Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1433 cluster # 1433       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1433#0 length = 1710 sequences # 2  

consensusID : consensus_1433#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1710
fasta sequence
                              [GTAGCTCATGCATATTAAAAGGGCTAAACACCAACCAAACCCTTTGCTCCTCCATGACAACAATGTCATGTTGCTAGCAGCTAGATCAAGAATATATTCAAGATAGTTAATTGCTGCATATAGGTTTTGCAAGTTGCAGAACTTGCAGCTATATTGTTGTTACACTAGCTGTTCATATCTTGGATTCCAGTGATATCTAGAGTGCATGCATGGGGCATCACTCTTGCTGCAACCAGCAGAAGGTGAAGAGGGGCCTCTGGTCTCCTGAGGAAGATGAGAAGCTCATCAGATACATCACCACCCATGGCTATGGCTGCTGGAGCGAGGTCCCGGAGAAAGCCGGTTTGCAGCGATGTGGGAAGAGCTGCCGGCTCCGGTGGATCAACTACCTGAGACCGGACATCCGGCGAGGGCGGTTCACGGCGGAGGAGGAGAAGCTCATCATCAGCCTGCACGCCATTGTTGGCAACAGGTGGGCCCACATTGCCAGCCACCTGCCTGGCCGGACCGACAACGAGATCAAGAACTACTGGAATTCATGGATCAAGAAGAAGATTCGCAAGCCGGCGGCGGCCGCCGCCGCGGCGACCACGACGAGCCCGAACAACCCGCCGCCGTGCAGCACGGCGACGTCGGACCACCACCACCTGCCGCCGCCGGCGTTCGGCGGCGCTGATCACCACCTGCAGCTCGACGCCATCATCAACCAGAACCTGATATCATCCCTGCCGCCGAAGCTCGCCACCGGCGACGACTCGCCGCCGGCGGTGCCCGGGCTGCCGCACCACTGCCCGCTCTTCATGTTCGACACCACCACCACCGGCGCCGGCGGCGCCATCAGCCCGCCGCCGCCGTCATCACTGATCCCAACCCACCTCCACCACCACCACCACCCGTTCATCGCCAGCTTCACGGCGGCGATGGCCGCCGACACGCCGAGCTACCTGCCCCCGCTGGTCGACGGCATGGCAGCCATGGGAGCGGCCATGGATTGCAGCTTAGAAGATGGCCAAACAGCCGCCGCCATGGCCGCCACCAATGGCTACTACCAGCATCATCAGAAGCATCAGCAGCTGGAGATTGAGCTGGAGGAGGAGGAGCAGAGGCAGCTAGGGCATCATCATCATCAGCATCACCATGAGCATGAGCATGAAAATCATCAGTGGGATGAAGAAGAAGCACAGCATCTGCTGATGTGGGATCAAGAAGTACTAACATCATCCAACTTGGAGGCCATGCAAAGTGGTGCTCATTCCCTCCTTTTTATGGGACCAAATGACCATGATTAAGTTGGTAATAATAACCTATGTCTACCCCCCCCCCAATTTTTTTTCTTTTTGGGAAAAAAAAACTTGCATGTGCATATTTTGCATCTCACAACATCTGATCCCATCTCTGATCTGATCTTGATCTCCCTTTGATCAATCTAGCTCTCACTACTACCCCATCTGATCTGTCTATACATGAAATAATGAGGTTTTGCAAATTAAAGGCGCGCGTAATTTATTGTGTTTTGGATTTTTTTTCTATCTCTCTCCAAGAGCTTTTATTTTGGTTTTTTTACTTTTTTTTTTGGATTGGAGTGTGAAGACTGAATAGTGTGTGTCAATTGGGTTTTTTGTAAAGAGACCACCTTGTATGAGTGCATGGCATGGCACTTTGGAGTGTGTAATTTGATTGATGTATCTAAGTGAATTTATAATAAACACA]

[+] EMBL AK111808             [GTAGCTCATGCATATTAAAAGGGCTAAACACCAACCAAACCCTTTGCTCCTCCATGACAACAATGTCATGTTGCTAGCAGCTAGATCAAGAATATATTCAAGATAGTTAATTGCTGCATATAGGTTTTGCAAGTTGCAGAACTTGCAGCTATATTGTTGTTACACTAGCTGTTCATATCTTGGATTCCAGTGATATCTAGAGTGCATGCATGGGGCATCACTCTTGCTGCAACCAGCAGAAGGTGAAGAGGGGCCTCTGGTCTCCTGAGGAAGATGAGAAGCTCATCAGATACATCACCACCCATGGCTATGGCTGCTGGAGCGAGGTCCCGGAGAAAGCCGGTTTGCAGCGATGTGGGAAGAGCTGCCGGCTCCGGTGGATCAACTACCTGAGACCGGACATCCGGCGAGGGCGGTTCACGGCGGAGGAGGAGAAGCTCATCATCAGCCTGCACGCCATTGTTGGCAACAGGTGGGCCCACATTGCCAGCCACCTGCCTGGCCGGACCGACAACGAGATCAAGAACTACTGGAATTCATGGATCAAGAAGAAGATTCGCAAGCCGGCGGCGGCCGCCGCCGCGGCGACCACGACGAGCCCGAACAACCCGCCGCCGTGCAGCACGGCGACGTCGGACCACCACCACCTGCCGCCGCCGGCGTTCGGCGGCGCTGATCACCACCTGCAGCTCGACGCCATCATCAACCAGAACCTGATATCATCCCTGCCGCCGAAGCTCGCCACCGGCGACGACTCGCCGCCGGCGGTGCCCGGGCTGCCGCACCACTGCCCGCTCTTCATGTTCGACACCACCACCACCGGCGCCGGCGGCGCCATCAGCCCGCCGCCGCCGTCATCACTGATCCCAACCCACCTCCACCACCACCACCACCCGTTCATCGCCAGCTTCACGGCGGCGATGGCCGCCGACACGCCGAGCTACCTGCCCCCGCTGGTCGACGGCATGGCAGCCATGGGAGCGGCCATGGATTGCAGCTTAGAAGATGGCCAAACAGCCGCCGCCATGGCCGCCACCAATGGCTACTACCAGCATCATCAGAAGCATCAGCAGCTGGAGATTGAGCTGGAGGAGGAGGAGCAGAGGCAGCTAGGGCATCATCATCATCAGCATCACCATGAGCATGAGCATGAAAATCATCAGTGGGATGAAGAAGAAGCACAGCATCTGCTGATGTGGGATCAAGAAGTACTAACATCATCCAACTTGGAGGCCATGCAAAGTGGTGCTCATTCCCTCCTTTTTATGGGACCAAATGACCATGATTAAGTTGGTAATAATAACCTATGTCTACCCCCCCCCCAATTTTTTTTCTTTTTGGGAAAAAAAAACTTGCATGTGCATATTTTGCATCTCACAACATCTGATCCCATCTCTGATCTGATCTTGATCTCCCTTTGATCAATCTAGCTCTCACTACTACCCCATCTGATCTGTCTATACATGAAATAATGAGGTTTTGCAAATTAAAGGCGCGCGTAATTTATTGTGTTTTGGATTTTTTTTCTATCTCTCTCCAAGAGCTTTTATTTTGGTTTTTTTACTTTTTTTTTTGGATTGGAGTGTGAAGACTGAATAGTGTGTGTCAATTGGGTTTTTTGTAAAGAGACCACCTTGTATGAGTGCATGGCATGGCACTTTGGAGTGTGTAATTTGATTGATGTATCTAAGTGAATTTATAATAAACACA]
[+] EMBL AK112117             [                                                           ACAATGTCATGTTGCTAGCAGCTAGATCAAGAATATATTCAAGATAGTTAATTGCTGCATATAGGTTTTGCAAGTTGCAGAACTTGCAGCTATATTGTTGTTACACTAGCTGTTCATATCTTGGATTCCAGTGATATCTAGAGTGCATGCATGGGGCATCACTCTTGCTGCAACCAGCAGAAGGTGAAGAGGGGCCTCTGGTCTCCTGAGGAAGATGAGAAGCTCATCAGATACATCACCACCCATGGCTATGGCTGCTGGAGCGAGGTCCCGGAGAAAGCCGGTTTGCAGCGATGTGGGAAGAGCTGCCGGCTCCGGTGGATCAACTACCTGAGACCGGACATCCGGCGAGGGCGGTTCACGGCGGAGGAGGAGAAGCTCATCATCAGCCTGCACGCCATTGTTGGCAACAGGTGGGCCCACATTGCCAGCCACCTGCCTGGCCGGACCGACAACGAGATCAAGAACTACTGGAATTCATGGATCAAGAAGAAGATTCGCAAGCCGGCGGCGGCCGCCGCCGCGGCGACCACGACGAGCCCGAACAACCCGCCGCCGTGCAGCACGGCGACGTCGGACCACCACCACCTGCCGCCGCCGACGTTCGGCGGCGCTGATCACCACCTGCAGCTCGACGCCATCATCAACCAGAACCTGATATCATCCCTGCCGCCGAAGCTCGCCACCGGCGACGACTCGCCGCCGGCGGTGCCCGGGCTGCCGCACCACTGCCCGCTCTTCATGTTCGACACCACCACCACCGGCGCCGGCGGCGCCATCAGCCCGCCGCCGCCGTCATCACTGATCCCAACCCACCTCCACCACCACCACCACCCGTTCATCGCCAGCTTCACGGCGGCGATGGCCGCCGACACGCCGAGCTACCTGCCCCCGCTGGTCGACGGCATGGCAGCCATGGGAGCGGCCATGGATTGCAGCTTAGAAGATGGCCAAACAGCCGCCGCCATGGCCGCCACCAATGGCTACTACCAGCATCATCAGAAGCATCAGCAGCTGGAGATTGAGCTGGAGGAGGAGGAGCAGAGGCAGCTAGGGCATCATCATCATCAGCATCACCATGAGCATGAGCATGAAAATCATCAGTGGGATGAAGAAGAAGCACAGCATCTGCTGATGTGGGATCAAGAAGTACTAACATCATCCAACTTGGAGGCCATGCAAAGTGGTGCTCATTCCCTCCTTTTTATGGGACCAAATGACCATGATTAAGTTGGTAATAATAACCTATGTCTACCCCCCCCCCAATTTTTTTTCTTTTTGGG AAAAAAAACTTGCATGTGCATATTTTGCATCTCACAACATCTGATCCCATCTCTGATCTGATCTTGATCTCCCTTTGATCAATCTAGCTCTCACTACTACCCCATCTGATCTGTCTATACATGAAATAATGAGGTTTTGCAAATTAAAGGCGCGCGTAATTTATTGTGTTTTGGATTTTTTTTCTATCTCTCTCCAAGAGCTTTTATTTTGGTTTTTTTACTTTTTTTTTTGGATTGGAGTGTGAAGACTGAATAGTGTGTGTCAATTGGGTTTTTTGTAAAGAGACCACCTTGTATGAGTGCATGGCATGGCACTTTGGAGTGTGTAATTTGATTGATGTATCTAAGTGAATTTATAATAAACACA]


>consensus_1433#0 GTAGCTCATGCATATTAAAAGGGCTAAACACCAACCAAACCCTTTGCTCCTCCATGACAA CAATGTCATGTTGCTAGCAGCTAGATCAAGAATATATTCAAGATAGTTAATTGCTGCATA TAGGTTTTGCAAGTTGCAGAACTTGCAGCTATATTGTTGTTACACTAGCTGTTCATATCT TGGATTCCAGTGATATCTAGAGTGCATGCATGGGGCATCACTCTTGCTGCAACCAGCAGA AGGTGAAGAGGGGCCTCTGGTCTCCTGAGGAAGATGAGAAGCTCATCAGATACATCACCA CCCATGGCTATGGCTGCTGGAGCGAGGTCCCGGAGAAAGCCGGTTTGCAGCGATGTGGGA AGAGCTGCCGGCTCCGGTGGATCAACTACCTGAGACCGGACATCCGGCGAGGGCGGTTCA CGGCGGAGGAGGAGAAGCTCATCATCAGCCTGCACGCCATTGTTGGCAACAGGTGGGCCC ACATTGCCAGCCACCTGCCTGGCCGGACCGACAACGAGATCAAGAACTACTGGAATTCAT GGATCAAGAAGAAGATTCGCAAGCCGGCGGCGGCCGCCGCCGCGGCGACCACGACGAGCC CGAACAACCCGCCGCCGTGCAGCACGGCGACGTCGGACCACCACCACCTGCCGCCGCCGG CGTTCGGCGGCGCTGATCACCACCTGCAGCTCGACGCCATCATCAACCAGAACCTGATAT CATCCCTGCCGCCGAAGCTCGCCACCGGCGACGACTCGCCGCCGGCGGTGCCCGGGCTGC CGCACCACTGCCCGCTCTTCATGTTCGACACCACCACCACCGGCGCCGGCGGCGCCATCA GCCCGCCGCCGCCGTCATCACTGATCCCAACCCACCTCCACCACCACCACCACCCGTTCA TCGCCAGCTTCACGGCGGCGATGGCCGCCGACACGCCGAGCTACCTGCCCCCGCTGGTCG ACGGCATGGCAGCCATGGGAGCGGCCATGGATTGCAGCTTAGAAGATGGCCAAACAGCCG CCGCCATGGCCGCCACCAATGGCTACTACCAGCATCATCAGAAGCATCAGCAGCTGGAGA TTGAGCTGGAGGAGGAGGAGCAGAGGCAGCTAGGGCATCATCATCATCAGCATCACCATG AGCATGAGCATGAAAATCATCAGTGGGATGAAGAAGAAGCACAGCATCTGCTGATGTGGG ATCAAGAAGTACTAACATCATCCAACTTGGAGGCCATGCAAAGTGGTGCTCATTCCCTCC TTTTTATGGGACCAAATGACCATGATTAAGTTGGTAATAATAACCTATGTCTACCCCCCC CCCAATTTTTTTTCTTTTTGGGAAAAAAAAACTTGCATGTGCATATTTTGCATCTCACAA CATCTGATCCCATCTCTGATCTGATCTTGATCTCCCTTTGATCAATCTAGCTCTCACTAC TACCCCATCTGATCTGTCTATACATGAAATAATGAGGTTTTGCAAATTAAAGGCGCGCGT AATTTATTGTGTTTTGGATTTTTTTTCTATCTCTCTCCAAGAGCTTTTATTTTGGTTTTT TTACTTTTTTTTTTGGATTGGAGTGTGAAGACTGAATAGTGTGTGTCAATTGGGTTTTTT GTAAAGAGACCACCTTGTATGAGTGCATGGCATGGCACTTTGGAGTGTGTAATTTGATTG ATGTATCTAAGTGAATTTATAATAAACACA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)