These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14340#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1745 fasta sequence [ATTGGTAAGGTTGTTCAAATCAATCAAGTCTAGTGTAGTAGCTAATTAAGCCGCCGCCGCGAGTCGACCTCGCAACCATCCATGGCCCCGCGCCTCCTCCTCGCCCTCGCCCTCGTCCTGCTCGCCTCCGGCGCAAGCGCGGCGAGCGTGGGGGACACGTGCTCGTCGGAGGGAGACTGCGGCGCGGGGCTGCACTGCAGCGACTGCGGCGGCGGCGGCGGCGGCGACAAGACGTGCACGCGCGCCAAGCCCATCGACCCGCTCACGCACGGCACGGATCTCCCCTTCAACAACTACTCATGGCTGACGACGCACAACTCGTACGCCCTCGCCGGCTCCTCCTCCGCCACCGGCTCCGCCCTCATCACCCAAACCAACCAGGAGGACACCATCACCGCCCAGCTCAAGAATGGTGTTAGGGGCTTGATGCTTGACACTTACGACTTCAATAATGATGTCTGGCTGTGCCACTCATTTCAAGGGAAATGCTTTAACTTCACAGCCTTTCAACCTGCCATCAATGTGTTGAAAGAAATCCGGACGTTCCTTGACGGTAACCCTTCAGAAGTAATCACAATTTTCTTGGAAGATTATACTGCTTCTGGGTCTCTGCCAAAAGTATTCAATGCTTCTGGACTCATGAAGTATTGGTTCCCAGTGGCTAAAATGCCCAAGAGCGGTGGCGACTGGCCTCTACTCAAGGACATGATCAGCCAGAACGAGCGCCTGCTAGTCTTCACATCAAAGAAATCAAAAGAAGCAAGCGAGGGGATCGCTTACGAGTGGAGTTACGTCGTGGAAAACCAATATGGAAATGAAGGGATGGTAGAGGGTAAATGCCCGAATCGTGCAGAGTCTCCAGCCATGGATTCCAAAAGCCAGTCTCTTGTCCTGATGAACTTCTTCACAACAGACCCAAGTCAAACAGGGGTTTGCGCAAACAACTCAGCGCCACTTGTTAGCATGCTGAAAACCTGCCATGATCTCTCGGGCAATCGGTGGCCCAATTACATCGCTGTTGATTTCTACATGAGGAGCGATGGTGGAGGAGCTCCCTTAGCTACTGACATCGCAAATGGTCATCTAGTATGTGGGTGTGACAACATCGCATAC-TGCAAGGCGAATTCGACATTCGGGACATGTGTGATACC-TCCACCTTCACCGCCGCCGTCGCCTCGGAAGGCACCCAGCGGCGGCAA-GGGCACAAGTGCAGGCGGCAGCTCCAGTTCCAGCGGCGCAATGGCTCGGGTTGTACT-ACCAAAGC-TGAGCTTCTTCTTCGGAGT-GGCACTTCTGATCCTGGTCATACTCTCTTATTAAGAGCAGACCCATTCACTTGAGCTTGTGCTGTCTTTGTGCTCTGCTGGTA-CAAGCACATACTGTACTG-CCATTCTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGTAACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGTTCATGTGCCGAGCTGTAGATCATTCCTTTTATTTGAGGCAATATTTTTCTGCATATCAAGTGATCTTATTGCTCATAAAATAACTGCAATCGCATTGTAAAAAAATGTTGTGGTAAGACCTTTTACAGGTGCAAAATATGCCTATTATGCATAGCCAGCAAATGGAACAGATTCTGCATATGTCATCAGGATTATTCTTGATCTTATGCACTTTATGTTCCAAGAAAAANAAAAAAAAAAAAAAA] [+] EMBL AK067883 [ATTGGTAAGGTTGTTCAAATCAATCAAGTCTAGTGTAGTAGCTAATTAAGCCGCCGCCGCGAGTCGACCTCGCAACCATCCATGGCCCCGCGCCTCCTCCTCGCCCTCGCCCTCGTCCTGCTCGCCTCCGGCGCAAGCGCGGCGAGCGTGGGGGACACGTGCTCGTCGGAGGGAGACTGCGGCGCGGGGCTGCACTGCAGCGACTGCGGCGGCGGCGGCGGCGGCGACAAGACGTGCACGCGCGCCAAGCCCATCGACCCGCTCACGCACGGCACGGATCTCCCCTTCAACAACTACTCATGGCTGACGACGCACAACTCGTACGCCCTCGCCGGCTCCTCCTCCGCCACCGGCTCCGCCCTCATCACCCAAACCAACCAGGAGGACACCATCACCGCCCAGCTCAAGAATGGTGTTAGGGGCTTGATGCTTGACACTTACGACTTCAATAATGATGTCTGGCTGTGCCACTCATTTCAAGGGAAATGCTTTAACTTCACAGCCTTTCAACCTGCCATCAATGTGTTGAAAGAAATCCGGACGTTCCTTGACGGTAACCCTTCAGAAGTAATCACAATTTTCTTGGAAGATTATACTGCTTCTGGGTCTCTGCCAAAAGTATTCAATGCTTCTGGACTCATGAAGTATTGGTTCCCAGTGGCTAAAATGCCCAAGAGCGGTGGCGACTGGCCTCTACTCAAGGACATGATCAGCCAGAACGAGCGCCTGCTAGTCTTCACATCAAAGAAATCAAAAGAAGCAAGCGAGGGGATCGCTTACGAGTGGAGTTACGTCGTGGAAAACCAATATGGAAATGAAGGGATGGTAGAGGGTAAATGCCCGAATCGTGCAGAGTCTCCAGCCATGGATTCCAAAAGCCAGTCTCTTGTCCTGATGAACTTCTTCACAACAGACCCAAGTCAAACAGGGGTTTGCGCAAACAACTCAGCGCCACTTGTTAGCATGCTGAAAACCTGCCATGATCTCTCGGGCAATCGGTGGCCCAATTACATCGCTGTTGATTTCTACATGAGGAGCGATGGTGGAGGAGCTCCCTTAGCTACTGACATCGCAAATGGTCATCTAGTATGTGGGTGTGACAACATCGCATAC TGCAAGGCGAATTCGACATTCGGGACATGTGTGATACC TCCACCTTCACCGCCGCCGTCGCCTCGGAAGGCACCCAGCGGCGGCAA GGGCACAAGTGCAGGCGGCAGCTCCAGTTCCAGCGGCGCAATGGCTCGGGTTGTACT ACCAAAGC TGAGCTTCTTCTTCGGAGT GGCACTTCTGATCCTGGTCATACTCTCTTATTAAGAGCAGACCCATTCACTTGAGCTTGTGCTGTCTTTGTGCTCTGCTGGTA CAAGCACATACTGTACTG CCATTCTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGTAACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGTTCATGTGCCGAGCTGTAGATCATTCCTTTTATTTGAGGCAATATTTTTCTGCATATCAAGTGATCTTATTGCTCATAAAATAACTGCAATCGCATTGTAAAAAAATGTTGTGGTAAGACCTTTTACAGGTGCAAAATATG ] [+] EMBL AU086047 [ ATCAATCAAGTCTAGTGTAGTAGCTAATTAAGCCGCCGCCGCGAGTCGACCTCGCAACCATCCATGGCCCCGCGCCTCCTCCTCGCCCTCGCCCTCGTCCTGCTCGCCTCCGG GCAAGCGNGGCGAGCGTGGGGGACACGTGCTCGTCGGAGGGAGACTGCGGCGCGGGGCTGCACTGCAGCGACTGCGGCGGCGGCGGCGGCGGCGACAAGACGTGCACNCGCGNCAAGCCCATCGACCCGCTCACGCACGGCACGGATCTCCCCTTCAACAACTACTCATGGCTGACGACGCACAACTCGTACGCCCTCGCC ] [+] EMBL OSS3387A [ ATCAATCAAGTCTAGTGTAGTAGCTAATTAAGCCGACGCCGCGAGTCGACCTCGCAACCATCCATGGCCCCGCGCCTCCTCCTCGCCCTCGNCCTCGTCCTGCTCGCCTCCGG GCAAGCGNGGNGAGCGTGGGGGACACGTGCTCGTCGGAGGGAGACTGCGGCGCGGGGCTGCACTGCAGNGACTGCGGCGGCGGCGGCGGCGGCGACAAGACGTGCACGAGAGCCAAGGCCATCGA ] [+] EMBL CB643239 [ AGTCTAGTGTAGTAGCTAATTAAGCCGCCGCCGCGAGTCGACCTCGCAACCATCCATGGCCCCGCGCCTCCTCCTCGCCCTCGCCCTCGTCCTGCTCGCCTCCGGCGCAAGCGCGGCGAGCGTGGGGGACACGTGCTCGTCGGAGGGAGACTGCGGCGCGGGGCTGCACTGCAGCGACTGCGGCGGCGGCGGCGGCGGCGACAAGACGTGCACGCGCGCCAAGCCCATCGACCCGCTCACGCACGGCACGGATCTCCCCTTCAACAACTACTCATGGCTGACGACGCACAACTCGTACGCCCTCGCCGGCTCCTCCTCCGCCACCGGCTCCGCCCTCATCACCCAAACCAACCAGGAGGACACCATCACCGCCCAGCTCAAGAATGGTGTTAGGGGCTTGATGCTTGACACTTACGACTTCAATAATGATGTCTGGCTGTGCCACTCATTTCAAGGGAAATGCTTTAACTTCACAGCCTTTCAACCTGCCATCAATGTGTTGAAAGAAATCCGGACGTTCCTTGACGGTAACCCTTCAGAAGTAATCACAATTTTCTTGGAAGATTATACTGCTTCTGGGTCTCTGCCAAAAGTATTCAATGCTTCTGGACTCATGAAGTATTGGTTCCCAGTGGCTAAAATGCCCAAGAGCGGTGGCGACTGGCCTCTACTCAAGGACATGATCAGCCAGAACGAGCGCCTGCTAGTCTTCACATCAAAGAAATCAAAAGAAGCAAGCGAGGGGATCGCTTACGAGTGGAGTTACGTCGTGGAAAACCAATATGGAAATGAAGGGATGGTA ] [+] EMBL AK060348 [ TGGCCCCGCGCCTCCTCCTCGCCCTCGCCCTCGTCCTGCTCGCCTCCGGCGCAAGCGCGGCGAGCGTGGGGGACACGTGCTCGTCGGAGGGAGACTGCGGCGCGGGGCTGCACTGCAGCGACTGCGGCGGCGGCGGCGGCGGCGACAAGACGTGCACGCGCGCCAAGCCCATCGACCCGCTCACGCACGGCACGGATCTCCCCTTCAACAACTACTCATGGCTGACGACGCACAACTCGTACGCCCTCGCCGGCTCCTCCTCCGCCACCGGCTCCGCCCTCATCACCCAAACCAACCAGGAGGACACCATCACCGCCCAGCTCAAGAATGGTGTTAGGGGCTTGATGCTTGACACTTACGACTTCAATAATGATGTCTGGCTGTGCCACTCATTTCAAGGGAAATGCTTTAACTTCACAGCCTTTCAACCTGCCATCAATGTGTTGAAAGAAATCCGGACGTTCCTTGACGGTAACCCTTCAGAAGTAATCACAATTTTCTTGGAAGATTATACTGCTTCTGGGTCTCTGCCAAAAGTATTCAATGCTTCTGGACTCATGAAGTATTGGTTCCCAGTGGCTAAAATGCCCAAGAGCGGTGGCGACTGGCCTCTACTCAAGGACATGATCAGCCAGAACGAGCGCCTGCTAGTCTTCACATCAAAGAAATCAAAAGAAGCAAGCGAGGGGATCGCTTACGAGTGGAGTTACGTCGTGGAAAACCAATATGGAAATGAAGGGATGGTAGAGGGTAAATGCCCGAATCGTGCAGAGTCTCCAGCCATGGATTCCAAAAGCCAGTCTCTTGTCCTGATGAACTTCTTCACAACAGACCCAAGTCAAACAGGGGTTTGCGCAAACAACTCAGCGCCACTTGTTAGCATGCTGAAAACCTGCCATGATCTCTCGGGCAATCGGTGGCCCAATTACATCGCTGTTGATTTCTACATGAGGAGCGATGGTGGAGGAGCTCCCTTAGCTACTGACATCGCAAATGGTCATCTAGTATGTGGGTGTGACAACATCGCATAC TGCAAGGCGAATTCGACATTCGGGACATGTGTGATACC TCCACCTTCACCGCCGCCGTCGCCTCGGAAGGCACCCAGCGGCGGCAA GGGCACAAGTGCAGGCGGCAGCTCCAGTTCCAGCGGCGCAATGGCTCGGGTTGTACT ACCAAAGC TGAGCTTCTTCTTCGGAGT GGCACTTCTGATCCTGGTCATACTCTCTTATTAAGAGCAGACCCATTCACTTGAGCTTGTGCTGTCTTTGTGCTCTGCTGGTA CAAGCACATACTGTACTG CCATTCTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGTAACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGTTCATGTGCCGAGCTGTAGATCATTCCTTTTATTTGAGGCAATATTTTTCTGCATATCAAGTGATCTTATTGCTCATAAAATAACTGCAATCGCATTGTAAAAAAATGTTGTGGTAAGACCTT ] [+] EMBL OSR18811A [ TTGATGCTTGACACTTACGACTTCAATAATGATGTCTGGCTGTGCCACTCATTTCAAGGGAAATGCTTTAACTTCACAGCCTTTCAACCTGCCATCAATGTGTTGAAAGAAATCCGGACGTTCCTTGACGGTAACCCTTCAGAAGTAATCACAATTTTCTTGGAAGATTATACTGCTTCTGGGTCTCTGCCAAAAGTATTCAATGCTTCTGGACTCATGAAGTATTGGTTCCCAGTGGCTAAAATGCCCAAGAGCGGTGGCGACTGGCCTCTACTCAAGGACATGATCAGCCAGAACGAGCGCCTNCTAGTCTTCACATCAAAGAAATCAAAAGAAGCAAGCNAGGGGATCGCTTACGAGTGGAGT ] [-] EMBL CB643240 [ AAAAGAAGCAAGCGAGGGGATCGCTTACGAGTGGAGTTACGTCGTGGAAAACCAATATGGAAATGAAGGGATGGTAGAGGGTAAATGCCCGAATCGTGCAGAGTCTCCAGCCATGGATTCCAAAAGCCAGTCTCTTGTCCTGATGAACTTCTTCACAACAGACCCAAGTCAAACAGGGGTTTGCGCAAACAACTCAGCGCCACTTGTTAGCATGCTGAAAACCTGCCATGATCTCTCGGGCAATCGGTGGCCCAATTACATCGCTGTTGATTTCTACATGAGGAGCGATGGTGGAGGAGCTCCCTTAGCTACTGACATCGCAAATGGTCATCTAGTATGTGGGTGTGACAACATCGCATAC TGCAAGGCGAATTCGACATTCGGGACATGTGTGATACC TCCACCTTCACCGCCGCCGTCGCCTCGGAAGGCACCCAGCGGCGGCAA GGGCACAAGTGCAGGCGGCAGCTCCAGTTCCAGCGGCGCAATGGCTCGGGTTGTACT ACCAAAGC TGAGCTTCTTTTTCGGAGT GGCACTTCTGATCCTGGTCATACTCTCTTATTAAGAGCAGACCCATTCACTTGAGCTTGTGCTGTCTTTGTGCTCTGCTGGTA CAAGCACATACTGTACTG CCATTCTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGTAACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGTTCATGTGCCGAGCTGTAGATCATTCCTTTTATTTGAGGCAATATTTTTCTGCA ] [+] EMBL AU058308 [ AAGTCAAACAGGGGTTTGCGCAAACAACTCAGCGCCACTTGTTAGCATGCTGAAAACCTGCCATGATCTCTCGGGCAATCGGTGGCCCAATTACATCGCTGTTGATTTCTACATGAGGAGCGATGGTGGAGGAGCTCCCTTAGCTGCTGACATCGCAAATGGTCATCTAGTATGTGGGTGTGACAACATCGCATACNNGCAAGGCGAATTCGACATTCGGGACATGTGTGATACCTTCCACCTTCACCGGCNGCGTCGCCTCGGAANGCA CCAGCGGCGGCAA GGGCACAANTGCA GCGGGAG ] [+] EMBL AU065619 [ AAGTCAAACAGGGGTTTGCGCAAACAACTCAGCGCCACTTGTTAGCATGCTGAAAACCTGCCATGATCTCTCGGGCAATCGGTGGCCCAATTACATCGCTGTTGATTTCTACATGAGGAGCGATGGTGGAGGAGCTCCCTTAGCTGCTGACATCGCAAATGGTCATCTAGTATGTGGGTGTGACAACATCGCATAC TGCAAGGCGAATTCGACATTCGGGACATGTGTGATACC TCCACCTTCACCGCCGCCGTCGCCTCGGAAGGCACCCAGCGGCGGCAANGGGCACAAGTGCAGGCGGCACTTCCAGTTCCAGCGGCGCATGGGCTCGGGTTGTACTAACCAAAGCTTGAGCTTCTTCTTCGGAGTGGGNACTTCTGATCCTGGGTAAAATCCCTTA ] [+] EMBL AU184297 [ CATTCGGGACATGTGTGATACC TCCACCTTCACCGCCGCCGTCGCCTCGGAAGGCACCCAGCGGCGGCAA GGGCACAAGTGCAGGCGGCAGCTCCAGTTCCAGCGGCGCAATGGCTCGGGTTGTACT ACCAAAGC TGAGCTTCTTCTTCGGAGT GGCACTTCTGATCCTGGTCATACTCTCTTATTAAGAGCAGACCCATTCACTTGAGCTTGTGCTGTCTTTGTGCTCTGCTGGTA CAAGCACATACTGTACTG CCATTNTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGTAACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGTTCATGTGCCGAGCTGTAGATCATTCCTTTTATTTGAGGCAATATTTTTCTGCAaaaaaa ] [+] EMBL AU086048 [ cnTCTTC CGGAGT GGCACTTCTGATCCTGGTCATACTCTCTTATNACGAGCAGACCCATTCACTTGAGCTTGNGCTGCCTTTGTGCNCTGCTGGTANCAAGCACATACTGTACTGCCCATTCTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGTAACTNCTTTTTCTTTTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGTTCATGTGCCGAGCTGTAGATCATTCCTTTTATTTGAGGCAATATTTTTCTGCATATCAAGTGATCTTATTGCTCATAAAATAACTGCAATCGCATTGTAAAAAAATGTTGTGGTAAGACCTTTTACAGGTGCAAAATATGCCTATTATGCATAGCCAGCAAATGGAACAGATTCTGCATATGTCATCAGGATTATTCTTGATCTTATGCACTTTATGTTCCAAGAAAAANAAAAAAAAAAAAAA ] [+] EMBL AU097284 [ TAGATGCCAGATTAGCTGGAGAAATTGTTCATGTGCCGAGCTGTAGATCATTCCTTTTATTTGAGGCAATATTTTTCTGCATATCAAGTGATCTTATTGCTCATAAAATAACTGCAATCGCATTGTAAAAAAATGTTGTGGTAAGACCTTTTACAGGTGCAAAATATGCCTATTATGCATAGACAGCAAATGGAACAGATTCTGCATATGTCATCAGGATTATTCTTGATCTTATGCACTTTATGTTCCAAGAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14340#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 654 fasta sequence [AGCCACGAGACAAGGGGTTTGCGCAAACAACTCAGCGCCACTTGTTAGCATGCTGAAAACCTGCCATGATCTCTCGGGCAATCGGTGGCCCAATTACATCGCTGTTGATTTCTACATGAGGAGCGATGGTGGAGGAGCTCCCTTAGCTACTGACATCGCAAATGGTCATCTAGTATGTGGGTGTGACAACATCGCATACTGCAAGGCGAATTCGACATTCGGGACATGTGTGATACCTCCACCTTTACCGCCGCCGTCGCCTCGGAAGGCACCCAGCGGCGGCAAGGGCACAAGTGCAGGCGGCAGCTCCAGTTCCAGCGGCGCAATGGCTCGGGTTGTACTACCAAAGCTGAGCTT-TT-TT-GGAGTGGCACTTCTGATCCTGGTCATACTCTCTTATTAAGAGCAGACCCATTCACTTGAGCTTGTGCTGTCTTTGTGCTCTGCTGGTACAAGCACATACTGTACTGCCATTTTGAGGCAAAATTTTTTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTTTAACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGTCCATGTGCCGAGCTGTAGATCATTCCTTTTATTTGAGGCAATATTTTTTTGCATATCAAAAAAAAAAAAAA] [-] EMBL CA760369 [AGCCACGAGACAAGGGGTTTGCGCAAACAACTCAGCGCCACTTGTTAGCATGCTGAAAACCTGCCATGATCTCTCGGGCAATCGGTGGCCCAATTACATCGCTGTTGATTTCTACATGAGGAGCGATGGTGGAGGAGCTCCCTTAGCTACTGACATCGCAAATGGTCATCTAGTATGTGGGTGTGACAACATCGCATACTGCAAGGCGAATTCGACATTCGGGACATGTGTGATACCTCCACCTTTACCGCCGCCGTCGCCTCGGAAGGCACCCAGCGGCGGCAAGGGCACAAGTGCAGGCGGCAGCTCCAGTTCCAGCGGCGCAATGGCTCGGGTTGTACTACCAAAGCTGAGCTT TT TT GGAGTGGCACTTCTGATCCTGGTCATACTCTCTTATTAAGAGCAGACCCATTCACTTGAGCTTGTGCTGTCTTTGTGCTCTGCTGGTACAAGCACATACTGTACTGCCATTTTGAGGCAAAATTTTTTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTTTAACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGTCCATGTGCCGAGCTGTAGATCATTCCTTTTATTTGAGGCAATATTTTTTTGCATATCAAAAAAAAAAAAAA] [+] EMBL AU030090 [ AGGAGCTCCCTTAGCTGCTGACATCGCAAATGGTCATCTNGTATGTGGGTGTNACAACATCGCATACTGCAAGGCGAATTCGACATTCGGGACATGTGTGATACCTCCACCTTCACCGCCGCCGTCGCCTCGGAAGGCACCCAGCGGCGGCAAGGGCACAAGTGCAGGCGGCAGCTCCAGTTCCAGCGGCGCAATGGCTCGGGTTGTACTACCAAAGCTGAGCTTCTTCTTCGGNGTGGCACTTCTGATCCTGGTCATACTCTCTTATTAAGAGCAGACCCATTCACTTGAGCTTGTGCTGTCTTTGTGCTCTGCTGGTACAAGCACATACTGTACTGCCATTCTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGTAACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGTTCATGTGCCGAGCTGTNGATNATTCCTTTTATTTGAGGNNATNNTTTTCTGCAAA AAAAAAAAAAA ] consensusID : consensus_14340#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [CAAGTGCAGGCGGCAGCTCCAGTTCCAGCGGCCCTATGGCTCGGGTTGTACTACCAAAGCTGAGCTTCTTCTTCGGAGTGGCACTTCTGATCCTGGTCATACTCTCTTATTAAGAGCAGACCCATTCACTTGAGCTTGTGCTGTCTTTGTGCTCTGCTGGTACAAGCACATACTGTACTGCCATTCTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGTAACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGTTCATGTGCCGAGCTGTAGATCATTCCTTTTATTTGAGGCAATATTTTTCTGCATATCAAGTGATCTTATTGCTCATAAAATAACTGCAATCGCATTGTAAAAAAATGTTGTGGTAAGACCTTTTACAGGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CB000305 [CAAGTGCAGGCGGCAGCTCCAGTTCCAGCGGCCCTATGGCTCGGGTTGTACTACCAAAGCTGAGCTTCTTCTTCGGAGTGGCACTTCTGATCCTGGTCATACTCTCTTATTAAGAGCAGACCCATTCACTTGAGCTTGTGCTGTCTTTGTGCTCTGCTGGTACAAGCACATACTGTACTGCCATTCTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGTAACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGTTCATGTGCCGAGCTGTAGATCATTCCTTTTATTTGAGGCAATATTTTTCTGCATATCAAGTGATCTTATTGCTCATAAAATAACTGCAATCGCATTGTAAAAAAATGTTGTGGTAAGACCTTTTACAGGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14340#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 186 fasta sequence [ACTGCCATTCTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGTAACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTNGATGCCNGATTAGCTGGNGAAATTGTTCATGTGCCGAGCTGTNGATCATTCCTTTTATTTGAGGNNATATTTTTCTGCAAAAAAAAAAAAAA] [+] EMBL AU166176 [ACTGCCATTCTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGTAACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTNGATGCCNGATTAGCTGGNGAAATTGTTCATGTGCCGAGCTGTNGATCATTCCTTTTATTTGAGGNNATATTTTTCTGCAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14340#2 ------------------------------------------------------------ consensus_14340#3 ------------------------------------------------------------ consensus_14340#0 ATTGGTAAGGTTGTTCAAATCAATCAAGTCTAGTGTAGTAGCTAATTAAGCCGCCGCCGC 60 consensus_14340#1 ------------------------------------------------------------ consensus_14340#2 ------------------------------------------------------------ consensus_14340#3 ------------------------------------------------------------ consensus_14340#0 GAGTCGACCTCGCAACCATCCATGGCCCCGCGCCTCCTCCTCGCCCTCGCCCTCGTCCTG 120 consensus_14340#1 ------------------------------------------------------------ consensus_14340#2 ------------------------------------------------------------ consensus_14340#3 ------------------------------------------------------------ consensus_14340#0 CTCGCCTCCGGCGCAAGCGCGGCGAGCGTGGGGGACACGTGCTCGTCGGAGGGAGACTGC 180 consensus_14340#1 ------------------------------------------------------------ consensus_14340#2 ------------------------------------------------------------ consensus_14340#3 ------------------------------------------------------------ consensus_14340#0 GGCGCGGGGCTGCACTGCAGCGACTGCGGCGGCGGCGGCGGCGGCGACAAGACGTGCACG 240 consensus_14340#1 ------------------------------------------------------------ consensus_14340#2 ------------------------------------------------------------ consensus_14340#3 ------------------------------------------------------------ consensus_14340#0 CGCGCCAAGCCCATCGACCCGCTCACGCACGGCACGGATCTCCCCTTCAACAACTACTCA 300 consensus_14340#1 ------------------------------------------------------------ consensus_14340#2 ------------------------------------------------------------ consensus_14340#3 ------------------------------------------------------------ consensus_14340#0 TGGCTGACGACGCACAACTCGTACGCCCTCGCCGGCTCCTCCTCCGCCACCGGCTCCGCC 360 consensus_14340#1 ------------------------------------------------------------ consensus_14340#2 ------------------------------------------------------------ consensus_14340#3 ------------------------------------------------------------ consensus_14340#0 CTCATCACCCAAACCAACCAGGAGGACACCATCACCGCCCAGCTCAAGAATGGTGTTAGG 420 consensus_14340#1 ------------------------------------------------------------ consensus_14340#2 ------------------------------------------------------------ consensus_14340#3 ------------------------------------------------------------ consensus_14340#0 GGCTTGATGCTTGACACTTACGACTTCAATAATGATGTCTGGCTGTGCCACTCATTTCAA 480 consensus_14340#1 ------------------------------------------------------------ consensus_14340#2 ------------------------------------------------------------ consensus_14340#3 ------------------------------------------------------------ consensus_14340#0 GGGAAATGCTTTAACTTCACAGCCTTTCAACCTGCCATCAATGTGTTGAAAGAAATCCGG 540 consensus_14340#1 ------------------------------------------------------------ consensus_14340#2 ------------------------------------------------------------ consensus_14340#3 ------------------------------------------------------------ consensus_14340#0 ACGTTCCTTGACGGTAACCCTTCAGAAGTAATCACAATTTTCTTGGAAGATTATACTGCT 600 consensus_14340#1 ------------------------------------------------------------ consensus_14340#2 ------------------------------------------------------------ consensus_14340#3 ------------------------------------------------------------ consensus_14340#0 TCTGGGTCTCTGCCAAAAGTATTCAATGCTTCTGGACTCATGAAGTATTGGTTCCCAGTG 660 consensus_14340#1 ------------------------------------------------------------ consensus_14340#2 ------------------------------------------------------------ consensus_14340#3 ------------------------------------------------------------ consensus_14340#0 GCTAAAATGCCCAAGAGCGGTGGCGACTGGCCTCTACTCAAGGACATGATCAGCCAGAAC 720 consensus_14340#1 ------------------------------------------------------------ consensus_14340#2 ------------------------------------------------------------ consensus_14340#3 ------------------------------------------------------------ consensus_14340#0 GAGCGCCTGCTAGTCTTCACATCAAAGAAATCAAAAGAAGCAAGCGAGGGGATCGCTTAC 780 consensus_14340#1 ------------------------------------------------------------ consensus_14340#2 ------------------------------------------------------------ consensus_14340#3 ------------------------------------------------------------ consensus_14340#0 GAGTGGAGTTACGTCGTGGAAAACCAATATGGAAATGAAGGGATGGTAGAGGGTAAATGC 840 consensus_14340#1 ------------------------------------------------------------ consensus_14340#2 ------------------------------------------------------------ consensus_14340#3 ------------------------------------------------------------ consensus_14340#0 CCGAATCGTGCAGAGTCTCCAGCCATGGATTCCAAAAGCCAGTCTCTTGTCCTGATGAAC 900 consensus_14340#1 ------------------------------------------------------------ consensus_14340#2 ------------------------------------------------------------ consensus_14340#3 ------------------------------------------------------------ consensus_14340#0 TTCTTCACAACAGACCCAAGTCAAACAGGGGTTTGCGCAAACAACTCAGCGCCACTTGTT 960 consensus_14340#1 -----------AGCCACGAGACA---AGGGGTTTGCGCAAACAACTCAGCGCCACTTGTT 46 consensus_14340#2 ------------------------------------------------------------ consensus_14340#3 ------------------------------------------------------------ consensus_14340#0 AGCATGCTGAAAACCTGCCATGATCTCTCGGGCAATCGGTGGCCCAATTACATCGCTGTT 1020 consensus_14340#1 AGCATGCTGAAAACCTGCCATGATCTCTCGGGCAATCGGTGGCCCAATTACATCGCTGTT 106 consensus_14340#2 ------------------------------------------------------------ consensus_14340#3 ------------------------------------------------------------ consensus_14340#0 GATTTCTACATGAGGAGCGATGGTGGAGGAGCTCCCTTAGCTACTGACATCGCAAATGGT 1080 consensus_14340#1 GATTTCTACATGAGGAGCGATGGTGGAGGAGCTCCCTTAGCTACTGACATCGCAAATGGT 166 consensus_14340#2 ------------------------------------------------------------ consensus_14340#3 ------------------------------------------------------------ consensus_14340#0 CATCTAGTATGTGGGTGTGACAACATCGCATACTGCAAGGCGAATTCGACATTCGGGACA 1140 consensus_14340#1 CATCTAGTATGTGGGTGTGACAACATCGCATACTGCAAGGCGAATTCGACATTCGGGACA 226 consensus_14340#2 ------------------------------------------------------------ consensus_14340#3 ------------------------------------------------------------ consensus_14340#0 TGTGTGATACCTCCACCTTCACCGCCGCCGTCGCCTCGGAAGGCACCCAGCGGCGGCAAG 1200 consensus_14340#1 TGTGTGATACCTCCACCTTTACCGCCGCCGTCGCCTCGGAAGGCACCCAGCGGCGGCAAG 286 consensus_14340#2 ----CAAGTGCAGGCGGCAGCTCCAGTTCCAGCGGCCCTATGGCTCGGGTTGTACTACCA 56 consensus_14340#3 ------------------------------------------------------------ consensus_14340#0 GGCACAAGTGCAGGCGGCAGCTCCAGTTCCAGCGGCGCAATGGCTCGGGTTGTACTACCA 1260 consensus_14340#1 GGCACAAGTGCAGGCGGCAGCTCCAGTTCCAGCGGCGCAATGGCTCGGGTTGTACTACCA 346 consensus_14340#2 AAGCTGAGCTTCTTCTTCGGAGTGGCACTTCTGATCCTGGTCATACTCTCTTATTAAGAG 116 consensus_14340#3 ------------------------------------------------------------ consensus_14340#0 AAGCTGAGCTTCTTCTTCGGAGTGGCACTTCTGATCCTGGTCATACTCTCTTATTAAGAG 1320 consensus_14340#1 AAGCTGAGCTTTT---TTGGAGTGGCACTTCTGATCCTGGTCATACTCTCTTATTAAGAG 403 consensus_14340#2 CAGACCCATTCACTTGAGCTTGTGCTGTCTTTGTGCTCTGCTGGTACAAGCACATACTGT 176 consensus_14340#3 ------------------------------------------------------------ consensus_14340#0 CAGACCCATTCACTTGAGCTTGTGCTGTCTTTGTGCTCTGCTGGTACAAGCACATACTGT 1380 consensus_14340#1 CAGACCCATTCACTTGAGCTTGTGCTGTCTTTGTGCTCTGCTGGTACAAGCACATACTGT 463 consensus_14340#2 ACTGCCATTCTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGT 236 consensus_14340#3 ACTGCCATTCTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGT 60 consensus_14340#0 ACTGCCATTCTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGT 1440 consensus_14340#1 ACTGCCATTTTGAGGCAAAATTTTTTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTTT 523 ********* ************** ********************************* * consensus_14340#2 AACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGT 296 consensus_14340#3 AACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTNGATGCCNGATTAGCTGGNGAAATTGT 120 consensus_14340#0 AACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGT 1500 consensus_14340#1 AACTTCTTTTTCTTTTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGT 583 ********************************* ****** ********** ******** consensus_14340#2 TCATGTGCCGAGCTGTAGATCATTCCTTTTATTTGAGGCAATATTTTTCTGCATATCAAG 356 consensus_14340#3 TCATGTGCCGAGCTGTNGATCATTCCTTTTATTTGAGGNNATATTTTTCTGCAAAAAAAA 180 consensus_14340#0 TCATGTGCCGAGCTGTAGATCATTCCTTTTATTTGAGGCAATATTTTTCTGCATATCAAG 1560 consensus_14340#1 CCATGTGCCGAGCTGTAGATCATTCCTTTTATTTGAGGCAATATTTTTTTGCATATCAAA 643 *************** ********************* ******** **** * ** consensus_14340#2 TGATCTTATTGCTCATAAAATAACTGCAATCGCATTGTAAAAAAATGTTGTGGTAAGACC 416 consensus_14340#3 AAAAAA------------------------------------------------------ 186 consensus_14340#0 TGATCTTATTGCTCATAAAATAACTGCAATCGCATTGTAAAAAAATGTTGTGGTAAGACC 1620 consensus_14340#1 AAAAAAAAAAA------------------------------------------------- 654 * consensus_14340#2 TTTTACAGGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 476 consensus_14340#3 ------------------------------------------------------------ consensus_14340#0 TTTTACAGGTGCAAAATATGCCTATTATGCATAGCCAGCAAATGGAACAGATTCTGCATA 1680 consensus_14340#1 ------------------------------------------------------------ consensus_14340#2 AAAAAAAAAAAAAAAAAA------------------------------------------ 494 consensus_14340#3 ------------------------------------------------------------ consensus_14340#0 TGTCATCAGGATTATTCTTGATCTTATGCACTTTATGTTCCAAGAAAAANAAAAAAAAAA 1740 consensus_14340#1 ------------------------------------------------------------ consensus_14340#2 ----- consensus_14340#3 ----- consensus_14340#0 AAAAA 1745 consensus_14340#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||