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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1435#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1997 fasta sequence
[CAGGCTTCAATGCAGCAGTTGCTGGGTGTTTCTTTGCCATTGAAACTGTACTGAGGCCACTGAAAGCAGAAAATTCACCTCCTTTTACAACTGCAATGATAATATTGGCTTCTGTTATATCATCTACTGTGTCAAATGTTCTGCTTGGAGAAAGGCCAGCTTTTATAGTGCCAGCGTATGAGCTAAAATCTGCTGCCGAGCTACCTTTATATCTCATCTTAGGAATGCTTTGTGGAGCGGTCAGTGTGGTATTTGGCCGGTTGGTTGTATGGTTTTCGAATTTTTTTGGATACTTAAAAGAAAGATACGATTTTCCTATTGTAGTATACCCTGCTTTGGGTGGACTGGGAGCTGGCCTCATAGCTCTCAAATATCCTGGCATTCTATACTGGGGTTTCACAAATGTTGAAGAAATACTACATACTGGGAAAAGTGCTTCTGCTCCTGGTATATGGTTGTTAACTCAGCTTGCAGCTGCAAAGGTAGTTGCAACTGCCCTTTGCAAGGGATCTGGCCTTGTGGGTGGGCTATATGCACCAAGCCTAATGATTGGGGCTGCTGTTGGAGCTGTTTTTGGAGGGTCAGCTGGATATTTGATAAATTCTGCTGTACCTGGTAATGCTGCTGTTGCACAGCCACAAGCTTATGCTCTAGTTGGAATGGCTGCTACACTAGCTTCAGTCTGTTCAGTCCCACTGACCTCAGTGCTGCTTCTCTTTGAACTGACAAAGGACTACAGGATTTTGCTTCCTCTCATGGGAGCAGTTGGGTTAGCAATCTGGGTTCCTTCTGTAGTAAACCAATCAAAGGATGGTGAACCATCTAGGTTTAGAACACCCAGGCGTGGTTATTCTTCACTTTCTTCAGAAGATAGAAATAGTAAAAGCTGGAGGCGAGGTGACAGTGTAAATGATCTTGAGCTCACTAGCTTACGGACTGATAACTATGACACCTATAATGAGGAAATGCTTCTAGATGATTTGAAGGTCTCCCAGGCCATGTCAAAGAGCTATGTTAAAATTCCAACATCTGCCATGGTGACAGAAGCTCTCAAGCTTTTGCATGATAAGCAGCAAAATTGCGGCCTTGTTGTGGATTGTGAAGATTTTCTCGAAGGAATTGTTACATTAGGGGATATTCGCCGTATGGGATTTGAATTACATGGGGACAGTTTCACAAGTGGAGACCAGCTCAAGCCCGCTGAAAATTCTTCAACCATATCATTGTGTCTTACTCGAGGATTCCAGTACGAGGGGAATGAACGTGGATTGCTAACCTGCTTTCCTGATACTGATTTGACCACTGCAAAAAACCTTATGGAGGCCAGAGGAATAAAGCAGCTGCCTGTCGTGAAGCGTGGTGTCGGCCATAGAACTGAAGGAAAACGCAAGCTTATTGCTCTTCTACATTATGATTCTATTGGTCACTGCTTACGGGAGGAAATTGAGAACTGGAAGGCCATATATCAAATAAAAGAGGACTTCCATCTCATAGCAAATGGGCATTGAACAGCATTACATTGACCAATATTACACCACATCAATCGCATGCAATTTGATATCCTTAAGGCATTTTTGCCAAATGGGGATACAGGAGGTATACACGAAGTTCAACTTGTACAGATTTGAGGCTCCTCTACAAAGAATTAAATTGCCATCTGAGGAAATTATTCAGGCTAGCTAGCCAATTTTGCAATAGAGGTTATGGTCCATTCTTGTTGCGAAGCAACTTCTACTTCACACGGGAGGAGATGGGTATGTATGAATTCAGTTATTCAGAATTGGAAAGTGGCATTGTAATGTATATCTTGTACCTGTACTATTTGTAACTGTGTAACATCCTGTTGCTGGGAAGCATCATATGCGCCAGCTTGTAGAGGTGCAGTCACACGAGAAACTAGTGTAATAAAGTGTGCAGCAGAAAATTTTGTCAAGAAGCCGATGTTGTAGGTTGTAGCGTCACATTGTATGTAACACTTTATATCAGCACTTGAACTG]
[+] EMBL AK101764 [CAGGCTTCAATGCAGCAGTTGCTGGGTGTTTCTTTGCCATTGAAACTGTACTGAGGCCACTGAAAGCAGAAAATTCACCTCCTTTTACAACTGCAATGATAATATTGGCTTCTGTTATATCATCTACTGTGTCAAATGTTCTGCTTGGAGAAAGGCCAGCTTTTATAGTGCCAGCGTATGAGCTAAAATCTGCTGCCGAGCTACCTTTATATCTCATCTTAGGAATGCTTTGTGGAGCGGTCAGTGTGGTATTTGGCCGGTTGGTTGTATGGTTTTCGAATTTTTTTGGATACTTAAAAGAAAGATACGATTTTCCTATTGTAGTATACCCTGCTTTGGGTGGACTGGGAGCTGGCCTCATAGCTCTCAAATATCCTGGCATTCTATACTGGGGTTTCACAAATGTTGAAGAAATACTACATACTGGGAAAAGTGCTTCTGCTCCTGGTATATGGTTGTTAACTCAGCTTGCAGCTGCAAAGGTAGTTGCAACTGCCCTTTGCAAGGGATCTGGCCTTGTGGGTGGGCTATATGCACCAAGCCTAATGATTGGGGCTGCTGTTGGAGCTGTTTTTGGAGGGTCAGCTGGATATTTGATAAATTCTGCTGTACCTGGTAATGCTGCTGTTGCACAGCCACAAGCTTATGCTCTAGTTGGAATGGCTGCTACACTAGCTTCAGTCTGTTCAGTCCCACTGACCTCAGTGCTGCTTCTCTTTGAACTGACAAAGGACTACAGGATTTTGCTTCCTCTCATGGGAGCAGTTGGGTTAGCAATCTGGGTTCCTTCTGTAGTAAACCAATCAAAGGATGGTGAACCATCTAGGTTTAGAACACCCAGGCGTGGTTATTCTTCACTTTCTTCAGAAGATAGAAATAGTAAAAGCTGGAGGCGAGGTGACAGTGTAAATGATCTTGAGCTCACTAGCTTACGGACTGATAACTATGACACCTATAATGAGGAAATGCTTCTAGATGATTTGAAGGTCTCCCAGGCCATGTCAAAGAGCTATGTTAAAATTCCAACATCTGCCATGGTGACAGAAGCTCTCAAGCTTTTGCATGATAAGCAGCAAAATTGCGGCCTTGTTGTGGATTGTGAAGATTTTCTCGAAGGAATTGTTACATTAGGGGATATTCGCCGTATGGGATTTGAATTACATGGGGACAGTTTCACAAGTGGAGACCAGCTCAAGCCCGCTGAAAATTCTTCAACCATATCATTGTGTCTTACTCGAGGATTCCAGTACGAGGGGAATGAACGTGGATTGCTAACCTGCTTTCCTGATACTGATTTGACCACTGCAAAAAACCTTATGGAGGCCAGAGGAATAAAGCAGCTGCCTGTCGTGAAGCGTGGTGTCGGCCATAGAACTGAAGGAAAACGCAAGCTTATTGCTCTTCTACATTATGATTCTATTGGTCACTGCTTACGGGAGGAAATTGAGAACTGGAAGGCCATATATCAAATAAAAGAGGACTTCCATCTCATAGCAAATGGGCATTGAACAGCATTACATTGACCAATATTACACCACATCAATCGCATGCAATTTGATATCCTTAAGGCATTTTTGCCAAATGGGGATACAGGAGGTATACACGAAGTTCAACTTGTACAGATTTGAGGCTCCTCTACAAAGAATTAAATTGCCATCTGAGGAAATTATTCAGGCTAGCTAGCCAATTTTGCAATAGAGGTTATGGTCCATTCTTGTTGCGAAGCAACTTCTACTTCACACGGGAGGAGATGGGTATGTATGAATTCAGTTATTCAGAATTGGAAAGTGGCATTGTAATGTATATCTTGTACCTGTACTATTTGTAACTGTGTAACATCCTGTTGCTGGGAAGCATCATATGCGCCAGCTTGTAGAGGTGCAGTCACACGAGAAACTAGTGTAATAAAGTGTGCAGCAGAAAATTTTGTCAAGAAGCCGATGTTGTAGGTTGTAGCGTCACATTGTATGTAACACTTTATATCAGCACTTGAACTG]
consensusID : consensus_1435#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence
[ACACCTATAATGAGGAAATGCTTCTAGATGATTTGAAGGTCTCCCAGGCCATGTCAAAGAGCTATGTTAAAATTCCAACATCTGCCATGGTGACAGAAGCTCTCAAGCTTTTGCATGATAAGCAGCAAAATTGCGGCCTTGTTGTGGATTGTGAAGATTTTCTCGAAGGAATTGTTACATTAGGGGATATTCGCCGTATGGGATTTGAATTACATGGGGACAGTTTCACAAGTGGAGACCAGCTCAAGCCCGCTGTACGTTTGAATGGTGAAAATATGTATTTCCATTAGAATAGTTCTACGTAAATAAGTAATGAATTGGTGTGCATCATTTCACTTGGTCTGGTCTAGGCTGGACACTGATTTTGTTTAAACCATTGCCATTTAATGCGATAGCTTAAAATGAATTCTAAATTGAATGTACATGCTTTCTATCTCTGAAAGGTAAAAACAAAACAATTTACACAGGCTGGCAAGG]
[+] EMBL CF323585 [ACACCTATAATGAGGAAATGCTTCTAGATGATTTGAAGGTCTCCCAGGCCATGTCAAAGAGCTATGTTAAAATTCCAACATCTGCCATGGTGACAGAAGCTCTCAAGCTTTTGCATGATAAGCAGCAAAATTGCGGCCTTGTTGTGGATTGTGAAGATTTTCTCGAAGGAATTGTTACATTAGGGGATATTCGCCGTATGGGATTTGAATTACATGGGGACAGTTTCACAAGTGGAGACCAGCTCAAGCCCGCTGTACGTTTGAATGGTGAAAATATGTATTTCCATTAGAATAGTTCTACGTAAATAAGTAATGAATTGGTGTGCATCATTTCACTTGGTCTGGTCTAGGCTGGACACTGATTTTGTTTAAACCATTGCCATTTAATGCGATAGCTTAAAATGAATTCTAAATTGAATGTACATGCTTTCTATCTCTGAAAGGTAAAAACAAAACAATTTACACAGGCTGGCAAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1435#0 CAGGCTTCAATGCAGCAGTTGCTGGGTGTTTCTTTGCCATTGAAACTGTACTGAGGCCAC 60
consensus_1435#1 ------------------------------------------------------------
consensus_1435#0 TGAAAGCAGAAAATTCACCTCCTTTTACAACTGCAATGATAATATTGGCTTCTGTTATAT 120
consensus_1435#1 ------------------------------------------------------------
consensus_1435#0 CATCTACTGTGTCAAATGTTCTGCTTGGAGAAAGGCCAGCTTTTATAGTGCCAGCGTATG 180
consensus_1435#1 ------------------------------------------------------------
consensus_1435#0 AGCTAAAATCTGCTGCCGAGCTACCTTTATATCTCATCTTAGGAATGCTTTGTGGAGCGG 240
consensus_1435#1 ------------------------------------------------------------
consensus_1435#0 TCAGTGTGGTATTTGGCCGGTTGGTTGTATGGTTTTCGAATTTTTTTGGATACTTAAAAG 300
consensus_1435#1 ------------------------------------------------------------
consensus_1435#0 AAAGATACGATTTTCCTATTGTAGTATACCCTGCTTTGGGTGGACTGGGAGCTGGCCTCA 360
consensus_1435#1 ------------------------------------------------------------
consensus_1435#0 TAGCTCTCAAATATCCTGGCATTCTATACTGGGGTTTCACAAATGTTGAAGAAATACTAC 420
consensus_1435#1 ------------------------------------------------------------
consensus_1435#0 ATACTGGGAAAAGTGCTTCTGCTCCTGGTATATGGTTGTTAACTCAGCTTGCAGCTGCAA 480
consensus_1435#1 ------------------------------------------------------------
consensus_1435#0 AGGTAGTTGCAACTGCCCTTTGCAAGGGATCTGGCCTTGTGGGTGGGCTATATGCACCAA 540
consensus_1435#1 ------------------------------------------------------------
consensus_1435#0 GCCTAATGATTGGGGCTGCTGTTGGAGCTGTTTTTGGAGGGTCAGCTGGATATTTGATAA 600
consensus_1435#1 ------------------------------------------------------------
consensus_1435#0 ATTCTGCTGTACCTGGTAATGCTGCTGTTGCACAGCCACAAGCTTATGCTCTAGTTGGAA 660
consensus_1435#1 ------------------------------------------------------------
consensus_1435#0 TGGCTGCTACACTAGCTTCAGTCTGTTCAGTCCCACTGACCTCAGTGCTGCTTCTCTTTG 720
consensus_1435#1 ------------------------------------------------------------
consensus_1435#0 AACTGACAAAGGACTACAGGATTTTGCTTCCTCTCATGGGAGCAGTTGGGTTAGCAATCT 780
consensus_1435#1 ------------------------------------------------------------
consensus_1435#0 GGGTTCCTTCTGTAGTAAACCAATCAAAGGATGGTGAACCATCTAGGTTTAGAACACCCA 840
consensus_1435#1 ------------------------------------------------------------
consensus_1435#0 GGCGTGGTTATTCTTCACTTTCTTCAGAAGATAGAAATAGTAAAAGCTGGAGGCGAGGTG 900
consensus_1435#1 ------------------------------------------------------------
consensus_1435#0 ACAGTGTAAATGATCTTGAGCTCACTAGCTTACGGACTGATAACTATGACACCTATAATG 960
consensus_1435#1 ------------------------------------------------ACACCTATAATG 12
************
consensus_1435#0 AGGAAATGCTTCTAGATGATTTGAAGGTCTCCCAGGCCATGTCAAAGAGCTATGTTAAAA 1020
consensus_1435#1 AGGAAATGCTTCTAGATGATTTGAAGGTCTCCCAGGCCATGTCAAAGAGCTATGTTAAAA 72
************************************************************
consensus_1435#0 TTCCAACATCTGCCATGGTGACAGAAGCTCTCAAGCTTTTGCATGATAAGCAGCAAAATT 1080
consensus_1435#1 TTCCAACATCTGCCATGGTGACAGAAGCTCTCAAGCTTTTGCATGATAAGCAGCAAAATT 132
************************************************************
consensus_1435#0 GCGGCCTTGTTGTGGATTGTGAAGATTTTCTCGAAGGAATTGTTACATTAGGGGATATTC 1140
consensus_1435#1 GCGGCCTTGTTGTGGATTGTGAAGATTTTCTCGAAGGAATTGTTACATTAGGGGATATTC 192
************************************************************
consensus_1435#0 GCCGTATGGGATTTGAATTACATGGGGACAGTTTCACAAGTGGAGACCAGCTCAAGCCCG 1200
consensus_1435#1 GCCGTATGGGATTTGAATTACATGGGGACAGTTTCACAAGTGGAGACCAGCTCAAGCCCG 252
************************************************************
consensus_1435#0 CTGAAAATTCTTCAACCATATCATTGTGTCTTACTCGAGGATTCCAGTACGAGGGGAATG 1260
consensus_1435#1 CTGTACGTT--TGAATGGTGAAAATATGTATTTCCATTAGAAT--AGTTCTACGTAAATA 308
*** * ** * ** * * * *** ** * ** * *** * * * ***
consensus_1435#0 AACG-TGGATTGCTAACCTGCTTTCCTGATACTGATTTGACCACTGCAAAAAACCTTATG 1319
consensus_1435#1 AGTAATGAATTGGTG---TGCATCATTTCACTTGGTCTGGTCTAGGCTGGACAC-TGATT 364
* ** **** * *** * * ** * ** * ** * ** * **
consensus_1435#0 GAGGCCAGAGGAATAAAGCAGCTGCCTGTCGTGA-AGCGTGGTGTCGGCCATAGAACTGA 1378
consensus_1435#1 TTGTTTAAACCATT------GCCATTTAATGCGATAGCTTAAAATGAATTCTA-AATTGA 417
* * * * * ** * * ** *** * * ** ** ***
consensus_1435#0 AGGAAAACGCAAGCTTATTGCTCTTCTACATTATGATTCTATTGGTCACTGCTTACGGGA 1438
consensus_1435#1 ATGTA----CATGCTTTCTATCTCTGAAAGGTAAAAACAAAACAATTTACACAGGCTGGC 473
* * * ** **** * * * ** * * * * * **
consensus_1435#0 GGAAATTGAGAACTGGAAGGCCATATATCAAATAAAAGAGGACTTCCATCTCATAGCAAA 1498
consensus_1435#1 AAGG-------------------------------------------------------- 477
consensus_1435#0 TGGGCATTGAACAGCATTACATTGACCAATATTACACCACATCAATCGCATGCAATTTGA 1558
consensus_1435#1 ------------------------------------------------------------
consensus_1435#0 TATCCTTAAGGCATTTTTGCCAAATGGGGATACAGGAGGTATACACGAAGTTCAACTTGT 1618
consensus_1435#1 ------------------------------------------------------------
consensus_1435#0 ACAGATTTGAGGCTCCTCTACAAAGAATTAAATTGCCATCTGAGGAAATTATTCAGGCTA 1678
consensus_1435#1 ------------------------------------------------------------
consensus_1435#0 GCTAGCCAATTTTGCAATAGAGGTTATGGTCCATTCTTGTTGCGAAGCAACTTCTACTTC 1738
consensus_1435#1 ------------------------------------------------------------
consensus_1435#0 ACACGGGAGGAGATGGGTATGTATGAATTCAGTTATTCAGAATTGGAAAGTGGCATTGTA 1798
consensus_1435#1 ------------------------------------------------------------
consensus_1435#0 ATGTATATCTTGTACCTGTACTATTTGTAACTGTGTAACATCCTGTTGCTGGGAAGCATC 1858
consensus_1435#1 ------------------------------------------------------------
consensus_1435#0 ATATGCGCCAGCTTGTAGAGGTGCAGTCACACGAGAAACTAGTGTAATAAAGTGTGCAGC 1918
consensus_1435#1 ------------------------------------------------------------
consensus_1435#0 AGAAAATTTTGTCAAGAAGCCGATGTTGTAGGTTGTAGCGTCACATTGTATGTAACACTT 1978
consensus_1435#1 ------------------------------------------------------------
consensus_1435#0 TATATCAGCACTTGAACTG 1997
consensus_1435#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||