTGCTCCATGTCGACGAACGTCAGGTTGGCGCCGCCGTAAACGACGACGTCGCCCGGGAACGCGGCGACCGCGCCGGTCTCGTCGACGACCTTGTCCCCGGCCAGCATCGCCGCCAGCTCGGCGACGTCGGTCTTCGCCGGCGACGAGGCCGCCTCCACGTACCCGACCCTCTGCTCGTTCGCCAGCGACTTGCCGCTCCTGGCGGCCATGTCC                                                                            ]
[-] EMBL CB683254             [                                                                                                                                                                        AATGCTTGATCTGAATTACCGTACGCCCAAAAGTACTTACAATAATGTATTCTGAATTTCTGACAAGTATACTGTGGTATATAACACTGCATTTCCATTCTGGCACTCGAACAACTTATTACGGTACATCATGATACAGTACAGACTTCGTAAATTCCAGAGAAAAAAGAGGCGCCAAGATTGTCCTACGCTCGTAGAAATTTCATACCAGCCGGATCGCCGGTCGCCGGCGCCGCGTGTTAAGACGACGCGCGGCACGGCGGCGCTCCGGGCTCAGGCGTCTTGCAGCAGCAGGAGCGTGCTCCCGAGCGCGGCGCGGAGGCTGTCGACCTCGTCCCTGGGGATCACCACCGTGACGACGCGGCCGCGGCCGCCGGCGTCCGGCTGCACCAGCACGGCGCCCTCCTCGCCGACGCCGTCGAGGCCGTACTCCACGTGGACGGGCCGCTGCCCCTTCAGCTCCAGCTCGTAGGGCGCCACCTGAGGCATG                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB652953             [                                                                                                                                                                                                                                                   GGTATATAACACTGGATTTCCATTCTGGCACTCAAACAAATTATTACGGTACATCATGATACAGTACAGACTTCGTAAATTCCACAGAAAAAAGAGGCGCCAAGATTGTCCTACGCTCGTCGAAATTTACTACCAGCCGGATCGCCGGGCGCCGGAGCCCCGTGTTAAGACGACCCTCGGCACGGCGGAGCTCCAGGATCACGAGTCTTGCAGCAGCAGGAGCGTGCTCCCGAGCGCGGCGCGGAGGCTGTCCACCTCGTCCCTGGGGATCACCAACGTGACCACCCGGCCGCGGCCGCCGGAGTACGGCTGCAACAGCACGGCGCCCTCCTCGCCGACGCCGTCGAGGCCGTACTCCACGTGGACGGGCCGCTGCCCCTTCAGCTCCAGCTCGTAGGGCGCCACCTGCTCCATGTCGACCAACGTCAGGTTGGCGCCGCCGTAGACGAACACGTCGCCCGGGAACGCGGGGACCGCGCCGGTCTCGTCGACAACCTTGTCCCCGGACAGCATCGCCGCCAGCTCGGAGACGTCGGTCTTCGCCGGCGACGAGGCCGCCTCCACGTACCCGACCCTCTGCTCGTTCGCCAGCGACTTGCCGCTCCTGGCGGACATGTCCGTCCTCACCACGGTCACCGTGGTCACCTCCTTGGACGCCGCCGCCCTGATCTTCGCCACGGCCTGCCATATGAGCG]
[-] EMBL C96759               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CTGCACCAGCACGGCGCCCTCCTCGCCGACGCCGTCGAGGCCGTACTCCACGTGGACGGGCCGCTGCCCCTTCAGCTCCAGCTCGTAGGGCGCCACCTGCTCCATGTCGACGAACGTCAGGTTGGCGCCGCCGTAGACGACGACGTCGCCCGGGAACGCGGCGACCGCGCCGGTCTCGTCGACGACCTTGTCCCCGGCCAGCATCGCCGCCAGCTCGGCGACGTCGGTCTTCGCCGGCGACGAGGCCGCCTCCACGTACCCGACCCTCTGCTCGTTCGCCAGCGACTTGCCGCTCCTGGCGGCCATGTCCGTCCTCACCACGGTCACCGTGGTCAC                                                  ]
[-] EMBL AU029552             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TGCACCAGCACGGCGCCCTCCTCGCCGACGCCGTCGAGGCCGTACTCCACGTGGACGGGCCGCTGCCCCTTCAGCTCCAGCTCGTAGGGCGCCACCTGCTCCATGTCGACGAACGTCAGGTTGGCGCCGCCGTAGACGACGACGTCGCCCGGGAACGCGGCGACCGCGCCGGTCTCGTCGACGACCTTGTCCCCGGCCAGCATCGCCGCCAGCTCGGCGACGTCGGTCTTCGCCGGCGACGAGGCCGCCTCCACGTACCCGACCCTCTGCTCGTTCGCCAGCGACTTGCCGC                                                                                             ]




>consensus_14326#1
TCTTTTTTTTTTTTACTGTGTGCAATTCACCAGAGTATTAAATTACCCTATGCAATACTA
CTAGCAGTAGCAAATGCTTGATCTGAATTCTACCGGTATAAATCTCATCTGAATTCAACC
GTAGTAACAATGCTTGATCCCAGTGAATTACCCAGTCTAAAAAATAATAATGCTTGATCT
GAATTACCGTACGCCCAAAAGTACTTACAATAATGTATTCTGAATTTCTGACAAGTATAC
TGTGGTATATAACACTGCATTTCCATTCTGGCACTCGAACAACTTATTACGGTACATCAT
GATACAGTACAGACTTCGTAAATTCCAGAGAAAAAAGAGGCGCCAAGATTGTCCTACGCT
CGTCGAAATTTCATACCAGCCGGATCGCCGGTCGCCGGCGCCGCGTGTTAAGACGACGCG
CGGCACGGCGGCGCTCCGGGCTCAGGCGTCTTGCAGCAGCAGGAGCGTGCTCCCGAGCGC
GGCGCGGAGGCTGTCGACCTCGTCCCTGGGGATCACCACCGTGACGACGCGGCCGCGGCC
GCCGGCGTCCGGCTGCACCAGCACGGCGCCCTCCTCGCCGACGCCGTCGAGGCCGTACTC
CACGTGGACGGGCCGCTGCCCCTTCAGCTCCAGCTCGTAGGGCGCCACCTGCTCCATGTC
GACGAACGTCAGGTTGGCGCCGCCGTAGACGACGACGTCGCCCGGGAACGCGGCGACCGC
GCCGGTCTCGTCGACGACCTTGTCCCCGGCCAGCATCGCCGCCAGCTCGGCGACGTCGGT
CTTCGCCGGCGACGAGGCCGCCTCCACGTACCCGACCCTCTGCTCGTTCGCCAGCGACTT
GCCGCTCCTGGCGGCCATGTCCGTCCTCACCACGGTCACCGTGGTCACCTCCTTGGACGC
CGCCGCCCTGATCTTCGCCACGGCCTGCCATATGAGCG

consensusID : consensus_14326#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 259
fasta sequence

                              [TAGCCTTCGAACCNAGGGNACATTGGGTCCTTTAACGACTTGATTGTTGATCCCCGCGCACGGCTTCGCCCGCGGGNTNATNGTACGCGCCGCGGAGGTNGTGCAGCTTGTAGGCCAGGTCGGCGTCGGCGAGGTCGTAGTTGGCCTCCCCCGTCACCGAGCTCGGCACCACCGTAGACAGCCGTGCCCGTGCACCGCCGCCGCCGCCGGTGTCTCCTGCCCNTCGAGCACCATGGCAAGGGAATCGCGCTTGCAAGAA]

[-] EMBL C74404               [TAGCCTTCGAACCNAGGGNACATTGGGTCCTTTAACGACTTGATTGTTGATCCCCGCGCACGGCTTCGCCCGCGGGNTNATNGTACGCGCCGCGGAGGTNGTGCAGCTTGTAGGCCAGGTCGGCGTCGGCGAGGTCGTAGTTGGCCTCCCCCGTCACCGAGCTCGGCACCACCGTAGACAGCCGTGCCCGTGCACCGCCGCCGCCGCCGGTGTCTCCTGCCCNTCGAGCACCATGGCAAGGGAATCGCGCTTGCAAGAA]




>consensus_14326#2
TAGCCTTCGAACCNAGGGNACATTGGGTCCTTTAACGACTTGATTGTTGATCCCCGCGCA
CGGCTTCGCCCGCGGGNTNATNGTACGCGCCGCGGAGGTNGTGCAGCTTGTAGGCCAGGT
CGGCGTCGGCGAGGTCGTAGTTGGCCTCCCCCGTCACCGAGCTCGGCACCACCGTAGACA
GCCGTGCCCGTGCACCGCCGCCGCCGCCGGTGTCTCCTGCCCNTCGAGCACCATGGCAAG
GGAATCGCGCTTGCAAGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14326#0      TAAATTAACTCACTAAGGAATAGCTGCGGCTGCGGCGTCGGCTGCACAGCACGGCGCCTC 60
consensus_14326#2      ------------------------------------------------------------
consensus_14326#1      ------------------------------------------------------------
                                                                                   

consensus_14326#0      CTCGCCGACGCCGTCGAGGCGTACTCCACGTGGACGGGCCGCTGCCCCTTCAGCTCCAGC 120
consensus_14326#2      ------------------------------------------------------------
consensus_14326#1      ------------------------------------------------------------
                                                                                   

consensus_14326#0      TCGTAGGGCGCCACCTGCTCCATGTCGACGAACGTCAGGTTGGCGCCGCCGTAGACGACG 180
consensus_14326#2      ------------------------------------------------------------
consensus_14326#1      ------------------------------------------------------------
                                                                                   

consensus_14326#0      ACGTCGCCCGGGAACGCGGCGACCGCGCCGGTCTCGTCGACGACCTTGTCCCCGGCCAGC 240
consensus_14326#2      ------------------------------------------------------------
consensus_14326#1      ------------------------------------------------------------
                                                                                   

consensus_14326#0      ATCGCCGCCAGCTCGGCGACGTCGGTCTTCGCCGGCGACGAGGCCGCCTCCACGTACCCG 300
consensus_14326#2      ------------------------------------------------------------
consensus_14326#1      ------------------------------------------------------------
                                                                                   

consensus_14326#0      ACCCTCTGCTCGTTCGCCAGCGACTTGCCGCTCCTGGCGGCCATGTCCGTCCTCACCACG 360
consensus_14326#2      ------------------------------------------------------------
consensus_14326#1      ----------------------------------------TCTTTTTTTTTTTTACTGTG 20
                                                                                   

consensus_14326#0      GTCACCGTGGTCACCTCCTTGGACGCCGCCGCCCTGATCTTCGCCACGGCCTGCCATAGG 420
consensus_14326#2      ------------------------------------------------------------
consensus_14326#1      TGCAATTCACCAGAGTATTAAATTACCCTATGCAATACTACTAGCAGTAGCAAATGCTTG 80
                                                                                   

consensus_14326#0      AGCGCCGAGACGAGCTCGAACGTGCCCGCCGCATGGCGTCCCGCCGCGGATTGCAGCTTC 480
consensus_14326#2      ------------------------------------------------------------
consensus_14326#1      ATCTGAATTCTACCGGTATAAATCTCATCTGAATTCAACCGTAGTAACAATGCTTGATCC 140
                                                                                   

consensus_14326#0      TTGAGCGCCGGCTCGGTGACGCGGAAGGAGTACCACGCCATGGCGCGGCCGGCGGGGACG 540
consensus_14326#2      ------------------------------------------------------------
consensus_14326#1      CAGTGAATTACCCAGTCTAAAAAATAATAATGCTTGATCT--GAATTACCGTACGCCCAA 198
                                                                                   

consensus_14326#0      AGCCAGTGGTCCTCGATGGGGCCGACCGGCTTGACGGAGCGCGGCGGCGCGGCG-GCGGC 599
consensus_14326#2      ------------------------------------------------------------
consensus_14326#1      AAGTACTTACAATAATGTATTCTGAATTTCTGACAAGTATACTGTGGTATATAACACTGC 258
                                                                                   

consensus_14326#0      TGCGGCGGGCGCGCGGTCCAGCGGCTTGTTCGCCGGCTCGAGGACGGTGCCCGCGGGCTT 659
consensus_14326#2      ------------------------------------------------------------
consensus_14326#1      ATTTCCATTCTGGCACTCGAACAACTTATTACGGTACATCATGATACAGTACAGACTTCG 318
                                                                                   

consensus_14326#0      CTTGCCGCTCAGTATCTGCGCCCACGTGTTGAAGCAGGCGGTCGCCGACGCCACGTCGCC 719
consensus_14326#2      ------------------------------------------------------------
consensus_14326#1      TAAATTCCAGAGAAAAAAGAGGCGCCAAGATTGTCCTACGCTCGTCGAAATTTCATACCA 378
                                                                                   

consensus_14326#0      GATGAGGTGCGCCCAGCTGAAGCCGAGCGCCATGCCACCGCATTTGAAGCTCGTGACCTG 779
consensus_14326#2      ------------------------------------------------------------
consensus_14326#1      GCCGGATCGCCGGTCGCCGGCGCCGCGTGTTAAGACGACGCGCGGCACGGCGGCGCTCCG 438
                                                                                   

consensus_14326#0      GATGTAGAGGAGCGGCGAGAAGAAGAGCTCGGGGCCGAGCACCTTGTCGTAGCAGAGATG 839
consensus_14326#2      ------------------------------------------------------------
consensus_14326#1      GGCTCAGGCGTCTTGCAGCAGCAGGAGCGTGCTCCCGAGCGCGGCGCGGAGGCTGTCGAC 498
                                                                                   

consensus_14326#0      GCGGAGGCGGTCGGGGGATTCGTCGCGGAGCCAGTCGTCGAGGGCGCGGTCGCACCTGGC 899
consensus_14326#2      ------------------------------------------------------------
consensus_14326#1      CTCGTCCCTGGGGATCACCACCGTGACGACGCGGCCGCGGCCGCCGGCGTCCGGCTGCAC 558
                                                                                   

consensus_14326#0      CTCCACGATGCGGACGCCGCAGTCGTTGCACTTGATGTA----GGGGCGGCGCGCCGCGG 955
consensus_14326#2      ------------------------------------------------------------
consensus_14326#1      CAGCACGGCGCCCTCCTCGCCGACGCCGTCGAGGCCGTACTCCACGTGGACGGGCCGCTG 618
                                                                                   

consensus_14326#0      CGGCGTCGGCGTCGTCGCCCTCGGCGCGGCGGATGCG--GCCGGCGACGGGGAAGTAGGC 1013
consensus_14326#2      -------------------------------------------------------TAGCC 5
consensus_14326#1      CCCCTTCAGCTCCAGCTCGTAGGGCGCCACCTGCTCCATGTCGACGAACGTCAGGTTGGC 678
                                                                              * * *

consensus_14326#0      GTCGAGCCAGGGGAACATGGGGTCCTTGAGCGACTTGATGGT---GATCCC-GCGCACGG 1069
consensus_14326#2      TTCGAACCNAGGGNACATTGGGTCCTTTAACGACTTGATTGTT--GATCCCCGCGCACGG 63
consensus_14326#1      GCCGCCGTAGACGACGACGTCGCCCGGGAACGCGGCGACCGCGCCGGTCTC-GTCGACGA 737
                         **        *   *    * **   * **    **  *    * ** * *   *** 

consensus_14326#0      CGTCGCCCGCGGGGTAGTAGTACGCGCCGCGGAGGTAGTGCAGCTTGTAGGCCAGGTCGG 1129
consensus_14326#2      CTTCGCCCGCGGGNTNATNGTACGCGCCGCGGAGGTNGTGCAGCTTGTAGGCCAGGTCGG 123
consensus_14326#1      CCTTGTCC-CCGGCCAGCATCGC-CGCCAGCTCGGCGACGTCGGTCTTCGCCGGCGACGA 795
                       * * * ** * **         * ****     **    *  * *  * * *   * ** 

consensus_14326#0      CGTCGGCGAGGTCGTAGTTGGCCTCC--CCCGTCACCGAGCTCGGCACCACCGTAGACAG 1187
consensus_14326#2      CGTCGGCGAGGTCGTAGTTGGCCTCC--CCCGTCACCGAGCTCGGCACCACCGTAGACAG 181
consensus_14326#1      GGCCGCCTCCA-CGTACCCGACCCTCTGCTCGTTCGCCAGCGACTTGCCGCTCCTGGCGG 854
                        * ** *     ****   * **  *  * ***   * ***      ** *    * * *

consensus_14326#0      CCGGTGCCCGTGC--ACCGCCGCCGCCGCCGGTGTCTCCTGCCCCTCGAGCACCATGGCA 1245
consensus_14326#2      CCG-TGCCCGTGC--ACCGCCGCCGCCGCCGGTGTCTCCTGCCCNTCGAGCACCATGGCA 238
consensus_14326#1      CCA-TGTCCGTCCTCACCACGGTCACCGTGGTCACCTCCTTGGACGCCGCCGCCCTGATC 913
                       **  ** **** *  *** * * * ***  *    *****      *   * ** **   

consensus_14326#0      AGGGAATCGCGCTTGCAAGAATGGCGCT 1273
consensus_14326#2      AGGGAATCGCGCTTGCAAGAA------- 259
consensus_14326#1      TTCGCCACG-GCCTGCCATATGAGCG-- 938
                          *   ** ** *** * *