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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14376#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1413 fasta sequence
[CCCCAACAAAAGGAAAAGCATTGGATAAGATGAACTTCAATCAATTTGCGGGCAAACCTTCCATGGAGCAAAGGGATCGAACGACCGCCGGAACCCCGTCGCACAGACGACGGCGTCGGCGCCACGGATCGCATCGACCAACTTGTCTGTGCCCTCCATGACGTCAGCCCTCACCTTCAATTCAGACCACACACATGCATTTCGTGCTATCATCACCAACAAATCAAGAACAACAGCACAAGCTGCACGGAACGGAACACTAGTACTAGTGTGTCTCTGCGCAACTCACGAGCTGGAGGTTTGGGTCCTGGGGCAGGCTTCTGCGGGCGCGGCCCACGTCTGTCGTGCCGGCGACCACGCCGAAGCCCCTCTCCAGAAGCTTCTCCACGACCCGCTTGCCGGTGCGGCCCGTCGAGCCGGCCACGAAGACGGTGGTCGTCTTCTTGGCGTCCGACGAACTAGCGGGCGCGGAGTCTATGGTGGAGACCGCCGTGGAGGTGAGGCTAAGCTTTCTGGTGGCGGGGCGGGGGCCGGGGCAGAGGCAAGCGAACGCAGCGAGAGGAAGGCGGGGGCGGGCGGCGGCGATGGTGTGGAAAGCGGTGGCCATTAGATTCGTGTGGCTCCTGTTCTTTGCTGGTTAGAGATGTTTCTACTATTTTCTACTCCTAATTTCTAGTAGTGCTGTGGTGGTAGTAATAACTAAAAAATGGGCTCGCCTTCTAGGTAGCCTGTGCATATGACTTAAAAAAAAATTAATCAATATAGCCTCTTATATTAATGAGCTTGTCTATGGTGCTTTCTACAGGTATTCTACTACAAGTAGAAACGATCTAAACCATCCATTTTGAAGGGCATATTAATACTTACAAACTATGTGCTTAAGGGTAATTTGGGTATTTGTATTTTCCTTTTGTTTTAGTCTCGTATTGCTCCGACCATCTCGCCGCATCCATCCGCCGTCCGTTCCTGCACAGCCCGATTCCGGTGGTGGCGCCCATTTCGATCAGCCGGCGTTCATCCTGCCGCCGCCGTTTTATCTCACCGTCGGTGACCTCGATTATCCTGCCATCCTCCGCCCCTGGTATTCCCGCCATCGCTGATCCCTGTCTAGCCACCACGGCCGTGCCAACTGACTCCTTGCTGGCGACCACGCACATCTGCGCCGATCTCCTCCCTATCGACCACGGCCACGCCGATTTCTTCTGCCCTGACGACCGCGTCCACATCCGCGTTGACCTCCTCCTCCAACTGAACAGCTAGTATTTATTTTCGATTATCATGGTACTTGTGCGTTTGCTCCAAATCGAATTTGATTTCTTCGTTGTTGATAAGAAGAGGAACCTGCTACTGCTACTGCTGCTAGATTGCATATAGCGTTGTATACAAGTTCCAATTCGATTTATTGGATGTCAA]
[+] EMBL AK109778 [CCCCAACAAAAGGAAAAGCATTGGATAAGATGAACTTCAATCAATTTGCGGGCAAACCTTCCATGGAGCAAAGGGATCGAACGACCGCCGGAACCCCGTCGCACAGACGACGGCGTCGGCGCCACGGATCGCATCGACCAACTTGTCTGTGCCCTCCATGACGTCAGCCCTCACCTTCAATTCAGACCACACACATGCATTTCGTGCTATCATCACCAACAAATCAAGAACAACAGCACAAGCTGCACGGAACGGAACACTAGTACTAGTGTGTCTCTGCGCAACTCACGAGCTGGAGGTTTGGGTCCTGGGGCAGGCTTCTGCGGGCGCGGCCCACGTCTGTCGTGCCGGCGACCACGCCGAAGCCCCTCTCCAGAAGCTTCTCCACGACCCGCTTGCCGGTGCGGCCCGTCGAGCCGGCCACGAAGACGGTGGTCGTCTTCTTGGCGTCCGACGAACTAGCGGGCGCGGAGTCTATGGTGGAGACCGCCGTGGAGGTGAGGCTAAGCTTTCTGGTGGCGGGGCGGGGGCCGGGGCAGAGGCAAGCGAACGCAGCGAGAGGAAGGCGGGGGCGGGCGGCGGCGATGGTGTGGAAAGCGGTGGCCATTAGATTCGTGTGGCTCCTGTTCTTTGCTGGTTAGAGATGTTTCTACTATTTTCTACTCCTAATTTCTAGTAGTGCTGTGGTGGTAGTAATAACTAAAAAATGGGCTCGCCTTCTAGGTAGCCTGTGCATATGACTTAAAAAAAAATTAATCAATATAGCCTCTTATATTAATGAGCTTGTCTATGGTGCTTTCTACAGGTATTCTACTACAAGTAGAAACGATCTAAACCATCCATTTTGAAGGGCATATTAATACTTACAAACTATGTGCTTAAGGGTAATTTGGGTATTTGTATTTTCCTTTTGTTTTAGTCTCGTATTGCTCCGACCATCTCGCCGCATCCATCCGCCGTCCGTTCCTGCACAGCCCGATTCCGGTGGTGGCGCCCATTTCGATCAGCCGGCGTTCATCCTGCCGCCGCCGTTTTATCTCACCGTCGGTGACCTCGATTATCCTGCCATCCTCCGCCCCTGGTATTCCCGCCATCGCTGATCCCTGTCTAGCCACCACGGCCGTGCCAACTGACTCCTTGCTGGCGACCACGCACATCTGCGCCGATCTCCTCCCTATCGACCACGGCCACGCCGATTTCTTCTGCCCTGACGACCGCGTCCACATCCGCGTTGACCTCCTCCTCCAACTGAACAGCTAGTATTTATTTTCGATTATCATGGTACTTGTGCGTTTGCTCCAAATCGAATTTGATTTCTTCGTTGTTGATAAGAAGAGGAACCTGCTACTGCTACTGCTGCTAGATTGCATATAGCGTTGTATACAAGTTCCAATTCGATTTATTGGATGTCAA]
[+] EMBL BF430467 [ AGATGAACTTCAATCAATTTGCGGGCAAACCTTCCATGGAGCAAAGGGATCGAACGACCGCCGGAACCCCGTCGCACAGACGACGGCGTCGGCGCCACGGATCGCATCGACCAACTTGTCTGTGCCCTCCATGACGTCAGCCCTCACCTTCAATTCAGACCACACACATGCATTTCGTGCTATCATCACCATCAAATCAAGAACAACAGCACAAGCTGCACGGAACGGAACACTAGTACTAGTGTGTCTCTGCGCAACTCACGAGCTGGAGGTTTGGGTCCTGGGGCAGGCTTCTGCGGGCGCGGCCCACGTCTGTCGTGCCGGCGACCACGCCGAAGCCCCTCTCCAGAAGCTTCTCCACGACCCGCTTGCCGGTGCGGCCCGTCGAGCCGGCCACGAAGACGGTGGTCGTCTTCTTGGCGTCCGACGAACTAGCGGGCGCGGAGTCTATGGTGGAGACCGCCGTGGAGGTGAGGCTAAGCTTTCTGGTGGCGGGGCGGGGGCCGGGGCAGAGGCAAGCGAACGCAGCGAGAGGAAGGCGGGGGCGGGCGGCGGCGATGGTGTGGAAAGCGGTGGCCATTAGATTCGTGTGGCTCCTGTTCTTTGCTGGTTAGAGATGTTTCTACTATTTTCTACTCCTAATTTCTAGTTATGCTGT ]
consensusID : consensus_14376#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1132 fasta sequence
[NNTTTTTTTTTTTTATTTTTTATAACGATGATGTGGGTGTGCGTATTCCATTTTATAGTAAAGAACATTAAATCACTATATTAGGACAACTATTTTTCCTAACTAGGTATGAACACCCTGACACATCACTATACAATTTCTGGAATAATGCTAGCCCCCTTTGAAGTTCAGGGCCGGAACAACTTGTTCAGTTGTGCTCCGTTACTCAGCTTTGCTTAATAGAAGCAAACAGATCCTTGAGAGGACGATTGTGAGCTTCAGCTCGGGTGACAATCTCGACAACTTTGTAGGAAGATTCCTCTCGGCATAACAATGCCTCCACAGCTACTTCTGCGACTTGCTGTCTCGATATGGAGCCCTCGTAAAGTGTATCCTCTGGCTCCATGACTATATTCCCTGTTGGTGGTTGTTCAGTCAGGCCTCCAGGCCTTATAATGGTGTAATTTATTCCTGATGACCTGATATGTTTCTCCGCCTGCAGCTTTGCGACCAGCACTAAACCAAACAAGTTGAGCACAGTATATGCTGGATTCAACAGTTGACCCATCGCAGCCCCATTGACCAAAATGGAACTTACGAGTATGAATCTTGTAACCCCAGCCTTGCGGCATGCTTCAACAAGGTTTACTGTGCCAAAGTTGTCCACCTT-CCATGG-AGC-AAAGGGATCG-AACGACCGCCGG-AACCCCGTCGCACAGACG-ACGGCGTCGGCGCC-ACGGATCGCATCGACC-AACTTGTCTGTGCCCTCCATGACGTCAGCCCTCACGAGCTGGAGGTTTGGGTCC-TGGGGCAGGCTTCTGCGGGCGCGGCCCACGTCTGTCGTG-CCGGCGACCACGCCGAAGCCCCTCTCCAGAAGCTTCTCCACGACCCGCTTGCCGGTGCGGCCCGTCGAGCCGGCCACGAAGACGGTGGTCGTCTTCTTGGCGTCCGACGAACTAGCGGGCGCGGAGTCTATGGTGGAGACCGCCGTGGAGGTGAGGCTAAGCTTTCTGGTGGCGGGGCGGGGGCCGGGGCAGAGGCAAGCGAACGCAGCGAGAGGAAGGCGGGGGCGGGCGGCGGCGATGGTGTGGAAAGCGGTGGCCATTAGATTCGTGTGGCTCCTGTTCTTTGCTGGTTAGAGATGTTTCTACTATTT]
[-] EMBL AU096484 [NNTTTTTTTTTTTTTTTTTTTATAACGATGATGTGGGTGTGCGTATTCCATTTTATAGTAAAGAACATTAAATCACTATATTAGGACAACTATTTTTCCTAACTAGGNATGAACACCCTGACACATCACTATACAATTTCTGGAATAATGCTAGCCCCCTTTGAAGTTCAGGGCCGGAACAACTTGTTCAGTTGTGCTCCGTTACTCAGCTTTGCTTAATAGAAGCAAACAGATCCTNGAGAGGACGATTGTNAGCTTCAGCTCGGGTGACAATCTCGACAACTTTGTAGGAAGATTCCTCTCGGCATAACAATG ]
[-] EMBL AK105919 [ TTATAGTTTATAACGATGATGTGGGTGTGCGTATTCCATTTTATAGTAAAGAACATTAAATCACTATATTAGGACAACTATTTTTCCTAACTAGGTATGAACACCCTGACACATCACTATACAATTTCTGGAATAATGCTAGCCCCCTTTGAAGTTCAGGGCCGGAACAACTTGTTCAGTTGTGCTCCGTTACTCAGCTTTGCTTAATAGAAGCAAACAGATCCTTGAGAGGACGATTGTGAGCTTCAGCTCGGGTGACAATCTCGACAACTTTGTAGGAAGATTCCTCTCGGCATAACAATGCCTCCACAGCTACTTCTGCGACTTGCTGTCTCGATATGGAGCCCTCGTAAAGTGTATCCTCTGGCTCCATGACTATATTCCCTGTTGGTGGTTGTTCAGTCAGGCCTCCAGGCCTTATAATGGTGTAATTTATTCCTGATGACCTGATATGTTTCTCCGCCTGCAGCTTTGCGACCAGCACTAAACCAAACAAGTTGAGCACAGTATATGCTGGATTCAACAGTTGACCCATCGCAGCCCCATTGACCAAAATGGAACTTACGAGTATGAATCTTGTAACCCCAGCCTTGCGGCATGCTTCAACAAGGTTTACTGTGCCAAAGTTGTCCACCTT CCATGG AGC AAAGGGATCG AACGACCGCCGG AACCCCGTCGCACAGACG ACGGCGTCGGCGCC ACGGATCGCATCGACC AACTTGTCTGTGCCCTCCATGACGTCAGCCCTCACGAGCTGGAGGTTTGGGTCC TGGGGCAGGCTTCTGCGGGCGCGGCCCACGTCTGTCGTG CCGGCGACCACGCCGAAGCCCCTCTCCAGAAGCTTCTCCACGACCCGCTTGCCGGTGCGGCCCGTCGAGCCGGCCACGAAGACGGTGGTCGTCTTCTTGGCGTCCGACGAACTAGCGGGCGCGGAGTCTATGGTGGAGACCGCCGTGGAGGTGAGGCTAAGCTTTCTGGTGGCGGGGCGGGGGCCGGGGCAGAGGCAAGCGAACGCAGCGAGAGGAAGGCGGGGGCGGGCGGCGGCGATGGTGTGGAAAGCGGTGGCCATTAGATTCGTGTGGCTCCTGTTCTTTGCTGGTTAGAGATGTTTCTACTATTT]
[-] EMBL AK070247 [ TTATAGTTTATAACGATGATGTGGGTGTGCGTATTCCATTTTATAGTAAAGAACATTAAATCACTATATTAGGACAACTATTTTTCCTAACTAGGTATGAACACCCTGACACATCACTATACAATTTCTGGAATAATGCTAGCCCCCTTTGAAGTTCAGGGCCGGAACAACTTGTTCAGTTGTGCTCCGTTACTCAGCTTTGCTTAATAGAAGCAAACAGATCCTTGAGAGGACGATTGTGAGCTCCAGCTCGGGTGACAATCTCGACAACTTTGTAGGAAGATTCCTCTCGGCATAACAATGCCTCCACAGCTACTTCTGCGACTTGCTGTCTCGATATGGAGCCCTCGTAAAGTGTATCCTCTGGCTCCATGACTATATTCCCTGTTGGTGGTTGTTCAGTCAGGCCTCCAGGCCTTATAATGGTGTAATTTATTCCTGATGACCTGATATGTTTCTCCGCCTGCAGCTTTGCGACCAGCACTAAACCAAACAAGTTGAGCACAGTATATGCTGGATTCAACAGTTGACCCATCGCAGCCCCATTGACCAAAATGGAACTTACGAGTATGAATCTTGTAACCCCAGCCTTGCGGCATGCTTCAACAAGGTTTACTGTGCCAAAGTTGTCCACCTT CCATGG AGC AAAGGGATCG AATGACCGCCGG AACCCCGTCGCACAGACG ACGGCGTCGGCGCC ACGGATCGCATCGACC AACTTGTCTGTGCCCTCCATGACGTCAGCCCTCACGAGCTGGAGGTTTGGGTCC TGGGGCAGGCTTCTGCGGGCGCGGCCCACGTCTGTCGTG CCGGCGACCACGCCGAAGCCCCTCTCCAGAAGCTTCTCCACGACCCGCTTGCCGGTGCGGCCCGTCGAGCCGGCCACGAAGACGGTGGTCGTCTTCTTGGCGT ]
[-] EMBL AU057362 [ TTTTTATAACGATGATGTGGGTGTGCGTATTCCATTTTATAGTAAAGAACATTAAATCACTATATTAGGACAACTATTTTTCCTAACTAGGTATGAACACCCTGACACATCACTATACAATTTCTGGAATAATGCTAGCCCCCTTTGAAGTTCAGGGCCGGAACAACTTGTTCAGTTGTGCTCCGTTACTCAGCTTTGCTTAATAGAAGCAAACAGATCCTTGAGAGGACGATTGTGAGCTTCAGCTCGGGTGACAATCTCGACAACTTTGTAGGAAGATTCCTCTCGGCATAACAATGCCTCCACAGCTACTTCTGCGACTTGCTGTCTCGATATGGAGCCCTCGTAAAGTGTATCCTCTGGNTCCATGACTATATTCCCTGTTGGTGGTTGTTCAGTCAGGCCTCCAGGNCTTATAATGGTGNAATTTATTCCTGATGAC ]
[-] EMBL AU057430 [ TTTTTATAACGATGATGTGGGTGTGCGTATTCCATTTTATAGTAAAGAACATTAAATCACTATATTAGGACAACTATTTTTCCTAACTAGGTATGAACACCCTGACACATCACTATACAATTTCTGGAATAATGCTAGCCCCCTTTGAAGTTCAGGGCCGGAACAACTTGTTCAGTTGTGCTCCGTTACTCAGCTTTGCTTAATAGAAGCAAACAGATCCTTGAGAGGACGNTTGTGAGCTTCAGCTCGGGTGACAATCTCGACAACTTTGTAGGAAGATTCCTCTCGGNATAACA ]
[-] EMBL CF335848 [ AGCCCCATTGACCAAAATGGAACTTACGAGTATGAATCATGTAACCCCAGCCTTGCGGCATGCTTCAACAAGGTTTACTGTGCCAAAGTTGTCCACCTT CCATGG AGC AAAGGGATCG AACGACCGCCGG AACCCCGTCGCACAGACG ACGGCGTCGGCGCC ACGGATCGCATCGACC AACTTGTCTGTGCCCTCCATGACGTCAGCCCTCACGAGCTGGAGGTTTGGGTCC TGGGGCAGGCTTCTGCGGGCGCGGCCCACGTCTGTCGTG CCGGCGACCACGCCGAAGCCCCTCTCCAGAAGCTTCTCCACGACCCGCTTGCCGGTGCGGCCCGTCGAGCCGGCCACGAAGACGGTGGTCGTCTTCTTGGCGTCCGACGAACTAGCGGGCGCGGAGTCTATGGTGGAGACCGCCGTGGAGGTGAGGCTAAGCTTTCTGGTGGCGGGGCGGGGGCCGGGGCAGAGGCAAGCGAACGCAGCGAGAGGAtttctactc ]
[-] EMBL AU057429 [ CCTTCCCATGGAAGCAAAAGGGATCGAAACGACCGCCGGAAACCCCTTCGCACAGACGAACGGCGTCGGCGCCAACGGATCGCATCGACC AATTTGTCTGTGCCCTCCATGA GTCAGCCCTCACGAGCTGGAGGTTTGGGTCC TGGGGCAGGCTTCTGCGGGCGCGGCCCACGTCTGTCGTG CCGGCGACCACGCCGAAGCCCCTCTCCAGAAGCTTCTCCACGACCCGCTTGCCGGTGCGGCCCGTCGAGCCGGCCACGAAGACGGTGGTCGTCTTCTTGGCGTCCGACGAACTAGCGGGCGCGGAGTCTATGGTGGAGACCGCCGTGGAGGTGAGGCTAAGCTTTCTGGTGGCGGGGCGGGGGCCGGGGCAGAGGCAAGCGAACGCAGCGAGAGGAAGGCGGGGGCGGGNGGCGGCGATGGTGTGGAAAGCGGTGGCCATT ]
[-] EMBL OSS14711A [ TCGCATCGACCAAACTTGTCTGTGCCCTCCATAACGTNAGCCCTCACGAGCTGAAGGTTTNGGTCC TGGGGCAGGCTTCTGC GGCNCGGCCCACGTCTGTCGTG CC GCGACCACGCCGAAGCCCCTCTCCAGAAGCTTCTCCACGACCCGCTTGCCGGTNCGGCCCGTCGAGCCGGCCACGAAGACGGTGGTCGTCTTCTTGNCGTCCGACGAACTANCGGNCGCGNAGTCTATGGTGGAGACCGCCGTGGAGGTGAGGCTAAGCTTTCTGGTGGCGGGNCGGGGGCCGGGGCAGAGGCAAGCGAACGCAGCGAGAGGAAGGCGGGGGCGGGCGGCGGCGATGGTGTGGAAAGCGGTGGCCATTAGATTCG ]
[-] EMBL OSC7791 [ CATCGACN AACTTGTCTGTGCCCTCCATGACGTNAGCCCTCACGAGCTGGAGGTTTGGNTCC TGGGGCAGNCTTCTGC GGCGCGGCCCACGTCTGTCGTG CC GCGNCCCGGCCGAAGCCNCTCTCCAGAAGCTTCTCCACGACACGCTTNCCGGTNCGTNCCGTCGAGCCGGCCANGAAGACGGTGGTCGTCTTCTTNCCCTCCGACGAACTAGCGGGCGCGGANTCTATGGTGGAGACCGCCGTGGAGGTGAGGCTAAGCTTTCTGGTGGCGGGGCGGGGGCCGGGGCAGAGGCAAGCGAACGCAGCGAGAGGAAGGCGGGGGCGGNCGTCGGCGATGGTGTGGAAAGC ]
[-] EMBL AU057361 [ GGGTCCTTGGGGCAGGCTTTTNCGGGCGCGGCCCACGTCTNTCGTGCCCGGCGACCACGCCGAAGCCCNTCTCCAGAAGCTTCTCCACGACCCGCTTGCCGGTGCGGCCCNTCGAGCCGGCCACGAAGACGNTGGTCGTCTTCTTGGCGTCCGACGAACTAGCGGGCGCGGAGTCTATGGTGGAGACCGCCGTGGAGGTGAGGCTAAGCTTTCTGGTGGCGGGGCGGGGGCCGGGGCAGAGGCAAGCGAACGCAGCGAGAGGAAGGCGGGGGCGGNCNGCGGCGATGGTGTGGAAAGCGGTGGCCATT ]
[-] EMBL OSS12809A [ CGGCCACGAAGACGGTGGTCGTCTTCTTGGCGTCCGACGAACTAGCGGGCGCGGAGTCTATGGTGGAGACCGCCGTGGAGGTGAGGCTAAGCTTTCTGGTGGCGGGGCGGGGGCCGGGGCAGAGGCAAGCGAACGCAGCGAGAGGAAGGCGGGGGCGGGCGGCGGCGATGGTGTGGAAAGCGGTGGCCAT ]
consensusID : consensus_14376#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence
[CCCTTTGCTCCATGGAAGGTGGACAACTTTGGCACAGTAAACCCTTGTTGAAAGCATGCCCGCAAGGCTGGGGTTACAAGATTCATACTCGTAAGTTCCATTTTGGTCAATGGGGCTGCGATGGGTCAACTGTTGAATCCAGCATATACTGTGCTCAACTTGTTTGGTTTAGTGCTGGTCGCAAAGCTGCAGGCGGAGAAACATATCAGGTCATCAGGAATAAATTACACCATTATAAGGCCTGGAGGCCTGACTGAACAACCACCAACAGGGAATATAGTCATGGAGCCAGAGGATACACTTTACGAGGGCTCCATATCGAGACAGCAAGTCGCAGAAGTAGCTNTGGAGGCATTGTTATGCCGAGAGGAATCTTCCCTACAAAGTTGTCGAGATTGTCACCCGAGCTGAAGCTCACAATCGTCCTCTCAAGGATCTGTTTGCTTCTATTAAGCAAAGCTGAGTAACGGAGCACAACTGAACAAGTTGTTCCGGCCCTGAACTTCAAAGGGGGCTAGCATTATTCCAGAAATTGTATAGTGATGTGTCAGGGTGTTCATACCTAGTTAGGAAAAATAGTTGTCCTAATATAGTGATTTAATGTTCTTTACTATAAAATGGAATACGCACACCCACATCATCGTTATAAACTATAATTCTCACATCATATCACCGAGCAAAAAAAAAAAAAAAAA]
[+] EMBL AU096683 [CCCTTTGCTCCATGGAAGGTGGACAACTTTGGCACAGTAAACCCTTGTTGAAAGCATGCCCGCAAGGCTGGGGTTACAAGATTCATACTCGTAAGTTCCATTTTGGTCAATGGGGCTGCGATGGGTCAACTGTTGAATCCAGCATATACTGTGCTCAACTTGTTTGGTTTAGTGCTGGTCGCAAAGCTGCAGGCGGAGAAACATATCAGGTCATCAGGAATAAATTACACCATTATAAGGCCTGGAGGCCTGACTGAACAACCACCAACAGGGAATATAGTCATGGAGCCAGAGGATACACTTTACGAGGGCTCCATATCGAGACAGCAAGTCGCAGAAGTAGCTNTGGAGGCATTGTTATGCCGAGAGGAATCTTCCCTACAAAGTTGTCGAGATTGTCACCCGAGCTGAAGCTCACAATCGTCCTCTCAAGGATCTGTTTGCTTCTATTAAGCAAAGCTGAGTAACGGAGCACAACTGAACAAGTTGTTCCGGCCCTGAACTTCAAAGGGGGCTAGCATTATTCCAGAAATTGTATAGTGATGTGTCAGGGTGTTCATACCTAGTTAGGAAAAATAGTTGTCCTAATATAGTGATTTAATGTTCTTTACTATAAAATGGAATACGCACACCCACATCATCGTTATAAACTATAATTCTCACATCATATCACCGAGCAAAAAAAAAAAAAAAAA]
consensusID : consensus_14376#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 639 fasta sequence
[GATACGCTAGTAACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTATAGTAAAGAACATTAAATCACTATATTAGGACAACTATTTTTCCTAACTAGGTATGAACACCCTGACACATCACTATACAATTTCTGGAATAATGCTAGCCCCCTTTGAAGTTCA-GGGCCGGAACAACTTGTTCAGTTGTGCTCCGTTACTCAGCTTTGCTTAATAGAAGCAAACAGATCCTTGAGAGGACGATTGTGAGCTTCAGCTCGGGTGACAATCTCGACAACTTTGTAGGAAGATTCCTCTCGGCATAACAATGCCTCCACAGCTACTTCTGCGACTTGCTGTCTCGATATGGAGCCCTCGTAAAGTGTATCCTC-TGGCTCCATGACTATATTCC-C-TGTTGGGTGGTTGTTCAGTCAGGCCTCCAGGCCTTATAATGGTGTAATTTATTCCTGATGACCTGATATGTTTCTCCGCCTGCAGCTTTGCGACCAGCACTAAACCAAACAAGTTGAGCACAGTATATGCTGGATTCAACAGTTGACCCATCGCAGCCCCATTGACCAAAATGGAACTTACGAGTATGAATCATGTAACCCCAGCCTTGCGGCATGCTTCAACAAGGTTTACTGTGCCAAAGTTGTCCACC]
[+] EMBL CF335847 [GATACGCTAGTAACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTATAGTAAAGAACATTAAATCACTATATTAGGACAACTATTTTTCCTAACTAGGTATGAACACCCTGACACATCACTATACAATTTCTGGAATAATGCTAGCCCCCTTTGAAGTTCA GGGCCGGAACAACTTGTTCAGTTGTGCTCCGTTACTCAGCTTTGCTTAATAGAAGCAAACAGATCCTTGAGAGGACGATTGTGAGCTTCAGCTCGGGTGACAATCTCGACAACTTTGTAGGAAGATTCCTCTCGGCATAACAATGCCTCCACAGCTACTTCTGCGACTTGCTGTCTCGATATGGAGCCCTCGTAAAGTGTATCCTC TGGCTCCATGACTATATTCC C TGTTGGGTGGTTGTTCAGTCAGGCCTCCAGGCCTTATAATGGTGTAATTTATTCCTGATGACCTGATATGTTTCTCCGCCTGCAGCTTTGCGACCAGCACTAAACCAAACAAGTTGAGCACAGTATATGCTGGATTCAACAGTTGACCCATCGCAGCCCCATTGACCAAAATGGAACTTACGAGTATGAATCATGTAACCCCAGCCTTGCGGCATGCTTCAACAAGGTTTACTGTGCCAAAGTTGTCCACC]
[-] EMBL BI807142 [ TTTTTAGTAAAGAACATTAAATCACTATATTAGGACAACTATTTTTCCTAACTAGGTATGAACACCCTGACACATCACTATACAATTTCTGGAATAATGCTAGCCCCCTTTGAAGTTCAGGGGCCGGAACAACTTGTTCAGTTGTGCTCCGTTACTCAGCTTTGCTTAATAGAAGCAAACAGATCCTTGAGAGGACGATTGTGAGCTTCAGCTCGGGTGACAATCTCGACAACTTTGTAGGAAGATTCCTCTCGG ATAACAATGCCTCCACAGCTACTTCTGCGACTTGCTGTCTCGATATGGAGCCCTCGTAAAGTGTATCCTCNTGGCTCCATGACTATATTCCACGTGCTGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14376#1 ------------------------------------------------------------
consensus_14376#3 ------------------------------------------------------------
consensus_14376#0 CCCCAACAAAAGGAAAAGCATTGGATAAGATGAACTTCAATCAATTTGCGGGCAAACCTT 60
consensus_14376#2 ------------------------------------------------------------
consensus_14376#1 ------------------------------------------------------------
consensus_14376#3 ------------------------------------------------------------
consensus_14376#0 CCATGGAGCAAAGGGATCGAACGACCGCCGGAACCCCGTCGCACAGACGACGGCGTCGGC 120
consensus_14376#2 ------------------------------------------------------------
consensus_14376#1 ------------------------------------------------------------
consensus_14376#3 ------------------------------------------------------------
consensus_14376#0 GCCACGGATCGCATCGACCAACTTGTCTGTGCCCTCCATGACGTCAGCCCTCACCTTCAA 180
consensus_14376#2 ------------------------------------------------------------
consensus_14376#1 -----------------------------------------------NNTTTTTTTTTTT 13
consensus_14376#3 --------------------------------------------------------GATA 4
consensus_14376#0 TTCAGACCACACACATGCATTTCGTGCTATCATCACCAACAAATCAAGAACAACAGCACA 240
consensus_14376#2 ----------------------------------------------CCCTTTGCTCCATG 14
consensus_14376#1 TATTTTTTATAACGATGATGTGGGTGTGCGTATTCCATTTTATAGTAAAGAACATTAAAT 73
consensus_14376#3 CGCTAGTAACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTATAGTAAAGAACATTAAAT 64
consensus_14376#0 AGCTGCACGGAACGGAACACTAGTACTAGTGTGTCTCTGCGCAACTCACGAGCTGGAGGT 300
consensus_14376#2 GAAGGTGGACAACTTTGGCACAGTAAACCCTTGTTGAAAGCATGCCCGCAAGGCTGGGGT 74
* * * *
consensus_14376#1 CACTATATTAGGACAACTATTTTTCCTAACTAGGTATGAACACCCTGACAC--ATCACTA 131
consensus_14376#3 CACTATATTAGGACAACTATTTTTCCTAACTAGGTATGAACACCCTGACAC--ATCACTA 122
consensus_14376#0 TTGGGTCCTGGGGCAGGCTTCTGCGGGCGCGGCCCACGTCTGTCGTGCCGGCGACCACGC 360
consensus_14376#2 TACAAGATTCATACTCGTAAGTTCCATTTTGGTCAATGGG-GCTGCGATGG-GTCAACTG 132
* * * * * * **
consensus_14376#1 TACAATTTCTGGAATAATGCTAGCCCCCTTTGAAGTTCAGGGCCGGAACAACTTGTTCAG 191
consensus_14376#3 TACAATTTCTGGAATAATGCTAGCCCCCTTTGAAGTTCAGGGCCGGAACAACTTGTTCAG 182
consensus_14376#0 CGAAGCCCCTCTCCAGAAGCTTCTCCACGACCCGCTT----GCCGGTGCGGCCCGTCGAG 416
consensus_14376#2 TTGAATCCAGCATATACTGTGCTCAACTTGTTTGGTT------TAGTGCTGGTCGCAAAG 186
* * ** * * * **
consensus_14376#1 TTGTGCTCCGTTACTCAGCTTTGCTTAATAGAAGCAAAC-AGATCCTTG-AGAG----GA 245
consensus_14376#3 TTGTGCTCCGTTACTCAGCTTTGCTTAATAGAAGCAAAC-AGATCCTTG-AGAG----GA 236
consensus_14376#0 CCGGCCACGAAGACGGTGGTCGTCTTCTTGGCGTCCGAC-GAACTAGCG-GGCGCGGAGT 474
consensus_14376#2 CTGCAGGCGGAGAAACATATCAGGTCATCAGGAATAAATTACACCATTATAAGGCCTGGA 246
* * * * * * * * * *
consensus_14376#1 CGATTGTGAGCTTCAGCTCGGGTGACAATCTCGACAACTTTGTAGGAAGATTCCTCTCGG 305
consensus_14376#3 CGATTGTGAGCTTCAGCTCGGGTGACAATCTCGACAACTTTGTAGGAAGATTCCTCTCGG 296
consensus_14376#0 CTATGGTGGAGACCGCCGTGGAGGTGAGGCTAAGCTTTCTGGTGGCGGGGCGGGGGCCGG 534
consensus_14376#2 GGCCTGACTGAACAACCACCAACAGGGAATATAGTCATGGAGCCAGAGGATACACTTTAC 306
* * * *
consensus_14376#1 --CATAACAATGCCTCCACAGCTACTTCTGCGACTTGCTGTCTCGATATGGAGCCCTCGT 363
consensus_14376#3 --CATAACAATGCCTCCACAGCTACTTCTGCGACTTGCTGTCTCGATATGGAGCCCTCGT 354
consensus_14376#0 GGCAGAGGCAAGCGAACGCAGCGAGAGGAAGGCGGGGGCGGGCGGCGGCGATGGTGTGGA 594
consensus_14376#2 GAGGGCTCCATATCGAGACAGCAAGTCGCAGAAGTAGCTNTGGAGGCATTGTTATGCCGA 366
* **** * * * *
consensus_14376#1 AAAGTGTATCCTCTGGCTCCATGA---CTATATTCCCTGTTGG-TGGT--TGTTCAGTCA 417
consensus_14376#3 AAAGTGTATCCTCTGGCTCCATGA---CTATATTCCCTGTTGGGTGGT--TGTTCAGTCA 409
consensus_14376#0 AAGCGGTGGCCATTAGATTCGTGTGGCTCCTGTTCTTTGCTGGTTAGAGATGTTTCTACT 654
consensus_14376#2 GAGGAATCTTCCCTACAAAGTTGT---CGAGATTGTCACCCGAGCTGA--AGCTCA--CA 419
* * * * ** ** * * * * *
consensus_14376#1 GGCCTCCAGGCCTTAT-------AATGGTGTAATT-TATTCCTGATGACCTGATATGTTT 469
consensus_14376#3 GGCCTCCAGGCCTTAT-------AATGGTGTAATT-TATTCCTGATGACCTGATATGTTT 461
consensus_14376#0 ATTTTCTACTCCTAATTTCTAGTAGTGCTGTGGTGGTAGTAATAACTAAAAAATGGGCTC 714
consensus_14376#2 ATCGTCCTCTC------------AAGGATCTGTTT--GCTTCTATTAAGCAAAGCTGAGT 465
** * * * * * * * * * * *
consensus_14376#1 CTCCGCCTGCAGCTTTGCGACCAGCACTAAACCAAACAAGTTGAGCACAGTA-TATGCTG 528
consensus_14376#3 CTCCGCCTGCAGCTTTGCGACCAGCACTAAACCAAACAAGTTGAGCACAGTA-TATGCTG 520
consensus_14376#0 GCCTTCTAGGTAGCCTGTGCATATGACTTAA--AAAAAAATTAATCAATATAGCCTCTTA 772
consensus_14376#2 AACGGAGCACAACTGAACAAGTTGTTCCGGCCCTGAACTTCAAAGGGGGCTAGCATTAT- 524
* * * * ** * *
consensus_14376#1 GATTCAACAGTTGACCCATCGCAGCCCCATTGACCAAAATGGAACTTACGAGTATGAATC 588
consensus_14376#3 GATTCAACAGTTGACCCATCGCAGCCCCATTGACCAAAATGGAACTTACGAGTATGAATC 580
consensus_14376#0 TATTAATGAGCTTGTCTATGGTG---CTTTCTACAGGTATTCTACT-ACAAGTAGAAACG 828
consensus_14376#2 --TCCAGAAATTGTATAGTGATGTGTCAGGGTGTTCATACCTAGTTAGGAAAAATAGTTG 582
* * * * * * * * * *
consensus_14376#1 TTGTAACCCCAGCCTTGCGGCATGCTTCAACAAGGTTTAC------TGTGCCAAAGTTGT 642
consensus_14376#3 ATGTAACCCCAGCCTTGCGGCATGCTTCAACAAGGTTTAC------TGTGCCAAAGTTGT 634
consensus_14376#0 ATCTAAACC-ATCCATTTTGAAGGGCATATTAATACTTACAAACTATGTGCTTAAGG-GT 886
consensus_14376#2 TCCTAATAT-AGTGATTTAATGTTCTTTACTATAAAATGGAATACGCACACCCACATCAT 641
*** * * * * * * * *
consensus_14376#1 CCACCTTCCATGGAGCAAAGGGATCGAACGACCGCCGGAACCCCGTCGCACAGACGACGG 702
consensus_14376#3 CCACC------------------------------------------------------- 639
consensus_14376#0 AATTTGGGTATTTGTATTTTCCTTTTGTTTTAGTCTCGTATTGCTCCGACCATCTCGCCG 946
consensus_14376#2 CGTTATAAACTATAATTCTCACATCATATCACCGAGCAAAAAAAAAAAAAAAAA------ 695
consensus_14376#1 CGTCGGCGCCACGGATCGCATCGACCAACTTGTCTGTGCCCTCCATGACGTCAGCCCTCA 762
consensus_14376#3 ------------------------------------------------------------
consensus_14376#0 CATCCATCCGCCGTCCGTTCCTGCACAGCCCGATTCCGGTGGTGGCGCCCATTTCGATCA 1006
consensus_14376#2 ------------------------------------------------------------
consensus_14376#1 CGAGCTGGAGGTTTGGGTCCTGGGGCAGGCTTCTGCGGGCGCGGCCCACGTCTGTCGTGC 822
consensus_14376#3 ------------------------------------------------------------
consensus_14376#0 GCCGGCGTTCATCCTGCCGCCGCCGTTTTATCTCACCGTCGGTGACCTCGATTATCCTGC 1066
consensus_14376#2 ------------------------------------------------------------
consensus_14376#1 CGGCGACCACGCCGAAGCCCCTCTCCAGAAGCTTCTCCACGACCCGCTTGCCGGTGCGGC 882
consensus_14376#3 ------------------------------------------------------------
consensus_14376#0 CATCCTCCGCCCCTGGTATTCCCGCCATCGCTGATCCCTGTCTAGCCACCACGGCCGTGC 1126
consensus_14376#2 ------------------------------------------------------------
consensus_14376#1 CCGTCGAGCCGGCCACGAAGACGGTGGTCGTCTTCTTGGCGTCCGACGAACTAGCGGGCG 942
consensus_14376#3 ------------------------------------------------------------
consensus_14376#0 CAACTGACTCCTTGCTGGCGACCACGCACATCTGCGCCGATCTCCTCCCTATCGACCACG 1186
consensus_14376#2 ------------------------------------------------------------
consensus_14376#1 CGGAGTCTATGGTGGAGACCGCCGTGGAGGTGAGGCTAAGCTTTCTGGTGGCGGGGCGGG 1002
consensus_14376#3 ------------------------------------------------------------
consensus_14376#0 GCCACGCCGATTTCTTCTGCCCTGACGACCGCGTCCACATCCGCGTTGACCTCCTCCTCC 1246
consensus_14376#2 ------------------------------------------------------------
consensus_14376#1 GGCCGGGGCAGAGGCAAGCGAACGCAGCGAGAGGAAGGCGGGGGCGGGCGGCGGCGATGG 1062
consensus_14376#3 ------------------------------------------------------------
consensus_14376#0 AACTGAACAGCTAGTATTTATTTTCGATTATCATGGTACTTGTGCGTTTGCTCCAAATCG 1306
consensus_14376#2 ------------------------------------------------------------
consensus_14376#1 TGTGGAAAGCGGTGGCCATTAGATTCGTGTGGCTCCTGTTCTTTGCTGGTTAGAGATGTT 1122
consensus_14376#3 ------------------------------------------------------------
consensus_14376#0 AATTTGATTTCTTCGTTGTTGATAAGAAGAGGAACCTGCTACTGCTACTGCTGCTAGATT 1366
consensus_14376#2 ------------------------------------------------------------
consensus_14376#1 TCTACTATTT------------------------------------- 1132
consensus_14376#3 -----------------------------------------------
consensus_14376#0 GCATATAGCGTTGTATACAAGTTCCAATTCGATTTATTGGATGTCAA 1413
consensus_14376#2 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||