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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1438#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1492 fasta sequence
[TCGGGGGATGTGTGGTGGTGATTAACCCCGGAACCCCCCCCCAATTCCCAGATTTAATTTCACTTGCAATCTGTGATTCTCCTGGTGAGGTGCAAGTGCAACGACAGGGTGTTCAAGTTTGTTCTTGGGCGTTCTTGGTCCTTTGGGGTTCCAAAGGCGACTTCTTTCGAGAGGAGGGAAAGAAGGGAAATGAGGGATGTTCTCGTGGTTGTTGAGGATTGCGTCCGCGTGCTTGGGCCCGGCCCGGAGGTACGCGCGTACGAGGAAGGATGAAGATGGCGGCGATAATGGCGGCGGCGTCGCCGACGGCCTGCTGTGGTCGCGGGACCTGGGGCGTCACGCGGCGGGTGAGTTCTCCTTTGCCGTCGTGCAGGCCAACGAGGCGTTGGAAGACCATAGCCAGGTCGAGACGGGCTCCGCCGCCACCTTCGTCGGCGTCTACGACGGCCACGGCGGTGCCGATGCTGCTCGCTTCATATCTGATCACCTCTTCGCACACCTGATACGACTTGCCCGAGAAAGTGAAACAGTATCGGAGGAAGTTGTTCGAGGGGCATTTTCTGCTACCGAAGAAGGTTTCTTGACACTTGTTCGGAGAACGCAGTTTTTAAAGCCTATGATAGCTGCAGTTGGATCTTGTTGTCTTGTTGGTATCATATGGAGAGGGGTACTATATGTGGCTAATTTAGGTGATTCTAGGGCAGTTGTTGGCTATTTGGGTAGAACAAACAAGATTACTGCTGAGCAAATTACAAGGGATCATAATGCTTGTAAGGAGGAAGTGAGGCAGGAACTTATTTCTCGTCATCCCGATGATTCACAAATTGTTGTTCTGAAGCATGGCGTTTGGCGCATAAAAGGCATAATCCAGGTTTCAAGGACTATAGGTGATGCATATTTAAAGAGGCGTGAATTTGCTCTTGATCCATCCATAACTCGCTTCCGCCTTTCTGAGCCTCTTCGCCGACCTGTTCTAACAGCAGAGCCATCTATCTGCACAAGAGTTCTTTCTCTGCAAGATCAATTTGTTATTTTTGCATCCGATGGTCTTTGGGAGCACTTAACAAACCAACAAGCTGTTGACATCGTCTACAAAAATCCACGAGCAGGAATTGCAAAGAGGCTAGTAAACACAGCTTTGAAAGAAGCTGCACGGAAGCGAGAAATGAGGTTTGTTGATCTTAAGAAAGTCGAAAAAGGGGTGCGGCGCTTCTTCCATGACGACATTACAGTCGTCGTTGTTTACATCGACCATGAGTTACTTCAGGAGAAAAATGTTTCTGTTCCTGAACTTTCAGTCCGTGGGTTTGTCGACTCAGTAGGTCCCTCGAGAATTTCAGGATTCGATGCTATTCATGATATGGTGACCTAGCAGCTCAGGTTTTGTGCCCTGCATTGCAGTAGCATCAGAGTTTTACGCTAGAGCAAGCATTGCTTTCAACTTGGTTTTTGTTTTGTACATTTACCTATCTCAGGTACTAAAAAGTTGGTT]
[+] EMBL AK111835 [TCGGGGGATGTGTGGTGGTGATTAACCCCGGAACCCCCCCCCAATTCCCAGATTTAATTTCACTTGCAATCTGTGATTCTCCTGGTGAGGTGCAAGTGCAACGACAGGGTGTTCAAGTTTGTTCTTGGGCGTTCTTGGTCCTTTGGGGTTCCAAAGGCGACTTCTTTCGAGAGGAGGGAAAGAAGGGAAATGAGGGATGTTCTCGTGGTTGTTGAGGATTGCGTCCGCGTGCTTGGGCCCGGCCCGGAGGTACGCGCGTACGAGGAAGGATGAAGATGGCGGCGATAATGGCGGCGGCGTCGCCGACGGCCTGCTGTGGTCGCGGGACCTGGGGCGTCACGCGGCGGGTGAGTTCTCCTTTGCCGTCGTGCAGGCCAACGAGGCGTTGGAAGACCATAGCCAGGTCGAGACGGGCTCCGCCGCCACCTTCGTCGGCGTCTACGACGGCCACGGCGGTGCCGATGCTGCTCGCTTCATATCTGATCACCTCTTCGCACACCTGATACGACTTGCCCGAGAAAGTGAAACAGTATCGGAGGAAGTTGTTCGAGGGGCATTTTCTGCTACCGAAGAAGGTTTCTTGACACTTGTTCGGAGAACGCAGTTTTTAAAGCCTATGATAGCTGCAGTTGGATCTTGTTGTCTTGTTGGTATCATATGGAGAGGGGTACTATATGTGGCTAATTTAGGTGATTCTAGGGCAGTTGTTGGCTATTTGGGTAGAACAAACAAGATTACTGCTGAGCAAATTACAAGGGATCATAATGCTTGTAAGGAGGAAGTGAGGCAGGAACTTATTTCTCGTCATCCCGATGATTCACAAATTGTTGTTCTGAAGCATGGCGTTTGGCGCATAAAAGGCATAATCCAGGTTTCAAGGACTATAGGTGATGCATATTTAAAGAGGCGTGAATTTGCTCTTGATCCATCCATAACTCGCTTCCGCCTTTCTGAGCCTCTTCGCCGACCTGTTCTAACAGCAGAGCCATCTATCTGCACAAGAGTTCTTTCTCTGCAAGATCAATTTGTTATTTTTGCATCCGATGGTCTTTGGGAGCACTTAACAAACCAACAAGCTGTTGACATCGTCTACAAAAATCCACGAGCAGGAATTGCAAAGAGGCTAGTAAACACAGCTTTGAAAGAAGCTGCACGGAAGCGAGAAATGAGGTTTGTTGATCTTAAGAAAGTCGAAAAAGGGGTGCGGCGCTTCTTCCATGACGACATTACAGTCGTCGTTGTTTACATCGACCATGAGTTACTTCAGGAGAAAAATGTTTCTGTTCCTGAACTTTCAGTCCGTGGGTTTGTCGACTCAGTAGGTCCCTCGAGAATTTCAGGATTCGATGCTATTCATGATATGGTGACCTAGCAGCTCAGGTTTTGTGCCCTGCATTGCAGTAGCATCAGAGTTTTACGCTAGAGCAAGCATTGCTTTCAACTTGGTTTTTGTTTTGTACATTTACCTATCTCAGGTACTAAAAAGTTGGTT]
consensusID : consensus_1438#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence
[TCGTCTACAAAAATCCACGAGCAGGAATTGCAAAGAGGCTAGTAAACACAGCTTTGAAAGAAGCTGCACGGAAGCGAGAAATGAGGTTTGTTGATCTTAAGAAAGTCGAAAAAGGGGTGCGGCGCTTCTTCCATGACACATTACAGTCGTCGTTGTTTACATCGACCATGAGTTACTTCAGGAGAAAAATGTTTCTGTTCCTGAACTTTCAGTCCGTGGGTTTGTCGACTCAGTAGGTCCCTCGAGAATTTCAGGATTCGATGCTATTTCATGATATGGTGACCTAGCAGCTCAGGTACTAAAAAGTTGGTTTCATGCTTGCAATATGCTCGGAATAATCACAACATGCTGTTTTTCTTCTACGTACTACATCACAACAGATGGATACTGATGTGAAAATTCCCAATTTTTGGTAATCTGAGCAAAACAAAAAATATATTTTTTTATGTAAACACTGAGGTATTGGATTNTTATTCGTAAGCAGGACAACGTAATTCCGCAGCGTCCCATTAAAACAATTGGACG]
[+] EMBL CF306379 [TCGTCTACAAAAATCCACGAGCAGGAATTGCAAAGAGGCTAGTAAACACAGCTTTGAAAGAAGCTGCACGGAAGCGAGAAATGAGGTTTGTTGATCTTAAGAAAGTCGAAAAAGGGGTGCGGCGCTTCTTCCATGACACATTACAGTCGTCGTTGTTTACATCGACCATGAGTTACTTCAGGAGAAAAATGTTTCTGTTCCTGAACTTTCAGTCCGTGGGTTTGTCGACTCAGTAGGTCCCTCGAGAATTTCAGGATTCGATGCTATTTCATGATATGGTGACCTAGCAGCTCAGGTACTAAAAAGTTGGTTTCATGCTTGCAATATGCTCGGAATAATCACAACATGCTGTTTTTCTTCTACGTACTACATCACAACAGATGGATACTGATGTGAAAATTCCCAATTTTTGGTAATCTGAGCAAAACAAAAAATATATTTTTTTATGTAAACACTGAGGTATTGGATTNTTATTCGTAAGCAGGACAACGTAATTCCGCAGCGTCCCATTAAAACAATTGGACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1438#0 TCGGGGGATGTGTGGTGGTGATTAACCCCGGAACCCCCCCCCAATTCCCAGATTTAATTT 60
consensus_1438#1 ------------------------------------------------------------
consensus_1438#0 CACTTGCAATCTGTGATTCTCCTGGTGAGGTGCAAGTGCAACGACAGGGTGTTCAAGTTT 120
consensus_1438#1 ------------------------------------------------------------
consensus_1438#0 GTTCTTGGGCGTTCTTGGTCCTTTGGGGTTCCAAAGGCGACTTCTTTCGAGAGGAGGGAA 180
consensus_1438#1 ------------------------------------------------------------
consensus_1438#0 AGAAGGGAAATGAGGGATGTTCTCGTGGTTGTTGAGGATTGCGTCCGCGTGCTTGGGCCC 240
consensus_1438#1 ------------------------------------------------------------
consensus_1438#0 GGCCCGGAGGTACGCGCGTACGAGGAAGGATGAAGATGGCGGCGATAATGGCGGCGGCGT 300
consensus_1438#1 ------------------------------------------------------------
consensus_1438#0 CGCCGACGGCCTGCTGTGGTCGCGGGACCTGGGGCGTCACGCGGCGGGTGAGTTCTCCTT 360
consensus_1438#1 ------------------------------------------------------------
consensus_1438#0 TGCCGTCGTGCAGGCCAACGAGGCGTTGGAAGACCATAGCCAGGTCGAGACGGGCTCCGC 420
consensus_1438#1 ------------------------------------------------------------
consensus_1438#0 CGCCACCTTCGTCGGCGTCTACGACGGCCACGGCGGTGCCGATGCTGCTCGCTTCATATC 480
consensus_1438#1 ------------------------------------------------------------
consensus_1438#0 TGATCACCTCTTCGCACACCTGATACGACTTGCCCGAGAAAGTGAAACAGTATCGGAGGA 540
consensus_1438#1 ------------------------------------------------------------
consensus_1438#0 AGTTGTTCGAGGGGCATTTTCTGCTACCGAAGAAGGTTTCTTGACACTTGTTCGGAGAAC 600
consensus_1438#1 ------------------------------------------------------------
consensus_1438#0 GCAGTTTTTAAAGCCTATGATAGCTGCAGTTGGATCTTGTTGTCTTGTTGGTATCATATG 660
consensus_1438#1 ------------------------------------------------------------
consensus_1438#0 GAGAGGGGTACTATATGTGGCTAATTTAGGTGATTCTAGGGCAGTTGTTGGCTATTTGGG 720
consensus_1438#1 ------------------------------------------------------------
consensus_1438#0 TAGAACAAACAAGATTACTGCTGAGCAAATTACAAGGGATCATAATGCTTGTAAGGAGGA 780
consensus_1438#1 ------------------------------------------------------------
consensus_1438#0 AGTGAGGCAGGAACTTATTTCTCGTCATCCCGATGATTCACAAATTGTTGTTCTGAAGCA 840
consensus_1438#1 ------------------------------------------------------------
consensus_1438#0 TGGCGTTTGGCGCATAAAAGGCATAATCCAGGTTTCAAGGACTATAGGTGATGCATATTT 900
consensus_1438#1 ------------------------------------------------------------
consensus_1438#0 AAAGAGGCGTGAATTTGCTCTTGATCCATCCATAACTCGCTTCCGCCTTTCTGAGCCTCT 960
consensus_1438#1 ------------------------------------------------------------
consensus_1438#0 TCGCCGACCTGTTCTAACAGCAGAGCCATCTATCTGCACAAGAGTTCTTTCTCTGCAAGA 1020
consensus_1438#1 ------------------------------------------------------------
consensus_1438#0 TCAATTTGTTATTTTTGCATCCGATGGTCTTTGGGAGCACTTAACAAACCAACAAGCTGT 1080
consensus_1438#1 ------------------------------------------------------------
consensus_1438#0 TGACATCGTCTACAAAAATCCACGAGCAGGAATTGCAAAGAGGCTAGTAAACACAGCTTT 1140
consensus_1438#1 -----TCGTCTACAAAAATCCACGAGCAGGAATTGCAAAGAGGCTAGTAAACACAGCTTT 55
*******************************************************
consensus_1438#0 GAAAGAAGCTGCACGGAAGCGAGAAATGAGGTTTGTTGATCTTAAGAAAGTCGAAAAAGG 1200
consensus_1438#1 GAAAGAAGCTGCACGGAAGCGAGAAATGAGGTTTGTTGATCTTAAGAAAGTCGAAAAAGG 115
************************************************************
consensus_1438#0 GGTGCGGCGCTTCTTCCATGACGACATTACAGTCGTCGTTGTTTACATCGACCATGAGTT 1260
consensus_1438#1 GGTGCGGCGCTTCTTCCATGAC-ACATTACAGTCGTCGTTGTTTACATCGACCATGAGTT 174
********************** *************************************
consensus_1438#0 ACTTCAGGAGAAAAATGTTTCTGTTCCTGAACTTTCAGTCCGTGGGTTTGTCGACTCAGT 1320
consensus_1438#1 ACTTCAGGAGAAAAATGTTTCTGTTCCTGAACTTTCAGTCCGTGGGTTTGTCGACTCAGT 234
************************************************************
consensus_1438#0 AGGTCCCTCGAGAATTTCAGGATTCGATGCTATT-CATGATATGGTGACCTAGCAGCTCA 1379
consensus_1438#1 AGGTCCCTCGAGAATTTCAGGATTCGATGCTATTTCATGATATGGTGACCTAGCAGCTCA 294
********************************** *************************
consensus_1438#0 GGT---------TTTGTGCCCTGCATTGCAGTAGCATCAGAGTTTTACGCTAGAGCAAGC 1430
consensus_1438#1 GGTACTAAAAAGTTGGTTTCATGC-TTGCAATATGCTCGGAATAAT-CACAACATGCTGT 352
*** ** ** * *** ***** ** ** ** * * * * * * *
consensus_1438#0 ATTGCTTTCAACTTGGTTTTTGTTTTGTACATTTACCTATCTCAGG-TACTAAAAAGTTG 1489
consensus_1438#1 TTTTCTTCTACGTACTACATCACAACAGATGGATACTGATGTGAAAATTCCCAATTTTTG 412
** *** * * * * *** ** * * * * ** ***
consensus_1438#0 GTT--------------------------------------------------------- 1492
consensus_1438#1 GTAATCTGAGCAAAACAAAAAATATATTTTTTTATGTAAACACTGAGGTATTGGATTNTT 472
**
consensus_1438#0 -----------------------------------------------------
consensus_1438#1 ATTCGTAAGCAGGACAACGTAATTCCGCAGCGTCCCATTAAAACAATTGGACG 525
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||