Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 14363 cluster # 14363       Sequences # 16       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14363#0 length = 1926 sequences # 13  
consensus_14363#1 length = 350 sequences # 1  
consensus_14363#2 length = 345 sequences # 1  
consensus_14363#3 length = 293 sequences # 1  

consensusID : consensus_14363#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 1926
fasta sequence
                              [AAAAAAAAGAAAAGAAAAAAAGAGAGGAAGAAAACGAGAAAAATCTCACCTTCCTCTTCCTCCGTTATCTAGCTCGATCCCCGCAAGAAATTCGCCCCGGAATCTCTCGATCCGCTCGATCCATTCCCCCGATCTGTCGATCGTTCCTTGCGAACCCTCGGTTCCCGGGGTCCCGATCCGGTCTTCGCCGCGTCGCCGTCGCCGCCGGAGTCGGAGTCGGAGTCGGAGGGGGAGGAGATGAACGGCGCCGGCGGGAACCACCAGCAGCAGCAGC-AGCAGCAGCAGCGGCTCAGGCAGCAGCAGCAGCAGCAGGCCCTCCTGATGCAGCAGGCGCTGCAGCAGCAGCAGCAG-TACCAGTCC-GGCGTCCTCGCCG-CCG-CCGCCGCGGCGGCCATGACCCAGATGGAGCCTATTTCAAATGGCAATCTTCCACCAGGGTTTGATCCATCCACATGTCGCAGTGTGTATGTTGGGAATGTGCACCCTAATGTTACTGAGAGCCTTCTAATCGAAGTTTTCCAGAGTTCTGGCCTTGTGGAAAGATGCAAGCTCATCCGGAAGGAGAAGTCTTCCTTTGGTTTTGTTGACTATTATGATCGGAGGTCAGCGGCTCTTGCAATAATGACCCTTCATGGTCGTCACATATGTGGCCAAGCAATCAAGGTGAACTGGGCTTATGCAAGTACACAGAGGGAGGATACATCTGGGCATTTCCATATTTTTGTTGGTGATTTAAGTTCTGAAGTGAATGATGCAACTCTTTATGCCTGTTTCTCAGCATATCCTTCTTGTTCTGATGCTCGAGTCATGTGGGATAACAAAACCGGACGCTCCAGAGGTTATGGTTTTGTCTCCTTCCGTAATCAACAGGAAGCTGAGACTGCTATAACTGAAATGACTGGGAAATGGCTTGGAAGCAGACAAATAAGGTGTAATTGGGCAACAAAGAACAATGCAGAAGAGAAACAAGAAACTGACAACCATAATGCAGTTGTACTAACAAATGGTAGTTCTAGTAATCCAGGAATGGAGGCAAGTCAGGACACCGGAAGTAAAGAGAATCCAGAGAACAACCCTGATTGTACTACGGTGTATGTTGGCAACCTTGGACATGAGGTTAACCGAGATGAGCTTCACCGCCACTTCTATAATTTAGGTGTTGGGGCTATTGAGGAAGTTCGCGTTCAACAGGATAAAGGATTTGGGTTTGTGAGATACAGTAACCATGGCGAAGCAGCATTGGCTATTCAGATGGCCAATGGATTGGTAGTGCGTGGGAAGCCGATCAAGTGCTCATGGGGCAACAAACCTACCCCACCTGGTACATCCTCCAAGCCATTGCCACCGCCACTTCCTTCATATC-AACCC-GTACCAA-TGGCA-GGTGTGC-CAC-AAGG-TTTCTCGGCA-GCTGATATCGTAGCATATCAGAGGCAACTTACCTTAAGCCAGGTCGCAGCTGGGCAGATTGCTGGCCAGCATGGCCTTGCAGGTCAGGTATCC-GCAGGGC-TTCTTGCTGCTGGCTC-CCAGGCCCTCTACGA-CGGGTA-CC-CGA-A-CCA-GT-CA-T-CAGCGC-A-A-C-A-GCTTAT-GTAC-TACAACTA-GG-T-GCT-TAAGGAGGAGGAAGGCATTTGTAGTGTTCGGC-TTGT-TCGGCG-CAAGCCTGGCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTGCT-CCT-CTTCC-GGTTCACTGCTTGTCGCGGAATTGTGTTATTATCTTCTTATTATTGTTGTACTATTGACCATTTTCTTTTCTAATTTGGTCGAAGTAGTTCTCGC-CTTAACAGAGTAACAGATGTATTTGATGGAATGTGAATTTGCGATTGATC-AATGTAAC-TCTC-CTGATGCCCATCTGAGTATTGATTATTCA-CCTTGGGCAAAGAGGGCTAGTCTTATCATGTA----AAAAAAAAAA]

[+] EMBL C72407               [AAAAAAAAGAAAAGAAAAAAAGAGAGGAAGAAAACGAGAAAAATCTCACCTTCCTCTTCCTCCGTTATCTAGCTCGATCCCCGCAAGAAATTCGCCCCGGAATCTCTCGATCCGCTCGATCCATTCCCCCGATCTGTCGATCGTTCCTTGCGAACCCTCGGTTCCCGGGCNCCCGATCCGGTCTTCGCCGCGTCGCCGTCGCCGCCGGAGTCGGAGTCGGAGTCGGAGGGGGAGGAGATGAACGGCGCCGGCGGGAACCACCAGCAtc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AK069912             [               AAAAAAGAGAGGAAGAAAACGAGAAAAATCTCACCTTCCTCTTCCTCCGTTATCTAGCTCGATCCCCGCAAGAAATTCGCCCCGGAATCTCTCGATCCGCTCGATCCATTCCCCCGATCTGTCGATCGTTCCTTGCGAACCCTCGGTTCCCGGGGTCCCGATCCGGTCTTCGCCGCGTCGCCGTCGCCGCCGGAGTCGGAGTCGGAGTCGGAGGGGGAGGAGATGAACGGCGCCGGCGGGAACCACCAGCAGCAGCAGC AGCAGCAGCAGCGGCTCAGGCAGCAGCAGCAGCAGCAGGCCCTCCTGATGCAGCAGGCGCTGCAGCAGCAGCAGCAG TACCAGTCC GGCGTCCTCGCCG CCG CCGCCGCGGCGGCCATGACCCAGATGGAGCCTATTTCAAATGGCAATCTTCCACCAGGGTTTGATCCATCCACATGTCGCAGTGTGTATGTTGGGAATGTGCACCCTAATGTTACTGAGAGCCTTCTAATCGAAGTTTTCCAGAGTTCTGGCCTTGTGGAAAGATGCAAGCTCATCCGGAAGGAGAAGTCTTCCTTTGGTTTTGTTGACTATTATGATCGGAGGTCAGCGGCTCTTGCAATAATGACCCTTCATGGTCGTCACATATGTGGCCAAGCAATCAAGGTGAACTGGGCTTATGCAAGTACACAGAGGGAGGATACATCTGGGCATTTCCATATTTTTGTTGGTGATTTAAGTTCTGAAGTGAATGATGCAACTCTTTATGCCTGTTTCTCAGCATATCCTTCTTGTTCTGATGCTCGAGTCATGTGGGATAACAAAACCGGACGCTCCAGAGGTTATGGTTTTGTCTCCTTCCGTAATCAACAGGAAGCTGAGACTGCTATAACTGAAATGACTGGGAAATGGCTTGGAAGCAGACAAATAAGGTGTAATTGGGCAACAAAGAACAATGCAGAAGAGAAACAAGAAACTGACAACCATAATGCAGTTGTACTAACAAATGGTAGTTCTAGTAATCCAGGAATGGAGGCAAGTCAGGACACCGGAAGTAAAGAGAATCCAGAGAACAACCCTGATTGTACTACGGTGTATGTTGGCAACCTTGGACATGAGGTTAACCGAGATGAGCTTCACCGCCACTTCTATAATTTAGGTGTTGGGGCTATTGAGGAAGTTCGCGTTCAACAGGATAAAGGATTTGGGTTTGTGAGATACAGTAACCATGGCGAAGCAGCATTGGCTATTCAGATGGCCAATGGATTGGTAGTGCGTGGGAAGCCGATCAAGTGCTCATGGGGCAACAAACCTACCCCACCTGGTACATCCTCCAAGCCATTGCCACCGCCACTTCCTTCATATC AACCC GTACCAA TGGCA GGTGTGC CAC AAGG TTTCTCGGCA GCTGATATCGTAGCATATCAGAGGCAACTTACCTTAAGCCAGGTCGCAGCTGGGCAGATTGCTGGCCAGCATGGCCTTGCAGGTCAGGTATCC GCAGGGC TTCTTGCTGCTGGCTC CCAGGCCCTCTACGA CGGGTA CC CGA A CCA GT CA T CAGCGC A A C A GCTTAT GTAC TACAACTA GG T GCT TAAGGAGGAGGAAGGCATTTGTAGTGTTCGGC TTGT TCGGCG CAAGCCTGGCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTGCT CCT CTTCC GGTTCACTGCTTGTCGCGGAATTGTGTTATTATCTTCTTATTATTGTTGTACTATTGACCATTTTCTTTTCTAATTTGGTCGAAGTAGTTCTCGC CTTAACAGAGTAACAGATGTATTTGATGGAATGTGAATTTGCGATTGATC AATGTAAC TCTC CTGATGCCCATCTGAGTA                                                          ]
[+] EMBL C73764               [                                        AAATCTCACCTTCCTCTTCCTCCGTTATCTAGCTCGATCCCCGCAAGAAATTCGCCCCGGAATCTCTCGATCCGCTCGATCCATTCCCCCGATCTGTCGATCGTTCCTTGCGAACCCTCGGTTCCCGGGGTCCCGATCCGGTCTTCGCCGCGTCGCCGTCGCCGCCGGAGTCGGAGTCGGAGTCGGAGGGGGAGGAGATGAACGGCGCCGGCGGGAACCACCAGCAGCAGCAGCAAGCAGCAGCAGCGGCTCAGGCAGCAGCAGCAGCAGCAGGCCCTTCTGATGCAGCAGGCGTTCAAGCAGCAGCAGCAGTTACCAGTCCGGGGGTCCTTGCCGNCCGNCGGCCG GGGGGCCcaatt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL C72397               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGACAAATAAGGTGTAATTGGGCAACAAAGAACAATGCAGAAGAGAAACAAGAAACTGACAACCATAATGCAGTTGTACTAACAAATGGTAGTTCTAGTAATCCAGGAATGGAGGCAAGTCAGGACACCGGAAGTAAAGAGAATCCAGAGAACAACCCTGATTGTACTACGGTGTATGTTGGCAACCTTGGACATGAGGTTAACCGAGATGAGCTTCACCGCCACTTCTATAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CB618706             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CAACCTTGGACATGAGGTTAACCGAGATGAGCTTCACCGCCACTTCTATAATTTAGGTGTTGGGGCTATTGAGGAAGTTCGCGTTCAACAGGATAAAGGATTTGGGTTTGTGAGATACAGTAACCATGGCGAAGCAGCATTGGCTATTCAGATGGCCAATGGATTGGTAGTGCGTGGGAAGCCGATCAAGTGCTCATGGGGCAACAAACCTACCCCACCTGGTACATCCTCCAAGCCATTGCCACCGCCACTTCCTTCATATC AACCC GTACCAA TGGCA GGTGTGC CAC AAGG TTTCTCGGCA GCTGATATCGTAGCATATCAGAGGCAACTTACCTTAAGCCAGGTCGCAGCTGGGCAGATTGCTGGCCAGCATGGCCTTGCAGGTCAGGTATCC GCAGGGC TTCTTGCTGCTGGCTC CCAGGCCCTCTACGA CGGGTA CC CGA A CCA GT CA T CAGCGC A A C A GCTTAT GTAC TACAACTA GG T GCT TAAGGAGGAGGAAGGCATTTGTAGTGTTCGGC TTGT TCGGCG CAAGCCTGGCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTG       CTTCC GGTTCACTGCTTGTCGCGGAATTGTGTTATTATCTTCTGATTATTGTTGTACTATTGACCATTTTCTTTTCTAATTTGGTCGAAGTAGTTCTCGC CTTAACAGAGTTACAGAGGTATTTGATGGAATGTGAA                                                                                                        ]
[+] EMBL CA764848             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTTTGTGAGATACAGTAACCCTGGCGAAGCAGCATTGGCTCTTCAGATGGCCAATGGATTGGTAGTGCGTGGGAAGCCGATCAAGTGCCCATGGGGCAACAAACCTACCCCACCTGGTACATCCTCCAAGCCATTGCCACCGCCACTTCCTTCATATC AACCC GTACCAA TGGCA GGTGTGC CAC AGGG TTTCTCGGCA GCTGATATCGTAGCATATCAGAGGCAACTTACCTTAAGCCAGGTCGCAGCTGGGCAGATTGCTGGCCAGCATGGCCTTGCAGGTCAGGTATCC GCAGGGC TTCTTGCTGCTGGCTC CCAGGCCCTCTACGA CGGGTA CC CGA A CCA GT CA T CAGCGC A A C A GCTTAT GTAC TACAACTA GG T GCT TAAGGGGGAGGAAGGCATTTGTAGTGTTCGGC TTGT TCGGCG CAAGCCTGGCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTGCT CCT CTTCC GGCTCACTGCTTGTCGCGGAATTGTGTTATTATCTTCTTATTATTGTTGTACTATTGACCATTTTCTTTTCTAATTTGGTCGAAGTAGTTCTCGC CTTAACAGAGTAACAGATGTATTTGATGGAATGTGAATTTG                                                                                                    ]
[+] EMBL CF195916             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TATC AACCC GTACCAA TGGCA GGTGTGC CAC AAGG TTTCTCGGCA GCTGATATCGTAGCATATCAGAGGCAACTTACCTTAAGCCAGGTCGCAGCTGGGCAGATTGCTGGCCAGCATGGCCTTGCAGGTCAGGTATCC GCAGGGC TTCTTGCTGCTGGCTC CCAGGCCCTCTACGA CGGGTA CC CGA A CCA GT CA T CAGCGC A A C A GCTTAT GTAC TACAACTA GG T GCT TAAGGAGGAGGAAGGCATTTGTAGTGTTCGGC TTGT TCGGCG CAAGCCTGGCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTGCT CCT CTTCC GGTTCACTGCTTGTCGCGGAATTn                                                                                                                                                                                                                     ]
[+] EMBL BQ908515             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            tcaatgATCAAACCCGGTACCAATTGGCAGGGTGTNCACACAAAGGTTTTNTC GCA  CTGATATCGTAGCATATCAGAGNCAACTTACCTTAAGCCA GTC CA CT GGCAGATTGCTGGCCAGCATGNCCTTGCAGGTCAGGTATCC GCAGGGC TTCTTGCTGCTGGCTC CCAGGCCCTTTACGA CGGGTA CC CGA A CCA GT CA T CAGCGC A A C A GCTTAT GTAC TACAACTA GG T GCT TAAGGAGGAGGAAGGCATTTGTAGTGTTCGGC TTGT TCGGCGACAAGCCTGNCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTGCT CCT CTTCC GGTTCACTGCTTGTCGCGGAATTGTGTTATTATCTTCTTATTATTGTTGTACTATTGACCATTTTCTTTTCTAATTTGGTCGAAGTAGTTCTC C CTTAACAGAGTAACAGATGTATTTGATGGAATGTGAATTTGCGATTGATC AATGTAAC TCTC CTGATGCCCATCTGAGTATTGATTATTCA CCTTGGGCAAAGAGGGCTAGTCTTATCATGTA    gccaaa    ]
[+] EMBL BI808173             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AA TGGCA GGTGTGC CAC AAGT TTTCTC GCACGCTGATATCGTAGCATATCAGA GCAACTTACCTTAAGCCA GTCGCA CT GGCAGATTGCTGGCCAGCAT GCCTTGCAGGTCAGGTATCC GCAGGGC TTCTTGCTGCTGGCTC CCAGGCCCTCTACGA CGGGTA CC CGA A CCA GT CA T CAGCGC A A C A GCTTAT GTAC TACAACTA GG T GCT TAAGGAGGAGGAAGGCATTTGTAGTGTTCGGC TTGT TCGGCG CAAGCCTGGCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTGCT CCT CTTCC GGTTCACTGCTTGTCGCGGAATTGTGTTATTATCTTCTTATTATTGTTGTACTATTGACCATTTTCTTTTCTAATTTGGTCGAAGTAGTTCTCGC CTTAACAGAGTAACAGATGTATTTGATGGAATGTGAATTTGCGATTGATC AATGTAAC TCTC CTGATGCCCATCTGAGTATTGATTATTCACCCTTGGGCAAAGAGGGCTAGTCTTATCATGTA    AAAAAAAAA ]
[+] EMBL AU182277             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTAGCATATCAGAGGCAACTTACCTTAAGCCAGGTCGCAGCTGGGCAGATTGCTGGCCAGCATGGCCTTGCAGGTCAGGTATCC GCAGGGC TTCTTGCTGCTGGCTC CCAGGCCCTCTACGA CGGGTA CC CGA A CCA GT CA T CAGCGC A A C A GCTTAT GTAC TACAACTA GG T GCT TAAGGAGGAGGAAGGCATTTGTAGTGTTCGGC TTGT TCGGCG CAAGCCTGGCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTGCT CCT CTTCC GGTTCACTGCTTGTCGCGGAATTGTGTTATTATCTTCTTATTATTGTTGTACTATTGACCATTTTCTTTTCTAATTTGGTCGAAGTAGTTCTCGC CTTAACAGAGTAACAGATGTATTTGATGGAATGTGAATTTGCGATTGATC AATGTAAaaaa                                                                               ]
[+] EMBL BQ908491             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AGGTATCC GCAGGGC TTCTTGCTGCTGGCTC CCAGGCCCTCTACGACCGGGTATCCTCGANATCCACGT CACT CAGCGC ACACC ACGCTTATCGTAC TACAACTACGGCT GCT TAAGGAGGAGGAAGGCATTTGTAGTGTTCGGC TTGT TCGGCG CAAGCCTGGCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTGCT CCT CTTCC GGTTCACTGCTTGTCGCGGAATTGTGTTATTATCTTCTTATTATTGTTGTACTATTGACCATTTTCTTTTCTAATTTGGTCGAAGTAGTTCTCGC CTTAACAGAGTAACAGATGTATTTGATGGAATGTGAATTTGCGATTGATC AATGTAAC TCTC CTGATGCCCATCTGAGTATTGATTATTCA CCTTGGGCAAAGAGGGCTAGTCTTATCATGTA    AAAAA     ]
[+] EMBL BI811646             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ATCCAGCAGGGCTTTCTTGCTGCTGGCTCACCAGGCCCTCTACGA CGGGTA CC CGA A CCA GT CA T CAGCGCAA A CAA GCTTAT GTACGTACAACTA GG T GCT TAAGGAGGAGGAA GCATTTGTAGTGTTCGGCATTGT TCGGCG CAAGCCTGGCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTGCT CCT CTTCCAGGTTCACTGCTTGTCGCGGAATTGTGTTATTATCTTCTTATTATTGTTGTACTATTGACCATTTTCTTTTCTAATTTGGTCGAAGTAGTTCTCGCACTTAACAGAGTAACAGATGTATTTGATGGAATGTGAATTTGCGATTGATCAAATGTAACATCTCACTGATGCCCATCTGAGTATTGATTATTCA CCTTGGGCAAAGAGGGCTAGTCTTATCATGTAGCCCAAAAAAAAAA]
[+] EMBL AU078648             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              aA GTCCA TCCAGCGC A A C ACGCTTAT GTACTTACAACTA GG TCGCTCTAAGGAGGAGGAAGGCATTTGTAGTGTTCGGC TTGTNTCGGCG CAAGCCTGGCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTGCTNCCTNCTTCC GGTTCACTGCTTGTCGCGGAATTGTGTTATTATCTTCTTATTATTGTTGTACTATTGACCATTTTCTTTTCTAATTTGGTCGAAGTAGTTCTCGC CTTAACAGAGTAACAGATGTATTTGATGGAATGTGAATTTGCGATTGATC AATGTAAC TCTC CTGATGCCCAaaa                                                               ]


>consensus_14363#0 AAAAAAAAGAAAAGAAAAAAAGAGAGGAAGAAAACGAGAAAAATCTCACCTTCCTCTTCC TCCGTTATCTAGCTCGATCCCCGCAAGAAATTCGCCCCGGAATCTCTCGATCCGCTCGAT CCATTCCCCCGATCTGTCGATCGTTCCTTGCGAACCCTCGGTTCCCGGGGTCCCGATCCG GTCTTCGCCGCGTCGCCGTCGCCGCCGGAGTCGGAGTCGGAGTCGGAGGGGGAGGAGATG AACGGCGCCGGCGGGAACCACCAGCAGCAGCAGCAGCAGCAGCAGCGGCTCAGGCAGCAG CAGCAGCAGCAGGCCCTCCTGATGCAGCAGGCGCTGCAGCAGCAGCAGCAGTACCAGTCC GGCGTCCTCGCCGCCGCCGCCGCGGCGGCCATGACCCAGATGGAGCCTATTTCAAATGGC AATCTTCCACCAGGGTTTGATCCATCCACATGTCGCAGTGTGTATGTTGGGAATGTGCAC CCTAATGTTACTGAGAGCCTTCTAATCGAAGTTTTCCAGAGTTCTGGCCTTGTGGAAAGA TGCAAGCTCATCCGGAAGGAGAAGTCTTCCTTTGGTTTTGTTGACTATTATGATCGGAGG TCAGCGGCTCTTGCAATAATGACCCTTCATGGTCGTCACATATGTGGCCAAGCAATCAAG GTGAACTGGGCTTATGCAAGTACACAGAGGGAGGATACATCTGGGCATTTCCATATTTTT GTTGGTGATTTAAGTTCTGAAGTGAATGATGCAACTCTTTATGCCTGTTTCTCAGCATAT CCTTCTTGTTCTGATGCTCGAGTCATGTGGGATAACAAAACCGGACGCTCCAGAGGTTAT GGTTTTGTCTCCTTCCGTAATCAACAGGAAGCTGAGACTGCTATAACTGAAATGACTGGG AAATGGCTTGGAAGCAGACAAATAAGGTGTAATTGGGCAACAAAGAACAATGCAGAAGAG AAACAAGAAACTGACAACCATAATGCAGTTGTACTAACAAATGGTAGTTCTAGTAATCCA GGAATGGAGGCAAGTCAGGACACCGGAAGTAAAGAGAATCCAGAGAACAACCCTGATTGT ACTACGGTGTATGTTGGCAACCTTGGACATGAGGTTAACCGAGATGAGCTTCACCGCCAC TTCTATAATTTAGGTGTTGGGGCTATTGAGGAAGTTCGCGTTCAACAGGATAAAGGATTT GGGTTTGTGAGATACAGTAACCATGGCGAAGCAGCATTGGCTATTCAGATGGCCAATGGA TTGGTAGTGCGTGGGAAGCCGATCAAGTGCTCATGGGGCAACAAACCTACCCCACCTGGT ACATCCTCCAAGCCATTGCCACCGCCACTTCCTTCATATCAACCCGTACCAATGGCAGGT GTGCCACAAGGTTTCTCGGCAGCTGATATCGTAGCATATCAGAGGCAACTTACCTTAAGC CAGGTCGCAGCTGGGCAGATTGCTGGCCAGCATGGCCTTGCAGGTCAGGTATCCGCAGGG CTTCTTGCTGCTGGCTCCCAGGCCCTCTACGACGGGTACCCGAACCAGTCATCAGCGCAA CAGCTTATGTACTACAACTAGGTGCTTAAGGAGGAGGAAGGCATTTGTAGTGTTCGGCTT GTTCGGCGCAAGCCTGGCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTG AGTGAGTGCTCCTCTTCCGGTTCACTGCTTGTCGCGGAATTGTGTTATTATCTTCTTATT ATTGTTGTACTATTGACCATTTTCTTTTCTAATTTGGTCGAAGTAGTTCTCGCCTTAACA GAGTAACAGATGTATTTGATGGAATGTGAATTTGCGATTGATCAATGTAACTCTCCTGAT GCCCATCTGAGTATTGATTATTCACCTTGGGCAAAGAGGGCTAGTCTTATCATGTAAAAA AAAAAA



consensusID : consensus_14363#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 350
fasta sequence
                              [CGCAGGGTACCCCAACCAGTCAACAGCGCAACAGTCTTCNGTACTACAACTCAGGTGCTTAAGGAGGTAGGAAGGCATTTGTAGTGTTCGGCTTGTTNCGGCGCAAGCCTGGCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTGCTCCTCTTCCGGTTCACTGCTTGTCGCGGAATTGTGTTATTATCTTCTTATTATTGTTGTACTATTGACCATTTTCTTTTCTAATTTGGTCGAAGTAGTTCTCGCCTTAACAGAGTAACAGATGTATTTGATGGAATGTGAATTTGCGATTGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL C99552               [CGCAGGGTACCCCAACCAGTCAACAGCGCAACAGTCTTCNGTACTACAACTCAGGTGCTTAAGGAGGTAGGAAGGCATTTGTAGTGTTCGGCTTGTTNCGGCGCAAGCCTGGCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTGCTCCTCTTCCGGTTCACTGCTTGTCGCGGAATTGTGTTATTATCTTCTTATTATTGTTGTACTATTGACCATTTTCTTTTCTAATTTGGTCGAAGTAGTTCTCGCCTTAACAGAGTAACAGATGTATTTGATGGAATGTGAATTTGCGATTGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_14363#1 CGCAGGGTACCCCAACCAGTCAACAGCGCAACAGTCTTCNGTACTACAACTCAGGTGCTT AAGGAGGTAGGAAGGCATTTGTAGTGTTCGGCTTGTTNCGGCGCAAGCCTGGCCTTCCTC TTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTGCTCCTCTTCCGGTTCAC TGCTTGTCGCGGAATTGTGTTATTATCTTCTTATTATTGTTGTACTATTGACCATTTTCT TTTCTAATTTGGTCGAAGTAGTTCTCGCCTTAACAGAGTAACAGATGTATTTGATGGAAT GTGAATTTGCGATTGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_14363#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 345
fasta sequence
                              [GCGCCNGCCCGGGCAGGTACACAGAGGGAGGATACATCTGGGCATTTCCATATTTTTGTTGGTGATTTAAGTTCTGAAGTGAATGANGCAACTCTTTATGCCTGTTTCTCAGCATATCCTTCTTGTTCTGANGCTCGAGTCATGTGGGATAACAAAACCGGACGCTCCAGAGGTTATGGTTTTGTCTCCTTCCGTAATCAACAGGAAGCTNAGACTGCTATAACTGAAATGACTGGGAAATGGCTTGGAAGCAGACAAATAAGGTGTAATTGGGCAACAAAGAACAATGCAGAAGAGAAACANGAAACTGACAACCATAATGCAGTTGTACCCCGGCCGCGACCA]

[-] EMBL BM929248             [GCGCCNGCCCGGGCAGGTACACAGAGGGAGGATACATCTGGGCATTTCCATATTTTTGTTGGTGATTTAAGTTCTGAAGTGAATGANGCAACTCTTTATGCCTGTTTCTCAGCATATCCTTCTTGTTCTGANGCTCGAGTCATGTGGGATAACAAAACCGGACGCTCCAGAGGTTATGGTTTTGTCTCCTTCCGTAATCAACAGGAAGCTNAGACTGCTATAACTGAAATGACTGGGAAATGGCTTGGAAGCAGACAAATAAGGTGTAATTGGGCAACAAAGAACAATGCAGAAGAGAAACANGAAACTGACAACCATAATGCAGTTGTACCCCGGCCGCGACCA]


>consensus_14363#2 GCGCCNGCCCGGGCAGGTACACAGAGGGAGGATACATCTGGGCATTTCCATATTTTTGTT GGTGATTTAAGTTCTGAAGTGAATGANGCAACTCTTTATGCCTGTTTCTCAGCATATCCT TCTTGTTCTGANGCTCGAGTCATGTGGGATAACAAAACCGGACGCTCCAGAGGTTATGGT TTTGTCTCCTTCCGTAATCAACAGGAAGCTNAGACTGCTATAACTGAAATGACTGGGAAA TGGCTTGGAAGCAGACAAATAAGGTGTAATTGGGCAACAAAGAACAATGCAGAAGAGAAA CANGAAACTGACAACCATAATGCAGTTGTACCCCGGCCGCGACCA



consensusID : consensus_14363#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence
                              [ACCTTAAATTGATCATTTACTTATCTAACTTGTCAGGTTAACCGAGATGAGCTTCACCGCCACTTCTATAATTTAGGTGTTGGGGCTATTGTGGAAGTTCGCGTTCAACAGGATAAAGGATTTGGGTTTGTGAGATACAGTAACCATGGCGAAGCAGCATTGGCTATTCAGATGGCCAATGGATTGGTAGTGCGTGGGAAGCCGATCAAGGTATTGTCCAATTCAAATAAATATTATTTCGTCTGTTCTTTCAATTTTTTGCATGATTACTTATGCAATTCTCCATGAGCACT]

[-] EMBL CB001042             [ACCTTAAATTGATCATTTACTTATCTAACTTGTCAGGTTAACCGAGATGAGCTTCACCGCCACTTCTATAATTTAGGTGTTGGGGCTATTGTGGAAGTTCGCGTTCAACAGGATAAAGGATTTGGGTTTGTGAGATACAGTAACCATGGCGAAGCAGCATTGGCTATTCAGATGGCCAATGGATTGGTAGTGCGTGGGAAGCCGATCAAGGTATTGTCCAATTCAAATAAATATTATTTCGTCTGTTCTTTCAATTTTTTGCATGATTACTTATGCAATTCTCCATGAGCACT]


>consensus_14363#3 ACCTTAAATTGATCATTTACTTATCTAACTTGTCAGGTTAACCGAGATGAGCTTCACCGC CACTTCTATAATTTAGGTGTTGGGGCTATTGTGGAAGTTCGCGTTCAACAGGATAAAGGA TTTGGGTTTGTGAGATACAGTAACCATGGCGAAGCAGCATTGGCTATTCAGATGGCCAAT GGATTGGTAGTGCGTGGGAAGCCGATCAAGGTATTGTCCAATTCAAATAAATATTATTTC GTCTGTTCTTTCAATTTTTTGCATGATTACTTATGCAATTCTCCATGAGCACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14363#2      ------------------------------------------------------------
consensus_14363#3      ------------------------------------------------------------
consensus_14363#0      AAAAAAAAGAAAAGAAAAAAAGAGAGGAAGAAAACGAGAAAAATCTCACCTTCCTCTTCC 60
consensus_14363#1      ------------------------------------------------------------
                                                                                   

consensus_14363#2      ------------------------------------------------------------
consensus_14363#3      ------------------------------------------------------------
consensus_14363#0      TCCGTTATCTAGCTCGATCCCCGCAAGAAATTCGCCCCGGAATCTCTCGATCCGCTCGAT 120
consensus_14363#1      ------------------------------------------------------------
                                                                                   

consensus_14363#2      ------------------------------------------------------------
consensus_14363#3      ------------------------------------------------------------
consensus_14363#0      CCATTCCCCCGATCTGTCGATCGTTCCTTGCGAACCCTCGGTTCCCGGGGTCCCGATCCG 180
consensus_14363#1      ------------------------------------------------------------
                                                                                   

consensus_14363#2      ------------------------------------------------------------
consensus_14363#3      ------------------------------------------------------------
consensus_14363#0      GTCTTCGCCGCGTCGCCGTCGCCGCCGGAGTCGGAGTCGGAGTCGGAGGGGGAGGAGATG 240
consensus_14363#1      ------------------------------------------------------------
                                                                                   

consensus_14363#2      ------------------------------------------------------------
consensus_14363#3      ------------------------------------------------------------
consensus_14363#0      AACGGCGCCGGCGGGAACCACCAGCAGCAGCAGCAGCAGCAGCAGCGGCTCAGGCAGCAG 300
consensus_14363#1      ------------------------------------------------------------
                                                                                   

consensus_14363#2      ------------------------------------------------------------
consensus_14363#3      ------------------------------------------------------------
consensus_14363#0      CAGCAGCAGCAGGCCCTCCTGATGCAGCAGGCGCTGCAGCAGCAGCAGCAGTACCAGTCC 360
consensus_14363#1      ------------------------------------------------------------
                                                                                   

consensus_14363#2      ------------------------------------------------------------
consensus_14363#3      ------------------------------------------------------------
consensus_14363#0      GGCGTCCTCGCCGCCGCCGCCGCGGCGGCCATGACCCAGATGGAGCCTATTTCAAATGGC 420
consensus_14363#1      ------------------------------------------------------------
                                                                                   

consensus_14363#2      ------------------------------------------------------------
consensus_14363#3      ------------------------------------------------------------
consensus_14363#0      AATCTTCCACCAGGGTTTGATCCATCCACATGTCGCAGTGTGTATGTTGGGAATGTGCAC 480
consensus_14363#1      ------------------------------------------------------------
                                                                                   

consensus_14363#2      ------------------------------------------------------------
consensus_14363#3      ------------------------------------------------------------
consensus_14363#0      CCTAATGTTACTGAGAGCCTTCTAATCGAAGTTTTCCAGAGTTCTGGCCTTGTGGAAAGA 540
consensus_14363#1      ------------------------------------------------------------
                                                                                   

consensus_14363#2      ------------------------------------------------------------
consensus_14363#3      ------------------------------------------------------------
consensus_14363#0      TGCAAGCTCATCCGGAAGGAGAAGTCTTCCTTTGGTTTTGTTGACTATTATGATCGGAGG 600
consensus_14363#1      ------------------------------------------------------------
                                                                                   

consensus_14363#2      ------------------------------------------------------------
consensus_14363#3      ------------------------------------------------------------
consensus_14363#0      TCAGCGGCTCTTGCAATAATGACCCTTCATGGTCGTCACATATGTGGCCAAGCAATCAAG 660
consensus_14363#1      ------------------------------------------------------------
                                                                                   

consensus_14363#2      ---GCGCCNGCCCGGGCAGGTACACAGAGGGAGGATA---CATCTGGGCATTTCCATATT 54
consensus_14363#3      --------------------------------------------------------ACCT 4
consensus_14363#0      GTGAACTGGGCTTATGCAAGTACACAGAGGGAGGATA---CATCTGGGCATTTCCATATT 717
consensus_14363#1      -CGCAGGGTACCCCAACCAGTCAACAGCGCAACAGTCTTCNGTACTACAACTCAGGTGCT 59
                                                                                  *

consensus_14363#2      TTTGTTGGTGATTTAAGTTCTGAAGTGAATGANGCAACTCTTTATGCCTGTTTCTCAGCA 114
consensus_14363#3      TAAATTGATCATTTACTTATCTAACTTGTCAGGTTAACCG---AGATGAGCTTCACCGC- 60
consensus_14363#0      TTTGTTGGTGATTTAAGTTCTGAAGTGAATGATGCAACTCTTTATGCCTGTTTCTCAGCA 777
consensus_14363#1      TAAGGAGGTAGGAAGGCATTTGTAGTGTTCGGCTTGTTNCG--GCGCAAGCCTGGC--CT 115
                       *     * *              * *                       *  *  *  * 

consensus_14363#2      TATCCTTCTTGTTCTGANGCTCGAGTCATGTGGG-ATAACAAAACCGGACGCTCCAGAGG 173
consensus_14363#3      CACTTCTATAATTTAGGTGTTGGGGCTATTGTGG-AAGTTCGCGTTCAACAGGATAAAGG 119
consensus_14363#0      TATCCTTCTTGTTCTGATGCTCGAGTCATGTGGG-ATAACAAAACCGGACGCTCCAGAGG 836
consensus_14363#1      TCCTCTTTCGGTTCCTATTTTCTGGTTTCTGTACTATTTGAGTGAGTGCTCCTCTTCCGG 175
                             *    **       *   *          *                      **

consensus_14363#2      TTATGGTTTTGTCTCCTTCCGTAATCAACAGGAAGCTNAGACTGCTAT--AACTGA--AA 229
consensus_14363#3      ATTTGGGTTTGTGAGATACAGTAACCATGGCGAAGCAGCATTGGCTATTCAGATGGCCAA 179
consensus_14363#0      TTATGGTTTTGTCTCCTTCCGTAATCAACAGGAAGCTGAGACTGCTAT--AACTGA--AA 892
consensus_14363#1      TTCACTGCTTGTCGCGGAATTGTGTTATTATCTTCTTATTATTGTTGTACTATTGACCAT 235
                        *      ****              *                * * *     **   * 

consensus_14363#2      TGACTGGG-AAATGGCTTGGAAGCAGACAAATAAGGTGTAATTGGGCAACA-AAGAACAA 287
consensus_14363#3      TGGATTGG-TAGTGCGTGGGAAGCCGAT---CAAGGTATTGTCCAATTCAA-ATAAATAT 234
consensus_14363#0      TGACTGGG-AAATGGCTTGGAAGCAGACAAATAAGGTGTAATTGGGCAACA-AAGAACAA 950
consensus_14363#1      TTTCTTTTCTAATTTGGTCGAAGTAGTT---CTCGCCTTAACAGAGTAACAGATGTATTT 292
                       *   *     * *      ****  *        *   *           * *   *   

consensus_14363#2      TGCAGAAGAGAAACANGAAACTGACAACCATAATGCAGTTGTACCC-CGGCCGCGACCA- 345
consensus_14363#3      TATTTCGTCTGTTCTTTCAATTTTTTGCATGATTACTTATGCAATT-CT-CCATGAGCAC 292
consensus_14363#0      TGCAGAAGAGAAACAAGAAACTGACAACCATAATGCAGTTGTACTAACAAATGGTAGTTC 1010
consensus_14363#1      GATGGAATGTGAATTTGCGATTGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-- 350
                                          * *         *          *            *    

consensus_14363#2      ------------------------------------------------------------
consensus_14363#3      T----------------------------------------------------------- 293
consensus_14363#0      TAGTAATCCAGGAATGGAGGCAAGTCAGGACACCGGAAGTAAAGAGAATCCAGAGAACAA 1070
consensus_14363#1      ------------------------------------------------------------
                                                                                   

consensus_14363#2      ------------------------------------------------------------
consensus_14363#3      ------------------------------------------------------------
consensus_14363#0      CCCTGATTGTACTACGGTGTATGTTGGCAACCTTGGACATGAGGTTAACCGAGATGAGCT 1130
consensus_14363#1      ------------------------------------------------------------
                                                                                   

consensus_14363#2      ------------------------------------------------------------
consensus_14363#3      ------------------------------------------------------------
consensus_14363#0      TCACCGCCACTTCTATAATTTAGGTGTTGGGGCTATTGAGGAAGTTCGCGTTCAACAGGA 1190
consensus_14363#1      ------------------------------------------------------------
                                                                                   

consensus_14363#2      ------------------------------------------------------------
consensus_14363#3      ------------------------------------------------------------
consensus_14363#0      TAAAGGATTTGGGTTTGTGAGATACAGTAACCATGGCGAAGCAGCATTGGCTATTCAGAT 1250
consensus_14363#1      ------------------------------------------------------------
                                                                                   

consensus_14363#2      ------------------------------------------------------------
consensus_14363#3      ------------------------------------------------------------
consensus_14363#0      GGCCAATGGATTGGTAGTGCGTGGGAAGCCGATCAAGTGCTCATGGGGCAACAAACCTAC 1310
consensus_14363#1      ------------------------------------------------------------
                                                                                   

consensus_14363#2      ------------------------------------------------------------
consensus_14363#3      ------------------------------------------------------------
consensus_14363#0      CCCACCTGGTACATCCTCCAAGCCATTGCCACCGCCACTTCCTTCATATCAACCCGTACC 1370
consensus_14363#1      ------------------------------------------------------------
                                                                                   

consensus_14363#2      ------------------------------------------------------------
consensus_14363#3      ------------------------------------------------------------
consensus_14363#0      AATGGCAGGTGTGCCACAAGGTTTCTCGGCAGCTGATATCGTAGCATATCAGAGGCAACT 1430
consensus_14363#1      ------------------------------------------------------------
                                                                                   

consensus_14363#2      ------------------------------------------------------------
consensus_14363#3      ------------------------------------------------------------
consensus_14363#0      TACCTTAAGCCAGGTCGCAGCTGGGCAGATTGCTGGCCAGCATGGCCTTGCAGGTCAGGT 1490
consensus_14363#1      ------------------------------------------------------------
                                                                                   

consensus_14363#2      ------------------------------------------------------------
consensus_14363#3      ------------------------------------------------------------
consensus_14363#0      ATCCGCAGGGCTTCTTGCTGCTGGCTCCCAGGCCCTCTACGACGGGTACCCGAACCAGTC 1550
consensus_14363#1      ------------------------------------------------------------
                                                                                   

consensus_14363#2      ------------------------------------------------------------
consensus_14363#3      ------------------------------------------------------------
consensus_14363#0      ATCAGCGCAACAGCTTATGTACTACAACTAGGTGCTTAAGGAGGAGGAAGGCATTTGTAG 1610
consensus_14363#1      ------------------------------------------------------------
                                                                                   

consensus_14363#2      ------------------------------------------------------------
consensus_14363#3      ------------------------------------------------------------
consensus_14363#0      TGTTCGGCTTGTTCGGCGCAAGCCTGGCCTTCCTCTTTCGGTTCCTATTTTCTGGTTTCT 1670
consensus_14363#1      ------------------------------------------------------------
                                                                                   

consensus_14363#2      ------------------------------------------------------------
consensus_14363#3      ------------------------------------------------------------
consensus_14363#0      GTACTATTTGAGTGAGTGCTCCTCTTCCGGTTCACTGCTTGTCGCGGAATTGTGTTATTA 1730
consensus_14363#1      ------------------------------------------------------------
                                                                                   

consensus_14363#2      ------------------------------------------------------------
consensus_14363#3      ------------------------------------------------------------
consensus_14363#0      TCTTCTTATTATTGTTGTACTATTGACCATTTTCTTTTCTAATTTGGTCGAAGTAGTTCT 1790
consensus_14363#1      ------------------------------------------------------------
                                                                                   

consensus_14363#2      ------------------------------------------------------------
consensus_14363#3      ------------------------------------------------------------
consensus_14363#0      CGCCTTAACAGAGTAACAGATGTATTTGATGGAATGTGAATTTGCGATTGATCAATGTAA 1850
consensus_14363#1      ------------------------------------------------------------
                                                                                   

consensus_14363#2      ------------------------------------------------------------
consensus_14363#3      ------------------------------------------------------------
consensus_14363#0      CTCTCCTGATGCCCATCTGAGTATTGATTATTCACCTTGGGCAAAGAGGGCTAGTCTTAT 1910
consensus_14363#1      ------------------------------------------------------------
                                                                                   

consensus_14363#2      ----------------
consensus_14363#3      ----------------
consensus_14363#0      CATGTAAAAAAAAAAA 1926
consensus_14363#1      ----------------
                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)