These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14354#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 2088 fasta sequence [TTTCTTTGTCTCGAACTTCGTGAAGAACTCCATTCTATCTCTCCAACAAAAAAGTGGGGCTGCGCCCCAGTTGTACACCCCCTTCGTTCGGAGAACCTTTGTTGATTCTGAACTTCGTTCGCAAAGTAAGCGTCCTTTTAACGGGCCAGCCCTTTTTAATGCGCCGCTTGACCCTGTTTTGAAAATGAGCTTTGCTTTTCTGGGCGCTGGGCGCTCCCGTGGTTCGCGAGAAGGAAAAAGGACTAATCTTTTGTTACATCTGGCACGAGATGAAAAAGAGAGAGCTTCGTCTATCGATGAACAGCAGATTGACGGAGCTCTTGGCATTGCTTTGTTTTTCTCTTTTTTCCTATTAGCGAGTTCCGATCCTTTTGTTCGAAATTTCTTCGTTTGTACCGAACCGCTTGCAGAATCAAATCCTGTTCCACAAGATCCTATATTAGCTATACATCCTCCTTGCATTTATGCCGGAGACGTCGCCAGTGCTATGGGCTTTGGGTTATGTAGATCAAAAATGATGAATGGGATTGTGGCACTCCACTCGCCGCCAATGCGGAAGGATGCCGCCGAAAAGAATGGAACGCTGCTTCGCTCTGCTGGATGCGTCGGATCCCATATAAGAAGCTCGCTCTTTACCCGATCATTCAAACATTTTGTGGGCGGCGCGCCTGCTCTATTGTTGCGTAGCAATAGAAGCCTACTCATGCTGCTTCGGCGGCGCTTTTTCGCCTTCTCTTCGCTCTGGACAGGAGCGCTAATGGACACGGGGAGGGAGCAGGCGAAGCGTGTCGTTCGTAATGGAAAGAAAGACACCACTACTTCGCCTCTTTGTTGGACCGCCGGCGCGAACACAGTGGTCTCTGACCAGGACCAGGAACCAATTCGAATTTGGATCTTGACATGTTGGTTGTTTTTAACCGTAGGCATCTCGCCAGGAAGTTGGTGGGCTCATCATGAATTAGGTTGGGGTGGCTGGTGGTTTCGGGATCCCGTAGAAAATGCGTCTTTTATGCCTTGGGTATTAGCCACAGCTTGTATTCATTCAGTAATTCTACCCCTTCTTCATTCTTGGACCTTGCTCCTGAATATTTTGACTCTTCCATGCTGTGTCTCAGGAACCTTTTCAATACGGTCCGGATTGCTAGCTCCCGTTCATAGTTCTGCTACAGACGATACACGAGGAAGATTTTTATGGTGGTTCTTCCTTCTAATTACAGGCATATCTATGACTCTTTTTTACCAGATGAAGCAGGAGGCATCGGTCCGTAGAACCTATAAAAAAGAGATGGTTGTGGCGCGAAGTACTCTTGTGCACCTACGTCACTCGGCTCGCGCGCAACCCCGCCCCGTTATGTTATGGAAGAATTTAGCTTATTGCTGGGCTGGTTATTCAGAGCCAGCAACTGGCTGCCGGATTTCGTCCCGTCCGTAGCGCTTCGGAAGTCACTCTGGCGTGGCGCTGCTGGATACTTCTGATCAATAGGAATAGGGGGAAAAAAAAGCTTATGATGAGCATCTATTGGAGTCGATCATTTCCAAGATCTAATTCTAGTTTCTTATTATGTAGTGGAAACGCCTCACAATCTTCAGTTTTACGCTTACGCTTAAGGGAAGAAATGTTCTTGGTGGATGCAGGCCTTGGTACCCCCAAAATTTGTATGCAAGATGAGCTTACAGGACTGCCAATCAAGCGAGCCACCAGGTTTGAGAATAAGGTGGGATCCAAGAATGTAGTGGCTGGTGAATCACTGATCAAAAAGCGGATTGAAGAGAGATTCTTCATCGATCTAGTGGCCGGTGAATCACTGATCAAAGAGCGAGCAGCCGCCAGGTTTAATGATTTTGTGGGATCCCTGGATGTAGC-GGCTGGCGAACCGCTTCTTCTTCCACAAAGATTCAGACA-AA-ACCGAGCTTGGATAGAA-CTGAAGAAGATTTGGCA-AACGAAGAAAAAGGTCAAAGGGTTTCGTATTAAAAAAGAAAAAAAAAAAAAGGATAGCGAATGATCGATTCACCATTGATAGCTTTAACCACTAAAAGGAGGGATATTGTGATAATAGCGGCAAGATTAAACAAGAACTTGATGAAAAA] [+] EMBL AK064504 [TTTCTTTGTCTCGAACTTCGTGAAGAACTCCATTCTATCTCTCCAACAAAAAAGTGGGGCTGCGCCCCAGTTGTACACCCCCTTCGTTCGGAGAACCTTTGTTGATTCTGAACTTCGTTCGCAAAGTAAGCGTCCTTTTAACGGGCCAGCCCTTTTTAATGCGCCGCTTGACCCTGTTTTGAAAATGAGCTTTGCTTTTCTGGGCGCTGGGCGCTCCCGTGGTTCGCGAGAAGGAAAAAGGACTAATCTTTTGTTACATCTGGCACGAGATGAAAAAGAGAGAGCTTCGTCTATCGATGAACAGCAGATTGACGGAGCTCTTGGCATTGCTTTGTTTTTCTCTTTTTTCCTATTAGCGAGTTCCGATCCTTTTGTTCGAAATTTCTTCGTTTGTACCGAACCGCTTGCAGAATCAAATCCTGTTCCACAAGATCCTATATTAGCTATACATCCTCCTTGCATTTATGCCGGAGACGTCGCCAGTGCTATGGGCTTTGGGTTATGTAGATCAAAAATGATGAATGGGATTGTGGCACTCCACTCGCCGCCAATGCGGAAGGATGCCGCCGAAAAGAATGGAACGCTGCTTCGCTCTGCTGGATGCGTCGGATCCCATATAAGAAGCTCGCTCTTTACCCGATCATTCAAACATTTTGTGGGCGGCGCGCCTGCTCTATTGTTGCGTAGCAATAGAAGCCTACTCATGCTGCTTCGGCGGCGCTTTTTCGCCTTCTCTTCGCTCTGGACAGGAGCGCTAATGGACACGGGGAGGGAGCAGGCGAAGCGTGTCGTTCGTAATGGAAAGAAAGACACCACTACTTCGCCTCTTTGTTGGACCGCCGGCGCGAACACAGTGGTCTCTGACCAGGACCAGGAACCAATTCGAATTTGGATCTTGACATGTTGGTTGTTTTTAACCGTAGGCATCTCGCCAGGAAGTTGGTGGGCTCATCATGAATTAGGTTGGGGTGGCTGGTGGTTTCGGGATCCCGTAGAAAATGCGTCTTTTATGCCTTGGGTATTAGCCACAGCTTGTATTCATTCAGTAATTCTACCCCTTCTTCATTCTTGGACCTTGCTCCTGAATATTTTGACTCTTCCATGCTGTGTCTCAGGAACCTTTTCAATACGGTCCGGATTGCTAGCTCCCGTTCATAGTTCTGCTACAGACGATACACGAGGAAGATTTTTATGGTGGTTCTTCCTTCTAATTACAGGCATATCTATGACTCTTTTTTACCAGATGAAGCAGGAGGCATCGGTCCGTAGAACCTATAAAAAAGAGATGGTTGTGGCGCGAAGTACTCTTGTGCACCTACGTCACTCGGCTCGCGCGCAACCCCGCCCCGTTATGTTATGGAAGAATTTAGCTTATTGCTGGGCTGGTTATTCAGAGCCAGCAACTGGCTGCCGGATTTCGTCCCGTCCGTAGCGCTTCGGAAGTCACTCTGGCGTGGCGCTGCTGGATACTTCTGATCAATAGGAATAGGGGGAAAAAAAAGCTTATGATGAGCATCTATTGGAGTCGATCATTTCCAAGATCTAATTCTAGTTTCTTATTATGTAGTGGAAACGCCTCACAATCTTCAGTTTTACGCTTACGCTTAAGGGAAGAAATGTTCTTGGTGGATGCAGGCCTTGGTACCCCCAAAATTTGTATGCAAGATGAGCTTACAGGACTGCCAATCAAGCGAGCCACCAGGTTTGAGAATAAGGTGGGATCCAAGAATGTAGTGGCTGGTGAATCACTGATCAAAAAGCGGATTGAAGAGAGATTCTTCATCGATCTAGTGGCCGGTGAATCACTGATCAAAGAGCGAGCAGCCGCCAGGTTTAATGATTTTGTGGGATCCCTGGATGTAGC GGCTGGCGAACCGCTTCTTCTTCCACAAAGATTCAGACA AA ACCGAGCTTGGATAGAA CTGAAGAAGATTTGGCA AACGAAGAAAAAGGTCAAAGGGT ] [+] EMBL AU164407 [ AAGAGAGATTCTTCATCGATCTAGTGGCCGGTGAATCACTGATCAAAGAGCGAGCAGCCGCCAGGTTTAATGATTTTGTGGGATCCCTGGATGTAGC GGCTGGCGAACCGCTTCTTCTTCCACAAAGATTCAGACA AA ACCGAGCTTGGATAGAA CTGAAGAAGATTTGGCA AACGAAGAAAAAGGTCAAAGGGT ] [+] EMBL AU162192 [ AAGAGAGATTCTTCATCGATCTAGTGGCCGGTGAATCACTGATCAAAGAGCGAGCAGCCGCCAGGTTTAATGATTTTTTGGGATCCCTGGATGTAGC GGCTGGCGAACCGCTTCTNCTTCCACAAAGATTCAGACA AA ACCGAGCTTGGATAGAA CTGAAGAAGATTTGGCA AACGAAGAAAAAGGTCAAAGGGT ] [+] EMBL AU164409 [ AAGAGAGATTCTTCATCGATCTAGTGGCCGGTGAATCACTGATCAAAGAGCGAGCAGCCGCCAGGTTTAATGATTTTGTGGGATCCCTGGATGTAGC GGCTGGCGAACCGCTTCTTCTTCCACAAAGATTCAGACA AA ACCGAGCTTGGATAGAA CTGAAGAAGATTTGGCA AACGAAGAAAAAGGTCAAAGGGT ] [+] EMBL AU075722 [ AAGAGAGATTCTTCATCGATCTAGTGGCCGGTGAATCACTGATCAAAGAGCGAGCAGCCGCCAGGTTTAATGATTTTGTGGGATCCCTGGATGTAGC GGCTGGCGAACCGCTTCTTCTTCCACAAAGATTCAGACA AA ACCGAGCTTGGATAGAA CTGAAGAAGATTTGGCA AACGAAGAAAAAGGTCAAAGGGT ] [+] EMBL AU075725 [ AAGAGAGATTCTTCATCGATCTAGTGGCCGGTGAATCACTGATCAAAGAGCGAGCAGCCGCCAGGTTTAATGATTTTGTGGGATCCCTGGATGTAGC GGCTGGCGAACCGCTTCTTCTTCCACAAAGATTCAGACA AA ACCGAGCTTGGATAGAA CTGAAGAAGATTTGGCA AACGAAGAAAAAGGTCAAAGGGT ] [+] EMBL AU075726 [ AAGAGAGATTCTTCATCGATCTAGTGGCCGGTGAATCACTGATCAAAGAGCGAGCAGCCGCCAGGTTTAATGATTTTGTGGGATCCCTGGATGTAGC GGCTGGCGAACCGCTTCTTCTTCCACAAAGATTCAGACA AA ACCGAGCTTGGATAGAA CTGAAGAAGATTTGGCA AACGAAGAAAAAGGTCAAAGGGT ] [+] EMBL AU078226 [ AAGAGAGATTCTTCATCGATCTAGTGGCCGGTGAATCACTGATCAAAGAGCGAGCAGCCGCCAGGTTTAATGATTTTGTGGGATCCCTGGATGTAGC GGCTGGCGAACCGCTTCTTCTTCCACAAAGATTCAGACA AA ACCGAGCTTGGATAGAA CTGAAGAAGATTTGGCA AACGAAGAAAAAGGTCAAAGGGT ] [+] EMBL AU078694 [ AAGAGAGATTCTTCATCGATCTAGTGGCCGGTGAATCACTGATCAAAGAGCGAGCAGCCGCCAGGTTTAATGATTTTGTGGGATCCCTGGATGTAGC GGCTGGCGAACCGCTTCTTCTTCCACAAAGATTCAGACA AA ACCGAGCTTGGATAGAA CTGAAGAAGATTTGGCA AACGAAGAAAAAGGTCAAAGGGT ] [+] EMBL AU094909 [ AAGAGAGATTCTTCATCGATCTAGTGGCCGGTGAATCACTGATCAAAGAGCGAGCAGCCGCCAGGTTTAATGATTTTGTGGGATCCCTGGATGTAGC GGCTGGCGAACCGCTTCTTCTTCCACAAAGATTCAGACA AA ACCGAGCTTGGATAGAA CTGAAGAAGATTTGGCA AACGAAGAAAAAGGTCAAAGGGT ] [+] EMBL AU164333 [ AAGAGAGATTCTTCATCGATCTAGTGGCCGGTGAATCACTGATCAAAGAGCGAGCAGCCGCCAGGTTTAATGATTTTGTGGGATCCCTGGATGTAGC GGCTGGCGAACCGCTTCTTCTTCCACAAAGATTCAGACA AA ACCGAGCTTGGATAGAA CTGAAGAAGATTTGGCA AACGAAGAAAAAGGTCAAAGGGT ] [+] EMBL AU164358 [ AAGAGAGATTCTTCATCGATCTAGTGGCCGGTGAATCACTGATCAAAGAGCGAGCAGCCGCCAGGTTTAATGATTTTGTGGGATCCCTGGATGTAGC GGCTGGCGAACCGCTTCTTCTTCCACAAAGATTCAGACA AA ACCGAGCTTGGATAGAA CTGAAGAAGATTTGGCA AACGAAGAAAAAGGTCAAAGGGT ] [+] EMBL AU164377 [ AGAGAGATTCTTCATCGATCTAGTGGCCGGTGAATCACTGATCAAAGAGCGAGCAGCCGCCAGGTTTAATGATTTTGTGGGATCCCTGGATGTAGC GGCTGGCGAACCGCTTCTTCTTCCACAAAGATTCAGACA AA ACCGAGCTTGGATAGAA CTGAAGAAGATTTGGCA AACGAAGAAAAAGGTCAAAGGGT ] [+] EMBL AU164378 [ AGAGAGATTCTTCATCGATCTAGTGGCCGGTGAATCACTGATCAAAGAGCGAGCAGCCGCCAGGTTTAATGATTTTGTGGGATCCCTGGATGTAGC GGCTGGCGAACCGCTTCTTCTTCCACAAAGATTCAGACA AA ACCGAGCTTGGATAGAA CTGAAGAAGATTTGGCA AACGAAGAAAAAGGTCAAAGGGT ] [+] EMBL AU172934 [ AGAGAGATTCTTCATCGATCTAGTGGCCGGTGAATCACTGATCAAAGAGCGAGCAGCCGCCAGGTTTAATGATTTTGTGGGATCCCTGGATGTAGC GGCTGGCGAACCGCTTCTTCTTCCACAAAGATTCAGACA AA ACCGAGCTTGGATAGAA CTGAAGAAGATTTGGCA AACGAAGAAAAAGGTCAAAGGGT ] [+] EMBL BI802574 [ CAGGTTTAATGATTTTGTGGGATCCCTGGATGTAGCAGGCTGGCGAACCGCTTCTTCTTCCACAAAGATTCAGACACAATACCGAGCTTGGATAGAACCTGAAGAAGATTTGGCATAACGAAGAAAAAGGTCAAAGGGTTTCGTATTAAAAAAGAAAAAAAAAAAAAGGATAGCGAATGATCGATTCACCATTGATAGCTTTAACCACTAAAAGGAGGGATATTGTGATAATAGCGGCAAGATTAAACAAGAACTTGATGAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||