These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14356#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1513 fasta sequence [CTCCTCCTTCCCCTCTCCGCTCGCCTCCGCGATTCCCTTCCCATTTCGCCGCCGATGAAGGGCGGCGGGGGCGCGGCGGCGGCGTCGGCGGCGCCGGGGGACTACGTCTACTTCAAGTCCGTCGTCCCGCTCCACAAGATCTCGATTGGACCGAAATTATGGAGGTACTATGATTTTGGACCAAAGACTGTTCCACCTCTTGTCTGCATCCCAGGAATTGCAGGAACGGCTGATGTGTACTACAAACAGATCATGTCTCTCTCTATGAAGGGTTATCGAGTGATGTCAATTGATGTTCCTCAAGTTTGGAATCACCAGGAATGGATTCATTCATTTGAAAAATTTTTGGACTCCATGAATATCCATCATGTTCATATTTATGGTACATCTCTTGGTGGATTTCTTGCACAAATATTTGCTCAACACCGTCCAAGGAGAGTAAAGTCCTTGGTCCTATCAAATACTTTTCTTGAGACACATAAGTTTGCTGCTGCTACGCCATGGTCTCCTGTTGTTAATTGGACCCCTTCTTTTTTGCTGAAGCGGTACCTATTGACAGGAATCCGAGATGGCCCCCATGAACCGTTTATTGCAGACTCAGTGGATTTTGTTGTGAGTCAGGTTGAGACGCTGTCAAGAGATGATCTCTCATCAAGGTTGATGTTAAATGTTAATGTTGCATCAGTTGGATCATTAATGCTACCTGATTCACTCATCACTATAATGGATACAAACGACTATTCCGCTGTTCCTCAGCAGTTAAAGGACCAAGTGAATGAAAGGTACCCAGGTGCAAGGCGTGCAGTACTAAAGACGGGTGGTGATTTCCCCTTCCTGTCACGTCCTGATGAGGTTAATTTGTACCTTCAGCTACATTTGAGACGAGTTGGAGTAGAACCTAGACCAGATCTGGTCCAAGGTTTCACACGTAATGGCAGTGCTGGGAGCTCAAAGGACCAAAAAGATGGTGGAAACAATTTTGACAATCATCCTGGAGATAATGGTGGCCCTGGTTCAGGGGGTCATGATCATGAGACACAGAATTCTGGATCAGAATCACATGATTCTGATGAATCAATACCAACGAGCACAATGCTTGCCAATACCATTCTAGGTACGGTTAGCTCAACCCTGCAAGCTTCACTATGTGTGCTCTT-GATAC-ATCATTACTATGAGTCTG-CTT-TGTATATTTC-GTCGAGACA-GCCATTGGATGTATGAAGTAGGGAATCACCCCTTTTGCCC-CCATGTAGAGCTCGCTTTGTAGAATATCATCGTGGTACG-AGTGTCATAGCTTCTTTGGAGTGGGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGA-AAA-CAACTTCTGTATGTTTGTATATTAGCTCTTGTTTCT-TTATCAATCCTTCTTTTTGTGTTTCTAGGCCTGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTAATTTTCTTGTAGTTGCACCATAAAAAGTTGCGTACAAAAAAAAAA] [+] EMBL AK067281 [CTCCTCCTTCCCCTCTCCGCTCGCCTCCGCGATTCCCTTCCCATTTCGCCGCCGATGAAGGGCGGCGGGGGCGCGGCGGCGGCGTCGGCGGCGCCGGGGGACTACGTCTACTTCAAGTCCGTCGTCCCGCTCCACAAGATCTCGATTGGACCGAAATTATGGAGGTACTATGATTTTGGACCAAAGACTGTTCCACCTCTTGTCTGCATCCAAGGAATTGCAGGAACGGCTGATGTGTACTACAAACAGATCATGTCTCTCTCTATGAAGGGTTATCGAGTGATGTCAATTGATGTTCCTCAAGTTTGGAATCACCAGGAATGGATTCATTCATTTGAAAAATTTTTGGACTCCATGAATATCCATCATGTTCATATTTATGGTACATCTCTTGGTGGATTTCTTGCACAAATATTTGCTCAACACCGTCCAAGGAGAGTAAAGTCCTTGGTCCTATCAAATACTTTTCTTGAGACACATAAGTTTGCTGCTGCTACGCCATGGTCTCCTGTTGTTAATTGGACCCCTTCTTTTTTGCTGAAGCGGTACCTATTGACAGGAATCCGAGATGGCCCCCATGAACCGTTTATTGCAGACTCAGTGGATTTTGTTGTGAGTCAGGTTGAGACGCTGTCAAGAGATGATCTCTCATCAAGGTTGATGTTAAATGTTAATGTTGCATCAGTTGGATCATTAATGCTACCTGATTCACTCATCACTATAATGGATACAAACGACTATTCCGCTGTTCCTCAGCAGTTAAAGGACCAAGTGAATGAAAGGTACCCAGGTGCAAGGCGTGCAGTACTAAAGACGGGTGGTGATTTCCCCTTCCTGTCACGTCCTGATGAGGTTAATTTGTACCTTCAGCTACATTTGAGACGAGTTGGAGTAGAACCTAGACCAGATCTGGTCCAAGGTTTCACACGTAATGGCAGTGCTGGGAGCTCAAAGGACCAAAAAGATGGTGGAAACAATTTTGACAATCATCCTGGAGATAATGGTGGCCCTGGTTCAGGGGGTCATGATCATGAGACACAGAATTCTGGATCAGAATCACATGATTCTGATGAATCAATACCAACGAGCACAATGCTTGCCAATACCATTCTAGGTACGGTTAGCTCAACCCTGCAAGCTTCACTATGTGTGCTCTT GATAC ATCATTACTATGAGTCTG CTT TGTATATTTC GTCGAGACA GCCATTGGATGTATGAAGTAGGGAATCACCCCTTTTGCCC CCATGTAGAGCTCGCTTTGTAGAATATCATCGTGGTACG AGTGTCATAGCTTCTTTGGAGTGGGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGA AAA CAACTTCTGTATGTTTGTATATTAGCTCTTGTTTCT TTATCAATCCTTCTTTTTGTGTTTCTAGGCCTGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTAATTTTCTTGTAGTTGCACCATAAAAAGTTGCGTA ] [+] EMBL CB653357 [ CCTTCCCATTTCGCCGCCGATGAAGGGCGGCGGGGGCGCGGCGGCGGCGTCGGCGGCGCCGGGGGACTACGTCTACTTCAAGTCCGTCGTCCCGCTCCACAAGATCTCGATTGGACCGAAATTATGGAGGTACTATGATTTTGGACCAAAGACTGTTCCACCTCTTGTCTGCATCCCAGGAATTGCAGGAACGGCTGATGTGTACTACAAACAGATCATGTCTCTCTCTATGAAGGGTTATCGAGTGATGTCAATTGATGTTCCTCAAGTTTGGAATCACCAGGAATGGATTCATTCATTTGAAAAATTTTTGGACTCCATGAATATCCATCATGTTCATATTTATGGTACATCTCTTGGTGGATTTCTTGCACAAATATTTGCTCAACACCGTCCAAGGAGAGTAAAGTCCTTGGTCCTATCAAATACTTTTCTTGAGACACATAAGTTTGCTGCTGCTACGCCATGGTCTCCTGTTGTTAATTGGACCCCTTCTTTTTTGCTGAAGCGGTACCTATTGACAGGAATCCGAGATGGCCCCCATGAACCGTTTATTGCAGACTCAGTGGATTTTGTTGTGAGTCAGGTTGAGACGCTGTCAAGAGATGATCTCTCATCAAGGTTGATGTTAAATGTTAATGTTGCATCAGTTGGATCATTAATGCTACCTGATTCACTCATCACTATAATGGATACAAACGACTATTCCGCTGTTCCTCAGCAGTTAAAGGACCAAGTGAATGAAAGGTACCCAGGTGCAAGGCGTGCAGTACTAAAGACGGGTGGTGATTTCCCCTTCCTGTCAC ] [+] EMBL CB653395 [ CCTTCCCCTTTCGCCGCCGATGAAGGGCGGCGGGGGCGCGGCGGCGGCGTCTGCGGCGCCGGGGGACTACGTCTACTTCAAGTCCGTCGTCCCGCTCCACAAGATCTCGATTGGACCGAAATTATGGAGGTACTATGATTTTGGACCAAAGACTGTTCCACCTCTTGTCTGCATCCCAGGAATTGCAGGAACGGCTGATGTGTACTACAAACAGATCATGTCTCTCTCTATGAAGGGTTATCGAGTGATGTCAATTGATGTTCCTCAAGTTTGGAATCACCAGGAATGGATTCATTCATTTGAAAAATTTTTGGACTCCATGAATATCCATCATGTTCATATTTATGGTACATCTCTTGGTGGATTTCTTGCACAAATATTTGCTCAACACCGTCCAAGGAGAGTAAAGTCCTTGGTCCTATCAAATACTTTTCTTGAGACACATAAGTTTGCTGCTGCTACGCCATGGTCTCCTGTTGTTAATTGGACCCCTTCTTTTTTGCTGAAGCGGTACCTATTGACAGGAATCCGAGATGGCCCCCATGAACCGTTTATTGCAGACTCAGTGGATTTTGTTGTGAGTCAGGTTGAGACGCTGTCAAGAGATGATCTCTCATCAAGGTTGA ] [+] EMBL AU077454 [ GGACCGAAATTATGGAGGTACTATGATTTTGGACCAAAGACTGTTCCACCTCTTGTCTGCATCCCAGGAATTGCAGGAACGGCTGATGTGTACTACAAACAGATCATGTCTCTCTCTATGAAGGGTTATCGAGTGATGTCAATTGATGTTCCTCAAGTTTGGAATCACCAGGAATGGATTCATTCATTTGAAAAATTTTTGGACTCCATGAATATCCATCATGTTCATATTTATGGTACATCTCTTGGTGGATTTCTTGCACAAATATTTGCTCAACACCGTCCAAGGAGAGTAAAGTCCTTGGTCCTATCAAATACTTTTCTTGAGACACATAAGTTTGCTGCTGCTACGCCATGGNCTCCTGTTGTTAATTGGACCCCTTCTTTTTTGCTGAAGCGGTACCTATTGACAGGAATCCGAGATGGCCCCCATGAACCGTTTATTGCAGACTCAGTGGATTTTGTTGTGAGTCAGGTTGAGACGCTGTCAAGAGATGATCTCTCATCAAGGTT ] [+] EMBL AU077453 [ GTGCAGTACTAAAGACGGGTGGTGATTTCCCCTTCCTGTCACGTCCTGATGAGGTTAATTTGTACCTTCAGCTACATTTGAGACGAGTTGGAGTAGAACCTAGACCAGATCTGGTCCAAGGTTTCACACGTAATGGCAGTGCTGGGAGCTCAAAGGACCAAAAAGATGGTGGAAACAATTTTGACAATCATCCTGGAGATAATGGTGGCCCTGGTTCAGGGGGTCATGATCATGAGACACAGAATTCTGGATCAGAATCACATGATTCTGATGAATCAATACCAACGAGCACAATGCTTGCCAATACCATTCTAGGTACGGTTAGCTCAACCCTGCAAGCTTCACTATGTGTGCTCTT GATAC ATCATTACTATGAGTCTG CTT TGTATATTTC GTCGAGACA GCCATTGGATGTATGAAGTAGGGAATCACCCCTTTTGCCC CCATGTAGAGCTCGCTTTGTAGAATATCATCGTGGTACG AGTGTCATAGCTTCTTTGGAGTGGGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGA AAA CAACTTCTGTATGTTTGTATATTAGCTCTTGTTTCT TTATCAATCCTTCTTTTTGTGTTTCTAGGCCTGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTAATTTTCTTGTAGTTGCACCATAAAAAGTTGCGTACAAAAAAAAAA] [+] EMBL BI811406 [ CTCTTGGATACAATCAGTACTATGAGTCCGCCTTGTGTATATTTCGGTCGAGACACGCCCTTGGATGTATGAAATAGGGAATCACCCCGTTGGCCCACCCTGTAGAGCTCGCTTTGTAGAATATCATCGTGGTACG AGTGTCATAGCTTCTTTGGAGTGGGTTCTTACTTCGTTGCTGCCCACGGGAAAGGCACATCAACAACCAGGAGAAACCAACTTCTGTATGTTTGTATATTAGCTCTTGTTTCTGTTATCCATCCTTCTTTTTGTGTTTCTAGGCCTGTAAATTGAATTTGATCT ] [+] EMBL D42836 [ ACCCCTTNTGCCC CCATGTAGAGCTCGCTNTGTAGAATATCACCGTGGTACGAAGTGTCATAGCTTCTTTGGAGTGGGTTCTTACNACGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGA AAA CAACTTCTGTATGTTTGTATATTAGCTCTTGTTTCT TTATCAATCCTTCTTTTTGTGTTTCTAGGCCTGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTAAT ] consensusID : consensus_14356#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 799 fasta sequence [TGTTGTGAGTCAGGTTGAGACGCTGTCAAGAGATGATCTCTCATCAAGGTTGATGTTAAATGTTAATGTTGCATCAGTTGGATCATTAATGCTACCTGATTCACTCATCACTATAATGGATACAAACGACTATTCCGCTGTTCCTCAGCAGTTAAAGGACCAAGTGAATGAAAGGTACCCAGGTGCAAGGCGTGCAGTACTAAAGACGGGTGGTGATTTCCCCTTCCTGTCACGTCCTGATGAGGTTAATTTGTACCTTCAGCTACATTTGAGACGAGTTGGAGTAGAACCTAGACCAGATCTGGTCCAAGGTTTCACACGTAATGGCAGTGCTGGGAGCTCAAAGGACCAAAAAGATGGTGGAAACAATTTTGACAATCATCCTGGAGATAATGGTGGCCCTGGTTCAGGGGGTCATGATCATGAGACACAGAATTCTGGATCAGAATCACATGATTCTGATGAATCAATACCAACGAGCACAATGCTTGCCAATACCATTCTAGAGCTCGCTTTGTAGAATATCATCGTGGTACGAGTGTCATAGCTTCTTTGGAGTGGGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGAAAACAACTTCTGTATGTTTGTATATTAGCTCTTGTTTCTTTATCAATCCTTCTTTTTGTGTTTCTAGGCCTGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTAATTTTCTTGTAGTTGCACCATAAAAAGTTGCGGACAGTTTCATGATTTCATCCAACTTATTTTTCAAAAAAAGGA] [-] EMBL CB653358 [TGTTGTGAGTCAGGTTGAGACGCTGTCAAGAGATGATCTCTCATCAAGGTTGATGTTAAATGTTAATGTTGCATCAGTTGGATCATTAATGCTACCTGATTCACTCATCACTATAATGGATACAAACGACTATTCCGCTGTTCCTCAGCAGTTAAAGGACCAAGTGAATGAAAGGTACCCAGGTGCAAGGCGTGCAGTACTAAAGACGGGTGGTGATTTCCCCTTCCTGTCACGTCCTGATGAGGTTAATTTGTACCTTCAGCTACATTTGAGACGAGTTGGAGTAGAACCTAGACCAGATCTGGTCCAAGGTTTCACACGTAATGGCAGTGCTGGGAGCTCAAAGGACCAAAAAGATGGTGGAAACAATTTTGACAATCATCCTGGAGATAATGGTGGCCCTGGTTCAGGGGGTCATGATCATGAGACACAGAATTCTGGATCAGAATCACATGATTCTGATGAATCAATACCAACGAGCACAATGCTTGCCAATACCATTCTAGAGCTCGCTTTGTAGAATATCATCGTGGTACGAGTGTCATAGCTTCTTTGGAGTGGGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGAAAACAACTTCTGTATGTTTGTATATTAGCTCTTGTTTCTTTATCAATCCTTCTTTTTGTGTTTCTAGGCCTGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTAATTTTCTTGTAGTTGCACCATAAAAAGTTGCGGACAGTTTCATGATTTCATCCAACTTATTTTT ] [-] EMBL CB653396 [ AGAGATGATCTCTCATCAAGGTTGATGTTAAATGTTAATGTTGCATCAGTTGGATCATTAATGCTACGTGATTCACTCATCACTATAATGGATACAAACGACTATTCCGCTGTTCCTCAGCAGTTAAAGGACCAAGTGAATGAAAGGTACCCAGGTGCAAGGCGTGCAGTACTAAAGACGGGTGGTGATTTCCCCTTCCTGTCACGTCCTGATGAGGTTAATTTGTACCTTCAGCTACATTTGAGACGAGTTGGAGTAGAACCTAGACCAGATCTGGTCCAAGGTTTCACACGTAATGGCAGTGCTGGGAGCTCAAAGGACCAAAAAGATGGTGGAAACAATTTTGACAATCATCCTGGAGATAATGGTGGCCCTGGTTCAGGGGGTCATGATCATGAGACACAGAATTCTGGATCAGAATCACATGATTCTGATGAATCAATACCAACGAGCACAATGCTTGCCAATACCATTCTAGAGCTCGCTTTGTAGAATATCATCGTGGTACGAGTGTCATAGCTTCTTTGGAGTGGGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGAAAACAACTTCTGTATGTTTGTATATTAGCTCTTGTTTCTTTATCAATCCTTCTTTTTGTGTTTCTAGGCCTGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTAATTTTCTTGTAGTTGCACCATAAAAAGTTGGGGACAGTTTCATGATTTCATCCAACTTATTTTTCAAAAAAAGGA] [+] EMBL CA882910 [ TACATTTGAGACGAGTTGGAGTAGAACCTAGACCAGATCTGGTCCAAGGTTTCACACGTAATGGCAGTGCTGGGAGCTCAAAGGACCAAAAAGATGGTGGAAACAATTTTGACAATCATCCTGGAGATAATGGTGGCCCTGGTTCAGGGGGTCATGATCATGAGACACAGAATTCTGGATCAGAATCACATGATTCTGATGAATCAATACCAACGAGTACAATGCTTGCCAATAC ] [+] EMBL CA764665 [ ATCAACAACCAGGAAAACAACTTCTGTATGTTTGTATATTAGCTCTTGTTTCTTTATCAATCCTTCTTTTTGTGTTTCTAGGCCTGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTAATTTTCTTGTAGTTGC ] consensusID : consensus_14356#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 793 fasta sequence [CCCCCCTCCGCTCGCCTCCGCGATTCCCTTCCCATTTCGCCGCCGATGAAGGGCGGCGGGGGCGCGGCGGCGGCGTCGGCGGCGCCGGGGGACTACGTCTACTTCAAGTCCGTCGTC-CCGCTCCACAAGATCTCGATTGGACCGAAATTATGGAGGTACTATGATTTTGGACCAAAGACTGTTCCACCTCTTGTCTGCATCCCAGGAATTGCAGGAACGGCTGATGTGTACTACAAACAGATCATGTCTCTCTCTATGAAGGGTTATCGAGTGATGTCAATTGATGTTCCTCAAGTTTGGAATCACCAGGAATGGATTCATTCATTTGAAAAATTTTTGGACTCCATGAATATCCATCATGTTCATATTTATGGTACATCTCTTGGTGGATTTCTTGCACAAATATTTGCTCAACACCGTCCAAGGAGAGTAAAGTCCTTGGTCCTATCAAATACTTTTCTTGAGACACATAAGTTTGC-TGCTGCTACGCCAT-GGTCTCCTGTTGTTAATTGGACCCCTTCTTTTTTGCTGAAGCGGTACCTATTGACAGGAATCCGAGATGGCCCCCATGTAGAGCTCGCTTTGTAGAATATCATCGTGGTACGAGTGTCATAGCTTCTTTGGAGTGGGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGAAAACAACTTCTGTATGTTTGTATATTAGCTCTTGTTTCTTTATCAATCCTTCTTTTTGTGTTTCTAGGCCTGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTTA] [+] EMBL CB685058 [CCCCCCTCCGCTCGCCTCCGCGATTCCCTTCCCATTTCGCCGCCGATGAAGGGCGGCGGGGGCGCGGCGGCGGCGTCGGCGGCGCCGGGGGACTACGTCTACTTCAAGTCCGTCGTC CCGCTCCACAAGATCTCGATTGGACCGAAATTATGGAGGTACTATGATTTTGGACCAAAGACTGTTCCACCTCTTGTCTGCATCCCAGGAATTGCAGGAACGGCTGATGTGTACTACAAACAGATCATGTCTCTCTCTATGAAGGGTTATCGAGTGATGTCAATTGATGTTCCTCAAGTTTGGAATCACCAGGAATGGATTCATTCATTTGAAAAATTTTTGGACTCCATGAATATCCATCATGTTCATATTTATGGTACATCTCTTGGTGGATTTCTTGCACAAATATTTGCTCAACACCGTCCAAGGAGAGTAAAGTCCTTGGTCCTATCAAATACTTTTCTTGAGACACATAAGTTTGC TGCTGCTACGCCAT GGTCTCCTGTTGTTAATTGGACCCCTTCTTTTTTGCTGAAGCGGTACCTATTGACAGGAATCCGAGATGGCCCCCATGTAGAGCTCGCTTTGTAGAATATCATCGTGGTACGAGTGTCATAGCTTCTTTGGAGTGGGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGAAAACAACTTCTGTATGTTTGTATATTAGCTCTTGTTTCTTTATCAATCCTTCTTTTTGTGTTTCTAGGCCTGTAAATTGAATTTGATCTGCCTGAGACATGAATA ] [+] EMBL C26051 [ ccggcCGTCTCCTCC TCC CCCTCTCCGCTCCACAAGATCTCGATTGGACCGAAATTATGGAGGTACTATGATTTTGGACCAAAGACTGTTCCACCTCTTGTCTGCATCCCAGGAATTGCAGGAACGGCTGATGTGTACTACAAACAGATCATGTCTCTCTCTATGAAGGGTTATCGAGTGATGTCAATTGATGTTCCTCAAGTTTGGAATCACCAGGAATGGATTCATTCATTTGAAAAATTTTTGGACTCCATGAATATCCATCATGTTCATATTTATGGTACATCTCTTGGTGGATTTCTTGCACAAATATTTGCTCAACANCGTCCAAGGAGAGTAAAGTCCTTGGTCCTATCAAATACTTTTCTTGAGACACATAAGTNTGCTTGCTGCTACGGCATGGGTCTNCTGTTGTTAATTGGACC ] [-] EMBL CB685059 [ TC CCGCTCCACAAGATCTCGATTGGGCCGAAATTATGGAGGTACTATGATTTTGGACCAAAGACTGTTCCACCTCTTGTCTGCATCCCAGGAATTGCAGGAACGGCTGATGTGTACTACAAACAGATCATGTCTCTCTTTATGAAGGGTTATCGAGTGATGTCAATTGATGTTCCTCAAGTTTGGAATCACCAGGAATGGATTCATTCATTTGAAAAATTTTTGGACTCCATGAATATCCATCATGTTCATATTTATGGTACATCTCTTGGTGGATTTCTTGCACAAATATTTGCTCAACCCCGTCCAAGGAGAGTAAAGTCCTTGGTCCTATCAAATACTTTTCTTGAGACACATAAGTTTGC TGCTGCTACGCCAT GGTCTCCTGTTGTTAATTGGACCCCTTCTTTTTTGCTGAAGCGGTACCTATTGACAGGAATCCGAGATGGCCCCCATGTAGAGCTCGCTTTGTAGAATATCATCGTGGTACGAGTGTCATAGCTTCTTTGGAGTGGGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGAAAACAACTTCTGTATGTTTGTATATTAGCTCTTGTTTCTTTATCAATCCTTCTTTTTGTGTTTTTAGGCCTGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTTA] consensusID : consensus_14356#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence [AGACAAGGGGTATGGGGGAACCAATTTTGGCAATCATCCTGAAGATAATGGTGGCCCTGGTTCAGGGGGTCATGATCATGAGACACAGAATTCTGGATCAGAATCACATGATTGTGATGAATCAATACCAACGAGCACAATGCTTGCCAATACCATTCTAGGTACGGTTAGCTCAACCCTGCAAGCTTCACTATGTGTGCTCTTGATACATCATTACTATGAGTCTGCTTTGTATATTTCGTCGAGACAGCCATTGGATGTATGAAGTAGGGAATCACCCCTTTTGCCCCCATGTAGAGCTCGCTTTGTAGAATATCATCGTGGTACGAGTGTCATAGCTTCTTTGGAGTGGGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGAAAACAACTTCTGTATGTTAAGAATATTAGCTCTTGTTTCTTTATCAATCCTTCTTTTTGTGTTTCTAGGCCTGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTAATTTTCTTGTAGTTGCCCCATAAAAAAAAAAAAAA] [-] EMBL CA759236 [AGACAAGGGGTATGGGGGAACCAATTTTGGCAATCATCCTGAAGATAATGGTGGCCCTGGTTCAGGGGGTCATGATCATGAGACACAGAATTCTGGATCAGAATCACATGATTGTGATGAATCAATACCAACGAGCACAATGCTTGCCAATACCATTCTAGGTACGGTTAGCTCAACCCTGCAAGCTTCACTATGTGTGCTCTTGATACATCATTACTATGAGTCTGCTTTGTATATTTCGTCGAGACAGCCATTGGATGTATGAAGTAGGGAATCACCCCTTTTGCCCCCATGTAGAGCTCGCTTTGTAGAATATCATCGTGGTACGAGTGTCATAGCTTCTTTGGAGTGGGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGAAAACAACTTCTGTATGTTAAGAATATTAGCTCTTGTTTCTTTATCAATCCTTCTTTTTGTGTTTCTAGGCCTGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTAATTTTCTTGTAGTTGCCCCATAAAAAAAAAAAAAA] consensusID : consensus_14356#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence [ACCAAAGACTGTTCCACCTCTTGTCTGCATCCCAGGAATTGCAGGAACGCGCTGATGTGTACTACACACAGATCATGTCTCTCTCTATGAAGGTTCCTAGTATCTGCCTTGAGACTAATTTTTTCATACCTGAACTGGGTTTGGGTTTCAGGTTCATGCATACCTACCACAATACCGAAAAGTTTATTATTTGCATTTGTAGGTTGTAGGGCCAAGGTTTTTTTAAAAAAAAACTACAAAAAGCATGGTCAAGGGTCTGTCCTGCGTCCTTGGCTGTTCTCAATCATCTACCAAACAAAAATTCGCTCTCACACAACAGTTTATCTTGACTCTACACCTGAGATCATGAGAC] [+] EMBL D42452 [ACCAAAGACTGTTCCACCTCTTGTCTGCATCCCAGGAATTGCAGGAACGCGCTGATGTGTACTACACACAGATCATGTCTCTCTCTATGAAGGTTCCTAGTATCTGCCTTGAGACTAATTTTTTCATACCTGAACTGGGTTTGGGTTTCAGGTTCATGCATACCTACCACAATACCGAAAAGTTTATTATTTGCATTTGTAGGTTGTAGGGCCAAGGTTTTTTTAAAAAAAAACTACAAAAAGCATGGTCAAGGGTCTGTCCTGCGTCCTTGGCTGTTCTCAATCATCTACCAAACAAAAATTCGCTCTCACACAACAGTTTATCTTGACTCTACACCTGAGATCATGAGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14356#1 ------------------------------------------------------------ consensus_14356#3 ------------------------------------------------------------ consensus_14356#0 CTCCTCCTTCCCCTCTCCGCTCGCCTCCGCGATTCCCTTCCCATTTCGCCGCCGATGAAG 60 consensus_14356#2 ------------------------------------------------------------ consensus_14356#4 ------------------------------------------------------------ consensus_14356#1 ------------------------------------------------------------ consensus_14356#3 ------------------------------------------------------------ consensus_14356#0 GGCGGCGGGGGCGCGGCGGCGGCGTCGGCGGCGCCGGGGGACTACGTCTACTTCAAGTCC 120 consensus_14356#2 ------------------------------------------------------------ consensus_14356#4 ------------------------------------------------------------ consensus_14356#1 ------------------------------------------------------------ consensus_14356#3 ------------------------------------------------------------ consensus_14356#0 GTCGTCCCGCTCCACAAGATCTCGATTGGACCGAAATTATGGAGGTACTATGATTTTGGA 180 consensus_14356#2 ------------------------------------------------------------ consensus_14356#4 ------------------------------------------------------------ consensus_14356#1 ------------------------------------------------------------ consensus_14356#3 ------------------------------------------------------------ consensus_14356#0 CCAAAGACTGTTCCACCTCTTGTCTGCATCCCAGGAATTGCAGGAACGGCTGATGTGTAC 240 consensus_14356#2 ------------------------------------------------------------ consensus_14356#4 ------------------------------------------------------------ consensus_14356#1 ------------------------------------------------------------ consensus_14356#3 ------------------------------------------------------------ consensus_14356#0 TACAAACAGATCATGTCTCTCTCTATGAAGGGTTATCGAGTGATGTCAATTGATGTTCCT 300 consensus_14356#2 ------------------------------------------------------------ consensus_14356#4 ------------------------------------------------------------ consensus_14356#1 ------------------------------------------------------------ consensus_14356#3 ------------------------------------------------------------ consensus_14356#0 CAAGTTTGGAATCACCAGGAATGGATTCATTCATTTGAAAAATTTTTGGACTCCATGAAT 360 consensus_14356#2 ------------------------------------------------------------ consensus_14356#4 ------------------------------------------------------------ consensus_14356#1 ------------------------------------------------------------ consensus_14356#3 ------------------------------------------------------------ consensus_14356#0 ATCCATCATGTTCATATTTATGGTACATCTCTTGGTGGATTTCTTGCACAAATATTTGCT 420 consensus_14356#2 ------------------------------------------------------------ consensus_14356#4 ------------------------------------------------------------ consensus_14356#1 ------------------------------------------------------------ consensus_14356#3 ------------------------------------------------------------ consensus_14356#0 CAACACCGTCCAAGGAGAGTAAAGTCCTTGGTCCTATCAAATACTTTTCTTGAGACACAT 480 consensus_14356#2 ------------------------------------------------------------ consensus_14356#4 ------------------------------------------------------------ consensus_14356#1 ------------------------------------------------------------ consensus_14356#3 ------------------------------------------------------------ consensus_14356#0 AAGTTTGCTGCTGCTACGCCATGGTCTCCTGTTGTTAATTGGACCCCTTCTTTTTTGCTG 540 consensus_14356#2 ------------------------------------------------------------ consensus_14356#4 ------------------------------------------------------------ consensus_14356#1 ------------------------------------------------------------ consensus_14356#3 ------------------------------------------------------------ consensus_14356#0 AAGCGGTACCTATTGACAGGAATCCGAGATGGCCCCCATGAACCGTTTATTGCAGACTCA 600 consensus_14356#2 ------------------------------------------CCCCCCTCCGCTCGCCTC 18 consensus_14356#4 ------------------------------------------------------------ consensus_14356#1 --------TGTTGTGAGTCAGGTTGAGACGCTGTCAAGAGATGATCTCTCATCAAGGTTG 52 consensus_14356#3 ------------------------------------------------------------ consensus_14356#0 GTGGATTTTGTTGTGAGTCAGGTTGAGACGCTGTCAAGAGATGATCTCTCATCAAGGTTG 660 consensus_14356#2 CGCGATTCCCTTCCCATTTCGCCGCCGATGAAGGGCGGCGGGGGCGCGGCGGCGGCGTCG 78 consensus_14356#4 ------------------------------------------------------------ consensus_14356#1 ATGTTAAATGTTAATGTTGCATCAGTTGGATCATTAATGCTACCTGATTCACTCATCACT 112 consensus_14356#3 ------------------------------------------------------------ consensus_14356#0 ATGTTAAATGTTAATGTTGCATCAGTTGGATCATTAATGCTACCTGATTCACTCATCACT 720 consensus_14356#2 GCGGCGCCGGGGGACTACGTCTACTTCAAGTCCGTCGTCCCGCTCCACAAGATCTCGATT 138 consensus_14356#4 ------------------------------------------------------------ consensus_14356#1 ATAATGGATACAAACGACTATTCCGCTGTTCC-TCAGCAGTTAAAGGACCAAGTGAATGA 171 consensus_14356#3 ------------------------------------------------------------ consensus_14356#0 ATAATGGATACAAACGACTATTCCGCTGTTCC-TCAGCAGTTAAAGGACCAAGTGAATGA 779 consensus_14356#2 GGACCGAAATTATGGAGGTACTATGATTTTGGACCAAAGACTGTTCCACCTCTTGTCTGC 198 consensus_14356#4 --------------------------------ACCAAAGACTGTTCCACCTCTTGTCTGC 28 consensus_14356#1 AAGGTACCCAGGTGCAAGGCGTGC-AGTACTAAAGACGGGTGGTGATTTCCCCTTCCTGT 230 consensus_14356#3 ------------------------------AGACAAGGGGTATGGGGGAACCAATTTTGG 30 consensus_14356#0 AAGGTACCCAGGTGCAAGGCGTGC-AGTACTAAAGACGGGTGGTGATTTCCCCTTCCTGT 838 consensus_14356#2 ATCCCAGGAATTGCAGGAACGGCT-GATGTGTACTACAAACAGATCATGTCTCTCTCTAT 257 consensus_14356#4 ATCCCAGGAATTGCAGGAACGCGCTGATGTGTACTACACACAGATCATGTCTCTCTCTAT 88 * * * * consensus_14356#1 CACG--TCCTGATGAG-GTTAATTTGTACCTTCAGCTACATTTGAGACGAGTTGGAGTAG 287 consensus_14356#3 CA-A--TCATCCTGAA-GATAATG-GTGGCCCTGGTTCAGGGGGTCATGATCATGAG--- 82 consensus_14356#0 CACG--TCCTGATGAG-GTTAATTTGTACCTTCAGCTACATTTGAGACGAGTTGGAGTAG 895 consensus_14356#2 GAAG--GGTTATCGAGTGATGTCAATTGATGTTCCTCAAGTTTGGAATCACCAGGAATGG 315 consensus_14356#4 GAAGGTTCCTAGTATCTGCCTTGAGACTAATTTTTTCATACCTGAACTGGGTTTGGGTTT 148 * * * * * consensus_14356#1 A-ACCTAGACCAGATCTGGTCCAAGGTTTCACA--CGT--AATGG--CAGTGCTGG-GAG 339 consensus_14356#3 --ACACAGAAT---TCTGGATCAGAATCACATGATTGT--GATGAATCAATACCAACGAG 135 consensus_14356#0 A-ACCTAGACCAGATCTGGTCCAAGGTTTCACA--CGT--AATGG--CAGTGCTGG-GAG 947 consensus_14356#2 ATTCATTCATTTGAAAAATTTTTGGACTCCATGAATATCCATCATGTTCATATTTA-TGG 374 consensus_14356#4 CAGGTTCATGCATACCTACCACAATACCGAAAA---GTTTATTAT--TTGCATTTGTAGG 203 * * * consensus_14356#1 CTCAAAGG--ACCAAAAAGATGGTGGAAACAATTTTGACAATCATCCTGGAGATAATGGT 397 consensus_14356#3 CACAATGCTTGCCAATACCATTCTAGGTACGGTTAGCTCAACCCTGCAAGCTTCACTATG 195 consensus_14356#0 CTCAAAGG--ACCAAAAAGATGGTGGAAACAATTTTGACAATCATCCTGGAGATAATGGT 1005 consensus_14356#2 TACATCTCTTGGTGGATTTCTTGCACAAATATTTGCTCAACACCGTCCAAGGAGAGTAAA 434 consensus_14356#4 TTGTAGGG--CCAAGGTTTTTTTAAAAAAAAACTACAAAAAGCATGGTCAAGGGTCTGTC 261 * * * * * * consensus_14356#1 GGCCCTGGTTCAGG-GGGTCATGATCATGAGACACAGAATTCTGGATCAGAATCACATGA 456 consensus_14356#3 TGTGCT--CTTGAT-ACATCATTACTATGAGTCTGCTTTGTATATTTCGTCGAGACAGCC 252 consensus_14356#0 GGCCCTGGTTCAGG-GGGTCATGATCATGAGACACAGAATTCTGGATCAGAATCACATGA 1064 consensus_14356#2 GTCCTTGGTCCTATCAAATACTTTTCTTGAGACACATAAGTTTGCTGCTGCTACGCCATG 494 consensus_14356#4 CTGCGTCCTTGGCTGTTCTCAATCATCTACCAAACAAAAATTCGCTCTCACACAACAGT- 320 * * * * * consensus_14356#1 TTCTGATGAATCAATACCAACGAGCACAATGCTTGCCAATA------------------- 497 consensus_14356#3 ATTGGATGTATGAA-GTAGGGAATCACCCCTTTTGCC----------------------- 288 consensus_14356#0 TTCTGATGAATCAATACCAACGAGCACAATGCTTGCCAATACCATTCTAGGTACGGTTAG 1124 consensus_14356#2 GTCTCCTGTTGTTA-ATTGGACCCCTTCTTTTTTGCTGAAGCG----------------- 536 consensus_14356#4 TTATCTTGACTCTACACCTGAGATCATGAGAC---------------------------- 352 * ** * * consensus_14356#1 ------------------------------------------------------------ consensus_14356#3 ------------------------------------------------------------ consensus_14356#0 CTCAACCCTGCAAGCTTCACTATGTGTGCTCTTGATACATCATTACTATGAGTCTGCTTT 1184 consensus_14356#2 ------------------------------------------------------------ consensus_14356#4 ------------------------------------------------------------ consensus_14356#1 ---------------------------------------------------------CCA 500 consensus_14356#3 ---------------------------------------------------------CCC 291 consensus_14356#0 GTATATTTCGTCGAGACAGCCATTGGATGTATGAAGTAGGGAATCACCCCTTTTGCCCCC 1244 consensus_14356#2 ----------------------------GTACCTATTGACAGGAATCCGAGATGGCCCCC 568 consensus_14356#4 ------------------------------------------------------------ consensus_14356#1 TTCTAGAGCTCGCTTTGTAGAATATCATCGTGGTACGAGTGTCATAGCTTCTTTGGAGTG 560 consensus_14356#3 ATGTAGAGCTCGCTTTGTAGAATATCATCGTGGTACGAGTGTCATAGCTTCTTTGGAGTG 351 consensus_14356#0 ATGTAGAGCTCGCTTTGTAGAATATCATCGTGGTACGAGTGTCATAGCTTCTTTGGAGTG 1304 consensus_14356#2 ATGTAGAGCTCGCTTTGTAGAATATCATCGTGGTACGAGTGTCATAGCTTCTTTGGAGTG 628 consensus_14356#4 ------------------------------------------------------------ consensus_14356#1 GGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGAAAACAACTTCT 620 consensus_14356#3 GGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGAAAACAACTTCT 411 consensus_14356#0 GGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGAAAACAACTTCT 1364 consensus_14356#2 GGTTCTTACTTCGTTGCTGCCAACGGGAAAGGCACATCAACAACCAGGAAAACAACTTCT 688 consensus_14356#4 ------------------------------------------------------------ consensus_14356#1 GTATGTTT-GTATATTAGCTCTTGTTTCTTTATCAATCCTTCTTTTTGTGTTTCTAGGCC 679 consensus_14356#3 GTATGTTAAGAATATTAGCTCTTGTTTCTTTATCAATCCTTCTTTTTGTGTTTCTAGGCC 471 consensus_14356#0 GTATGTTT-GTATATTAGCTCTTGTTTCTTTATCAATCCTTCTTTTTGTGTTTCTAGGCC 1423 consensus_14356#2 GTATGTTT-GTATATTAGCTCTTGTTTCTTTATCAATCCTTCTTTTTGTGTTTCTAGGCC 747 consensus_14356#4 ------------------------------------------------------------ consensus_14356#1 TGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTAATTTTCTTGTAGTTG 739 consensus_14356#3 TGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTAATTTTCTTGTAGTTG 531 consensus_14356#0 TGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTAATTTTCTTGTAGTTG 1483 consensus_14356#2 TGTAAATTGAATTTGATCTGCCTGAGACATGAATATGATTGCTTTA-------------- 793 consensus_14356#4 ------------------------------------------------------------ consensus_14356#1 CACCATAAAAAGTTGCGGACAGTTTCATGATTTCATCCAACTTATTTTTCAAAAAAAGGA 799 consensus_14356#3 CCCCATAAAAAAAAAAAAAA---------------------------------------- 551 consensus_14356#0 CACCATAAAAAGTTGCGTACAAAAAAAAAA------------------------------ 1513 consensus_14356#2 ------------------------------------------------------------ consensus_14356#4 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||