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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14342#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 603 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTT---GTTTAAATGCGGGTCTATCATTCCGTCATCATCAAGAGTTAACTTATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGACATGAAAGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCTATACAATGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATCATTGCCACGAGAATTCCTCCATTGCTCCGATAGCTCCTCCCTCACTTCTTTAGCTTTGGACGATAGATTCTCAAGAGACTTGTTGGTCCTCACAGCAAATCTCTGGAAGGTA-CGGTTGTTGGCGAGCCCCTCGACGATGAACTCGTTGACGACGTAGCTGAGCACCCTCCCGAACAGGTTCCCGCCGCCGGCCATGGCGAAGAGCAGGAGGAAGCTTCCAGAGAGAAGGCGGGGGTGG-GAGGGGA--TTTTGC-TATTATTAACCGGAGCGGGCGCTTGCCCCCCTTG]
[+] EMBL CA760208 [TTTTTTTTTTTTTTTTTTTTTTAACGTTTAAATGCGGGTCTATCATTCCGTCATCATCAAGAGTTAACTTATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGACATGAAAGGGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCTATACAATGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATCATTGCCACGAGAATTCCTCCATTGCTCCAATAGCTCCTCCCTCACTTCTTTAGCTTTGGACGATAGATTCTCAAGAGACTTGTTGGTCCTCACAGCAAATCTCTGGAAGGTACCGGTTGTTGGCGAGCCCCTCGACAATAAACTCGTTGACGACNTANCTGAGCACCCTCCCAAACAGGTTCCCGCCGCCGGCCATGGCAAAAAGCAGGAGGAAGCTTCCAAAGAGAAGGC GGGGTGGAGGGGGGAATTTTTGCTTATTATTAACCGGA CGGGCGCTTGCCCCCCTTG]
[-] EMBL CA998900 [ TTTTTTTTT GTTTAAATGCGGGTCTATCATTCCGTCATCATCAAGAGTTAACTTATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGACATGAAAGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCTATACAATGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGACTGAAATGATCATCATTGCCACGAGAATTCCTCCATTGCTCCGATAGCTCCTCCCTCACTTCTTTAGCTTTGGACGATAGATTCTCAAGAGACTTGTTGGTCCTCACAGCAAATCTCTGGAAGGTA CGGTTGTTGGCGAGCCCCTCGACGATGAACTCGTTGACGACGTAGCT ]
[-] EMBL BI799936 [ TTTTTT TTTTAAATGCGGGTCTATCATTCCGTCATCATCAAGAGTTAACTTATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGACATGAAAGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCTATACAA GGTTTCTT ]
[-] EMBL AK121759 [ TGCGGGTCTATCATTCCGTCATCATCAAGAGTTAACTTATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGACATGAAAGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCTATACAATGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATCATTGCCACGAGAATTCCTCCATTGCTCCGATAGCTCCTCCCTCACTTCTTTAGCTTTGGACGATAGATTCTCAAGAGACTTGTTGGTCCTCACAGCAAATCTCTGGAAGGTA CGGTTGTTGGCGAGCCCCTCGACGATGAACTCGTTGACGACGTAGCTGAGCACCCTCCCGAACAGGTTCCCGCCGCCGGCCATGGCGAAGAGCAGGAGGAAGCTTCCAGAGAGAAGGCGGGGGTGG GAGGGGA TTTTGC TATTATTAACCGGAGCGG ]
[+] EMBL BI305888 [ TCATCATCAAGAGTTAACTTATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGACATGAAAGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCTATACAATGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATTGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATC ]
[+] EMBL BI305745 [ TCATCATCAAGAGTTAACTTATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGACATGAAAGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCTATACAATGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATC ]
[-] EMBL CF313864 [ GAGTTAACTTATGCAGGATTTCTCCATTACANAGTATACTCGGAAGATAATAGGGAAGTACGACATGAAAGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCTATACAATGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATCATTGCCACGAGAATTCCTCCATTGCTCCGATAGCTCCTCCCTCACTTCTTTAGCTTTGGACGATAGATTCTCAAGAGACTTGTTGGTCCTCACAGCAAATCTCTGGAAGGTA CGGTTGTTGGCGAGCCCCTCGACGATGAACTCGTTGACGACGTAGCTGAGCACCCTCCCGAACAGGTTCCCGCCGCCGGCCATGGCGAAGAGCAGGAGGAAGCTTCCAGAGAGAAGGCGGGGGTGG GAGGGGA TTTTGC TATTATTAACCGGAGCGG ]
consensusID : consensus_14342#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 313 fasta sequence
[TAGG-AC--ACCAACGAAC-GTTTAAATGCGGGTCTATCATTCC-GTCATCATCAAGAGTTAACTTATGCA-GGATTTCTCC--A-TTACA-AA-GTATA-C-TC--GGAAG-ATAAT-A-GGGAAGTACGACA-T-G-AAA-GTGGTCTGATTTCTACTTATCAA-GTTCACAAAAATTGAGATCACAT-GGTTTCTATACAA-GGGTTTCTTCCAT-GCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATCA]
[+] EMBL CB965517 [TAGGAACAAACCAACGAACNGTTTAAATGCGGGTCTATCATTCC GTCATCATCAAGAGTTAACTTATGCA GGATTTCTCC ANTTACACAAGGTATA C TCCNGGAAG ATAAT AGGGGAAGTACGACA T G AAA GGGGTCTGATTTCTACTTATCAA GTTCACAAAAATTGAGATCACAT GGTTTCTATACAA GGGTTTCTTCCAT GCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATC ]
[+] EMBL CB966518 [TAGG AC ACCAACGAAC GTTTAAATGCGGGTCTATCATTCC GTCATCATCAAGAGTTAACTTATGCA GGATTTCTCC A TTACA AA GTATACC TC GGAAG ATAAT A GGGAAGTACGACA T G AAA GGGGTCTGATTTCTACTTATCAA GTTCACAAAAATTGAGATCACATGGGTTTCTATACAAGGGGTTTCTTCCATGGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATGGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATC ]
[+] EMBL BI306496 [TAGG AC ACCCACGAAC GTTTAAATGCGGGTCTATCATTCC GTCATCATCAAAAGTTAACTTATGCA GGATTTCTCC A TTACA AA GTTTA C TC GGAAA ATAAT A GGGAAGTCCCACA T G AAA GGGGGCTGATTTCTACTTATCAA GTTCACAAAAATTGAAATCACAT GGTTTCTATACAA TGGTTTCTTCCAT GCCACAATTTAAAAAAATAGCAATCATAGCCCTAGGAAAGCCCATAGCAAAATTGTACAGTTAGCAACCACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATCA]
[+] EMBL CB967345 [TAGG AC ACCAACGAAC GTTTAAATGCGGGTCTATCATTCC GTCATCATCAAGAGTTAACTTATGCA GGATTTCTCC A TTACA AA GTATA C TC GGAAG ATAAT A GGGAAGTACGACA T G AAA GTGGTCTGATTTCTACTTATCAA GTTCACAAAAATGGAGATCACAT GGTTTCTATACAA GGGTTTCTTCCAT GCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATGGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATC ]
[+] EMBL BU673540 [TAGG AC ACCAACGAAC GTTTAAATGCGGGTCTATCATTCC GTCATCATCAAGAGTTAACTTATGCA GGATTTCTCC A TTACA AA GTATA C TC GGAAG ATAAT A GGGAAGTACGACA T G AAA GTGGTCTGATTTCTACTTATCAA GTTCACAAAAATTGAGATCACAT GGTTTCTATACAA GGGTTTCTTCCAT GCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATC ]
[+] EMBL CB966262 [TAGG AC ACCAACGAAC GTTTAAATGCGGGTCTATCATTCC GTCATCATCAAGAGTTAACTTATGCA GGATTTCTCC A TTACA AA GTATA C TC GGAAG ATAAT A GGGAAGTACGACA T G AAA GTGGTCTGATTTCTACTTATCAA GTTCACAAAAATTGAGATCACAT GGTTTCTATACAA GGGTTTCTTCCAT GCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGCCGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCACTGCCTGAAATGATCATC ]
[+] EMBL BU673215 [TAGG AC ACCAACGAAC GTTTAAATGCGGGTCTATCATTCC GTCATCATCAAGAGTTAACTTATGCACGGATTTCTCCCNA TTACA AA GTATA CNTC GGAAG ATAATCA GGGAAGTACGACA T GCCAA GTGGTC ]
[+] EMBL BU673320 [ G AC ACCAACGAAC GTTTAAATGCGGGTCTATCATTCCGGTCATCATCAAGAGTTAACTTATGCA GGATTTCTCC A TTACA AA GTATA C TC GGAAG ATAAT A GGGAAGTACGACA TGG AAAGGTGGTCTGATTTCTACTTATCAAGGTTCACAAAAATGGAGATCACATGGGTTTCTATACAAGGGGTTTCTTCCATGGCGACAATATta ]
[+] EMBL CB967316 [ TCTATCATTCC GTCATCATCAAGAGTTAACTTATGCA GGATTTCTCC A TTACA AA GTATA C TCN GGAAGAATAAT A GGGAAGTACGACAGT G AAA GTGGTCg ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14342#0 TTTTTTTTTTTTTTTTTTTTTTGTTTAAATGCGGGTCTATCATTCCGTCATCATCAAGAG 60
consensus_14342#1 ------TAGGACACCAACGAACGTTTAAATGCGGGTCTATCATTCCGTCATCATCAAGAG 54
* **************************************
consensus_14342#0 TTAACTTATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGA 120
consensus_14342#1 TTAACTTATGCAGGATTTCTCCATTACAAAGTATACTCGGAAGATAATAGGGAAGTACGA 114
************************************************************
consensus_14342#0 CATGAAAGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCT 180
consensus_14342#1 CATGAAAGTGGTCTGATTTCTACTTATCAAGTTCACAAAAATTGAGATCACATGGTTTCT 174
************************************************************
consensus_14342#0 ATACAATGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGC 240
consensus_14342#1 ATACAAGGGTTTCTTCCATGCGACAATATAGAAAAATAGCAATCATAGCACTAGGAAAGC 234
****** *****************************************************
consensus_14342#0 CGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCA 300
consensus_14342#1 CGATAGCAAGATTGTACAGTTAGCAACGACTTCATAGTCCTCATAAAATGACCAGCTTCA 294
************************************************************
consensus_14342#0 CTGCCTGAAATGATCATCATTGCCACGAGAATTCCTCCATTGCTCCGATAGCTCCTCCCT 360
consensus_14342#1 CTGCCTGAAATGATCATCA----------------------------------------- 313
*******************
consensus_14342#0 CACTTCTTTAGCTTTGGACGATAGATTCTCAAGAGACTTGTTGGTCCTCACAGCAAATCT 420
consensus_14342#1 ------------------------------------------------------------
consensus_14342#0 CTGGAAGGTACGGTTGTTGGCGAGCCCCTCGACGATGAACTCGTTGACGACGTAGCTGAG 480
consensus_14342#1 ------------------------------------------------------------
consensus_14342#0 CACCCTCCCGAACAGGTTCCCGCCGCCGGCCATGGCGAAGAGCAGGAGGAAGCTTCCAGA 540
consensus_14342#1 ------------------------------------------------------------
consensus_14342#0 GAGAAGGCGGGGGTGGGAGGGGATTTTGCTATTATTAACCGGAGCGGGCGCTTGCCCCCC 600
consensus_14342#1 ------------------------------------------------------------
consensus_14342#0 TTG 603
consensus_14342#1 ---
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||