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Oryza sativa
cluster # 14365 cluster # 14365       Sequences # 16       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14365#0 length = 999 sequences # 12  
consensus_14365#1 length = 482 sequences # 1  
consensus_14365#2 length = 364 sequences # 2  
consensus_14365#3 length = 276 sequences # 1  

consensusID : consensus_14365#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 999
fasta sequence
                              [TGAAACTCTCAGTATAAAAGGACCCTGCAGCCTGATCCCCTGTCAATACAACCAGCTGCACGCCCATTCGT-CTCAAACACACATTCTTTGATTCTTCCTTCAATTTCCCCTTTTCAACTCTGTCATCAACTTAATTGTTAGAAGCGACCTAAAGATTTTGCGGCCGATCGAGCATGGCGTCCCCTTCGGCTCTGATCGCAATGCTCCTCG-TCATGGTCGTCGGCTGCGCCGCCGTGGCCTCGGCGATGGAGCTGAGTTTCATTGTCGGAGATGCGCAGGGTTGGAACACCGGCGTCGACTACACCGCTTGGGCGAAGGGCAAAACCTTCGAGGCTAACGACACGCTTGTATTCAGATACGCCAGGAAGCAGCACACGGTGACAGAGGTGACCAAGAGCGACTACGACGCCTGCACCGTCAGCGGCAAACCGATCAGTGATTTCGAAGGAGGCGCGCTTGTGACATTCATAGCGCTCAGCCCCGGCGAGCACTACTTCATCTGCAAAATCGGCAACCATTGCGCCAGCGGCATGAA-G-CTCGCCGTCACCGTCTCCAACTCCAGCGACACCCCGAGGCCGCAACCTTGGATTGGGCCTTACTCCACGCCAGCCAGCGCGTCCGCACACCTGCACGCCGGTGGCGCCGTCGT-CGCGGCGGCCGTTGGGATCCTCCTCAATCTCGCCCTCTTCTGAGATCGCATTGACGCGTCGAGCGGCATGGACGTTGGCAGGGTGGAGGCAATGCATGATTCTTTGTAGCGTTTCTGATGAAATTTGTTTGATTATTTTGTTTACGTTCGATCGTGTATACGTGCGTAATAATGATTTATTGGTCTTGTGATTTATTTTCTCCTTATATTCATTTGTATATCCTCTGATATAATTTTCTGTACATCTCAGCATTCTGTATGCCATTCAGTGATGTAGGTTAGAGTAACAAAGAACTTTGCTGTGATGTCTTTATANTAAAAAAAAAGTGAACTCGTTATCCTTCAAAAAA]

[+] EMBL CF335936             [TGAAACTCTCAGTATAAAAGGACCCTGCAGCCTGATCCCCTGTCAATACAACCAGCTGCACGCCCATTCGT CTCAAACACACATTCTTTGATTCTTCCTTCAATTTCCCCTTTTCAACTCTGTCATCAACTTAATTGTTAGAAGCGACCTAAAGATTTTGCGGCCGATCGAGCATGGCGTCCCCTTCGGCTCTGATCGCAATGCTCCTCG TCATGGTCGTCGGCTGCGCCGCCGTGGCCTCGGCGATGGAGCTGAGTTTCATTGTCGGAGATGCGCAGGGTTGGAACACCGGCGTCGACTACACCGCTTGGGCGAAGGGCAAAACCTTCGAGGCTAACGACACGCTTGTATTCAGATACGCCAGGAAGCAGCACACGGTGACAGAGGTGACCAAGAGCGACTACGACGCCTGCACCGTCAGCGGCAAACCGATCAGTGATTTCGAAGGAGGCGCGCTTGTGACATTCATAGCGCTCAGCCCCGGCGAGCACTACTTCATCTGCAAAATCGGCAACCATTGCGCCAGCGGCATGAA G CTCGCCGTCACCGTCTCCAACTCCAGCGACACCCCGAGGCCGCAACCTTGGATTGGGCCTTACTCCACGCCAG                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CF316477             [                                      tagaaaAATACAACCAGCTGCACGCCCATTCGT CTCAAACACACATTCTTTGATTCTTCCTTCAATTTCCCCTTTTCAACTCTGTCATCAACTTAATTGTTAGAAGCGACCTAAAGATTTTGCGGCCGATCGAGCATGGCGTCCCCTTCGGCTCTGATCGCAATGCTCCTCG TCATGGTCGTCGGCTGCGCCGCCGTGGCCTCGGCGATGGAGCTGAGTTTCATTGTCGGAGATGCGCAGGGTTGGAACACCGGCGTCGACTACACCGCTTGGGCGAAGGGCAAAACCTTCGAGGCTAACGACACGCTTGTATTCAGATACGCCAGGAAGCAGCACACGGTGACAGAGGTGACCAAGAGCGACTACGACGCCTGCACCGTCAGCGGCAAACCGATCAGTGATTTCGAAGGAGGCGCGCTTGTGACATTCATAGCGCTCAGCCCCGGCGAGCACTACTTCATCTGCAAAATCGGCAACCATTGCGCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CF336461             [                                                    CAGCTGCACGCCCATTCGT CTCAAACACACATTCTTTGATTCTTCCTTCAATTTCCCCTTTTCAACTCTGTCATCAACTTAATTGTTAGAAGCGACCTAAAGATTTTGCGGCCGATCGAGCATGGCGTCCCCTTCGGCTCTGATCGCAATGCTCCTCG  C TGGTCGTCGGCTGCGCCGCCGTGGCCTCGGCGACGGAGCTGAGTTTCATTGTCGGAGATGCGCAGGGTTGGAACACCGGCGTCGACTACACCGCTTGGGCGAAGGGCAGAACCTTCGAGGCTAACGACACGCTTGTATTCAGATACGCCAGGAAGCAGCACACGGTGACAGAGGTGACCAAGAGCGACTACGACGCCTGCACCGTCAGCGGCAAACCGATCAGTGATTTCGAAGGAGGCGCGCTTGTGACATTCATAGCGCTCAGCCCCGGCGAGCACTACTTCATCTGCAAAATCGGCAACCATTGCGCCAGCGGCATGAA C TTCGCCGTCACCGTCTCCAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK063639             [                                                     AGCTGCACGCCCATTCGT CTCAAACACACATTCTTTGATTCTTCCTTCAATTTCCCCTTTTCAACTCTGTCATCAACTTAATTGTTAGAAGCGACCTAAAGATTTTGCGGCCGATCAAGCATGGCGTCCCCTTCGGCTCTGATCGCAATGCTCCTCG TCATGGTCGTCGGCTGCGCCGCCGTGGCCTCGGCGATGGAGCTGAGTTTCATTGTCGGAGATGCGCAGGGTTGGAACACCGGCGTCGACTACACCGCTTGGGCGAAGGGCAAAACCTTCGAGGCTAACGACACGCTTGTATTCAGATACGCCAGGAAGCAGCACACGGTGACAGAGGTGACCAAGAGCGACTACGACGCCTGCACCGTCAGCGGCAAACCGATCAGTGATTTCGAAGGAGGCGCGCTTGTGACATTCATAGCGCTCAGCCCCGGCGAGCACTACTTCATCTGCAAAATCGGCAACCATTGCGCCAGCGGCATGAA G CTCGCCGTCACCGTCTCCAACTCCAGCGACACCCCGAGGCCGCAACCTTGGATTGGGCCTTACTCCACGCCAGCCAGCGCGTCCGCACACCTGCACGCCGGTGGCGCCGTCGT CGCGGCGGCCGTTGGGATCCTCCTCAATCTCGCCCTCTTCTGAGATCGCATTGACGCGTCGAGCGGCATGGACGTTGGCAGGGTGGAGGCAATGCATGATTCTTTGTAGCGTTTCTGATGAAATTTGTTTGATTATTTTGTTTACGTTCGATCGTGTATACGTGCGTAATAATGATTTATTGGTCTTGTGATTTATTTTCTCCTTATATTCATTTGT                                                                                                                                     ]
[+] EMBL CF309915             [                                                       CTGCACGCCCATTCGT CTCAAACACACATTCTTTGATTCTTCCTTCAATTTCCCCTTTTCAACTCTGTCATCAACTTAATTGTTAGAAGCGACCTAAAGATTTTGCGGCCGATCGAGCATGGCGTCCCCTTCGGCTCTGATCGCAATGCTCCTCG TCATGGTCGTCGGCCGCGCCGCCGTGGCCTCGGCGATGGAGCTGAGTTTCATTGTCGGAGATGCGCAGGGTTGGAACACCGGCGTCGACTACACCGCTTGGGCGAAGGGCAAAACCTTCGAGGCTAACGACACGCTTGTATTCAGATACGCCAGGAAGCAGCACACGGTGACAGAGGTGACCAAGAGCGACTACGACGCCTGCACCGTCAGCGGCAAACCGATCAGTGATTTCGAAGGAGGCGCGCTTGTGACATTCATAGCGCTCAGCCCCGGCGAGCACTACTTCATCTGCAAAATCGGCAACCATTGCGCCAGCGGCATGAANG CTCGCCGTCACCGTCTCCAACTCCAGCGACACCCC                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CF312293             [                                                       CTGCACGCCCATTCGT CTCAAACACACATTCTTTGATTCTTCCTTCAATTTCCCCTTTTCAACTCTGTCATCAACTTAATTGTTAGAAGCGACCTAAAGATTTTGCGGCCGATCGAGCATGGCGTCCCCTTCGGCTCTGATCGCAATGCTCCTCGNTCATGGTCGTCGGCTGCGCCGCCGTGGCCTCGGCGATGGAGCTGAGTTTCATTGTCGGAGATGCGCAGGGTTGGAACACCGGCGTCGACTACACCGCTTGGGCGAAGGGCAAAACCTTCGAGGCTAACGACACGCTTGTATTCAGATACGCCAGGAAGCAGCACACGGTGACAGAGGTGACCAAGAGCGACTACGACGCCTGCACCGTCAGCGGCAAACCGATCAGTGATTTCGAAGGAGGCGCGCTTGTGACATTCATAGCGCTCAGCCCCGGCGAGCACTACTTCATCTGCAAAATCGGCAACCATTGCGCCAGCGGCATGAA GNCTCGCCGTCACCGTCTCCAACTCCAGCGACACC                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AA754241             [                                                    cgagTGCACGCCCATTNGTGCBNAAACACACATTCTTTGATTCTTSCTTCAATNVVCVVTNNNCAACTCTGTCATCAACTTAATTGTTAGAAGCGACCTAAAGATTTTGCGGCCGMTCGAGCATGGCGTCCCCTTCGGCTCTGATCGCAATGCTCCTCG TCATGGTCGTCGGCTGCG CSCCGTGGCCTCGGCGATGGAGCTGAGTTTCATTGTCGGAGATGCGCAGGGTTGGAACACCGGCGTCGACTACACCGCTTGGGCGAAGGGCAAAACCTTCGAGGCTAACGACACGCTTGTATTCAGATACGCCAGGAAGCAGCACACGGTGACAGAGGTGACCAAGAGCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CF304758             [                                                               CCATTCGT CTCAAACACACATTCTTTGATTCTTCCTTCAATTTCCCCTTTTCAACTCTGTCATCAACTTAATTGTTAGAAGCGACCTAAAGATTTTGCGGCCGATCGAGCATGGCGTCCCCTTCGGCTCTGATCGCAATGCTCCTCG TCATGGTCGTCGGCTGCGCCGCCGTGGCCTCGGCGATGGAGCTGAGTTTCATTGTCGGAGATGCGCAGGGTTGGAACACCGGCGTCGACTACACCGCTTGGGCGAAGGGCAAAACCTTCGAGGCTAACGACACGCTTGTATTCAGATACGCCAGGAAGCAGCACACGGTGACAGAGGTGACCAAGAGCGACTACGACGCCTGCACCGTCAGCGGCAAACCGATCAGTGATTTCGAAGGAGGCGCGCTTGTGACATTCATAGCGCTCAGCCCCGGCGAGCACTACTTCATCTGCAAAATCGGCAACCATTGCGCCAGCGGTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CF336462             [                                                                                                                                                                                                                                                                                                                                                        CGCTTGTATTCAGATACGCCAGGAAGCAGCACACGGTGACAGAGGTGACCAAGAGCGACTACGACGCCTGCACCGTCAGCGGCAAACCGATCAGTGATTTCGAAGGAGGCGCGCTTGTGACATTCATAGCGCTCAGCCCCGGCGAGCACTACTTCATCTGCAAAATCGGCAACCATTGCGCCAGCGGCATGAA G CTCGCCGTCACCGTCTCCAACTCCAGCGACACCCCGAGGCCGCAACCTTGGATTGGGCCTTACTCCACGCCAGCCAGCGCGTCCGCACACCTGCACGCCGGTGGCGCCGTCGT CGCGGCGGCCGTTGGGATCCTCCTCAATCTCGCCCTCTTCTGAGATCGCATTGACGCGTCGAGCGGCATGGACGTTGGCAGGGTGGAGGCAATGCATGATTCTTTGTAGCGTTTCTGATGAAATTTGTTTGATTATTTTGTTTACGTTCGATCGTGTATACGTGCGTAATAATGATTTATTGGTCTTGTGATTTAaaa                                                                                                                                                        ]
[-] EMBL CF312292             [                                                                                                                                                                                                                                                                                                                                                                                                                                              CCGATCAGT ATTTCGAAGGAGGCGCGCTTGTGACATTCATAGCGCTCAGCCCCGGCGAGCACTACTTCATCTGCAAAATCGGCAACCATTGCGCCAGCGGCATGAA G CTCGCCGTCACCGTCTCCAACTCCAGCGACACCCCGAGGCCGCAACCTTGGATTGGGCCTTACTCCACGCCAGCCAGCGCGTCCGCACACCTGCACGCCGGTGGCGCCGTCGTNCGCGGCGGCCGTTGGGATCCTCCTCAATCTCGCCCTCTTCTGAGATCGCATTGACGCGTCGAGCGGCATGGACGTTGGCAGGGTGGAGGCAATGCATGATTCTTTGTAGCGTTTCTGATGAAATTTGTTTGATTATTTTGTTTACGTTCGATCGTGTATACGTGCGTAATAATGATTTATTGGTCTTGTGATTTATTTTCTCCTTATATTCATTTGTATATCCTCTGATATAATTTTCTGTACATCTCAGCATTCTGTATGCCATTCAGTGATGTAGGTTAGAGTAACAAAGAACTTTGCTGTGATGTCTTTATANTAAAAAAA                          ]
[-] EMBL CF309916             [                                                                                                                                                                                                                                                                                                                                                                                                                                              CCGATCAGT ATTTCGAAGGAGGCGCGCTTGTGACATTCATAGCGCTCAGCCCCGGCGAGCACTACTTCATCTGCAAAATCGGCAACCATTGCGCCAGCGGCATGAA G CTCGCCGTCACCGTCTCCAACTCCAGCGACACCCCGAGGCCGCAACCTTGGATTGGGCCTTACTCCACGCCAGCCAGCGCGTCCGCACACCTGCACGCCGGTGGCGCCGTCGT CGCGGCGGCCGTTGGGATCCTCCTCAATCTCGCCCTCTTCTGAGATCGCATTGACGCGTCGAGCGGCATGGACGTTGGCAGGGTGGAGTCAATGCATGATTCTTTGTAGCGTTTCTGATGAAATTTGTTTGATTATTTTGTTTACGTTCGATCGTGTATACGTGCGTAATAATGATTTATTGGTCTTGTGATTTATTTTCTCCTTATATTCATTTGTATATCCTCTGATATAATTTTCTGTACATCTCAGCATTCTGTATGCCATTCAGTGATGTAGGTTAGAGTAACAAAGAACTTTGCTGTGATGTCTTTATACTAACTTAAAAGTGAACTCGTTATCCTTCAAAAAA]
[-] EMBL CF335935             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ACACCCCGAGGCCGCAACCTTGGATTGGGCCTTACTCCACGCCAGCCAGCGCGTCCGCACACCTGCACGCCGGTGGCGCCGTCGT CGCGGCGGCCGTTGGGATCCTCCTCAATCTCGCCCTCTTTTGAGATCGCATTGACGCGTCGAGCGGCATGGACGTTGGCAGGGTGGAGGCAATGCATGATTCTTTGTAGCGTTTCTGATGAAATTTGTTTGATTATTTTGTTTACGTTCGATCGTGTATACGTGCGTAATAATGATTTATTGGTCTTGTGATTTATTTTCTCCTTATATTCATTTGTATATCCTCTGATAAAAaa                                                                                                                   ]


>consensus_14365#0 TGAAACTCTCAGTATAAAAGGACCCTGCAGCCTGATCCCCTGTCAATACAACCAGCTGCA CGCCCATTCGTCTCAAACACACATTCTTTGATTCTTCCTTCAATTTCCCCTTTTCAACTC TGTCATCAACTTAATTGTTAGAAGCGACCTAAAGATTTTGCGGCCGATCGAGCATGGCGT CCCCTTCGGCTCTGATCGCAATGCTCCTCGTCATGGTCGTCGGCTGCGCCGCCGTGGCCT CGGCGATGGAGCTGAGTTTCATTGTCGGAGATGCGCAGGGTTGGAACACCGGCGTCGACT ACACCGCTTGGGCGAAGGGCAAAACCTTCGAGGCTAACGACACGCTTGTATTCAGATACG CCAGGAAGCAGCACACGGTGACAGAGGTGACCAAGAGCGACTACGACGCCTGCACCGTCA GCGGCAAACCGATCAGTGATTTCGAAGGAGGCGCGCTTGTGACATTCATAGCGCTCAGCC CCGGCGAGCACTACTTCATCTGCAAAATCGGCAACCATTGCGCCAGCGGCATGAAGCTCG CCGTCACCGTCTCCAACTCCAGCGACACCCCGAGGCCGCAACCTTGGATTGGGCCTTACT CCACGCCAGCCAGCGCGTCCGCACACCTGCACGCCGGTGGCGCCGTCGTCGCGGCGGCCG TTGGGATCCTCCTCAATCTCGCCCTCTTCTGAGATCGCATTGACGCGTCGAGCGGCATGG ACGTTGGCAGGGTGGAGGCAATGCATGATTCTTTGTAGCGTTTCTGATGAAATTTGTTTG ATTATTTTGTTTACGTTCGATCGTGTATACGTGCGTAATAATGATTTATTGGTCTTGTGA TTTATTTTCTCCTTATATTCATTTGTATATCCTCTGATATAATTTTCTGTACATCTCAGC ATTCTGTATGCCATTCAGTGATGTAGGTTAGAGTAACAAAGAACTTTGCTGTGATGTCTT TATANTAAAAAAAAAGTGAACTCGTTATCCTTCAAAAAA



consensusID : consensus_14365#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 482
fasta sequence
                              [CTTCGGCTCTGATCGCAATGCTCCTCGTCATGGTCGTCGGCTGCGCCGCCGTGGCCTCGGCGATGGGAGCTGAGTTTCATTGTCNGAAGATGCGCACGGTTGGAACACCGGCGTCGACTACACCGCTTGGGCGAANGGCAAAACCTTCGAAGCTAACGACACGCTTGTNTTCAGATACGCCAGGAAAGCAGCACACGGTGACCGAAGTNAACCAAGAACGANTACNANGCCTGCACCCGTCAGCGGCNAACCGATCAGTGATTTCNAAAGGAAGCGCGCTTGTGACATTCATAANCGCTCAGCCCCGGCGANCACTACTTCATCTGCAAAATCGGCAACCATTGCGCCAGCGGCATGAANCTCCGCCCGTCACCGTCTCCAACTCCAAGCGAACACCCCCAAGGNCGCNTCCTTGGAATTGGGGCCTTTACTCCACGCCAAGCCAAACGCCGTCCGCACACCTNCACGNCCGGTGGCGCCGT]

[+] EMBL BE228554             [CTTCGGCTCTGATCGCAATGCTCCTCGTCATGGTCGTCGGCTGCGCCGCCGTGGCCTCGGCGATGGGAGCTGAGTTTCATTGTCNGAAGATGCGCACGGTTGGAACACCGGCGTCGACTACACCGCTTGGGCGAANGGCAAAACCTTCGAAGCTAACGACACGCTTGTNTTCAGATACGCCAGGAAAGCAGCACACGGTGACCGAAGTNAACCAAGAACGANTACNANGCCTGCACCCGTCAGCGGCNAACCGATCAGTGATTTCNAAAGGAAGCGCGCTTGTGACATTCATAANCGCTCAGCCCCGGCGANCACTACTTCATCTGCAAAATCGGCAACCATTGCGCCAGCGGCATGAANCTCCGCCCGTCACCGTCTCCAACTCCAAGCGAACACCCCCAAGGNCGCNTCCTTGGAATTGGGGCCTTTACTCCACGCCAAGCCAAACGCCGTCCGCACACCTNCACGNCCGGTGGCGCCGT]


>consensus_14365#1 CTTCGGCTCTGATCGCAATGCTCCTCGTCATGGTCGTCGGCTGCGCCGCCGTGGCCTCGG CGATGGGAGCTGAGTTTCATTGTCNGAAGATGCGCACGGTTGGAACACCGGCGTCGACTA CACCGCTTGGGCGAANGGCAAAACCTTCGAAGCTAACGACACGCTTGTNTTCAGATACGC CAGGAAAGCAGCACACGGTGACCGAAGTNAACCAAGAACGANTACNANGCCTGCACCCGT CAGCGGCNAACCGATCAGTGATTTCNAAAGGAAGCGCGCTTGTGACATTCATAANCGCTC AGCCCCGGCGANCACTACTTCATCTGCAAAATCGGCAACCATTGCGCCAGCGGCATGAAN CTCCGCCCGTCACCGTCTCCAACTCCAAGCGAACACCCCCAAGGNCGCNTCCTTGGAATT GGGGCCTTTACTCCACGCCAAGCCAAACGCCGTCCGCACACCTNCACGNCCGGTGGCGCC GT



consensusID : consensus_14365#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 364
fasta sequence
                              [GTGGCGGCCGCAAGCTTGGATTGGGCCTTACTCCACGCCAGCCAGCGCGTCCGCACACCTGCACGCCGGTGGCGCCGTCGTCGCGGCGGCCGTTGGGATCCTCCTCAATCTCGCCCTCTTCTGAGATCGCATTGACGCGTCGAGCGGCATGGACGTTGGCAGGGTGGAGGCAATGCATGATTCTTTGTAGCGTTTCTGATGAAATTTGTTTGATTATTTTGTTTACGTTCGATCGTGTATACGTGCGTAATAATGATTTATTGGTCTTGTGATTTATTTTCTCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAGCTTGCGGCCGCAAGCTTTTTTTTTTTTTTTTTTTTTACAAAATGAATAATA]

[+] EMBL OSA420722            [GTGGCGGCCGCAAGCTTGGATTGGGCCTTACTCCACGCCAGCCAGCGCGTCCGCACACCTGCACGCCGGTGGCGCCGTCGTCGCGGCGGCCGTTGGGATCCTCCTCAATCTCGCCCTCTTCTGAGATCGCATTGACGCGTCGAGCGGCATGGACGTTGGCAGGGTGGAGGCAATGCATGATTCTTTGTAGCGTTTCTGATGAAATTTGTTTGATTATTTTGTTTACGTTCGATCGTGTATACGTGCGTAATAATGATTTATTGGTCTTGTGATTTATTTTCTCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAGCTTGCGGCCGCAAGCTTTTTTTTTTTTTTTTTTTTTACAAAATGAATAATA]
[+] EMBL OSA302307            [                          CTTACTCCACGCCAGCCAGCGCGTCCGCACACCTGCACGCCGGTGGCGCCGTCGTCGCGGCGGCCGTTGGGATCCTCCTCAACCTCGCCCTCTTCTGAGATCGCATTGACGCGTCGAGCGGCATGGACGTTGGCAGGGTGGAGGCAATACATGATTCTTTGTAGCGTTTCTGATGAAATTTGTTTGATTATTTTGTTTACGTTCGATCGTGTATACGTGCGTAATAATGATTTATTGGTCTTGTGATTTATTTTCTC                                                                                 ]


>consensus_14365#2 GTGGCGGCCGCAAGCTTGGATTGGGCCTTACTCCACGCCAGCCAGCGCGTCCGCACACCT GCACGCCGGTGGCGCCGTCGTCGCGGCGGCCGTTGGGATCCTCCTCAATCTCGCCCTCTT CTGAGATCGCATTGACGCGTCGAGCGGCATGGACGTTGGCAGGGTGGAGGCAATGCATGA TTCTTTGTAGCGTTTCTGATGAAATTTGTTTGATTATTTTGTTTACGTTCGATCGTGTAT ACGTGCGTAATAATGATTTATTGGTCTTGTGATTTATTTTCTCCTTAAAAAAAAAAAAAA AAAAAAAAAAAAGCTTGCGGCCGCAAGCTTTTTTTTTTTTTTTTTTTTTACAAAATGAAT AATA



consensusID : consensus_14365#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 276
fasta sequence
                              [ATTGGCCACTTACTCCACAGCACAAGCCAGCAGCAGTCCAGCACACACTGCACACCAGGTGGCACACGTCATCACAGGCAGCCCATTGGGATCCTCACTCAATCTCACCCTCTTCTGAGATCAGCATTGACGCAGTCGAGCGGCATGGACAGTTGGCAGGGTGGAGCAATGCATGATTCTTTGTAGCGTTTCTGATGAAATTTGTTTGATTATTTTGTTTACGTTCGATCAGTGTATACGTGCGTAATAATGATTTATTGGTCTTGTGATGAAAAA]

[+] EMBL BI806142             [ATTGGCCACTTACTCCACAGCACAAGCCAGCAGCAGTCCAGCACACACTGCACACCAGGTGGCACACGTCATCACAGGCAGCCCATTGGGATCCTCACTCAATCTCACCCTCTTCTGAGATCAGCATTGACGCAGTCGAGCGGCATGGACAGTTGGCAGGGTGGAGCAATGCATGATTCTTTGTAGCGTTTCTGATGAAATTTGTTTGATTATTTTGTTTACGTTCGATCAGTGTATACGTGCGTAATAATGATTTATTGGTCTTGTGATGAAAAA]


>consensus_14365#3 ATTGGCCACTTACTCCACAGCACAAGCCAGCAGCAGTCCAGCACACACTGCACACCAGGT GGCACACGTCATCACAGGCAGCCCATTGGGATCCTCACTCAATCTCACCCTCTTCTGAGA TCAGCATTGACGCAGTCGAGCGGCATGGACAGTTGGCAGGGTGGAGCAATGCATGATTCT TTGTAGCGTTTCTGATGAAATTTGTTTGATTATTTTGTTTACGTTCGATCAGTGTATACG TGCGTAATAATGATTTATTGGTCTTGTGATGAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14365#2      ------------------------------------------------------------
consensus_14365#3      ------------------------------------------------------------
consensus_14365#0      TGAAACTCTCAGTATAAAAGGACCCTGCAGCCTGATCCCCTGTCAATACAACCAGCTGCA 60
consensus_14365#1      ------------------------------------------------------------
                                                                                   

consensus_14365#2      ------------------------------------------------------------
consensus_14365#3      ------------------------------------------------------------
consensus_14365#0      CGCCCATTCGTCTCAAACACACATTCTTTGATTCTTCCTTCAATTTCCCCTTTTCAACTC 120
consensus_14365#1      ------------------------------------------------------------
                                                                                   

consensus_14365#2      ------------------------------------------------------------
consensus_14365#3      ------------------------------------------------------------
consensus_14365#0      TGTCATCAACTTAATTGTTAGAAGCGACCTAAAGATTTTGCGGCCGATCGAGCATGGCGT 180
consensus_14365#1      ------------------------------------------------------------
                                                                                   

consensus_14365#2      ------------------------------------------------------------
consensus_14365#3      ------------------------------------------------------------
consensus_14365#0      CCCCTTCGGCTCTGATCGCAATGCTCCTCGTCATGGTCGTCGGCTGCGCCGCCGTGGCCT 240
consensus_14365#1      ------------------------------------------------------------
                                                                                   

consensus_14365#2      ------------------------------------------------------------
consensus_14365#3      ------------------------------------------------------------
consensus_14365#0      CGGCGATGGAGCTGAGTTTCATTGTCGGAGATGCGCAGGGTTGGAACACCGGCGTCGACT 300
consensus_14365#1      ------------------------------------------------------------
                                                                                   

consensus_14365#2      ------------------------------------------------------------
consensus_14365#3      ------------------------------------------------------------
consensus_14365#0      ACACCGCTTGGGCGAAGGGCAAAACCTTCGAGGCTAACGACACGCTTGTATTCAGATACG 360
consensus_14365#1      ------------------------------------------------------------
                                                                                   

consensus_14365#2      ------------------------------------------------------------
consensus_14365#3      ------------------------------------------------------------
consensus_14365#0      CCAGGAAGCAGCACACGGTGACAGAGGTGACCAAGAGCGACTACGACGCCTGCACCGTCA 420
consensus_14365#1      ------------------------------------------------------------
                                                                                   

consensus_14365#2      ------------------------------------------------------------
consensus_14365#3      ------------------------------------------------------------
consensus_14365#0      GCGGCAAACCGATCAGTGATTTCGAAGGAGGCGCGCTTGTGACATTCATAGCGCTCAGCC 480
consensus_14365#1      ------------------------------------------------------------
                                                                                   

consensus_14365#2      ------------------------------------------------------------
consensus_14365#3      ------------------------------------------------------------
consensus_14365#0      CCGGCGAGCACTACTTCATCTGCAAAATCGGCAACCATTGCGCCAGCGGCATGAAGCTCG 540
consensus_14365#1      -----------------------------CTTCGGCTCTGATCGCAATGCTCCTCGTCAT 31
                                                                                   

consensus_14365#2      ----------------------------GTGGCGGCCGCAAGCTTGGATTGGGC-CTTAC 31
consensus_14365#3      -----------------------------------------------ATTGGCCACTTAC 13
consensus_14365#0      CCGTCACCGTCTCCAACTCCAGCGACACCCCGAGGCCGCAACCTTGGATTGGGC-CTTAC 599
consensus_14365#1      GGTCGTCGGCTGCGCCGCCGTGGCCTCGGCGATGGGAGCTGAGTTTCATTGTCNGAAGAT 91
                                                                      ****       * 

consensus_14365#2      TC-CACGCCA---GCCAGCG--CGTCC-GCACAC---CTGCACGCC-GGTGGCGC-CGTC 79
consensus_14365#3      TC-CACAGCACAAGCCAGCAGCAGTCCAGCACACA--CTGCACACCAGGTGGCACACGTC 70
consensus_14365#0      TC-CACGCCA---GCCAGCG--CGTCC-GCACAC---CTGCACGCC-GGTGGCGC-CGTC 647
consensus_14365#1      GCGCACGGTT-GGAACACCGG-CGTCGACTACACCGCTTGGGCGAANGGCAAAAC-CTTC 148
                        * ***         ** *    ***    ****    **  *    **     * * **

consensus_14365#2      GTCGC-GGCGGCC-GTTGGGATCC---TC-CTCAATCTCGCCCTCTTCTGAGATC-GCAT 132
consensus_14365#3      ATCACAGGCAGCCCATTGGGATCC---TCACTCAATCTCACCCTCTTCTGAGATCAGCAT 127
consensus_14365#0      GTCGC-GGCGGCC-GTTGGGATCC---TC-CTCAATCTCGCCCTCTTCTGAGATC-GCAT 700
consensus_14365#1      GAAGCTAACGACACGCTTGTNTTCAGATACGCCAGGAAAGCAGCACACGGTGACCGAAGT 208
                           *   *  *    * *  * *   *    **      *      * * ** *    *

consensus_14365#2      TGACGC--GTCGAGCGGCATGG--AC-GTTGGCAGGGTGGAGGCAATGCATGATTCTTTG 187
consensus_14365#3      TGACGCA-GTCGAGCGGCATGG--ACAGTTGGCAGGGTGGAG-CAATGCATGATTCTTTG 183
consensus_14365#0      TGACGC--GTCGAGCGGCATGG--AC-GTTGGCAGGGTGGAGGCAATGCATGATTCTTTG 755
consensus_14365#1      NAACCAAGAACGANTACNANGCCTGCACCCGTCAGCGGCNAACCGATCAGTGATTTCNAA 268
                         **      ***     * *    *    * *** *   *  * **   *****     

consensus_14365#2      TAGCGTTTCTGATGAAATTTGTTTGATTATTTTGTTTACGTTCGATC-GTGTAT-ACGTG 245
consensus_14365#3      TAGCGTTTCTGATGAAATTTGTTTGATTATTTTGTTTACGTTCGATCAGTGTAT-ACGTG 242
consensus_14365#0      TAGCGTTTCTGATGAAATTTGTTTGATTATTTTGTTTACGTTCGATC-GTGTAT-ACGTG 813
consensus_14365#1      AGGAAGCGCGCTTGTGACATTCATAANCGCTCAGCCCCGG--CGANCACTACTTCATCTG 326
                         *     *   **  *  *   * *    *  *     *  *** *  *   * *  **

consensus_14365#2      CGTAATAATGATTTATTGGTCTTGTG--ATTTATTTTCTCCTTAAAAAAAAAAAAAAAAA 303
consensus_14365#3      CGTAATAATGATTTATTGGTCTTGTG--ATGAAAAA------------------------ 276
consensus_14365#0      CGTAATAATGATTTATTGGTCTTGTG--ATTTATTTTCTCCTTATATTCATTTGTATATC 871
consensus_14365#1      CAAAATCGGCAACCATTGCGCCAGCGGCATGAANCTCCGCCCGTCACCGTCTCCAACTCC 386
                       *  ***    *   ****  *  * *  **  *                           

consensus_14365#2      AAAAAAAAAGCTTGCGGCCGCAAGCTTTTTTTTTTTTTTTTTTTTTACAAAATGAATAAT 363
consensus_14365#3      ------------------------------------------------------------
consensus_14365#0      CTCTGATATAATTTTCTGTACATCTCAGCATTCTGTATGCCATTCAGTGATGTAGGTTAG 931
consensus_14365#1      AAGCGAACACCCCCAAGGNCGCNTCCTTGGAATTGGGGCCTTTACTCCACGCCAAGCCAA 446
                                                                                   

consensus_14365#2      A----------------------------------------------------------- 364
consensus_14365#3      ------------------------------------------------------------
consensus_14365#0      AGTAACAAAGAACTTTGCTGTGATGTCTTTATANTAAAAAAAAAGTGAACTCGTTATCCT 991
consensus_14365#1      ACGCCGTCCGCACACCTNCACGNCCGGTGGCGCCGT------------------------ 482
                                                                                   

consensus_14365#2      --------
consensus_14365#3      --------
consensus_14365#0      TCAAAAAA 999
consensus_14365#1      --------
                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)