These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14360#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1440 fasta sequence [TGGACTGAAGGAGTAGAAACTCTCTCCAGTCCGTCTGCCTCTCTCACCACCACCACCGTGCGCTGCTCCAAGGGGGAGATGGCGGTGGTGAAGTGCATCAGGGTCCACGAGCTGGGCGGGCCTGAGGTGTTGAGATGGGAGCAAGTGGAGGTCGGGGAGCCCAAGGAGGGCGAGATCCGGATCAAGAACACCGCCATCGGCGTCAATTTCATCGACGTCTACTACCGCCAGGGGGTCTACTCCGCTCCACTGCCCTTCGTCCCTGGGAGGGAAGCCGTTGGAGTGGTGACCGCTGTAGGTCCTGGCCTGACTGGCAGAAAGGTT-GGGGACGTCGTCGCCTATGCCGGCAATCCCATGGGCTCTTATGCTCAAGAGCAGATTATTCCCGCCTCCGTCGCTGTTCCCCTTCCTCCTTCCATCGACCACAACACTGCTGCCGCTATTATGCTCAAGGGGATGACTGCTCACGTTCTACTTCGCCGTGTTTACAAGGTCCAGAGTGGTG-ATTGTG-TTCTGGTCCACGCTGCTGCCGGT-GGGG---TT-GGATCAC-TCCTTTGTCAATGGGCAAATGCCCTTGGTGCCACTGTCATCGGGACTGTTTCAAATGAGGAGAAGGCTGCACAGGCAGCTGAAGATGGATGCCACCATGTCATCATTTACACAAAGGAAGATGTTGTCACAAGAGTCAAGGAGTTCACAGCTGGGAAAGGTGTCAATGTGGTATATGATTCTGTTGGCAAGGATACATACAAGGGTTCGGTGGAATGCTTGG-CGTGGCGTGGTATGCTGGTGTCGTTTGGGCAGTCGTCAGGTAGGCCTGATCCCATTCCGCTGAGCGATCTGGCAAGCAAGTCGCTGTTGGTAACAAGGCCCAGCCTGATGCATTACACTGCTACCCGCGACGAGTTGCTGGAGTCGGCCGGTGAGGTGTTTGCCAATGTAGGAAGCGGGGTGTTGCGCATCCGTGTGAACCACACATA-TCCATTGTCTCAAGCTGCTCGCGCTCATGCGGATCT-CCAGGCCAGGAAGACGA-CCGGATCCATCCTGCTCATCCCAGATGATGCATGATACTCCAGTACTAGTGTAGGAGTAGTAGTTATTCCAGTACAAAAAGTGTCTCTTCTCCAATGCCGCTGCTGTTTCTTACTTTAGTACTCCTGTATTTTTCATGCATTATCAATCAGGTTCAGGTTTGGTTGCCAGTTGATGTGTGTCTGCGTGCGTTTCGTTGTGGTTTTCATGTTGACAGGACAGGACGTATACTATACATAAATAAAGGGCAGCATCTTTGAAATAAAGATCACTTATACTAAAAAAAATTTGAGTTATTTATTGCTCAACTGGCAATGGGTGTTGCTTGAATAACCTTGGTTCTGTTCCTGCTTACTGTATCTCAACTGGCAAAGAGCAGGTAATATAAGGTTTTTTATTTTAAAAAAAAAA] [+] EMBL CF277449 [TGGACTGAAGGAGTAGAAACT TTTCAAGTCCGTCTGCCTCTCTCACCACCACCACCGTGCGCTGCTCCAAGGGGGAGATGGCGGTGGTGAAGTGCATCAGGGTCCACGAGCTGGGCGGGCCTGAGGTGTTGAGATGGGAGCAAGTGGAGGTCGGGGAGCCCAAGGAGGGCGAGATCCGGATCAAGAACACCGCCATCGGCGTCAATTTCATCGACGTTTATTATCGCCAGGGGGTCTACTCCGCTCCACTGCCCTTCGTCCCTGGGAGGGAAGCCGTTGGAGTGGTGACCGCTGTAGGTCCTGGCCTGACTGGCAGAAAGGTT GGGGACGTCGTCGCCTATGCCGGCAATCCCATGGGCTCTTATGCTCAAGAGCAGATTATTCCCGCCTCCGTCGCTGTTCCCCTTCCTCCTTCCATCGACCACAACACTGCTGCCGCTATTATGCTCAAGGGGATGACTGCTCACGTTCTACTTCGCCGTGTTTACAAGGTCCAGAGTGGTG ATTGTG TTCTGGTCCACGCTGCTGCCGGTGGGGG TTGGGATCAC T CTTTGTCAATGGGCAAATGCCCTTGGTGCCACTGTCATCGGGACT ] [+] EMBL CF277268 [TGGACTGAAGGAGTAGAAACTCTCTCCAGTCCGTCTGCCTCTCTCACCACCACCACCGTGCGCTGCTCCAAGGGGGAGATGGCGGTGGTGAAGTGCATCAGGGTCCACGAGCTGGGCGGGCCTGAGGTGTTGAGATGGGAGCAAGTGGAGGTCGGGGAGCCCAAGGAGGGCGAGATCCGGATCAAGAACACCGCCATCGGCGTCAATTTCATCGACGTCTACTACCGCCAGGGGGTCTACTCCGCTCCACTGCCCTTCGTCCCTGGGAGGGAAGCCGTTGGAGTGGTGACCGCTGTAGGTCCTGGCCTGACTGGCAGAAAGGTTGGGGGACGTCGTCGCCTATGCCGGCAATCCCATGGGCTCTTATGCTCAAGAGCAGATTATTCCCGCCTCCGTCGCTGTTCCCCTTCCTCCTTCCATCGACCACAACACTGCTGCCGCTATTATGCTCAAGGGGATGACTGCTCACGTTCTACTTCGCCGTGTTTACAAGGTCCAGAGTGGTGAATTGTGTTTCTGGTCCACGCTGCTGCCGGT GGGGGGTTT GGATCACTTCCTTTGTCAATGGGCAAATGCCCTTGGTGCCACTGTCATCGGGg ] [+] EMBL CF276356 [ gcctcCTCTCTCCAGTCCGTCTGCCTCTCTCACCACCACCACCGTGCGCTGCTCCAAGGGGGAGATGGCGGTGGTGAAGTGCATCAGGGTCCACGAGCTGGGCGGGCCTGAGGTGTTGAGATGGGAGCAAGTGGAGGTCGAGGAGCCCAAGGAGGGCGAGATCCGGATCAAGAACACCGCCATCGGCGTCAATTT ATCGACGTCTACTACCGCCAGGGGGTCTACTCCGCTCCACTGCCCTTCGTCCCTGGGAGGGAAGCCGTTGGAGTGGTGACCGCTGTAGGTCCTGGCCTGACTGGCAGAAAGGTT GGGGACGTCGTCGCCTATGCCGGCAATCCCATGGGCTCTTATGCTCAAGAGCAGATTATTCCCGCCTCCGTCGCTGTTCCCCTTCCTCCTTCCATCGACCACAACACTGCTGCCGCTATTATGCTCAAGGGGATGACTGCTCACGTTCTACTTCGCCGTGTTTACAAGGTCCAGAGTGGTG ATTGTG TTCTGGTCCAC ] [+] EMBL AK061143 [ TGCCTCTCTCACCACCACCACCGTGCGCTGCTCCAAGGGGGAGATGGCGGTGGTGAAGTGCATCAGGGTCCACGAGCTGGGCGGGCCTGAGGTGTTGAGATGGGAGCAAGTGGAGGTCGGGGAGCCCAAGGAGGGCGAGATCCGGATCAAGAACACCGCCATCGGCGTCAATTTCATCGACGTCTACTACCGCCAGGGGGTCTACTCCGCTCCACTGCCCTTCGTCCCTGGGAGGGAAGCCGTTGGAGTGGTGACCGCTGTAGGTCCTGGCCTGACTGGCAGAAAGGTT GGGGACGTCGTCGCCTATGCCGGCAATCCCATGGGCTCTTATGCTCAAGAGCAGATTATTCCCGCCTCCGTCGCTGTTCCCCTTCCTCCTTCCATCGACCACAACACTGCTGCCGCTATTATGCTCAAGGGGATGACTGCTCACGTTCTACTTCGCCGTGTTTACAAGGTCCAGAGTGGTG ATTGTG TTCTGGTCCACGCTGCTGCCGGT GGGG TT GGATCAC TCCTTTGTCAATGGGCAAATGCCCTTGGTGCCACTGTCATCGGGACTGTTTCAAATGAGGAGAAGGCTGCACAGGCAGCTGAAGATGGATGCCACCATGTCATCATTTACACAAAGGAAGATGTTGTCACAAGAGTCAAGGAGTTCACAGCTGGGAAAGGTGTCAATGTGGTATATGATTCTGTTGGCAAGGATACATACAAGGGTTCGGTGGAATGCTTGG CGTGGCGTGGTATGCTGGTGTCGTTTGGGCAGTCGTCAGGTAGGCCTGATCCCATTCCGCTGAGCGATCTGGCAAGCAAGTCGCTGTTGGTAACAAGGCCCAGCCTGATGCATTACACTGCTACCCGCGACGAGTTGCTGGAGTCGGCCGGTGAGGTGTTTGCCAATGTAGGAAGCGGGGTGTTGCGCATCCGTGTGAACCACACATA TCCATTGTCTCAAGCTGCTCGCGCTCATGCGGATCT CCAGGCCAGGAAGACGA CCGGATCCATCCTGCTCATCCCAGATGATGCATGATACTCCAGTACTAGTGTAGGAGTAGTAGTTATTCCAGTACAAAAAGTGTCTCTTCTCCAATGCCGCTGCTGTTTCTTACTTTAGTACTCCTGTATTTTTCATGCATTATCAATCAGGTTCAGG ] [+] EMBL AK069374 [ CTCTCACCACCACCACCGTGCGCTGCTCCAAGGGGGAGATGGCGGTGGTGAAGTGCATCAGGGTCCACGAGCTGGGCGGGCCTGAGGTGTTGAGATGGGAGCAAGTGGAGGTCGGGGAGCCCAAGGAGGGCGAGATCCGGATCAAGAACACCGCCATCGGCGTCAATTTCATCGACGTCTACTACCGCCAGGGGGTCTACTCCGCTCCACTGCCCTTCGTCCCTGGGAGGGAAGCCGTTGGAGTGGTGACCGCTGTAGGTCCTGGCCTGACTGGCAGAAAGGTT GGGGACGTCGTCGCCTATGCCGGCAATCCCATGGGCTCTTATGCTCAAGAGCAGATTATTCCCGCCTCCGTCGCTGTTCCCCTTCCTCCTTCCATCGACCACAACACTGCTGCCGCTATTATGCTCAAGGGGATGACTGCTCACGTTCTACTTCGCCGTGTTTACAAGGTCCAGAGTGGTG ATTGTG TTCTGGTCCACGCTGCTGCCGGT GGGG TT GGATCAC TCCTTTGTCAATGGGCAAATGCCCTTGGTGCCACTGTCATCGGGACTGTTTCAAATGAGGAGAAGGCTGCACAGGCAGCTGAAGATGGATGCCACCATGTCATCATTTACACAAAGGAAGATGTTGTCACAAGAGTCAAGGAGTTCACAGCTGGGAAAGGTGTCAATGTGGTATATGATTCTGTTGGCAAGGATACATACAAGGGTTCGGTGGAATGCTTGG CGTGGCGTGGTATGCTGGTGTCGTTTGGGCAGTCGTCAGGTAGGCCTGATCCCATTCCGCTGAGCGATCTGGCAAGCAAGTCGCTGTTGGTAACAAGGCCCAGCCTGATGCATTACGCTGCTACCCGCGACGAGTTGCTGGAGTCGGCCGGTGAGGTGTTTGCCAATGTAGGAAGCGGGGTGTTGCGCATCCGTGTGAACCACACATA TCCATTGTCTCAAGCTGCTCGCGCTCATGCGGATCT CCAGGCCAGGAAGACGA CCGGATCCATCCTGCTCATCCCAGATGATGCATGATACTCCAGTACTAGTGTAGGAGTAGTAGTTATTCCAGTACAAAAAGTGTCTCTTCTCCAATGCCGCTGCTGTTTCTTACTTTAGTACTCCTGTATTTTTCATGCATTATCAATCAGGTTCAGGTTTGGTTGCCAGTTGATGTGTGTCTGCGTGCGTTTCGTTGTGGTTTTCATGTTGACAGGACAGGACGTATACTATACATAAATAAAGGGCAGCATCTTTGAAATAAAGATCAC ] [+] EMBL BE230293 [ GACTGGCAGAAAGGTT GGGGACGTCGTCGCCTATGCCGGCAATCCCATGGGCTCTTATGCTCAAGAGCAGATTATTCCCGCCTCCGTCGCTGTTCCCCTTCCTCCTTCCATCGACCACAACACTGCTGCCGCTATTATGCTCAAGGGGATGACTGCTCACGTTCTACTTCGCCGTGTTTACAAGGTCCAGAGTGGTG ATTGTG TTCTGGTCCACGCTGCTGCCGGT GGGG TT GGATCAC TCCTTTGTCAATGGGCAAATGCCCTTGGTGCCACTGTCATCGGGACTGTTTCAAATGAGGAGAAGGCTGCACAGGCAGCTGAAGATGGATGCCACCATGTCATCATTTACACAAAGGAAGATGTTGTCACAAGAGTCAAGGAGTTCACAGCTGGGAAAGGTGTCAATGTGGTATATGATTCTGTTGGCAAGGATACATACAAGGGTTCGGTGGAATGCTTGGCCGTGGCGTGGTATGCTGGTGTCGTTT ] [-] EMBL CF279092 [ TCACAGCTGGGAAAGGTGTCAATGTGGTATATGATTCTGTTGGCAAGGATACATACAAGGGTTCGGTGGAATGCTTGG CGTGGCGTGGTATGCTGGTGTCGTTTGGGCAGTCGTCAGGTAGGCCTGATCCCATTCCGCTGAGCGATCTGGCAAGCAAGTCGCTGTTGGTAACAAGGCCCAGCCTGATGCATTACACTGCTACCCGCGACGAGTTGCTGGAGTCGGCCGGTGAGGTGTTTGCCAATGTAGGAAGCGGGGTGTTGCGCATCCGTGTGAACCACACATANTCCATTGTCTCAAGCTGCTCGCGCTCATGCGGATCT CCAGGCCAGGAAGACGA CCGGATCCATCCTGCTCACCCCAGATGATGCATGATACTCCAGTACTAGTGTAGGAGTAGTAGTTATTCCAGTACAAAAAGTGTCTCTTCTCCAATGCCGCTGCTGTTTCTTACTTTAGTACTCCTGTATTTTTCATGCATTATCAATCAGGTTCAGGTTTGGTTGCCAGTTGATGTGTGTCTGCGTGCGTTTCGTTGTGGTTTTCATGTTGACAGGACAGGACGTATACTATACATAAATAAAGGGCAGCATCTTTGAAATAAAaaa ] [-] EMBL CF276357 [ TCAATGTGGTATATGATTCTGTTGGCAAGGATACATACAAGGGTTCGGTGGAATGCTTGG CGTGGCGTGGTATGCTGGTGTCGTTTGGGCAGTCGTCAGGTAGGCCTGATCCCATTCCGCTGAGCGATCTGGCAAGCAAGTCGCTGTTGGTAACAAGGCCCAGCCTGATGCATTACACTGCTACCCGCGACGAGTTGCTGGAGTCGGCCGGTGAGGTGTTTGCCAATGTAGGAAGCGGGGTGTTGCGCATCCGTGTGAACCACACATA TCCATTGTCTCAAGCTGCTCGCGCTCATGCGGATCT CCAGGCCAGGAAGACGA CCGGATCCATCCTGCTCATCCCAGATGATGCATGATACTCCAGTACTAGTGTAGGAGTAGTAGTTATTCCAGTACAAAAAGTGTCTCTTCTCCAATGCCGCTGCTGTTTCTTACTTTAGTACTCCTGTATTTTTCATGCATTATCAATCAGGTTCAGGTTTGGTTGCCAGTTGATGTGTGTCTGCGTGCGTTTCGTTGTGGTTTTCATGTTGACAGGACAGGACGTATACTATACATAAATAAAGGGCAGCATCTTTGAAATAAAaaaa ] [-] EMBL CF277269 [ GCTGTTGGTAACAAGGCCCAGCCTGATGCATTACACTGCTACCCGCGACGAGTTGCTGGAGTCGGCCGGTGAGGTGTTTGCCAATGTAGGAAGCGGGGTGTTGCGCATCCGTGTGAACCACACATA TCCATTGTCTCAAGCTGCTCGCGCTCATGCGGATCT CCAGGCTAGGAAGACGA CCGGATCCATCCTGCTCATCCCAGATGATGCATGATACTCCAGTACTAGTGTAGGAGTAGTAGTTATTCCAGTACAAAAAGTGT TATTCTCCAATGCCGCTGCTGTTTCTTACTTTAGTACTCCTGTATTTTTCATGCATTATCAATCAGGTTCAGGTTTGGTTGCCAGTTGATGTGTGTCTGCGTGCGTTTCGTTGTGGTTTTCATGTTGACAGGACAGGACGTATACTATACATAAATAAAGGGCAGCATCTTTGAAATAAAaaaaa ] [+] EMBL CA753347 [ CAGCCTGATGCATTACACTGCTACCCGCGACGAGTTGCTGGAGTCGGCCGGTGAGGTGTTTGCCAATGTAGGAAGCGGGGTGTTGCGCATCCGTGTGAACCACACATA TCCATTGTCTCAAGCTGCTCGCGCTCATGCGGATCT CCAGGCCAGGAAGACGA CCGGATCCATCCTGCTCATCCCAGATGATGCATGATACTCCAGTACTAGTGTAGGAGTAGTAGTTATTCCAGTACAAAAAGTGTCTCTTCTCCAATGCCGCTGCTGTTTCTTACTTTAGTACTCCTGTATTTTTCATGCATTATCAATCAGGTTCAGGTTTGGTTGCCAGTTGATGTGTGTCTGCGTGCGTTTCGTTGTGGTTTTCATGTTGACAGGACAGGACGTATACTATACATAAATAAAGGGCAGCATCTTTGAAATAAAGATCACTTATACTAAAAAAAA ] [-] EMBL CF277448 [ CAAGCTGCTCGCGCTCATGCGGATCTCCCAGGCCAGGAAGACGACCCGGATCCATCCTGCTCATCCCAGATGATGCATGATACTCCAGTACTAGTGTAGGAGTAGTAGTTATTCCAGTACAAAAAGTGTCTCTTCTCCAATGCCGCTGCTGTTTCTTACTTTAGTACTCCTGTATTTTTCATGCATTATCAATCAGGTTCAGGTTTGGTTGCCAGTTGATGTGTGTCTGCGTGCGTTTCGTTGTGGTTTTCATGTTGACAGGACAGGACGTATACTATACATAAATAAAGGGCAGCATCTTTGAAATAAAGATCACTTATACTATTAGCGATTTGAGTTATTTATTGCTCAACTGGCAATGGGTGTTGCTTGAATAACCTTGGTTCTGTTCCTGCTTACTGTATCTCAACTGGCAAAGAGCAGGTAATATAAGGTTTTTTATTTTAAAAAAAAAA] consensusID : consensus_14360#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 702 fasta sequence [GGGGCCCCTTAAGGTGGTGAAGTGCATCAGGGTCCACGAGCTGGGCGGGCCTGAGGTGTTGAGATGGGAGCAAGTGCCCGTCGGGGAGCCCAAGGAGGGCGAGATCCGGATCAAGAACACCGCCATCGGCGTCAATTTCATCGACGTCTACTACCGCCAGGGGGTCTACTCCGCTCCACTGCCCTTCGTCCCTGGGAGGGAAGCCGTTGGAGTGGTGACCGCTGTAGGTCCTGGCCTGACTGGCAGAAAGGTTGGGGACGTCGTCGCCTATGCCGGCAATCCCATGGGCTCTTATGCTCAAGAGCAGATTATTCCCGCCTCCGTCGCTGTTCCCCTTCCTCCTTCCATCGACCACAACACTGCTGCCGCTATTATGCTCAAGGGGATGACTGCTCACGTTCTACTTCGCCGTGTTTACAAGGTCCAGAGTGGTGATTGTGTTCTGGTCCACGCTGCTGCCGGTGGGGTTGGATCACTCCTTTGTCAATGGGCAAATGCCCTTGGTGCCACTGTCATCGGGACTGTTTCAAATGAGGAGAAGGCTGCACAGGCAGCTGAAGATGGATGCCACCATGTCATCATTTACACAAAGGAAGATGTTGTCACAAGAGTCAAGGAGTTCACAGCTGGGAAAGGTGTCAATGTGGTATATGATTCTGTTGGCAAGGATACATACAAGGTACTGTACCGTTGCATCTTGCA] [+] EMBL CB684638 [GGGGCCCCTTAAGGTGGTGAAGTGCATCAGGGTCCACGAGCTGGGCGGGCCTGAGGTGTTGAGATGGGAGCAAGTGCCCGTCGGGGAGCCCAAGGAGGGCGAGATCCGGATCAAGAACACCGCCATCGGCGTCAATTTCATCGACGTCTACTACCGCCAGGGGGTCTACTCCGCTCCACTGCCCTTCGTCCCTGGGAGGGAAGCCGTTGGAGTGGTGACCGCTGTAGGTCCTGGCCTGACTGGCAGAAAGGTTGGGGACGTCGTCGCCTATGCCGGCAATCCCATGGGCTCTTATGCTCAAGAGCAGATTATTCCCGCCTCCGTCGCTGTTCCCCTTCCTCCTTCCATCGACCACAACACTGCTGCCGCTATTATGCTCAAGGGGATGACTGCTCACGTTCTACTTCGCCGTGTTTACAAGGTCCAGAGTGGTGATTGTGTTCTGGTCCACGCTGCTGCCGGTGGGGTTGGATCACTCCTTTGTCAATGGGCAAATGCCCTTGGTGCCACTGTCATCGGGACTGTTTCAAATGAGGAGAAGGCTGCACAGGCAGCTGAAGATGGATGCCACCATGTCATCATTTACACAAAGGAAGATGTTGTCACAAGAGTCAAGGAGTTCACAGCTGGGAAAGGTGTCAATGTGGTATATGATTCTGTTGGCAAGGATACATACAAGGTACTGTACCGTTGCATCTTGCA] [+] EMBL CF305149 [ GAACACCGCCATCGGCGTCAATTTCATCGACGTCTACTACCGCCAGGGGGTCTACTCCGCTCCACTGCCCTTCGTCCCTGGGAGGGAAGCCGTTGGAGTGGTGACCGCTGTAGGTCCTGGCCTGACTGGCAGAAAGGTTGGGGACGTCGTCGCCTATGCCGGCAATCCCATGGGCTCTTATGCTCAAGAGCAGATTATTCCCGCCTCCGTCGCTGTTCCCCTTCCTCCTTCCATCGACCACAACACTGCTGCCGCTATTATGCTCAAGGGGATGACTGCTCACGTTCTACTTCGCCGTGTTTACAAGGTCCAGAGTGGTGATTGTGTTCTGGTCCACGCTGCTGCCGGTGGGGTTGGATCACTCCTTTGTCAATGGGCAAATGCCCTTGGTGCCACTGTCATCGGGACTGTTTCAAATGAGGAGAATGCTGCACAGGCAGCTGAAGATGGATGCCACCATGTCATCATTTACACAAAGGAAGATGTTGTCACAAGAGTCAAGGAG ] [+] EMBL CF279093 [ CCCTGGGAGGGAAGCCGTTGGAGTGGTGACCGCTGTAGGTCCTGGCCTGACTGGCAGAAAGGTTGGGGACGTCGTCGCCTATGCCGGCAATCCCATGGGCTCTTATGCTCAAGAGCAGATTATTCCCGCCTCCGTCGCTGTTCCCCTTCCTCCTTCCATCGACCACAACACTGCTGCCGCTATTATGCTCAAGGGGATGACTGCTCACG ] consensusID : consensus_14360#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [AAGGCAGTAGACCTTGTTCTGTTGTTCAGGTGTTAGTACCACTTCAGTAGTAGGTACTGATGGTGGGCATAATAACTTCATTTTTTAGTAACAAAAAGATGCACAGTTATCTGTATCCAGTGTCTGGTTTTATTTTTAGTTTCAAAGCAATGTGTTTTGGGCTTGAATCAGCTGATTTCATTTTATGGAGTACTCCTATATATGAATGTACTAGCATTAAGAATAGTAGAATGGCATTTGATTGACAGGCATATGTGTTTCAGGGTTCGGTGGAATGCTTGGCGTGGCGTGGTATGCTGGTGTCGTTTGGGCAGTCGTCAGGTAGGCCTGATCCCATTCCGCTGAGCGATCTGGCAAGCAAGTCGCTGTTGGTAACAAGGCCCAGCCTGATGCATTACACTGCTACCCGCGACGAGTTGCTGGAGTCGGCCGGTGAGGTGTTTGCCAATGTAGGAAGCGGGGTGTTGCGCATCCGTGTGAACCACACATATCCATTGTCTCAAGCTGCTCGCGCTCATGCGGATCTCCAGGCCAGGAAGACGACCGGATCCATCCTGCTCATCCCAGATGATGCATGATA] [+] EMBL CF304371 [AAGGCAGTAGACCTTGTTCTGTTGTTCAGGTGTTAGTACCACTTCAGTAGTAGGTACTGATGGTGGGCATAATAACTTCATTTTTTAGTAACAAAAAGATGCACAGTTATCTGTATCCAGTGTCTGGTTTTATTTTTAGTTTCAAAGCAATGTGTTTTGGGCTTGAATCAGCTGATTTCATTTTATGGAGTACTCCTATATATGAATGTACTAGCATTAAGAATAGTAGAATGGCATTTGATTGACAGGCATATGTGTTTCAGGGTTCGGTGGAATGCTTGGCGTGGCGTGGTATGCTGGTGTCGTTTGGGCAGTCGTCAGGTAGGCCTGATCCCATTCCGCTGAGCGATCTGGCAAGCAAGTCGCTGTTGGTAACAAGGCCCAGCCTGATGCATTACACTGCTACCCGCGACGAGTTGCTGGAGTCGGCCGGTGAGGTGTTTGCCAATGTAGGAAGCGGGGTGTTGCGCATCCGTGTGAACCACACATATCCATTGTCTCAAGCTGCTCGCGCTCATGCGGATCTCCAGGCCAGGAAGACGACCGGATCCATCCTGCTCATCCCAGATGATGCATGATA] consensusID : consensus_14360#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence [TTTAAANCGGGGAACGGTTGCCNNGGTAACCCCAAGGTTGNAATNAAACCCNTCATTAAGGGGNACCAAAAGNGGGGNTTCNCCGCGGNGGNGGCCGTTAAGAAANAGGGNAATCCCCCGGGCGCAGGGAATTGGCAGGGNTTTGTNCNGGATTTGGGCAGGGGCATAACAATGAAACCCGGGACGAGTGTGGGANTCGCCCGGTGGAGGTGTTNGCCAAATGTAGGGAGCGGGGGTGTGGCGCATCCGTGTGGAACNAAAACATATCCATTGTCTCAAGCTGGTTCGCGNTCATGCGGAATNTCCAGGCCAGGGAAGACGGACCGGATCCATCCTGCTCATCCCAGATGATGCATGATAACTCCAGTACTAGTGTAGGAGTAGTAGTTATTCCAGTACAAAAAGTGTCTCTTCTCCAATGCCGCTGCTGTTTCTTACTTTAGTACTCCTGTATTTTTCATGCATTATCAATCAGGTTCAGGTTTGGTTGCCAGTTGATGTGTGTCTGCGTGCGTTTCGTTGTGGTTTTCATGTTGACAGGACAGGACGTATACTATACATAAATAAAGGGCA] [-] EMBL BE229143 [TTTAAANCGGGGAACGGTTGCCNNGGTAACCCCAAGGTTGNAATNAAACCCNTCATTAAGGGGNACCAAAAGNGGGGNTTCNCCGCGGNGGNGGCCGTTAAGAAANAGGGNAATCCCCCGGGCGCAGGGAATTGGCAGGGNTTTGTNCNGGATTTGGGCAGGGGCATAACAATGAAACCCGGGACGAGTGTGGGANTCGCCCGGTGGAGGTGTTNGCCAAATGTAGGGAGCGGGGGTGTGGCGCATCCGTGTGGAACNAAAACATATCCATTGTCTCAAGCTGGTTCGCGNTCATGCGGAATNTCCAGGCCAGGGAAGACGGACCGGATCCATCCTGCTCATCCCAGATGATGCATGATAACTCCAGTACTAGTGTAGGAGTAGTAGTTATTCCAGTACAAAAAGTGTCTCTTCTCCAATGCCGCTGCTGTTTCTTACTTTAGTACTCCTGTATTTTTCATGCATTATCAATCAGGTTCAGGTTTGGTTGCCAGTTGATGTGTGTCTGCGTGCGTTTCGTTGTGGTTTTCATGTTGACAGGACAGGACGTATACTATACATAAATAAAGGGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14360#0 TGGACTGAAGGAGTAGAAACTCTCTCCAGTCCGTCTGCCTCTCTCACCACCACCACCGTG 60 consensus_14360#1 ------------------------------------------------------------ consensus_14360#3 ------------------------------------------------------------ consensus_14360#2 ------------------------------------------------------------ consensus_14360#0 CGCTGCTCCAAGGGGGAGATGGCGGTGGTGAAGTGCATCAGGGTCCACGAGCTGGGCGGG 120 consensus_14360#1 -----------GGGGCCCCTTAAGGTGGTGAAGTGCATCAGGGTCCACGAGCTGGGCGGG 49 consensus_14360#3 -------------------------------TTTAAANCGGGGAACGGTTGCCNNGGTAA 29 consensus_14360#2 ------------AAGGCAGTAGACCTTGTTCTGTTGTTCAGGTGTTA-GTACCACTTCAG 47 * * ** * consensus_14360#0 CCTGAGGTGTTGA-GATGGGAGCAAGTGGAGG----TCGGGGAGCCCAAGGAGGGCGAGA 175 consensus_14360#1 CCTGAGGTGTTGA-GATGGGAGCAAGTGCCCG----TCGGGGAGCCCAAGGAGGGCGAGA 104 consensus_14360#3 CCCCAAG-GTTGN-AATNAAACCCNTCATTAA------GGGGNACCAAAAGNGGGGNTTC 81 consensus_14360#2 TAGTAGGTACTGATGGTGGGCATAATAACTTCATTTTTTAGTAACAAAAAGATGCACAGT 107 * * ** * * * ** * * consensus_14360#0 TCCG-GATCAAGAACACCGCCATCGGCGTCAATTTCATCGACGTCTACTACCGCCAGGGG 234 consensus_14360#1 TCCG-GATCAAGAACACCGCCATCGGCGTCAATTTCATCGACGTCTACTACCGCCAGGGG 163 consensus_14360#3 NCCGCGGNGGNGGCCGTTAAGAAANAGGGNAATCCCCCGGGCGCAGGGAATTGGCAGGGN 141 consensus_14360#2 TATCTGTATCCAGTGTCTGGTTTTATTTTTAGTTTCAAAGCAATGTGTTTTGGGCTTGAA 167 * * * * * * * * consensus_14360#0 GTCTACTCCGCTCCA--CTGCCCTTCGTCCCTGGGAG--GGAAGCCGTTGGAGTGGTGAC 290 consensus_14360#1 GTCTACTCCGCTCCA--CTGCCCTTCGTCCCTGGGAG--GGAAGCCGTTGGAGTGGTGAC 219 consensus_14360#3 TTTGTNCNGGATTTGGGCAGGGGCATAACAATGAAACCCGGGACGAGTGTGGGANTCGCC 201 consensus_14360#2 --TCAGCTGATTTCATTTTATGGAGTACTCCTATATA--TGAATGTACTAGCATTAAGAA 223 * * * * * * consensus_14360#0 CGCTGTA--GGTCCTGGCCTGACTGGCAGAAAGGTTGGGGACGTCGTCGCCTATGCCGGC 348 consensus_14360#1 CGCTGTA--GGTCCTGGCCTGACTGGCAGAAAGGTTGGGGACGTCGTCGCCTATGCCGGC 277 consensus_14360#3 CGGTGGA--GGTGTTNGCCAAAT--GTAGGGAG--CGGGGGTGTGG-CGCATCCGTGTGG 254 consensus_14360#2 TAGTAGAATGGCATTTGATTGACAGGCATATGTGTTTCAGGGTTCGGTGGA-ATGCTTGG 282 * * ** * * * * * * * * * * * consensus_14360#0 AATCCCATGGGCT-CTTATGCTCAAGAGCAGATTATTCCCGCCTCCGTCGCTGTTCCCCT 407 consensus_14360#1 AATCCCATGGGCT-CTTATGCTCAAGAGCAGATTATTCCCGCCTCCGTCGCTGTTCCCCT 336 consensus_14360#3 AACNAAAACATAT-CCATTGTCTCA----AGCTGGTTCGCGNTCATG-CGGAATNTCCAG 308 consensus_14360#2 CGTGGCGTGGTATGCTGGTGTCGTT---TGGGCAGTCGTCAGGTAGGCCTGATCCCATTC 339 * * ** * * * * * consensus_14360#0 TCCTCCTTCCATCGACCACAACACTGCTGCCGCTATTATGCTCAAGGGGATGACTGCTCA 467 consensus_14360#1 TCCTCCTTCCATCGACCACAACACTGCTGCCGCTATTATGCTCAAGGGGATGACTGCTCA 396 consensus_14360#3 GCCAGGGAAGACGGACCGGATCCATCCTGCTCATCCCAGAT---GATGCATGATAACTCC 365 consensus_14360#2 CGCTGAGCGATCTGGCAAGCAAGTCGCTGTTGGTAACAAGGCCCA--GCCTGATGCATTA 397 * * * *** * * * *** * consensus_14360#0 CGTTCTACTTCGCCGTGTTTACAAGGTCCAGAGTGGTGATTGTGTTCTGGTCCACGCTGC 527 consensus_14360#1 CGTTCTACTTCGCCGTGTTTACAAGGTCCAGAGTGGTGATTGTGTTCTGGTCCACGCTGC 456 consensus_14360#3 AGTACTAGTGTAGGAGTAGTAGTTATTCCAGTACAAAAAGTGTCTCTTCTCCAATGCCGC 425 consensus_14360#2 CACTGCTACCCGCGACGAGTTGCTGGAGTCGGCCGGTGAG-GTGTTT--GCCAATGTAGG 454 * * * ** * * * * * consensus_14360#0 TGCCGGTGGGGTTGGATCACTCCTTTGTCAATGGGCAAATGCCCTTGGTG-CCACTGTCA 586 consensus_14360#1 TGCCGGTGGGGTTGGATCACTCCTTTGTCAATGGGCAAATGCCCTTGGTG-CCACTGTCA 515 consensus_14360#3 TGCTGTT-------------TCTTACTTTAGTACTCCTGTATTTTTCATG-C-ATTATCA 470 consensus_14360#2 AAGCGGGG--------------TGTTGCGCATCCGTGTGAACCACACATATCCATTGTCT 500 * * * * * * ** consensus_14360#0 TCGGGACTGTTTCAAATGAGGAGAAGGCTGCACAGGCAGCTGAAGATGGATGCCACCATG 646 consensus_14360#1 TCGGGACTGTTTCAAATGAGGAGAAGGCTGCACAGGCAGCTGAAGATGGATGCCACCATG 575 consensus_14360#3 ----ATCAGGTTCAGGTTTGGTTGCCAGTTGATGTGTGTCTGCG--TGCGTTTCGTTGTG 524 consensus_14360#2 C--AAGCTGCTCGCGCTCATGCGGAT-CTCCAGGCCAGGAAGACGACCGGATCCATCCTG 557 * * * * * * * * * ** consensus_14360#0 -TCATCATTTACACAAAGGAAGATGT-TGTCACA-AGAGTCAAGGAGTTCACAGCTGGGA 703 consensus_14360#1 -TCATCATTTACACAAAGGAAGATGT-TGTCACA-AGAGTCAAGGAGTTCACAGCTGGGA 632 consensus_14360#3 GTTTTCATGTTGACAGGACAGGACGTATACTATACATAAATAAAGGGCA----------- 573 consensus_14360#2 CTCATC--CCAGATGATGCATGATA----------------------------------- 580 * ** * * ** consensus_14360#0 AAGGTGTCAATGTGGTATATGATTCTGTTGGCAAGGATACATACAAGGGTTCGGTGGAAT 763 consensus_14360#1 AAGGTGTCAATGTGGTATATGATTCTGTTGGCAAGGATACATACAAGGTACTGTACCGTT 692 consensus_14360#3 ------------------------------------------------------------ consensus_14360#2 ------------------------------------------------------------ consensus_14360#0 GCTTGGCGTGGCGTGGTATGCTGGTGTCGTTTGGGCAGTCGTCAGGTAGGCCTGATCCCA 823 consensus_14360#1 GCATCTTGCA-------------------------------------------------- 702 consensus_14360#3 ------------------------------------------------------------ consensus_14360#2 ------------------------------------------------------------ consensus_14360#0 TTCCGCTGAGCGATCTGGCAAGCAAGTCGCTGTTGGTAACAAGGCCCAGCCTGATGCATT 883 consensus_14360#1 ------------------------------------------------------------ consensus_14360#3 ------------------------------------------------------------ consensus_14360#2 ------------------------------------------------------------ consensus_14360#0 ACACTGCTACCCGCGACGAGTTGCTGGAGTCGGCCGGTGAGGTGTTTGCCAATGTAGGAA 943 consensus_14360#1 ------------------------------------------------------------ consensus_14360#3 ------------------------------------------------------------ consensus_14360#2 ------------------------------------------------------------ consensus_14360#0 GCGGGGTGTTGCGCATCCGTGTGAACCACACATATCCATTGTCTCAAGCTGCTCGCGCTC 1003 consensus_14360#1 ------------------------------------------------------------ consensus_14360#3 ------------------------------------------------------------ consensus_14360#2 ------------------------------------------------------------ consensus_14360#0 ATGCGGATCTCCAGGCCAGGAAGACGACCGGATCCATCCTGCTCATCCCAGATGATGCAT 1063 consensus_14360#1 ------------------------------------------------------------ consensus_14360#3 ------------------------------------------------------------ consensus_14360#2 ------------------------------------------------------------ consensus_14360#0 GATACTCCAGTACTAGTGTAGGAGTAGTAGTTATTCCAGTACAAAAAGTGTCTCTTCTCC 1123 consensus_14360#1 ------------------------------------------------------------ consensus_14360#3 ------------------------------------------------------------ consensus_14360#2 ------------------------------------------------------------ consensus_14360#0 AATGCCGCTGCTGTTTCTTACTTTAGTACTCCTGTATTTTTCATGCATTATCAATCAGGT 1183 consensus_14360#1 ------------------------------------------------------------ consensus_14360#3 ------------------------------------------------------------ consensus_14360#2 ------------------------------------------------------------ consensus_14360#0 TCAGGTTTGGTTGCCAGTTGATGTGTGTCTGCGTGCGTTTCGTTGTGGTTTTCATGTTGA 1243 consensus_14360#1 ------------------------------------------------------------ consensus_14360#3 ------------------------------------------------------------ consensus_14360#2 ------------------------------------------------------------ consensus_14360#0 CAGGACAGGACGTATACTATACATAAATAAAGGGCAGCATCTTTGAAATAAAGATCACTT 1303 consensus_14360#1 ------------------------------------------------------------ consensus_14360#3 ------------------------------------------------------------ consensus_14360#2 ------------------------------------------------------------ consensus_14360#0 ATACTAAAAAAAATTTGAGTTATTTATTGCTCAACTGGCAATGGGTGTTGCTTGAATAAC 1363 consensus_14360#1 ------------------------------------------------------------ consensus_14360#3 ------------------------------------------------------------ consensus_14360#2 ------------------------------------------------------------ consensus_14360#0 CTTGGTTCTGTTCCTGCTTACTGTATCTCAACTGGCAAAGAGCAGGTAATATAAGGTTTT 1423 consensus_14360#1 ------------------------------------------------------------ consensus_14360#3 ------------------------------------------------------------ consensus_14360#2 ------------------------------------------------------------ consensus_14360#0 TTATTTTAAAAAAAAAA 1440 consensus_14360#1 ----------------- consensus_14360#3 ----------------- consensus_14360#2 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||