These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14362#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1233 fasta sequence [TCGCGTGAAGCGCAGCAAGGGGCCGACGGGAGATCTAGGGTTTCGCCGCAGGCTCCCCTTCGGCCGGCCGGCCGCCGCCTGTCCGGCCCCGCTCGGCGCCGCCCCTGTTGGTCCCCGCCCGTCACTGCCCAGCGCCGCCCCACCCGACCCCGCCGCCACCCGACGCCGCCCCTGCTCGTCCCGCCCGACGACGCCGCCCCTGTTCCCGTTTCTCTCCGGCCATCTTCCCACAGGCCACACTGTCTCTCCCTCTCCCTCCGCCTGCAGCTGTCGCACGCCATTTTCCTCTCCCTCCGACCGTCGATAGCTACCGGGGCTGCGGGGCCCCGCAGGGGCCGGAGGCGGGGCCGTTCCTAGAGGCCCCACCTGCGCCGGCGCCGCCGCAGCAGCAGCAACGATGAGCAAGAGCGGCGGCGCGGCGGCGGGGCCGACGGCGGCGGCCGCGGCAG-CCGCGGTGCAGAAGCAGAAGACGCTTCTCCAGAAGGCTGACGCCGACGTCTCCAGCCTCGTTGACAACTTCGCCGCCCTCATCAACATCGCGCGCGTCAACGACCCGCCGGTGCGCAACACGCAGGAGGCCTTCCAGATGGACATGCGCGGCTCCCGCATGGTACATTCAGCTGATTCTCTGTTGAAACTAGTGTCAGAGCTTAAGAGAACAGCTATCTTTTCTGGGCTTGCTTCTTTAACTGAAAATGTGGATAGGCGGATTGAAATCTTTAGTCAACAAGTTGAAGGAACAGAGAGAATGCTGGAGAGGATTGGGCAGGAAGCAGCAGGAAGCCTCAAAGAGTTGGAGGCACATTACTACTCATCTGTTGTGCGAACACCACCGGATGAATGAGGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGATGATGGCTTTTTGCAGGAGCAACAAATGTTGATCTCTGAACCATTGTATATTGCTGATGTAACCATTTGGTCAAGGAGTCCTGGTGTGGCAGCTCACATTTATTTTTATAGCTCAAGTGAATCATGACATAGTTTCATCTTTTTCTTTTTTTATTGTCAAATTTCACTACTATGACTGTATTTAGTTGTCTCTGTATTGTCAAGTGACCTCAAGCTTTGTTGGGTGATGCCTCCTTGCCTTAAACCGGATACAGGCCTTGATGATACTGCAATATTTAGGTTTTAATGATTAATCAATGTGGTTTTCGCGTACCATAAAGGG] [+] EMBL AK120540 [TCGCGTGAAGCGCAGCAAGGGGCCGACGGGAGATCTAGGGTTTCGCCGCAGGCTCCCCTTCGGCCGGCCGGCCGCCGCCTGTCCGGCCCCGCTCGGCGCCGCCCCTGTTGGTCCCCGCCCGTCACTGCCCAGCGCCGCCCCACCCGACCCCGCCGCCACCCGACGCCGCCCCTGCTCGTCCCGCCCGACGACGCCGCCCCTGTTCCCGTTTCTCTCCGGCCATCTTCCCACAGGCCACACTGTCTCTCCCTCTCCCTCCGCCTGCAGCTGTCGCACGCCATTTTCCTCTCCCTCCGACCGTCGATAGCTACCGGGGCTGCGGGGCCCCGCAGGGGCCGGAGGCGGGGCCGTTCCTAGAGGCCCCACCTGCGCCGGCGCCGCCGCAGCAGCAGCAACGATGAGCAAGAGCGGCGGCGCGGCGGCGGGGCCGACGGCGGCGGCCGCGGCAG CCGCGGTGCAGAAGCAGAAGACGCTTCTCCAGAAGGCTGACGCCGACGTCTCCAGCCTCGTTGACAACTTCGCCGCCCTCATCAACATCGCGCGCGTCAACGACCCGCCGGTGCGCAACACGCAGGAGGCCTTCCAGATGGACATGCGCGGCTCCCGCATGGTACATTCAGCTGATTCTCTGTTGAAACTAGTGTCAGAGCTTAAGAGAACAGCTATCTTTTCTGGGCTTGCTTCTTTAACTGAAAATGTGGATAGGCGGATTGAAATCTTTAGTCAACAAGTTGAAGGAACAGAGAGAATGCTGGAGAGGATTGGGCAGGAAGCAGCAGGAAGCCTCAAAGAGTTGGAGGCACATTACTACTCATCTGTTGTGCGAACACCACCGGATGAATGAGGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGATGATGGCTTTTTGCAGGAGCAACAAATGTTGATCTCTGAACCATTGTATATTGCTGATGTAACCATTTGGTCAAGGAGTCCTGGTGTGGCAGCTCACATTTATTTTTATAGCTCAAGTGAATCATGACATAGTTTCATCTTTTTCTTTTTTTATTGTCAAATTTCACTACTATGACTGTATTTAGTTGTCTCTGTATTGTCAAGTGACCTCAAGCTTTGTTGGGTGATGCCTCCTTGCCTTAAACCGGATACAGGCCTTGATGATACTGCAATA ] [+] EMBL CB645565 [ AGCAACCGTACAACGGGAGATCTAGGGTTTCGCCGCAGGCTCCCCTTCGGCCGGCCGGCCGCCGCCTGTCCGGCCCCGCTCGGCGCCGCCCCTGTTGGTCCCCGCCCGTCACTGCCCAGCGCCGCCCCACCCGACCCCGCCGCCACCCGACGCCGCCCCTGCTCGTCCCGCCCGACGACGCCGCCCCTGTTCCCGTTTCTCTCCGGCCATCTTCCCACAGGCCACACTGTCTCTCCCTCTCCCTCCGCCTGCAGCTGTCGCACGCCATTTTCCTCTCCCTCCGACCGTCGATAGCTACCGGGGCTGCGGGGCCCCGCAGGGGCCGGAGGCGGGGCCGTTCCTAGAGGCCCCACCTGCGCCGGCGCCGCCGCAGCAGCAGCAACGATGAGCAAGAGCGGCGGCGCGGCGGCGGGGCCGACGGCGGCGGCCGCGGCAG CCGCGGTGCAGAAGCAGAAGACGCTTCTCCAGAAGGCTGACGCCGACGTCTCCAGCCTCGTTGACAACTTCGCCGCCCTCATCAACATCGCGCGCGTCAACGACCCGCCGGTGCGCAACACGCAGGAGGCCTTCCAGATGGACATGCGCGGCTCCCGCATGGTACATTCAGCTGATTCTCTGTTGAAACTAGTGTCAGAGCTTAAGAGAACAGCTATCTTTTCTGGGCTTGCTTCTTTAACTGAAAATGTGGATAGGCGGATTGAAATCTTTAGTCAACAAGTTGAAGGAACAGAGAGAATGCTGGAGAGGATTGGGCAGGAAGCAGCAGGAAGCCTCAAAGAATTGGAGGCACATTAC ] [+] EMBL CB661349 [ GCCGCAGGCTCCCCTTCGGCCGGCCGGCCGCCGCCTGTCCGGCCCCGCTCGGCGCCGCCCCTGTTGGTCCCCGCCCGTCACTGCCCAGCGCCGCCCCACCCGACCCCGCCGCCACCCGACGCCGCCCCTGCTCGTCCCGCCCGACGACGCCGCCCCTGTTCCCGTTTCTCTCCGGCCATCTTCCCACAGGCCACACTGTCTCTCCCTCTCCCTCCGCCTGCAGCTGTCGCACGCCATTTTCCTCTCCCTCCGACCGTCGATAGCTACCGGGGCTGCGGGGCCCCGCAGGGGCCGGAGGCGGGGCCGTTCCTAGAGGCCCCACCTGCGCCGGCGCCGCCGCAGCAGCAGCAACGATGAGCAAGAGCGGCGGCGCGGCGGCGGGGCCGACGGCGGCGGCCGCGGCAG CCGCGGTGCAGAAGCAGAAGACGCTTCTCCAGAAGGCTGACGCCGACGTCTCCAGCCTCGTTGACAACTTCGCCGCCCTCATCAACATCGCGCGCGTCAACGACCCGCCGGTGCGCAACACGCAGGAGGCCTTCCAGATGGACATGCGCGGCTCCCGCATGGTACATTCAGCTGATTCTCTGTTGAAACTAGTGTCAGAGCTTAAGAGAACAGCTATCTTTTCTGGGCTTGCTTCTTTAACTGAAAATGTGGATAGGCGGATTGAAATCTTTAGTCAACAAGTTGAAGGAACAGAGAGAATGCTGGAGAGGATTGGGCAGGAAGCATCATGAAGCCTCAAAGAGTTGGAGGCACATTACTACTCATCTGTTGT ] [-] EMBL CB645566 [ AACGATGAGCAAGAGCGGCGGCGCGGCGGCGGGGCCGACGGCGGCGGCCGCGGCAG CCGCGGTGCAGAAGCAGAAGACGCTTCTCCAGAAGGCTGACGCCGACGTCTCCAGCCTCGTTGACAACTTCGCCGCCCTCATCAACATCGCGCGCGTCAACGACCCGCCGGTGCGCAACACGCAGGAGGCCTTCCAGATGGACATGCGCGGCTCCCGCATGGTACATTCAGCTGATTCTCTGTTGAAACTAGTGTCAGAGCTTAAGAGAACAGCTATCTTTTCTGGGCTTGCTTCTTTAACTGAAAATGTGGATAGGCGGATTGAAATCTTTAGTCAACAAGTTGAAGGAACAGAGAGAATGCTGGAGAGGATTGGGCAGGAAGCAGCAGGAAGCCTCAAAGAGTTGGAGGCACATTACTACTCATCTGTTGTGCGAACACCACCGGATGAATGAGGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGATGATGGCTTTTTGCAGGAGCAACAAATGTTGATCTCTGAACCATTGTATATTGCTGATGTAACCATTTGGTCAAGGAGTCCTGGTGTGGCAGCTCACATTTATTTTTATAGCTCAAGTGAATCATGACATAGTTTCATCTTTTTCTTTTTTTATTGTCAAATTTCACTACTATGACTGTATTTAGTTGTCTCTGTATTGTCAAGTGACCTCAAGCTTTGTTGGGTGATGCCTCCTTGCCTTAAACCGGATACAGGCCTTGATGATACTGCAATATTTAGGTTTTAATGATTAATCAATGTGGTTTTCGCGTACCATAAAGGG] [-] EMBL CB661350 [ CGGCAGTCCGCGGTGCAGAAGCAGAAGACGCTTCTCCAGAAGGCTGACGCCGACGTCTCCAGCCTCGTTGACAACTTCGCCGCCCTCATCAACATCGCGCGCGTCAACGACCCGCCGGTGCGCAACACGCAGGAGGCCTTCCAGATGGACATGCGCGGCTCCCGCATGGTACATTCAGCTGATTCTCTGTTGAAACTAGTGTCAGAGCTTAAGAGAACAGCTATCTTTTCTGGGCTTGCTTCTTTAACTGAAAATGTGGATAGGCGGATTGAAATCTTTAGTCAACAAGTTGAAGGAACAGAGAGAATGCTGGAGAGGATTGGGCAGGAAGCAGCAGGAAGCCTCAAAGAGTTGGAGGCACATTATTACTCATCTGTTGTGCGAACACCACCGGATGAATGAGGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATTCAGAGTGAATGAGCAGACATGTCCAAGATGATGGCTTTTTGCAGGAGCAACAAATGTTGATCTATGAACCATTGTATATTGTTGATGTAACCATTTGGTCAAGGAGTCCTGGTGTGGCAGCTCACATTTATTTTTATAGCTCAAGTGAATCATGACATAGTTTCATCTTTTTCTTTTTTTATCGTCAAATTTCTCTACTATGACTGTATTTAGTTGTCTCGGTATTGTCAAGTGACGTCAAGCTTTGTTGGG ] consensusID : consensus_14362#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 816 fasta sequence [CCTAGGTTGGTCCATTTNTAGTAGATCTTTTGTAGAACCATCTAATGAAGAAATTCTGGATGTAAATCATGATTTTTGCAGCTATTGCTTGCTTAATCTGCAGACTACTGATTTTTGCTTCTACTATAGCTACTATTGAATTCAGTTTTTTGCTTGCTCAATCT--TATGTGTCCTAATTTCATTTTGATATCTGAAGCACTGCTAGTATTAGTCTCATATGCATGTCCATGTTTCTAGCACTGCTAGCTATTAGGCAAAGCACACAATACAGCTTACAAACAATCACTTGTCAAACTGAAAACTTGGTAAAAATGTTGCCAAGGATCAATAGTTGGCTGGTTCCAGGAAATTTGAGACAATTGCTCACTGCACAAAAGCATTGCCTAGATTATTGCATTTTACAACTGAAAACTGAAGGAAACTTCTTTCTTCTTTACAGGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGATGATGGC-TTTT-GCAGGAGCAACAAATGTTGATCTTTGAACCATTGTATATTGCTGATGTAACCATTTGGTCAAGGAGTCCTGGTGTGGCAGCTCACATTTATTTTTATAGCTCAAGTGAATCATGACATAGTTTCATCTTTTTCTTTTTTTATTGTCAAATTTCACTACTATGACTGTATTTAGTTGTCTCTGTATTGTCAAGTGACCTCAAGCTTTGTTGGGTGATGCCTCCTTGCCTTAAACCGGATACAGGCCTTGATGATACTGCAATATTTTTGTTTTAATGATTAATCAATGTGGTTTTCGCGTA] [-] EMBL CB660108 [CCTAGGTTGGTCCATTTNTAGTAGATCTTTTGTAGAACCATCTAATGAAGAAATTCTGGATGTAAATCATGATTTTTGCAGCTATTGCTTGCTTAATCTGCAGACTACTGATTTTTGCTTCTACTATAGCTACTATTGAATTCAGTTTTTTGCTTGCTCAATCT TATGTGTCCTAATTTCATTTTGATATCTGAAGCACTGCTAGTATTAGTCTCATATGCATGTCCATGTTTCTAGCACTGCTAGCTATTAGGCAAAGCACACAATACAGCTTACAAACAATCACTTGTCAAACTGAAAACTTGGTAAAAATGTTGCCAAGGATCAATAGTTGGCTGGTTCCAGGAAATTTGAGACAATTGCTCACTGCACAAAAGCATTGCCTAGATTATTGCATTTTACAACTGAAAACTGAAGGAAACTTCTTTCTTCTCTACAGGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGATGATGGCTTTTT GCAGGAGCAACAAATGTTGATCTCTGAACCATTGTATATTGCTGATGTAACCATTTGGTCAAGGAGTCCTGGTGTGGCAGCTCACATTTATTTTTATAGCTCAAGTGAATCATGACATAGTTTCATCTTTTTCTTTTTTTATTGTCAAATTTCACTACTATGACTGTATTTAGTTGTCTCTGTATTGTCAAGTGACCTCAAGCTTTGTTGGGTGATGCCTCCTTGCCTTAAACCGGATACAGGCCTTGATGATACTGCAATATTGGTGTTTTAATGATTAATCAATGTGGTTTTCGCGTA] [-] EMBL CB633075 [ TGATTTTTGCAGCTATTGCTTGCTTAATCTGCAGACTACTGATTTTTGCTTCTATTATAGCTACTATTGAATTCAGTTTTTTGCTTGCTCAATCTTATATGTGTCCTAATTTCATTTTGATATCTGAAGCACAGCTAGCATTAGTCTCATATGCATGTCCATGTTTCTAGCACTGCTAGCTATTAGGCAAAGCACACAATACAGCTTACAAACAATCACTTGTCAAACTGAAAACTTGGTAAAAATGTTGCCAAGGATCAATAGTTGGCTGGTTTCAGGAAATTTGAGACAATTGCTCACTGCACAAAAGCATTGCCTAAATTATTGCATTTTACAACTGAAAACTGAAGGAAACTTCTTTTTTCTTTACAGGCTTTGGGAGGAAGTTTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGATGATGGC TTTT GCAGGAGCAACAAATGTTGATCTTTGAACCATTGTATATTGCTGATGTAACCATTTGGTTTAGGAGT GGGTGTGGCAGCTCACATTTATTTTTATAGCTCAAGTGAATCATGACATAGTTTCATCTTTTTCTTTTTTTATTTTCAAATTTCACTACTATGACTGTATTTAGTTGTCTCTGTATTGTCAAGTGACCTCAAGCTTTGTTGGGTGATGCCTCCTTGCCTTAAACCGGATACAGGCCTTGATGATACTGCAATAATTTTGTTTTAATGATTAATCAATGTGGTT ] [-] EMBL CB660185 [ ACAATACAGCGTACAAACAATCTCTTGTCAATCTGAAACCGTGGTAAAAATGTTGCCAAGGATCAATAGTTGGCTGGTTCCAGGAAATTCGAGACAATTGCTCACCGCACAAAAGCATTCCCTAGATTATTGCATTTTACAAGTGAAAACGGAAGGAAACTTCTTTCTTCTTTACAGGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGAGGATGGC TTTTGGCAGGAGCAACAAATGTTGATTTTTGAACCATTGTATATTGGTGATGTAACCATTTGGTCAAGGAGTCCTGGTGTGGCAGCTCACATTTATTTTTATAGCTCAAGAGAATCATGTCATAGTTTCATCTTTTTCTTTTTTTATTGTCAAATTTCAATACTATGCCTGTATTTAGTTGTCTCTGTATTGTCAAGTGGCCTCAAGCTTTGTTGGGTGATCCC ] [+] EMBL AA751042 [ TCAAGTGACCTCAAGCTTTGTTGGGTGATTCCTCCTTGCCTTAAACCGGATACAGGCCTTGATGATACTGC ATATTTTTGTTTTAATGATTAATCAATG ] consensusID : consensus_14362#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [CGTCATCGCCGGGAAATATTCAGCTTCTCTGGTGGCCGAGGAAAAAATCCTCTCGACGCAGCGACGCAATGAGAGGGGGCCTGCGGCGGGGACGGCTGCACGGCGCGGCGCGACTACGACGTGACGGCAACGGCACGCTCTCTCCTCCGGTGGCCACCTTCTCCCCGGCTTTTGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAAACATGTACAAGATGATGGCTTTTTGCAGGAGCAACAAATGTTGATCTCTGAACCTTGTATATTGCTGATGTAACCATTTGGTCTGGGAGTCCTGGTGTGGCAGCTCACATTTATTTTTATAGCTCAAGTGAATCATGACATAGTTTCATCTTTTTCTTTTTTTATTGTCAAATTTCACTACTATGACTGTATTTAGTTGTCTCTGTATTTGTCAGTGACCTCAAGCTTTGTTGGGTGATGCCTCCTTGCCTTAAACCGGATACAGGCCTTGATGATACTGCAATATTTTTGTTTTAATGATTAATCATGTGATTTTCGCGTAAAAA] [+] EMBL BI798565 [CGTCATCGCCGGGAAATATTCAGCTTCTCTGGTGGCCGAGGAAAAAATCCTCTCGACGCAGCGACGCAATGAGAGGGGGCCTGCGGCGGGGACGGCTGCACGGCGCGGCGCGACTACGACGTGACGGCAACGGCACGCTCTCTCCTCCGGTGGCCACCTTCTCCCCGGCTTTTGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAAACATGTACAAGATGATGGCTTTTTGCAGGAGCAACAAATGTTGATCTCTGAACCTTGTATATTGCTGATGTAACCATTTGGTCTGGGAGTCCTGGTGTGGCAGCTCACATTTATTTTTATAGCTCAAGTGAATCATGACATAGTTTCATCTTTTTCTTTTTTTATTGTCAAATTTCACTACTATGACTGTATTTAGTTGTCTCTGTATTTGTCAGTGACCTCAAGCTTTGTTGGGTGATGCCTCCTTGCCTTAAACCGGATACAGGCCTTGATGATACTGCAATATTTTTGTTTTAATGATTAATCATGTGATTTTCGCGTAAAAA] consensusID : consensus_14362#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 515 fasta sequence [CTCTCGACGCAGCGACGCAACGAGAGGGGGCGCTGCGGCGGGGACGGCTGCACGGCGCGGCGCGACTCCGACGCGACGGCGACGGCACGCTCTCTCCTCCGGCAGTTGACTCCTCCGGTGGTCACCTTCTC-CCCTGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGATGATGGCTTTTGCAGGAGCAACAAATGTTGATCTCTGAACCATTGTATATTGCTGATGTAACCATTTGGTCTAGGAGT-GGGTGTGGCAGCTCACATTTATTTTTATAGCTC-AAGTGAATCATGACATAGTTTCATCTTTTTCTTTTTTTATTTTCAAATTTCACTACTATGACTGTATTTAGTTGTCTCTGTATTGTCAAGTGACCTCAAGCTTTGTTGGGTGATGCCTCCTTGCCTTAAACCGGATACAGGCCTTGATGATACTGCAATAATTTTGTTTTAATGATTAATCAATGTGGTTTTCGCGTAAAAAA] [+] EMBL OS1030A [CTCTCGACGCAGCGACGCAACGAGAGGGGGCGCTGCGGCGGGGACGGCTGCACGGCGCGGCGCGACTCCGACGCGACGGCGACGGCACGCTCTCTCCTCCGGCAGTTGACTCCTCCGGTGGTCACCTTNTC CCCTGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGATGATGGCTTTTGCAGGAGCAACAAATGTTGATCTCTGAACCATTGTATATTGCTGATGTAACCATTTGGTCTAGGAGTNGGGTGTGGCAGCTCACATTTATTTTTATAGCTCAAAGTGAATCATGA ] [+] EMBL D42632 [CTCTCGACGCAGCGACGCAACGAGAGGGGGCGCT C GC GGGACGGCTGCACGGCGCGGC CGACTCCGA CNAANGCGA NGCACGCTCTCTCCTCCGGCAGTTGACTCCTCCGGTGGTCACCTTCTC CCCTGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGATGATGGCTTTTGCAGGAGCAACAAATGTTGATCTCTGAACCATTGTATATTGCTGATGTAACCATTTGGTCTAGGAGT GGGGGTG ] [+] EMBL OSC30961 [ TCTCGACGCAGCGACGCAACGAGAGGGGGCGCTGCGGCGGGGACGGCTGCACGGCGCGGCGCGACTCCGACGCGACGGCGACGGCACGCTCTCTCCTCCGGCAGTTGACTCCTCCGGTGGTCACCTTCTC CCCTGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATNAGCAGACATGTACAAGATGATGGCTTTTGCAGGAGCAACAAATGTTGATCTCTGAACCATTGTATATTGCTGATGTAACCATTTGGTCTAGGAGT NGGTGTGGCAGCTCACATTTATTTTTATAGCTC AAGTGAATCATGACATAGTTTCATCTTATTCTTTTTTTATTTTCAAATTTCACTACTATGACTG ] [+] EMBL AU082919 [ CTCGACGCAGCGACGCAACGAGAGGGGGCGCTGCGGCGGGGACGGCTGCACGGCGCGGCGCGACTCCGACGCGACGGCGACGGCACGCTCTCTCCTCCGGCAGTTGACTCCTCCGGTGGTCACCTTCTC CCCTGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGATGATGGCTTTTGCAGGAGCAACAAATGTTGATCTCTGAACCATTGTATATTGCTGATGTAACCATTTGGTCTAGGAGT GGGTGTGGCAGCTCACATTTATTTTTATAGCTC AAGTGAATCATGACATAGTTTCATCTTTTTCTTTTTTTATTTTCAAATTTCACTACTATGACTGTATTTAGTTGTCTCTGTATTGTCAAGTGACCTCAAGCTTTGTTGGGTGATGCCTCCTTGCCTTAAACCGGATACAGGCCTTGATGATACTGCAATAATTTTGTTTTAATGATTAATCAATGTGGTTTTCGCGTAAAAAA] [+] EMBL AK059379 [ CTTCTCTACAGGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGATGATGGCTTTTGCAGGAGCAACAAATGTTGATCTCTGAACCATTGTATATTGCTGATGTAACCATTTGGTCTAGGAGT GGGTGTGGCAGCTCACATTTATTTTTATAGCTC AAGTGAATCATGACATAGTTTCATCTTTTTCTTTTTTTATTTTCAAATTTCACTACTATGACTGTATTTAGTTGTCTCTGTATTGTCAAGTGACCTCAAGCTTTGTTGGGTGATGCCTCCTTGCCTTAAACCGGATACAGGCCTTGATGATACTGCAATAATTTTGT ] consensusID : consensus_14362#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence [CGCGGCAGCCGCGGTGCAGAAGCAGAAGACGCTTCTCCAGAAGGCTGACGCCGACGTCTCCAGCCTCGTTGACAACTTCGCCGCCCTCATCAACATCGCGCGCGTCAACGACCCGCCGGTGCGCAACACGCAGGAGGCCTTCCAGATGGACATGCGCGGCTCCCGCATGGTACATTCAGCTGATTCTCTGTTGAAACTAGTGTCAGAGCTTAAGAGAACAGCTATCTTTTCTGGGCTTGCTTCTTTAACTGAAAATGTGGATAGGCGGATTGAAATCTTTAGTCAACAAGTTGAAGGAACAGAGAGAATGCTGGAGAGGATTGGGCAGGAAGCAGCAGGAAGCCTCAAAGAGTTGGAGGCACATTACTACTCATCTGTTGTGCGAACACCACCGGATGAATGAGGTAAATTCTACCTTTCTCTGAGTGAAAGATGTTTCCTTCTAATTGCTGGAGGTGCG] [+] EMBL AU075677 [CGCGGCAGCCGCGGTGCAGAAGCAGAAGACGCTTCTCCAGAAGGCTGACGCCGACGTCTCCAGCCTCGTTGACAACTTCGCCGCCCTCATCAACATCGCGCGCGTCAACGACCCGCCGGTGCGCAACACGCAGGAGGCCTTCCAGATGGACATGCGCGGCTCCCGCATGGTACATTCAGCTGATTCTCTGTTGAAACTAGTGTCAGAGCTTAAGAGAACAGCTATCTTTTCTGGGCTTGCTTCTTTAACTGAAAATGTGGATAGGCGGATTGAAATCTTTAGTCAACAAGTTGAAGGAACAGAGAGAATGCTGGAGAGGATTGGGCAGGAAGCAGCAGGAAGCCTCAAAGAGTTGGAGGCACATTACTACTCATCTGTTGTGCGAACACCACCGGATGAATGAGGTAAATTCTACCTTTCTCTGAGTGAAAGATGTTTCCTTCTAATTGCTGGAGGTGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14362#2 ------------------------------------------------------------ consensus_14362#3 ------------------------------------------------------------ consensus_14362#1 ------------------------------------------------------------ consensus_14362#0 TCGCGTGAAGCGCAGCAAGGGGCCGACGGGAGATCTAGGGTTTCGCCGCAGGCTCCCCTT 60 consensus_14362#4 ------------------------------------------------------------ consensus_14362#2 ------------------------------------------------------------ consensus_14362#3 ------------------------------------------------------------ consensus_14362#1 ------------------------------------------------------------ consensus_14362#0 CGGCCGGCCGGCCGCCGCCTGTCCGGCCCCGCTCGGCGCCGCCCCTGTTGGTCCCCGCCC 120 consensus_14362#4 ------------------------------------------------------------ consensus_14362#2 ------------------------------------------------------------ consensus_14362#3 ------------------------------------------------------------ consensus_14362#1 -------------------CCTAGGTTGGTCCATTTNTAGTAGATCTTTTGTAGAACCAT 41 consensus_14362#0 GTCACTGCCCAGCGCCGCCCCACCCGACCCCGCCGCCACCCGACGCCGCCCCTGCTCGTC 180 consensus_14362#4 ------------------------------------------------------------ consensus_14362#2 ------------------------------------------------------------ consensus_14362#3 ------------------------------------------------------------ consensus_14362#1 CTAATGAAGAAATTCTGGATGTAAATCATGATTTTTGCAGCTATTGCTTGCTTAATCTGC 101 consensus_14362#0 CCGCCCGACGACGCCGCCCCTGTTCCCGTTTCTCTCCGGCCATCTTCCCACAGGCCACAC 240 consensus_14362#4 ------------------------------------------------------------ consensus_14362#2 ------------------------------------------------------------ consensus_14362#3 ------------------------------------------------------------ consensus_14362#1 AGACTACTGATTTTTGCTTCTACTATAGCTACTATTGAATTCAGTTTTTTGCTTGCTCAA 161 consensus_14362#0 TGTCTCTCCCTCTCCCTCCGCCTGCAGCTGTCGCACGCCATTTTCCTCTCCCTCCGACCG 300 consensus_14362#4 ------------------------------------------------------------ consensus_14362#2 ------------------------------------------------------------ consensus_14362#3 ------------------------------------------------------------ consensus_14362#1 TCTTATGTGTCCTAATTTCATTTTGATATCTGAAGCACTGCTAGTATTAGTCTCATATGC 221 consensus_14362#0 TCGATAGCTACCGGGGCTGCGGGGCCCCGCAGGGGCCGGAGGCGGGGCCGTTCCTAGAGG 360 consensus_14362#4 ------------------------------------------------------------ consensus_14362#2 -------------CGTCATCGCCGGGAAATATTCAGCTTCTCTGGTGGCCGAGGAAAAAA 47 consensus_14362#3 ------------------------------------------------------------ consensus_14362#1 ATGTCCATGTTTCTAGCACTGCTAGCTATTAGGCAAAGCACACAATACAGCTTACAAACA 281 consensus_14362#0 CCCCACCTGCGCCGGCGCCGCCGCAGCAGCAGCAACGATGAGCAAGAGCGGCGGCGCGGC 420 consensus_14362#4 ------------------------------------------------------------ consensus_14362#2 TCCTCTCGACGCAGCGACGCAATGAGAGGGGGC-CTGCGGCGGG--GACGGCTGCACGGC 104 consensus_14362#3 --CTCTCGACGCAGCGACGCAACGAGAGGGGGCGCTGCGGCGGG--GACGGCTGCACGGC 56 consensus_14362#1 ATCACTTGTCAAACTGA-AAACTTGGTAAAAATGTTGCCAAGGATCAATAGTTGGCTGGT 340 consensus_14362#0 GGCGGGGCCGACGGCGGCGGCCGCGGCAGCCGCGGTGCAGAAGC--AGAAGACGCTT--C 476 consensus_14362#4 ---------------------CGCGGCAGCCGCGGTGCAGAAGC--AGAAGACGCTT--C 35 * *** * * * consensus_14362#2 GCGGCGCGACT--------------ACGACG-TGACGGCAACGGC-ACGCTCTCTC---- 144 consensus_14362#3 GCGGCGCGACT--------------CCGACG-CGACGGCGACGGC-ACGCTCTCTCCTCC 100 consensus_14362#1 TCCAGGAAATTTGAGACAATTGCTCACTGCA-CAAAAGCATTGCCTAGATTATTGCATTT 399 consensus_14362#0 TCCAGAAGGCTGACG----------CCGACGTCTCCAGCCTCGTTGACAACTTCGCC--- 523 consensus_14362#4 TCCAGAAGGCTGACG----------CCGACGTCTCCAGCCTCGTTGACAACTTCGCC--- 82 * * * * ** * * * * consensus_14362#2 ------------CTCC-GGTGGCCACCTTCTCCCC----GGCTTTTGGAGGAAGTCTGAG 187 consensus_14362#3 GGCAGTTGACTCCTCC-GGTGGTCACCTTCTCCCC----TGCTTTGGGAGGAAGTCTGAG 155 consensus_14362#1 TACAACTGAAAACTGAAGGAAACTTCTTTCTTCTTTACAGGCTTTGGGAGGAAGTCTGAG 459 consensus_14362#0 -----------GCCCTCATCAACATCGCGCGCGTCAACGACCCGCCGGTGCGCAACACGC 572 consensus_14362#4 -----------GCCCTCATCAACATCGCGCGCGTCAACGACCCGCCGGTGCGCAACACGC 131 * * * * ** * * consensus_14362#2 AGGATGGTGGTTCAGATACAGAGTGAATGAGCAAACATG-TACAAGATGATGGCTTTTTG 246 consensus_14362#3 AGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATG-TACAAGATGATGGCTTTT-G 213 consensus_14362#1 AGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATG-TACAAGATGATGGCTTTT-G 517 consensus_14362#0 AGGA-GGCCTTCCAGATGGACATGCGCGGCTCCCGCATGGTACATTCAGCTGATTCTCTG 631 consensus_14362#4 AGGA-GGCCTTCCAGATGGACATGCGCGGCTCCCGCATGGTACATTCAGCTGATTCTCTG 190 **** ** * ***** * * * * **** **** * ** * * * consensus_14362#2 CAGGAGCAACAAATGTTGATCTCTGAACC-TTGTATATTGCTGATGTAACCATTTGGTCT 305 consensus_14362#3 CAGGAGCAACAAATGTTGATCTCTGAACCATTGTATATTGCTGATGTAACCATTTGGTCT 273 consensus_14362#1 CAGGAGCAACAAATGTTGATCTTTGAACCATTGTATATTGCTGATGTAACCATTTGGTCA 577 consensus_14362#0 TTGAAACTAGTGTCAGAGCTTAAGAGAACAGCTATCTTTTCTGGGCTTGCTTCTTTAACT 691 consensus_14362#4 TTGAAACTAGTGTCAGAGCTTAAGAGAACAGCTATCTTTTCTGGGCTTGCTTCTTTAACT 250 * * * * * * * * ** *** * * ** * consensus_14362#2 GGGAGTCCTGGTGTGGCAGCTCACATTTATTTTTA-TAGCTCAAGTGAATCATGACATAG 364 consensus_14362#3 AGGAGTG--GGTGTGGCAGCTCACATTTATTTTTA-TAGCTCAAGTGAATCATGACATAG 330 consensus_14362#1 AGGAGTCCTGGTGTGGCAGCTCACATTTATTTTTA-TAGCTCAAGTGAATCATGACATAG 636 consensus_14362#0 GAAAATGTGGATAGGCGGATTGAAATCTTTAGTCAACAAGTTGAAGGAACAGAGAGAATG 751 consensus_14362#4 GAAAATGTGGATAGGCGGATTGAAATCTTTAGTCAACAAGTTGAAGGAACAGAGAGAATG 310 * * * * * * * ** * * * * * * * *** ** * * consensus_14362#2 TTTCATCTTTTTCTTTTTTTATTGTCA---AATTTCACTACTATGACTGTATTTAGTTGT 421 consensus_14362#3 TTTCATCTTTTTCTTTTTTTATTTTCA---AATTTCACTACTATGACTGTATTTAGTTGT 387 consensus_14362#1 TTTCATCTTTTTCTTTTTTTATTGTCA---AATTTCACTACTATGACTGTATTTAGTTGT 693 consensus_14362#0 CTGGAGAGGATTGGGCAGGAAGCAGCAGGAAGCCTCAAAGAGTTGGAGGCACATTACTAC 811 consensus_14362#4 CTGGAGAGGATTGGGCAGGAAGCAGCAGGAAGCCTCAAAGAGTTGGAGGCACATTACTAC 370 * * ** * ** * *** ** * * * * consensus_14362#2 CTCTGTATTTGTCAGTGACCTCAAGCTTTGTTGGGTGA-TGCCTCCTTGCCTTAAACCGG 480 consensus_14362#3 CTCTGTATTGTCAAGTGACCTCAAGCTTTGTTGGGTGA-TGCCTCCTTGCCTTAAACCGG 446 consensus_14362#1 CTCTGTATTGTCAAGTGACCTCAAGCTTTGTTGGGTGA-TGCCTCCTTGCCTTAAACCGG 752 consensus_14362#0 TCATCTGTTGTGCGAACACCACCGGATGAATGAGGCT--TTGGGAGGAAGTCTGAGAGGA 869 consensus_14362#4 TCATCTGTTGTGCGAACACCACCGGATGAATGAGGTAAATTCTACCTTTCTCTGAGTGAA 430 * * ** *** * * * * ** * * * consensus_14362#2 ATACAGGCCTTGATGATACTGCAATATTTTTGTTTTAATGATTAATCA-TGTGATTTTCG 539 consensus_14362#3 ATACAGGCCTTGATGATACTGCAATAATTTTGTTTTAATGATTAATCAATGTGGTTTTCG 506 consensus_14362#1 ATACAGGCCTTGATGATACTGCAATATTTTTGTTTTAATGATTAATCAATGTGGTTTTCG 812 consensus_14362#0 TGGTGGTTCAGATACAG--AG-TGAATGAGCAGACATGTACAAGATGATGGCTTTTTGCA 926 consensus_14362#4 AGATGTTTCCTTCTAAT--TGCTGGAGGTGCG---------------------------- 460 * * * * consensus_14362#2 CGTAAAAA---------------------------------------------------- 547 consensus_14362#3 CGTAAAAAA--------------------------------------------------- 515 consensus_14362#1 CGTA-------------------------------------------------------- 816 consensus_14362#0 GGAGCAACAAATGTTGATCTCTGAACCATTGTATATTGCTGATGTAACCATTTGGTCAAG 986 consensus_14362#4 ------------------------------------------------------------ consensus_14362#2 ------------------------------------------------------------ consensus_14362#3 ------------------------------------------------------------ consensus_14362#1 ------------------------------------------------------------ consensus_14362#0 GAGTCCTGGTGTGGCAGCTCACATTTATTTTTATAGCTCAAGTGAATCATGACATAGTTT 1046 consensus_14362#4 ------------------------------------------------------------ consensus_14362#2 ------------------------------------------------------------ consensus_14362#3 ------------------------------------------------------------ consensus_14362#1 ------------------------------------------------------------ consensus_14362#0 CATCTTTTTCTTTTTTTATTGTCAAATTTCACTACTATGACTGTATTTAGTTGTCTCTGT 1106 consensus_14362#4 ------------------------------------------------------------ consensus_14362#2 ------------------------------------------------------------ consensus_14362#3 ------------------------------------------------------------ consensus_14362#1 ------------------------------------------------------------ consensus_14362#0 ATTGTCAAGTGACCTCAAGCTTTGTTGGGTGATGCCTCCTTGCCTTAAACCGGATACAGG 1166 consensus_14362#4 ------------------------------------------------------------ consensus_14362#2 ------------------------------------------------------------ consensus_14362#3 ------------------------------------------------------------ consensus_14362#1 ------------------------------------------------------------ consensus_14362#0 CCTTGATGATACTGCAATATTTAGGTTTTAATGATTAATCAATGTGGTTTTCGCGTACCA 1226 consensus_14362#4 ------------------------------------------------------------ consensus_14362#2 ------- consensus_14362#3 ------- consensus_14362#1 ------- consensus_14362#0 TAAAGGG 1233 consensus_14362#4 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||