These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14372#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1290 fasta sequence [TATTGGAGCAAAACCATTTCCTTCTCTCCTGCCTCCTTGGGCTCATCTCTCTCTCTCTCACTCTTCTCCCTCTTCTCACCACCAGACGCCATCAAACCCCTACCTCCCGCGGCGGCGGCGGCGGCGGCGGCCGGCGGCGAGCTCCGGACAGACAGAGGAGGGCGCGA-CGGAGAGGGCGAGGAGGGAAGGAGGGAGGGAGGCGACAGGCATGGGGACCCTCGGGC-GCGCGATCTACACGGTGGGG-AAGTGGAT-CCGCGGCACGGGGCAGGCCATGGACCGCCTCGGATCCACCAT-CCAGGGCGGCCTCCGCGTCGAGGAGCAGCTTTCAAGGCATCGCACGATCATGAACATA-TTTGAGAAAGAGCCCAGAGTCCACAAGGATGTTTTTGTTGCTCCCAGTGCAGCTGTGATTGGCGATG-TTGAGATCGGACATGGA-TCCTCAATCTGGTACGGCTCCATTTTAAGAGGTGATGTCAAC-AGCATTCA-TATTGGATCTGGATCAAATATACAAGACAATTCCCTTGTACATG-TTGCAAAAGCTAACATCAGCGGGAAGGTTCTCCCAACCATAATTGGAAACAATGTTACAATAGGTCATAGTGCTGTTCTGCA-CGCATGCACCGTCGAGGA-TGAAGCTTTTGTTGGTATGGGTGCCACTCTGCTTGATGGAGTGGTCGTTGAAAAGCACAGCATGGTTGGTGCAGGATCGCTTGTTAAGCAGAACACAAGGATTCCTTCTGGAGAGGTCTGGGTCGGTAATCCTGCCAAGTTCCTAAGAAAGCTTACTGAAGAGGAGATAGCGTTCATTGCTCAGTCAGCAACGAACTACATCAATCTGGCCCAAGTCCATGCTGCCGAGAATTCCAAGACCTTCGACGAGATCGAGCTCGAGAAGATGCTGAGGA-A-AAAGTATGCCCACAAAGACGAGGAGTATGATTCGATGCTCGGCGTGGTCCGTGAGATC-CCGCCGGAGCTCATCCTCCCGGACAACATCCTCCCAAACAAGGCTCAGAAGGCTGTTGCTCACTGAATGTTTTGTCAAGCTCCCGCTTGGGAAAAGCTTGGTTTTTTTGTTACGTGTTTTGACCTGGAACAACATTTGACACATGTCTTTTGATCTCATTGTCTGTTTTTCAAGCCCAATAAGAATTTGGGTCGAGCATTGTTTTAGGATCGACCATATACAGTACCTCTCTTTGCATTACAATGAAGAGCAGTTAATTTGGGTCACTTTTTACATCTTTA-CTGAAGTAGAAACGCGTCCTCTGTCTGTGACAGTTTTTTTAAAAA] [+] EMBL AU064007 [TATTGGAGCAAAACCATTTCCTTCTCTCCTGCCTCCTTGGGCTCATCTCTCTCTCTCTCACTCTTCTCCCTCTTCTCACCACCAGACGCCATCAAACCCCTACCTCCCGCGGCGGCGGCGGCGGCGGCGGCCGGCGGCGAGCTCCGGACAGACAGAGGAGGGCGCGA CGGAGANGGCGAGGAGGGAAGGAGGGAGGGAGGCGACAGGCATGGGGACCCTCGGGC GCGCGATCTACACGGTGGGG AAGTGGAT CCGCGGCACGGGGCANGCCATGGACCGCCTCGGATNCAACAT CCAAGGCGGCCTCCGCGTCGAa ] [+] EMBL AK058974 [ ATCTCTCTCTCTCTCACTCTTCTCCCTCTTCTCACCACCAGACGCCATCAAACCCCTACCTCCCGCGGCGGCGGCGGCGGCGGCGGCCGGCGGCGAGCTCCGGACAGACAGAGGAGGGCGCGAGCGGAGAGGGCGAGGAGGGAAGGAGGGAGGGAGGCGACAGGCATGGGGACCCTCGGGC GCGCGATCTACACGGTGGGG AAGTGGAT CCGCGGCACGGGGCAGGCCATGGACCGCCTCGGATCCACCAT CCAGGGCGGCCTCCGCGTCGAGGAGCAGCTTTCAAGGCATCGCACGATCATGAACATA TTTGAGAAAGAGCCCAGAGTCCACAAGGATGTTTTTGTTGCTCCCAGTGCAGCTGTGATTGGCGATG TTGAGATCGGACATGGA TCCTCAATCTGGTACGGCTCCATTTTAAGAGGTGATGTCAAC AGCATTCA TATTGGATCTGGATCAAATATACAAGACAATTCCCTTGTACATG TTGCAAAAGCTAACATCAGCGGGAAGGTTCTCCCAACCATAATTGGAAACAATGTTACAATAGGTCATAGTGCTGTTCTGCA CGCATGCACCGTCGAGGA TGAAGCTTTTGTTGGTATGGGTGCCACTCTGCTTGATGGAGTGGTCGTTGAAAAGCACAGCATGGTTGGTGCAGGATCGCTTGTTAAGCAGAACACAAGGATTCCTTCTGGAGAGGTCTGGGTCGGTAGTCCTGCCAAGTTCCTAAGAAAGCTTACTGAAGAGGAGATAGCGTTCATTGCTCAGTCAGCAACGAACTACATCAATCTGGCCCAAGTCCATGCTGCCGAGAATTCCAAGACCTTCGACGAGATCGAGCTCGAGAAGATGCTGAGGA A AAAGTATGCCCACAAAGACGAGGAGTATGATTCGATGCTCGGCGTGGTCCGTGAGATC CCGCCGGAGCTCATCCTCCCGGACAACATCCTCCCAAACAAGGCTCAGAAGGCTGTTGCTCACTGAATGTTTTGTCAAGCTCCCGCTTGGGAAAAGCTTGGTTTTTTTGTTACGTGTTTTGACCTGGAACAACATTTGACACATGTCTTTTGATCTCATTGTCTGTTTTTCAAGCCCAATAAGAATTTGGGTCGAGCATTGTTTTAGGATCGACCATATACAGTACCTCTCTTTGCATTACAATGAAGAGCAGTT ] [+] EMBL AK103904 [ CTCTCTCTCTCTCACTCTTCTCCCTCTTCTCACCACCAGACGCCATCAAACCCCTACCTCCCGCGGCGGCGGCGGCGGCGGCGGCCGGCGGCGAGCTCCGGACAGACAGAGGAGGGCGCGAGCGGAGAGGGCGAGGAGGGAAGGAGGGAGGGAGGCGACAGGCATGGGGACCCTCGGGC GCGCGATCTACACGGTGGGG AAGTGGAT CCGCGGCACGGGGCAGGCCATGGACCGCCTCGGATCCACCAT CCAGGGCGGCCTCCGCGTCGAGGAGCAGCTTTCAAGGCATCGCACGATCATGAACATA TTTGAGAAAGAGCCCAGAGTCCACAAGGATGTTTTTGTTGCTCCCAGTGCAGCTGTGATTGGCGATG TTGAGATCGGACATGGA TCCTCAATCTGGTACGGCTCCATTTTAAGAGGTGATGTCAAC AGCATTCA TATTGGATCTGGATCAAATATACAAGACAATTCCCTTGTACATG TTGCAAAAGCTAACATCAGCGGGAAGGTTCTCCCAACCATAATTGGAAACAATGTTACAATAGGTCATAGTGCTGTTCTGCA CGCATGCACCGTCGAGGA TGAAGCTTTTGTTGGTATGGGTGCCACTCTGCTTGATGGAGTGGTCGTTGAAAAGCACAGCATGGTTGGTGCAGGATCGCTTGTTAAGCAGAACACAAGGATTCCTTCTGGAGAGGTCTGGGTCGGTAATCCTGCCAAGTTCCTAAGAAAGCTTACTGAAGAGGAGATAGCGTTCATTGCTCAGTCAGCAACGAACTACATCAATCTGGCCCAAGTCCATGCTGCCGAGAATTCCAAGACCTTCGACGAGATCGAGCTCGAGAAGATGCTGAGGA A AAAGTATGCCCACAAAGACGAGGAGTATGATTCGATGCTCGGCGTGGTCCGTGAGATC CCGCCGGAGCTCATCCTCCCGGACAACATCCTCCCAAACAAGGCTCAGAAGGCTGTTGCTCACTGAATGTTTTGTCAAGCTCCCGCTTGGGAAAAGCTTGGTTTTTTTGTTACGTGTTTTGACCTGGAACAACATTTGACACATGTCTTTTGATCTCATTGTCTGTTTTTCAAGCCCAATAAGAATTTGGGTCGAGCATTGTTTTAGGATCGACCATATACAGTACCTCTCTTTGCATTACAATGAAGAGCAGTTAATTTGGGTCACTTTTTACATCTTTA CTGAAGTAGAAACGCGTCC ] [+] EMBL C72188 [ TCTCACTCTTCTCCCTCTTCTCACCACCAGACGCCATCAAACCCCTACCTCCCGCGGCGGCGGCGGCGGCGGCGGCCGGCGGCGAGCTCCGGACAGACAGAGGAGGGCGCGA CGGAGAGGGCGAGGAGGGAAGGAGGGAGGGAGGCGACAGGCATGGGGACCCTCGGGC GCGCGATCTACACGGTGGGG AAGTGGAT CCGCGGCACGGGGCAGGCCATGGACCGCCTCGGATCCACCAT CCAGGGCGGCCTCCGCGTCGAGGAGCAGCTTTCAAGGCATCGCACGATCATGAACATA TTTGAGAAAGAGCCCAGAGTCCACAAGGATGTTTTTGTTGCTTCCAGTGCAANTGTGATTTGCGATG TTGAGATCGG CATGGA TCCTCAATCTTGTACGGNTCCATTTTAAGAGG ] [+] EMBL AU166567 [ GAGGCGACAGGCATGGGGACCCTCGGGCNGCGCGATCTACACGGTGGGGAAAGTGGATCCCGCGGCACGGGGCAGGCCATGGACCGCCTCGGATCCACCATCCCAGGGCGGCCTCCGCGTCGAGGAGCAGCTTTCAAGGCATCGCACGATCATGAACATATTTTGAGAAAGAGCCCAGAGTCCACAAGGATGTTTTTNTTGCTCCCANTGCAACTGTGATTGGCGATGTTTGAGATCGGACATGGATTCCTTAATCTGGTACGGGTTCATTTTAAGAGGNGATGTCAACAAGCATTCATTTTTGGATCTGGATCAAATATACAAGACAATTCCCTTGNACATGTTTGCAAAAGCTTACATCAGCGGGAAAGGTCTTCCAACCATAATTGGAAACAATG ] [-] EMBL CA759039 [ CCATAA TGGAAACAATGTT CAATAGGTNATAGTGCTGTTCTGCA CGCATGNACNGTCGAGGA TGAAGC TTTGTTGGTATGGGTGCCACTCTGCTTGATGGAGTGGTCG TGAAAAGCACAGCATGGTTGGTGCAGGATCGCTTGTTAAGCAGAACACAAGGATTCCTTCTGGAGAGGTCTGGGTCGGTAATCCTGCCAAGTTCCTAAGAAAGCTTACTGAAGAGGAGATAGCGTTCATTGCTCAGTCAGCAACGAACTACATCAATCTGGCCCAAGTCCATGCTGCCGAGAATTCCAAGACCTTCGACGAGATCGAGCTCGAGAAGATGCTGAGGA A AAAGTATGCCCACAAAGACGAGGAGTATGATTCGATGCTTGGCGTGGTCCGTGAGATT CCGCCGGAGCTCATCCTCCCGGACAACATCCTTCCAAACAAGGCTTAGAAGGCTGTTGCTCACTGAATGTTTTGTCAAGCTCCCGCTTGGGAAAAGCTTGGTTTTTTTGTTACGTGTTTTGACCTGGAACAACATTTGACACATGTCTTTTGATCTCATTGTCTGTTTTTCAAGCCCAATAAGAATTTGGGTCGAGCATTGTTTTAGGATCGACCATATACAGTACCTCTCTTTGCATTACAATGAAGAGCAGTTAATTTGGGTCACTTTTTACATCTTTA CTGAAAAAAAAAaa ] [+] EMBL AU082386 [ TAGTGCTGTTCTGCACCGCATGCACCNTCGAGGATTGAA CTTTTGTTGGTATGGNTGCCACTCTGCTTGATGGAGTGGTCGTTGAAAAGCACAGCATGNTTGNTGCAGGATCGCTTGTTAAGCAGAACACAAGGATTCCTTCTGGAGAGGTCTGGGTCGGTAATCCTGCCAAGTTCCTAAGAAAGCTTACTGAAGAGGAGATAGCGTTCATTGCTCAGTCAGCAACGAACTACATCAATCTGGCCCAAGTCCATGCTGCCGAGAATTCCAAGACCTTCGACGAGATCGAGCTCGAGAAGATGCTGAGGA A AAAGTATGCCCACAAAGACGAGGAGTATGATTCGATGCTCGGCGTGGTCCGTGAGATC CCGCCGGAGCTCATCCTCCCGGACAACATCCTCCCAAACAAGGCTCAGAAGGCTGTTGCTCACTGAATGTTTTGTCAAGCTCCCGCTTGGGAAAAGCTTGGTTTTTTTGTTACGTGTTTTGACCTGGAACAACATTTGACACATGTCTTTTGATCTCATTGTCTGTTTTTCAAGCCCAATAAGAATTTGGGTCGAGCATTGTTTTAGGATCGACCATATACAGTACCTCTCTTTGCATTACAATGAAGAGCAGTTAATTTGGGTCACTTTTTACATCTTTA CTGAAGTAGAAACGCGTCCTCTGTCTGTGACAGTTTTTTTAAAAA] [+] EMBL BI806276 [ anTGTAGAGGAGATAGCGTTCATTGCTCAGTCAGCAACGANCTACATCAATCTGGCCCAAGTCCATGCTGCCGACAATTCCAAGACCTTCGACGAGATCGAGCTCGAGAAGATGCTGAGGANATAATGTATTCCCNC AAGACGAGGAGTATGATTCGATGCTCGGCGTGGTCCGTGAGATCTCCGCCGGAGCTCATCCTCCCGGACAACATCCTCCC AACAAGGCTCAGAAGGCTGTTGCTCACTGAATGTTTTGTCAAGCTCCCGCTTGGGAAAAGCTTGGTTTTTTTGTTACGTGTTTTGACCTGGAACAACATTTGACACATGTCTTTTGATCTCATTGTCTGTTTTTCAAGCCC ATAAGAATTTGGGTCGAGCATTGTTTTAGGATCGACCATATACAGTACCTCTCTTTGCATTAC ATGAAGAGC GTTAATTTGGGTCACTTTTTACATCTTTACCTGAAGTAGAAACGCGTCCTCTGTCNGTGAaaaaaaaaa ] [+] EMBL AU166566 [ GAGATAGCGTTCATTGCTCAGTCAGCAACGAACTACATCAATCTGGCCCAAGTCCATGCTGCCGAGAATTCCAAGACCTTNGACGAGATCGAGCTCGAGAAGATGCTGAGGA A AAAGTATGCCCACAAAGACGAGGAGTATGATTCGATGCTCGGCGTGGTCCGTGAGATC CCGCCGGAGCTCATCCTCCCGGACAACATCCTCCCAAACAAGGCTCAGAAGGCTGTTGCTCACTGAATGTTTTGTCAAGCTCCCGCTTGGGAAAAGCTTGGTTTTTTTGTTACGTGTTTTGACCTGGAACAACATTTGACACATGTCTTTTGATCTCATTGTCTGTTTTTCAAGCCCAATAAGAATTTGGGTCGAGCATTGTTTTAGGATCGACCATATACAGTACCTCTCTTTGCATTACAATGAAGAGCAGTTAATTTaaaaaaaa ] [+] EMBL AU174163 [ ATTGCTCAGTCAGCAACGAACTACATCAATCTGGCCCAAGTCCATGCTGCCGAGAATTCCAAGACCTTCGACGAGATCGAGCTCGAGAAGATGCTGAGGA A AAAGTATGCCCACAAAGACGAGGAGTATGATTCGATGCTCGGCGTGGTCCGTGAGATC CCGCCGGAGCTCATCCTCCCGGACAACATCCTCCCAAACAAGGCTCAGAAGGCTGTTGCTCACTGAATGTTTTGTCAAGCTCCCGCTTGGGAAAAGCTTGGTTTTTTTGTTACGTGTTTTGACCTGGAACAACATTTGACACATGTCTTTTGATCTCATTGTCTGTTTTTCAAGCCCAATAAGAATTTGGGTCGAGCATTGTTTTAGGATCGACCATATACAGTACCTCTCTTTGCATTACAATGAAGAGCAGTTAATTTGGGTCAaaaaa ] [+] EMBL BI796271 [ gggTTCGATGCTCGGCGTGGTCCGTGAGATC CCGCCGGAGCTCATCCTCCCGGACAACATCCTCCC AACAAGGCTCAGAAGGCTGTTGCTCACTGAATGTTTTGTCAAGCTCCCGCTTGGGAAAAGCTTGGTTTTTTTGTTACGTGTTTTGACCTGGAACAACATTTGACACATGTCTTTTGATCTCATTGTCTGTTTTTCAAGCCCAATAAGAATTTGGGTCGAGCATTGTTTTAGGATCGACCATATACAGTACCTCTCTTTGCATTAC ATGAAGAGCAGTTAATTTGGGTCACTTTTTACAaaaa ] consensusID : consensus_14372#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1136 fasta sequence [TCTCACCTCGGCGGCGGGCGGCGGCCGGCGGCGAGGTCCGGACAGCGGAGGGAGCAAGCGGGGAGGACGAGGCATGGGGACCCTGGGGCGGGCGATCTACACGGCGGGGAAGTGGATCCGCGGCACGGGGCAGGCCATGGACCGCCTCGGATCCACCATCCAGGGCGGCCTCCGCGTCGACGAGCAGCTGCCAAGGCATCGCACAATCATGAACATATTTGAGAAAGAGCCCAGAATCCACAAGGATGTTTTTGTTGCTCCCAGTGCAGCTGTGATTGGTGATATTGAGATTGGACATGGATCCTCAATCTGGTATGGCTCCATTTTAAGAGGTGATGTCAACAGCATTCATATTGGAGTTGGAACAAATATACAAGACAATTCCCTTGTACATGTTTCAAAAGCTAATATCAGTGGGAAGGTTCTCCCAACCATAATTGGAAACAGTGTTACAATAGGTCACAGTGCTGTTCTACACGCATGCATCGTCGAGGATGAAGCTTTTGTTGGTATGGGTGCCACTCTGCTTGATGGAGTGGTGGTTGAAAAGCACAGCATGGTTGGTGCAGGATCCCTTGTAAAGCAAAACACCAGGATTCCTTCTGGAGAGGTCTGGGTTGGTAATCCTGCCAAGTTCCTAAGAAAGCTTACTGAAGAGGAGATGGCGTTCATTGCACAGTCAGCAACAAACTATATCAATTTGGCTCAAGTCCACGCAGCCGAGAATGCCAAGACCTTCGATGAGATTGAGCTCGAGAAGATGCTGAGGAAGAAGTTTGCGCACAAAGACGAGGAGTACGATTCGATGCTCGGCGTGGTCCGTGAGATCCCACCAGAGCTTATCCTCCCGGACAGTATCCTCCCAAACAAGGCTCAAAAAGCTGTTGCTCACTGAGTGTTTTCTTAAAGCTCCCGCTTGGGAAGCTTTGCTGTTATTACATGTTGACTTGTTTATGACAGTTTTGTCTGTCCGTAGAGGAAAAGGAAGTCAATTGGTTCCCCTGCTTTTGACTTGCTTGCTTGATAGATGTGAAGTTCAAGTTATTTGATACTAAATAGCTGTAGTGTGAAAAAGTCAGTGAGCTCAGAAAGTAGAAATTTTGAGGATTTTCGTGGGTGCAGAACTAATTTATGCA] [+] EMBL AK060158 [TCTCACCTCGGCGGCGGGCGGCGGCCGGCGGCGAGGTCCGGACAGCGGAGGGAGCAAGCGGGGAGGACGAGGCATGGGGACCCTGGGGCGGGCGATCTACACGGCGGGGAAGTGGATCCGCGGCACGGGGCAGGCCATGGACCGCCTCGGATCCACCATCCAGGGCGGCCTCCGCGTCGACGAGCAGCTGCCAAGGCATCGCACAATCATGAACATATTTGAGAAAGAGCCCAGAATCCACAAGGATGTTTTTGTTGCTCCCAGTGCAGCTGTGATTGGTGATATTGAGATTGGACATGGATCCTCAATCTGGTATGGCTCCATTTTAAGAGGTGATGTCAACAGCATTCATATTGGAGTTGGAACAAATATACAAGACAATTCCCTTGTACATGTTTCAAAAGCTAATATCAGTGGGAAGGTTCTCCCAACCATAATTGGAAACAGTGTTACAATAGGTCACAGTGCTGTTCTACACGCATGCATCGTCGAGGATGAAGCTTTTGTTGGTATGGGTGCCACTCTGCTTGATGGAGTGGTGGTTGAAAAGCACAGCATGGTTGGTGCAGGATCCCTTGTAAAGCAAAACACCAGGATTCCTTCTGGAGAGGTCTGGGTTGGTAATCCTGCCAAGTTCCTAAGAAAGCTTACTGAAGAGGAGATGGCGTTCATTGCACAGTCAGCAACAAACTATATCAATTTGGCTCAAGTCCACGCAGCCGAGAATGCCAAGACCTTCGATGAGATTGAGCTCGAGAAGATGCTGAGGAAGAAGTTTGCGCACAAAGACGAGGAGTACGATTCGATGCTCGGCGTGGTCCGTGAGATCCCACCAGAGCTTATCCTCCCGGACAGTATCCTCCCAAACAAGGCTCAAAAAGCTGTTGCTCACTGAGTGTTTTCTTAAAGCTCCCGCTTGGGAAGCTTTGCTGTTATTACATGTTGACTTGTTTATGACAGTTTTGTCTGTCCGTAGAGGAAAAGGAAGTCAATTGGTTCCCCTGCTTTTGACTTGCTTGCTTGATAGATGTGAAGTTCAAGTTATTTGATACTAAATAGCTGTAGTGTGAAAAAGTCAGTGAGCTCAGAAAGTAGAAATTTTGAGGATTTTCGTGGGTGCAGAACTAATTTATGCA] [+] EMBL CB000217 [ GGGGAGGACGAGGCATGGGGACCCTGGGGCGGCCTATCTACACGGCGGGGAAGTGGATCCGCGGCACGGGGCAGGCCATGGACCGCCTCGGATCCACCATCCAGGGCGGCCTCCGCGTCGACGAGCAGCTGCCAAGGCATCGCACAATCATGAACATATTTGAGAAAGAGCCCAGAATCCACAAGGATGTTTTTGTTGCTCCCAGTGCAGCTGTGATTGGTGATATTGAGATTGGACATGGATCCTCAATCTGGTATGGCTCCATTTTAAGAGGTGATGTCAACAGCATTCATATTGGAGTTGGAACAAATATACAAGACAATTCCCTTGTACATGTTTCAAAAGCTAATATCAGTGGGAAGGTTCTCCCAACCATAATTGGAAACAGTGTTACAATAGGTCACAGTGCTGTTCTACACGCATGCATCGTCGAGGATGAAGCTTTTGTTGGTATGGGTGCCACTCTGCTTGATGGAGTGGTGGTTGAAAAGCACAGCATGGTTGGTGCAGGATCCCTTGTAAAGCAAAACACCAGGATTCCTTCTGGAGAGGTCTGGGTTGGTAATCCTGCCAAGTTCCTAAGAAAGCTTACTGAAGAGGAGATGGCGTTCATTGCACAGTCAGCAACAAACTATATCAATTTGGCTCAAGTCCACGCACCCGAGAATGCCCAGACCTTCGATGAGATTG ] consensusID : consensus_14372#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence [TTCTCAGACACTGATATACGATGCTTACAATCGTTCTTTGTTCCACAACATATCTAATCGTTTGGATAATGGAATTGAGTGATTCCAAGGTAGAGGTTTAGTCTACATATTTATTTTTCCAAAGAACAATTACTTTAAAGTTACAATGCATTGATGACATATTTACATGAATCTGTGTAGTTTTTCTTTCCTTATTTCAAAACCTGTAATTGGGGACTGGAGGATAACCAAAGTACCAAACAACGCTGCATGTTTATACTGATGTCCATATTTTACGTTCCATGCTATTGCTATGAACAGCTGCGAGACTTGAATATCTTTTGGTATTTATATTGTATATAACTTAATATATTACATGACTTTATTGAACCATATGGTTTCTTGACACTGCTAGGTCTGGGTCGGTAATCCTGCCAAGTTCCTAAGAAAGCTTACTGAAGAGGAGATAGCGTTCATTGCTCAGTCAGCAACGAACTACATCAATCTGGCCCAAGTCCATGCTGCCGAGAATTCCAAGACCTTCGACGAGATCGAGCTCGAGAAGATGCTGAGGAAAAAGTATGCCCACAAAGACGAGGAGTATGATTCGATGCTCGGCGTGGTCCGTGAGATCCCGCCGGAGCTCATCCTCCCGGACAACATCCTC] [-] EMBL CB638506 [TTCTCAGACACTGATATACGATGCTTACAATCGTTCTTTGTTCCACAACATATCTAATCGTTTGGATAATGGAATTGAGTGATTCCAAGGTAGAGGTTTAGTCTACATATTTATTTTTCCAAAGAACAATTACTTTAAAGTTACAATGCATTGATGACATATTTACATGAATCTGTGTAGTTTTTCTTTCCTTATTTCAAAACCTGTAATTGGGGACTGGAGGATAACCAAAGTACCAAACAACGCTGCATGTTTATACTGATGTCCATATTTTACGTTCCATGCTATTGCTATGAACAGCTGCGAGACTTGAATATCTTTTGGTATTTATATTGTATATAACTTAATATATTACATGACTTTATTGAACCATATGGTTTCTTGACACTGCTAGGTCTGGGTCGGTAATCCTGCCAAGTTCCTAAGAAAGCTTACTGAAGAGGAGATAGCGTTCATTGCTCAGTCAGCAACGAACTACATCAATCTGGCCCAAGTCCATGCTGCCGAGAATTCCAAGACCTTCGACGAGATCGAGCTCGAGAAGATGCTGAGGAAAAAGTATGCCCACAAAGACGAGGAGTATGATTCGATGCTCGGCGTGGTCCGTGAGATCCCGCCGGAGCTCATCCTCCCGGACAACATCCTC] consensusID : consensus_14372#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [CATCGCACGATCATGAACATATTTGAGAAAGAGCCCAGAGTCCACAAGGATGTTTTTGTTGCTCCCAGTGCAGCTGTGATTGGCGATGTTGAGATCGGACATGGATCCTCAATCTGGTACGGCTCCATTTTAAGAGGTAAGCTCTTTGTCAATAAACACTAGTATTGATACATGTGCTACTAATAAGCATGGGCTTTGTCTTGATAATTATATATCTCACCTTTCTTCTTGGCAACAAGTATGTTTACTGTGCATTTTGTTTTCAGAGTAAACTTGCTTCTAACTGCACTTCATCTATTGCTATGGTATATAGAAAACTGACATAACTGCCAGTTGTCAGGAGATGCACAGTTTTATCAAAGCACACCATGTTTTCATTGTTAGACTCTCAATCGACACTTCGCATGAAACTTCAGTTTTTTACCTTTATTCGACGAAGTGTCAATCAAGGTTTATCCTACCGCTAGTAGACTATTTACTGACCTCCGGCAGTAGCACGATTACCGCAACAAATTCGTATTCCAAATTTTGAACTCCCTGCAGTAATACACGGTTACGTGCGGTAACCACTGTGTGTCGAAGCTGGAAGAAAAAGAATGCAGGAAAAATTG] [+] EMBL CB638505 [CATCGCACGATCATGAACATATTTGAGAAAGAGCCCAGAGTCCACAAGGATGTTTTTGTTGCTCCCAGTGCAGCTGTGATTGGCGATGTTGAGATCGGACATGGATCCTCAATCTGGTACGGCTCCATTTTAAGAGGTAAGCTCTTTGTCAATAAACACTAGTATTGATACATGTGCTACTAATAAGCATGGGCTTTGTCTTGATAATTATATATCTCACCTTTCTTCTTGGCAACAAGTATGTTTACTGTGCATTTTGTTTTCAGAGTAAACTTGCTTCTAACTGCACTTCATCTATTGCTATGGTATATAGAAAACTGACATAACTGCCAGTTGTCAGGAGATGCACAGTTTTATCAAAGCACACCATGTTTTCATTGTTAGACTCTCAATCGACACTTCGCATGAAACTTCAGTTTTTTACCTTTATTCGACGAAGTGTCAATCAAGGTTTATCCTACCGCTAGTAGACTATTTACTGACCTCCGGCAGTAGCACGATTACCGCAACAAATTCGTATTCCAAATTTTGAACTCCCTGCAGTAATACACGGTTACGTGCGGTAACCACTGTGTGTCGAAGCTGGAAGAAAAAGAATGCAGGAAAAATTG] consensusID : consensus_14372#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 178 fasta sequence [GATCTCATTGTCTGTTTTTNAAGCCCAATAAGAATTTGGGTCGAGCNTTGTTTTAGGCTCGACCATNTNCAGTACCTCTCTTTGCATTNCAATGAAGNGCAGTTAATTTGGGTCNAAAANNNCCNCNCANNAANAANNANCNACNANACNAAAAACNAAAAANANNAANNANAAAAAA] [+] EMBL AU082389 [GATCTCATTGTCTGTTTTTNAAGCCCAATAAGAATTTGGGTCGAGCNTTGTTTTAGGCTCGACCATNTNCAGTACCTCTCTTTGCATTNCAATGAAGNGCAGTTAATTTGGGTCNAAAANNNCCNCNCANNAANAANNANCNACNANACNAAAAACNAAAAANANNAANNANAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14372#0 TATTGGAGCAAAACCATTTCCTTCTCTCCTGCCTCCTTGGGCTCATCTCTCTCTCTCTCA 60 consensus_14372#4 ------------------------------------------------------------ consensus_14372#1 ------------------------------------------------------------ consensus_14372#2 ------------------------------------------------------------ consensus_14372#3 ------------------------------------------------------------ consensus_14372#0 CTCTTCTCCCTCTTCTCACCACCAGACGCCATCAAACCCCTACCTCCCGCGGCGGCGGCG 120 consensus_14372#4 ------------------------------------------------------------ consensus_14372#1 ------------------------------------------------------------ consensus_14372#2 ------------------------------------------------------------ consensus_14372#3 ------------------------------------------------------------ consensus_14372#0 GCGGCGGCGGCCGGCGGCGAGCTCCGGACAGACAGAGGAGGGCGCGACGGAGAGGGCGAG 180 consensus_14372#4 ------------------------------------------------------------ consensus_14372#1 ---------------TCTCACCTCGGCGGCGGGCGGCGGCCGGCGGCGAGGTCCGGACAG 45 consensus_14372#2 ------------------------------------------------------------ consensus_14372#3 ------------------------------------------------------------ consensus_14372#0 GAGGGAAGGAGGGAGGGAGGCGACAGGCATGGGGACCCTCGGGCGCGCGATCTACACGGT 240 consensus_14372#4 ------------------------------------------------------------ consensus_14372#1 CGGAGGGAGCAAGCGGGGAGGACGAGGCATGGGGACCCTGGGGCGGGCGATCTACACGGC 105 consensus_14372#2 ------------------------------------------------------------ consensus_14372#3 ------------------------------------------------------------ consensus_14372#0 GGGGAAGTGGATCCGCGGCACGGGGCAGGCCATGGACCGCCTCGGATCCACCATCCAGGG 300 consensus_14372#4 ------------------------------------------------------------ consensus_14372#1 GGGGAAGTGGATCCGCGGCACGGGGCAGGCCATGGACCGCCTCGGATCCACCATCCAGGG 165 consensus_14372#2 ------------------------------------------------------------ consensus_14372#3 ------------------------------------------------------------ consensus_14372#0 CGGCCTCCGCGTCGAGGAGCAGCTTTCAAGGCATCGCACGATCATGAACATATTTGAGAA 360 consensus_14372#4 ------------------------------------------------------------ consensus_14372#1 CGGCCTCCGCGTCGACGAGCAGCTGCCAAGGCATCGCACAATCATGAACATATTTGAGAA 225 consensus_14372#2 ---------------------------------------------------TTCTCAGAC 9 consensus_14372#3 -------------------------------CATCGCACGATCATGAACATATTTGAGAA 29 consensus_14372#0 AGAGCCCAGAGTCCACAAGGATGTTTTTGTTGCTCCCAGTGCAGCTGTGATTGGCGATGT 420 consensus_14372#4 ------------------------------------------------------------ consensus_14372#1 AGAGCCCAGAATCCACAAGGATGTTTTTGTTGCTCCCAGTGCAGCTGTGATTGGTGATAT 285 consensus_14372#2 ACTGATATACGATGCTTACAATCGTTCTTTGTTCCACAACATATCTAATCGTTTGGATAA 69 consensus_14372#3 AGAGCCCAGAGTCCACAAGGATGTTTTTGTTGCTCCCAGTGCAGCTGTGATTGGCGATGT 89 consensus_14372#0 TGAGATCGGACATGGATCCTCAATCTGGTACGGCTCCATTTTAAGAGGTGATGTCAACAG 480 consensus_14372#4 ------------------------------------------------------------ consensus_14372#1 TGAGATTGGACATGGATCCTCAATCTGGTATGGCTCCATTTTAAGAGGTGATGTCAACAG 345 consensus_14372#2 TGGAATTGAGT---GATTCCAAGGTAGAGGTTTAGTCTACATATTTATTTTTCCAAAGAA 126 consensus_14372#3 TGAGATCGGACATGGATCCTCAATCTGGTACGGCTCCATTTTAAGAGGTAAGCTCTTTGT 149 consensus_14372#0 CATTCATATTGGATCTGGATCAAATATACAAGACAATTCCCTTGTACATGTTGCAAAAGC 540 consensus_14372#4 ------------------------------------------------------------ consensus_14372#1 CATTCATATTGGAGTTGGAACAAATATACAAGACAATTCCCTTGTACATGTTTCAAAAGC 405 consensus_14372#2 CAATTACTTTAAAGTTACAATGCATTGATGACATATTTACATGAATCTGTGTAGTTTTTC 186 consensus_14372#3 CAAT-AAACACTAGTATTGATACATGTGCTACTAATAAGCATGGGCTTTGTCTTGATAAT 208 consensus_14372#0 TAACATCAGCGGGAAGGTTCTCCCAACCATAATTGGAAACAATGTTACAATAGGTCATAG 600 consensus_14372#4 ------------------------------------------------------------ consensus_14372#1 TAATATCAGTGGGAAGGTTCTCCCAACCATAATTGGAAACAGTGTTACAATAGGTCACAG 465 consensus_14372#2 TTTCCTTATTTCAAAACCTGTAATTGGGGACTGGAGGATAACCAAAGTACCAAACAACGC 246 consensus_14372#3 TATA--TATCTCACCTTTCTTCTTGGCAACAAGTATGTTTACTGTGCATTTTGTTTTCAG 266 consensus_14372#0 TGCTGTTCTGCACGCATGCACCGTCGAGGATGAAGCTTTTGTTGGTATGGGT-GCCACTC 659 consensus_14372#4 ------------------------------------------------------------ consensus_14372#1 TGCTGTTCTACACGCATGCATCGTCGAGGATGAAGCTTTTGTTGGTATGGGT-GCCACTC 524 consensus_14372#2 TGCATGTTTATACTGATGTCCATATTTTACGTTCCATGCTATTGCTATGAACAGCTGCGA 306 consensus_14372#3 AGTAAACTTGCTTCTAACTGCACTTCATCTATTGCTATGGTATATAGAAAACTGACATAA 326 consensus_14372#0 TGCTTGATGGAGTGGTCGTTGAAAAGCACAGCATGGTTGGTGCAGGATCGCTTGTTAAGC 719 consensus_14372#4 ------------------------------------------------------------ consensus_14372#1 TGCTTGATGGAGTGGTGGTTGAAAAGCACAGCATGGTTGGTGCAGGATCCCTTGTAAAGC 584 consensus_14372#2 GACTTGAATATCTTTTGGTATTTATATTGTATATAACTTAATATATTACATGACTTTATT 366 consensus_14372#3 CTGCCAGTTGTCAGGAGATGCACAGTTTTATCAAAGCACACCATGTTTTCATTGTTAGAC 386 consensus_14372#0 AGAACACAAGGATTCCTTCTGGAG---AGGTCTGGGTCGGTAATCCTGCCAAGTTCCTAA 776 consensus_14372#4 ------------------------------------------------------------ consensus_14372#1 AAAACACCAGGATTCCTTCTGGAG---AGGTCTGGGTTGGTAATCCTGCCAAGTTCCTAA 641 consensus_14372#2 GAACCATATGGTTTCTTGACACTGCT-AGGTCTGGGTCGGTAATCCTGCCAAGTTCCTAA 425 consensus_14372#3 TCTCAATCGACACTTCGCATGAAACTTCAGTTTTTTACCTTTATTCGACGAAGTGTCAAT 446 consensus_14372#0 GAAAGCTTACTGAAGAGGAGATAG--CGTTCATTG--CTCAGTCAGCAACG-AACTACAT 831 consensus_14372#4 ------------------------------------------------------------ consensus_14372#1 GAAAGCTTACTGAAGAGGAGATGG--CGTTCATTG--CACAGTCAGCAACA-AACTATAT 696 consensus_14372#2 GAAAGCTTACTGAAGAGGAGATAG--CGTTCATTG--CTCAGTCAGCAACG-AACTACAT 480 consensus_14372#3 CAAGGTTTATCCTACCGCTAGTAGACTATTTACTGACCTCCGGCAGTAGCACGATTACCG 506 consensus_14372#0 CAATCTGGCCCAAGTCCATGCTGCCGAGAATTCCAAGACCTTCGACGAGATCGAGCTCGA 891 consensus_14372#4 ------------------------------------------------------------ consensus_14372#1 CAATTTGGCTCAAGTCCACGCAGCCGAGAATGCCAAGACCTTCGATGAGATTGAGCTCGA 756 consensus_14372#2 CAATCTGGCCCAAGTCCATGCTGCCGAGAATTCCAAGACCTTCGACGAGATCGAGCTCGA 540 consensus_14372#3 CAACAAATTCGTATTCCAAATTTT---GAACTCCCTGCAGTAATACACGGTTACGTGCGG 563 consensus_14372#0 GAAGATGCTGAGGAAAAAGTATGCCCACAAAGACGAGGAGTATGATTCGATGCTCGGCGT 951 consensus_14372#4 ------------------------------------------------------------ consensus_14372#1 GAAGATGCTGAGGAAGAAGTTTGCGCACAAAGACGAGGAGTACGATTCGATGCTCGGCGT 816 consensus_14372#2 GAAGATGCTGAGGAAAAAGTATGCCCACAAAGACGAGGAGTATGATTCGATGCTCGGCGT 600 consensus_14372#3 TAACCACTGTGTGTCGAAGCTGGAAGAAAAAGAATGCAGGAAAAATTG------------ 611 consensus_14372#0 GGTCCGTGAGATCCCGCCGGAGCTCATCCTCCCGGACAACATCCTCCCAAACAAGGCTCA 1011 consensus_14372#4 ------------------------------------------------------------ consensus_14372#1 GGTCCGTGAGATCCCACCAGAGCTTATCCTCCCGGACAGTATCCTCCCAAACAAGGCTCA 876 consensus_14372#2 GGTCCGTGAGATCCCGCCGGAGCTCATCCTCCCGGACAACATCCTC-------------- 646 consensus_14372#3 ------------------------------------------------------------ consensus_14372#0 GAAGGCTGTTGCTCACTGAATGTTTTGTCAAGCTCCCGCTTGGGAAAAGCTTGGTTTTTT 1071 consensus_14372#4 ------------------------------------------------------------ consensus_14372#1 AAAAGCTGTTGCTCACTGAGTGTTTTCTTAAAGCTCCCGCTTGGGAAGCTTTGCTGTTAT 936 consensus_14372#2 ------------------------------------------------------------ consensus_14372#3 ------------------------------------------------------------ consensus_14372#0 TGTTACGTGTTTTGACCTGGAACAACATTTGACACATGTCTTTTGATCTCATTGTCTGTT 1131 consensus_14372#4 --------------------------------------------GATCTCATTGTCTGTT 16 consensus_14372#1 TACATGTTGACTTG-------------------------TTTATGACAGTTTTGTCTGTC 971 consensus_14372#2 ------------------------------------------------------------ consensus_14372#3 ------------------------------------------------------------ consensus_14372#0 TTTCAAGCCCAATAAGAATTTGGGTCGAGCAT-TGTTTTAGGATCGACCATATACAGTAC 1190 consensus_14372#4 TTTNAAGCCCAATAAGAATTTGGGTCGAGCNT-TGTTTTAGGCTCGACCATNTNCAGTAC 75 consensus_14372#1 CGTAGAGG--AAAAGGAAGTCAATTGGTTCCCCTGCTTTTGACTTGCTTGCTTGATAGAT 1029 consensus_14372#2 ------------------------------------------------------------ consensus_14372#3 ------------------------------------------------------------ consensus_14372#0 CTCTCTTTGCATTACAATGAAGAGCAGTTAATTTGG-GTCACTTTTTACATCTTTACT-G 1248 consensus_14372#4 CTCTCTTTGCATTNCAATGAAGNGCAGTTAATTTGG-GTCNAAAANNNCCNCNCANNAAN 134 consensus_14372#1 GTGAAGTTCAAGTTATTTGATACTAAATAGCTGTAGTGTGAAAAAGTCAGTGAGCTCAGA 1089 consensus_14372#2 ------------------------------------------------------------ consensus_14372#3 ------------------------------------------------------------ consensus_14372#0 AAGTAGAAACGCGTCCTCTGTCTGTGACAGTTTTTTTAAAAA----- 1290 consensus_14372#4 AANNANCNACNANACNAAAAACNAAAAANANNAANNANAAAAAA--- 178 consensus_14372#1 AAGTAGAAATTTTGAGGATTTTCGTGGGTGCAGAACTAATTTATGCA 1136 consensus_14372#2 ----------------------------------------------- consensus_14372#3 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||