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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14385#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1158 fasta sequence
[TCAAGGCNCTCATGCCCGTCGCCGTGTACTCCATCGGGGTGCTCTTCAAGAAGGAGACCTTCAGGT-GT-CCTCCATGCTCAACATGCTCTCCATCTCGTTCGGCGTCG-CATCGCGGCATA---CNAGG-NC-CTTCGATGTTCGGGGTGTCGCGCTGCAGCTCGCCGCGGTGGC-TTCGAGGCCA---GGTCCGTGCTCATCCAGATCCTGCTCACCTCCAAGGGCATCTCGCTCAACCCAATCACCTCTCTGTACTACGTCGCGCCGTGCTGCCTC-GCTTCCTGCTCGTGCCGTGGGTGTTCGTCGAGCTGCCCAGGCTGCGCGCCGTCGGCACGTTCCGCCCGGACTTCTTCGTGTTCGGGACCAACTCGCTCTGCGCCTTCGCGCTGAATCTGGCGGTGTTCTTGCTCGTCGGCAAGACCTCCGCGCTCACCATGAACGTCGCCGGGGTGGTCAAGGACTGGCTGCTGATCGCCTTCTCGTGGTCCGTGATCCGGGACACGGTCACGCCGATCAACCTGTTCGGCTACGGGATCGCCTTCTTGGGGGTGGCATACTACAACCACGTCAAGCTGCAGGCGCTCAAGGCGAAGGAGGCGCAGAAGAAGATCAGCCAGGCTGATGAGGAGGCTGGCTCGCTGTTGCAGGAGCGCGATGGGCACAGTGATCGCAAGAGCGATAACCAGGCATAGAGCCACCACCAGATCTGAT-CCTGGCACACACAAATTGGGTAT-CTGGTGCAAAGTGCAAAAGACTGTAGTTTGGTTGGTCTACGGTTGCTTTCAAGGAGGTGGACACCAGTTTGTTCTTTCACTTATTTAACTTTAGTTGGATCTGGAGGGCAAATCAAGGGAATTTATTGGTTTAGGAAAATACTTGCACTTGCACCTACTTTCTGGAGGACTAGAGTAAACTTTCAT-GTT-ACCCTGTTATTTATT-CAGCT-ATT---T-T-TGTTCCA-GAGAAAGACA-GCCT-CGTTGCCTCTCTCGCTCATTGCCTA-AAATTTATTT-GTTCTACT-AGTAGCCT-A-GGTA-CTAAAAAT-GT-ACTT-CT-ACATATT-GGTATTTT-GGT-GGTTATCTTCTATATATAATGAGCTTACTGTAATATTATAATCTACTGCTGTGTATTTCTACCTTTTCAATTNGAANG-CTTTATCAAC-TGAGGCATCAAAAAAAAAAA]
[+] EMBL D42552 [TCAAGGCNCTCATGCCCGTCGCCGTGTACTCCATCGGGGTGCTCTTCAAGAAGGAGACCTTCAGGT GTNCCTCCATGCTCAACATGCTCTCCATCTCGTTCGGCGTCG CATCGCGGCATA CNAGG NC CTTCGATGTTCGGGGTGTCGCGCTGCAGCTCGCCGCGGTGGC TTCGAGGCCA GGTCCGTGCTCATCCAGATCCTGCTCACCTCCAAGGGCATCTCGCTCAACCCAATCACCTCTCTGTACTACGTCGCGCCGTGCTGCCTC GCTTCCTGCTCGTGCCGTGGGTGTTCGTCGA ]
[+] EMBL AK071846 [ TACTCCATCGGGGTGCTCTTCAAGAAGGAGACCTTCAGGTCGT CCTCCATGCTCAACATGCTCTCCATCTCGTTCGGCGTCGCCATCGCCGCATACGGCGAGGCGCGCTTCGATGTTCGGGGTGTCGCGCTGCAGCTCGCCGCGGTGGCGTTCGAGGCCACGCGGCTCGTGCTCATCCAGATCCTGCTCACCTCCAAGGGCATCTCGCTCAACCCAATCACCTCTCTGTACTACGTCGCGCCGTGCTGCCTCGGCTTCCTGCTCGTGCCGTGGGTGTTCGTCGAGCTGCCCAGGCTGCGCGCCGTCGGCACGTTCCGCCCGGACTTCTTCGTGTTCGGGACCAACTCGCTCTGCGCCTTCGCGCTGAATCTGGCGGTGTTCTTGCTCGTCGGCAAGACCTCCGCGCTCACCATGAACGTCGCCGGGGTGGTCAAGGACTGGCTGCTGATCGCCTTCTCGTGGTCCGTGATCCGGGACACGGTCACGCCGATCAACCTGTTCGGCTACGGGATCGCCTTCTTGGGGGTGGCATACTACAACCACGTCAAGCTGCAGGCGCTCAAGGCGAAGGAGGCGCAGAAGAAGATCAGCCAGGCTGATGAGGAGGCTGGCTCGCTGTTGCAGGAGCGCGATGGGCACAGTGATCGCAAGAGCGATAACCAGGCATAGAGCCACCACCAGATCTGAT CCTGGCACACACAAATTGGGTAT CTGGTGCAAAGTGCAAAAGACTGTAGTTTGGTTGGTCTACGGTTGCTTTCAAGGAGGTGGACACCAGTTTGTTCTTTCACTTATTTAACTTTAGTTGGATCTGGAGGGCAAATCAAGGGAATTTATTGGTTTAGGAAAATACTTGCACTTGCACCTACTTTCTGGAGGACTAGAGTAAACTTTCAT GTT ACCCTGTTATTTATT CAGCT ATT T T TGTTCCA GAGAAAGACA GCCT CGTTGCCTCTCTCGCTCATTGCCTA AAATTTATTT GTTCTACT AGTAGCCT A GGTA CTAAAAAT GT ACTT CT ACATATT GGTATTTT GGT GGTTATCTTCTATATATAATGAGCTTACTGTAAT ]
[+] EMBL AU056889 [ TCTTCGTGTTCGGGACCAACTCGCTCTGCGCCTTCGCGCTGAATCTGGCGGTGTTCTTGCTCGTCGGCAAGACCTCCGCGCTCACCATGAACGTCGCCGGGGTGGTCAAGGACTGGCTGCTGATCGCCTTCTCGTGGTCCGTGATCCGGGACACGGTCACGCCGATCAACCTGTTCGGCTACGGGATCGCCTTCTTGGGGGTGGCATACTACAACCACGTCAAGCTGCAGGCGCTCAAGGCGAAGGAGGCGCAGAAGAAGATCAGCCAGGCTGATGAGGAGGCTGGCTCGCTGTTGCAGGAGCGCGATGGGCACAGTGATCGCAAGAGCGATAACCAGGCATAGAGCCACCACCAGATCTGAT CCTGGCACACACAAATTGGGTAT CTGGTGCAAAGTGCAAAAGACTGTAGTTTGGTTGGTCTACGGTTGCTTTCAAGGAGGTGGACACCAGTTTGTTCTTTCACTTATTTAACTTTAGTTGGATCTGGAGGGCAAATCAAGGGAATTTATTGGTTTAGGAAAATACTTGCACTTGCACCTACTTTCTGGAGGACTAGAGTAAACTTTCAT GTT ACCCTGTTATTTATT CAGCT ATT T T TGTTCCA GAGAAAGACA GCCT CGTTGCCTCTCTCGCTCATTGCCTA AAATTTANTT GTTCTACT AGTAGCCT AGGGTA CTAAAAAT GT ACTT C ]
[+] EMBL CA758907 [ AAGACCTCCGCGCTCACCATGAACGTCGCCGGGGTGGTCAAGGACTGGCTGCTGATCGCCTTCTCGTGGTCCGTGATCCGGGACACGGTCACGCCGATCAACCTGTTCGGCTACGGGATCGCTTTCTTGGGGGTGGCATACTACAACCACGTCAAGCTGCAGGCGCTCAAGGCGAAGGAGGCGCAGAAGAAGATCAGCCAGGCTGATGAGGAGGCTGGCTCGCTGTTGCAGGAGCGCGATGGGCACAGTGATCGCAAGAGCGATAACCAGGCATAGAGCCACCACCAGATCTGAT CCTGGCACACACAAATTGGGTAT CTGGTGCAAAGTGCAAAAGACTGTAGTTTGGTTGGTCTACGGTTGCTTTCAAGGAGGTGGACACCAGTTTGTTCTTTCACTTATTTAACTTTAGTTGGATCTGGAGGGCAAATCAAGGGAATTTATTGGTTTAGGAAAATACTTGCACTTGCACCTACTTTCTGGAGGACTAGAGTAAACTTTCAT GTT ACCCTGTTATTTATT CAGCT ATT T T TGTTCCA GAGAAAGACA GCCT CGTTGCCTCTCTCGCTCATCGCCTA AAATTTATTT GTTCTACT AGTAGCCT A GGTA CTAAAAAT GT ACTT CT A ]
[+] EMBL AU056890 [ GCCTTCTTGGGGGTGGCATACTACANCCACGTCAAGCTGCNGGCGCTCAAGGCGAAGGAGGCNCAGAAGAAGATCAGCCAGGCTGATGAGGAGGCTGGCTCGCTGTTGCAGGAGCGCGATGGGCACAGTGATCGCAAGAGCGATAACCAGGCATAGAGCCACCACCAGATCTGATCCCTGGCACACACAAATTGGGTATCCTGGTGCAAAGTGCAAAAGACTGTAGTTTGGTTGGTCTACGGTTGCTTTCAAGGAGGTGGACACCAGTTTGTTCTTTCACTTATTTAACTTTAGTTGGATCTGGAGGGCAAATCAAGGGAATTTATTGGTTTAGGAAAATACTTGCACTTGCACCTACTTTCTGGAGGACTAGAGTAAACTTTCAT GTT ACCCTGTTATTTATT CAGCT ATT T T TGTTCCA GAGAAAGACA GCCT CGTTGCCTCTCTCGCTCATTGCCTA AAATTTATTT GTTCTACT AGTAGCCT A GGTA CTAAAAAT GT ACTT CT ACATATT GGTATTTT GGT GGTTATCTTCTATAAAAAAaa ]
[+] EMBL BM419281 [ nGTGATCGCAAGAGCGATAACCAGGCATAGAGCCACCACCAGATCTGAT CCTGGCACACACAAATTGGGTAT CTGGTGCAAAGTGCAAAAGACTGTAGTTTGGTTGGTCTACGGTTGCTTTCAAGGAGGTGGACACCAGTTTGTTCTTTCACTTATTTAACTTTAGTTGGATCTGGAGGGCAAATCAAGGGAATTTATTGGTTTAGGAAAATACTTGCACTTGCACCTACTTTCTGGAGGACTAGAGTAAACTTTCAT GTTGACCCTGTTATTTATTGCAGCTGATTGTGT TGTGTCCCA GAGAAAGACA GCCTGCGTTGCCTCTCTCGCTCCTCGCCTA AAATTTATTTGGTTCTACTGAGTAGCCTGA GGTA CTAAAAATGGTGACTTGCTGACATATTGGGTATTTTGGGTGGGTTATCTTCTATATA AANGAGCTTACTGTAATATTATAATCTACTGCTGTGTATTTCTACCTTTTCAATTNGAANGNCTTTATCAAC TGAGGCATCAAAAAA ]
[+] EMBL BM420496 [ ccgCTGGAGGGCAAATCAAGGGAATTTATTGGTTTAGGAAAATACTTGCACTTGCACCTACTTTCTGGAGGACTAGAGTAAACTTTCATGGTT ACCCTGTTATTTATT CAGCT ATT TGT TGTTCCACGAGAAAGACACCCCT CGTTGCCTCTCTCGCTCATCGCCTANCAATTTATTT GTTCTACT AGTAGCCT A GGTACCTAAAAAT GT ACTT CT ACATATT GGTATTTT GGT GGTTATCTTCTATATA AATGAGCTTACTGTAATATTATAATCTACTGCTGTGTATTTCTACCTTTTCAATTTGAATG GTTTATCCACTTGATGCATCCAAAAAAAAAA]
[+] EMBL CA764385 [ aaggggGTTGCCTCTCTCGCTCATTGCCTA AAATTTATTT GTTCTACT AGTAGCCT A GGTA CTAAAAAT GT ACTT CT ACATATT GGTATTTT GGT GGTTATCTTCTATATATAATGAGCTTACTGTAATATTATAAaaaaaaaaa ]
consensusID : consensus_14385#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1074 fasta sequence
[TACTCCATCGGGGTGCTCTTCAAGAAGGAGACCTTCAGGTCGTCCTCCATGCTCAACATGCTCTCCATCTCGTTCGGCGTCGCCATCGCCGCATACGGCGAGGCGCGCTTCGATGTTCGGGGTGTCGCGCTGCAGCTCGCCGCGGTGGCGTTCGAGGCCACGCGGCTCGTGCTCATCCAGATCCTGCTCACCTCCAAGGGCATCTCGCTCAACCCAATCACCTCTCTGTACTACGTCGCGCCGTGCTGCCTCGGCTTCCTGCTCGTGCCGTGGGTGTTCGTCGAGCTGCCCAGGCTGCGCGCCGTCGGCACGTTCCGCCCGGACTTCTTCGTGTTCGGGACCAACTCGCTCTGCGCCTTCG-CGCTGAATCTGGCGGTGTTC-TTGCTCGTCGGCAAGACCTCCGCGCTCACCATGAACGTCGCCGGGGTGGTCAAGGACTGGCTGCTG-ATCGCCTTCTCGTGGTCCGTGAT-CCGGGACACGGTCACGCCGATCAACCT-GTTCGGCTACGGGATCGCCTTCTTGGGGGTGGCATACTA-CAACCACGTCAA-GCTGCAGGCGCTCAAGGCG-AAGGAGGCGCAGAAGAAGATCAGCCAGGCTGATGAGGAGGCTGGCTCGCTGTTGCAGGAGCGCGATGGGCACAGTGATCGCAAGAGCGATAACCAGGCATAGAGCCACCACCAGATCTGATCCTGGCACACACAAATTGGTTGGTTCTAAATCCGGCTGTGTTATCTCTTTTGGTTGCACTCTCAATGTGTTTGTTCTTTACCTTGATCCGTTGTA-GGAGAGCAATAAATTATGGAGTAAAATGTGATCTTTTACATTTAATAGATGGAAAAATGTGCGATCTTTTATAGTTTACACACCTGTATTTTTTTATTTATTACTGAGATGCTACATATGTTTACTGGAGTACTAGAGAAGTGTAAACATATACTATCTGAAATGCTTTGTTGCAACAGCCTTTGTAGTCTATATAATCACTATATCCACTTAGTTGCAACTAAGAAAGCTTGGGCCCTATGTAATGTTGCGTGAGGCATTGCTAAAGTACTCTTGAATGTTGTTCAAAAA]
[+] EMBL AK059987 [TACTCCATCGGGGTGCTCTTCAAGAAGGAGACCTTCAGGTCGTCCTCCATGCTCAACATGCTCTCCATCTCGTTCGGCGTCGCCATCGCCGCATACGGCGAGGCGCGCTTCGATGTTCGGGGTGTCGCGCTGCAGCTCGCCGCGGTGGCGTTCGAGGCCACGCGGCTCGTGCTCATCCAGATCCTGCTCACCTCCAAGGGCATCTCGCTCAACCCAATCACCTCTCTGTACTACGTCGCGCCGTGCTGCCTCGGCTTCCTGCTCGTGCCGTGGGTGTTCGTCGAGCTGCCCAGGCTGCGCGCCGTCGGCACGTTCCGCCCGGACTTCTTCGTGTTCGGGACCAACTCGCTCTGCGCCTTCG CGCTGAATCTGGCGGTGTTC TTGCTCGTCGGCAAGACCTCCGCGCTCACCATGAACGTCGCCGGGGTGGTCAAGGACTGGCTGCTG ATCGCCTTCTCGTGGTCCGTGAT CCGGGACACGGTCACGCCGATCAACCT GTTCGGCTACGGGATCGCCTTCTTGGGGGTGGCATACTA CAACCACGTCAA GCTGCAGGCGCTCAAGGCG AAGGAGGCGCAGAAGAAGATCAGCCAGGCTGATGAGGAGGCTGGCTCGCTGTTGCAGGAGCGCGATGGGCACAGTGATCGCAAGAGCGATAACCAGGCATAGAGCCACCACCAGATCTGATCCTGGCACACACAAATTGGTTGGTTCTAAATCCGGCTGTGTTATCTCTTTTGGTTGCACTCTCAATGTGTTTGTTCTTTACCTTGATCCGTTGTA GGAGAGCAATAAATTATGGAGTAAAATGTGATC ]
[+] EMBL OSS1203A [ CAATCACCTCTCTGTACTACGTCGCGCCGTGCTGCCTCGGCTTCCTGCTCGTGCCGTGGGTGTTCGTCGAGCTGCCCAGGCTGCGCGCCGTCGGCACGTTCCGCCCGGACTTCTTCGTGTTCGGGACCAACTCGCTCTGCGCCTTCG CGCTGAATCTGGCGGTGTTC TTGCTCGTCGGCAAGACCTCCGCGCTCACCATGAACGTCGCCGGGGTGGTCAAGGACTGGCTGCTG ATCGCCTTCTCGTGGTCCGTGAT CCGGGA ]
[+] EMBL BQ907056 [ TCGCCGCTGAATCT GCGGTGTTCTTTGCTCGTCGGCAAGACCTCCGCGCTCACCATGGACGTCGCCGGGGTGGTCAAGGACTGGCTGCTGTATCGCCTTCTCGTGGTCCGTGAT CCGGGACAC GTCACGCCGATCAACCT GTTCGGCTACGGGATCGCTTTCTT GGGGTGGCATACTA CAACCACGTCAAGGCTGCAGGCGCTCAAGGCG AAGGAGGCGCAGAAGAAGATCAGCCAGGCTGATGAGGAGGCTGGCTCGCTGTTGCAGGAGCGCGATGGGCACAGTGATCGCAAGAGCGATAACCAGGCATAGAGCCACCACCAGATCTGATCCTGGCACACACAAATTGGTTGGTTCTAAATCCGGCTGTGTTATCTCTTTTGGTTGCACTCTCAATGTGTTTGTTCTTTACCTTGATCCGTTGTACGGAGAGCAATAAATTATGGAGTAAAATGTGATCTTTTACATTTAATAGATGGAAAAATGTGCGATCTTTTATAGTTTACACACCTGTATTTTTTTATTTATTACTGAGATGCTACATATGTTTACTGGAGTACTAGAGAAGTGTAAACATATACTATCTGAAATGCTTTGTTGCAAaaaaaaaa ]
[+] EMBL AU071043 [ CGCCGGGGTGGTCAAGGACTGGCTGCTG ATCGCCTTCTCGTGGTCCGTGATCCCGGGACACGGTCACGCCGATCAACCTGGTTCGGCTACGGGATCGCCTTCTTGGGGGTGGCATACTACCAACCACGTCAA GCTGCAGGCGCTCAAGGCGAAAGGAGGCGCAGAAGNAGATCAGCCAGGCTGATGAGGAGGCTGGCTCGCTGTTGCAGGAGCGCGATGGGCACAGTGATCGCAAGAGCGATAACCAGGCATAGAGCCACCACCAGATCTGATCCTGGCACACACAAATTGGTTGGTTCTAAATCCGGCTGTGTTATCTCTTTTGGTTGCACTCTCAATGTGTTTGTTCTTTACCTTGATCCGTTGTA GGAGAGCAATAAATTATGGAGTAAAATGTGATCTTTTACATTTAATAGATGGAAAAATGTGCGATCTTTTATAGTTTACACACCTGTATTTTTTTATTTATTACTGAGATGCTACATATGTTTACTGGAGTACTAGAGAAGTGTAAACATATACTATCTGAAATGCTTTGTTGCAACAGCCTTTGTAGTCTATATAATCACTATATCCACTTAGTTGCAACTAAGAAAGCTTGGGCCCTATGTAATGTTGCGTGAGGCATTGCTAAAGTACTCTTGAATGTTGTTCAAAAA]
[+] EMBL CA998325 [ GTGAT CCGGGACACGGTCACGCCGATCAACCT GTTCGGCTACGGGATCGCCTTCTTGGGGGTGGCATACTA CAACCACGTCAA GCTGCAGGCGCTCAAGGCG AAGGAGGCGCAGAAGAAGATCAGCCAGGCTGATGAGGAGGCTGGCTCGCTGTTGCAGGAGCGCGATGGGCACAGTGATCGCAAGAGCGATAACCAGGCATAGAGCCACCACCAGATCTGATCCTGGCACACACAAATTGGTTGGTTCTAAATCCGGCTGTGTTATCTCTTTTGGTTGCACTCTCAATGTGTTTGTTCTTTACCTTGATCCGTTGTA GGAGAGCAATAAATTATGGAGTAAAATGTGATCTTTTACATTTAATAGATGGAAAAATGTGCGATCTTTTATAGTTTACACACCTGTATTTTTTTATTTATTACTGAGATGCTACATATGTTTACTGGAGTACTAGAGAAGTGTAAACATATACTATCTGAAATGCTTTGTTGCAACAGCCTTTGTAGTCTATATAATCACTATATCCACTT ]
consensusID : consensus_14385#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1011 fasta sequence
[TACTCCCTCGCCGTCGCGTTCCGCACCGACTCCTTCCGCCGCGCCTCCATGCTCAACATGCTCGGCATCTCCGCGGGCGTCGCCGTCGCGGCCTACGGCGAGGCTCGGTTCGACGCGTTCGGCGTCATGCTGCAGCTCGCCGCCGTCGCCGCCGAGGCCACGCGGCTCGTGCTCATCCAGATACTGCTCACCTCCAAGGGCATGTCGCTGAACCCCATCACCTCGCTCTACTACATCGCGCCGTGCTGCCTCGTGTTCTTGACGCTGCCATGGTACTTCGTCGAGCTGCCGCGGCTGCGCGCCGCCGCGGGCGCCGCCGCCCGGCCCGACGTGTTCGTGTTCGGGACGAACTCGCTGTGCGCGTTCGCGCTCAACCTGGCGGTGTTCCTGCTGGTGGGGAAGACGTCGGCGCTGACCATGAACGTGGCCGGCGTCGTCAAGGACTGGCTGCTCATCGCCTTCTCCTGGACAGTGATCAAGGACACCGTCACGCCGGTCAACCTCGTCGGCTATGGCATTGCCTTCCTCGGCGTCGCCTACTACAACCATGCCAAGCTGCAGGGGCTCAAGGCCAGGGAGGCAGAGAGGAGGGCCGCGTCAATGGCGACGGCGAAGGACGGCGACGCAGAAGCCGGTGCGCGGCTGCTGCCGGAGAAAGATGCCGGTGAGCAGAAGAACTGATCAAAGTCGAACACCAAGCATAGTACATTAATGAAGGTTGATAAATCAACGGCATTCCTTTGTCATCTTTAGGATGCCTGAACTGTGGTTTAATTGACCCTTGATGAACTTCAAGCTGCATATTTAAGTTTGTGACCATTCATTATCATGGAGAATACAGATCATTTTAGATATGCATTTGATTGAGGAACAATGCATGTGATTCAGCAGGAGATAGCAACACAGGAATGATTTATCCAATCCCTTTTCGTCAAAAGGGGCAAGTTATGTAGATGCATGATGTAACGGGAGAACAACTCGAAACTTCTTAATCCATTGGCTACTAAATAT]
[+] EMBL AK107562 [TACTCCCTCGCCGTCGCGTTCCGCACCGACTCCTTCCGCCGCGCCTCCATGCTCAACATGCTCGGCATCTCCGCGGGCGTCGCCGTCGCGGCCTACGGCGAGGCTCGGTTCGACGCGTTCGGCGTCATGCTGCAGCTCGCCGCCGTCGCCGCCGAGGCCACGCGGCTCGTGCTCATCCAGATACTGCTCACCTCCAAGGGCATGTCGCTGAACCCCATCACCTCGCTCTACTACATCGCGCCGTGCTGCCTCGTGTTCTTGACGCTGCCATGGTACTTCGTCGAGCTGCCGCGGCTGCGCGCCGCCGCGGGCGCCGCCGCCCGGCCCGACGTGTTCGTGTTCGGGACGAACTCGCTGTGCGCGTTCGCGCTCAACCTGGCGGTGTTCCTGCTGGTGGGGAAGACGTCGGCGCTGACCATGAACGTGGCCGGCGTCGTCAAGGACTGGCTGCTCATCGCCTTCTCCTGGACAGTGATCAAGGACACCGTCACGCCGGTCAACCTCGTCGGCTATGGCATTGCCTTCCTCGGCGTCGCCTACTACAACCATGCCAAGCTGCAGGGGCTCAAGGCCAGGGAGGCAGAGAGGAGGGCCGCGTCAATGGCGACGGCGAAGGACGGCGACGCAGAAGCCGGTGCGCGGCTGCTGCCGGAGAAAGATGCCGGTGAGCAGAAGAACTGATCAAAGTCGAACACCAAGCATAGTACATTAATGAAGGTTGATAAATCAACGGCATTCCTTTGTCATCTTTAGGATGCCTGAACTGTGGTTTAATTGACCCTTGATGAACTTCAAGCTGCATATTTAAGTTTGTGACCATTCATTATCATGGAGAATACAGATCATTTTAGATATGCATTTGATTGAGGAACAATGCATGTGATTCAGCAGGAGATAGCAACACAGGAATGATTTATCCAATCCCTTTTCGTCAAAAGGGGCAAGTTATGTAGATGCATGATGTAACGGGAGAACAACTCGAAACTTCTTAATCCATTGGCTACTAAATAT]
consensusID : consensus_14385#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence
[TCATCTATACGGGAAACGCCTGGTACAGCCACATGCAAGGTACCGTGCTCTCTGCGAATTCCCGGGTCTGACACTCTACNGCGGTCCGCCATGGTAGGCGCAAGAATCAAAGGGAATCTGTAGTTGCGTTTTTAGCGATAAAATNACGTTTGCAACTTGTGCTACACGTACATTTCTGGAGGACTAGAGTAAAACTTTCATGTTACCCTGGTTANTGGTAGTGTCAGCTAGTTGTTTGTTCCAGAGAAAGACAGACCTCGTTGCCTCTCTCGCTCTATCGCCGTAAAATTTATTTGTTCTACTAGTAGCCTAGGTACTAAAAATGTACTTCNACATATTGGTATTTTGGTGGTTATCTTCTATTATAAATGAGCTTACTGTAATATTATAATCTACTGCTGTGTAT]
[-] EMBL BM422289 [TCATCTATACGGGAAACGCCTGGTACAGCCACATGCAAGGTACCGTGCTCTCTGCGAATTCCCGGGTCTGACACTCTACNGCGGTCCGCCATGGTAGGCGCAAGAATCAAAGGGAATCTGTAGTTGCGTTTTTAGCGATAAAATNACGTTTGCAACTTGTGCTACACGTACATTTCTGGAGGACTAGAGTAAAACTTTCATGTTACCCTGGTTANTGGTAGTGTCAGCTAGTTGTTTGTTCCAGAGAAAGACAGACCTCGTTGCCTCTCTCGCTCTATCGCCGTAAAATTTATTTGTTCTACTAGTAGCCTAGGTACTAAAAATGTACTTCNACATATTGGTATTTTGGTGGTTATCTTCTATTATAAATGAGCTTACTGTAATATTATAATCTACTGCTGTGTAT]
consensusID : consensus_14385#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 183 fasta sequence
[TTACTGGAGTACTAGAGAAGTGTAAACATATACTATCTGAAATGCTTTGTTGCAACAGCCTTTNGTAGTCTATATAATCACTATATCCACTTAGTTGCAACTAAGAAAGCTTGGGCCCTATGTAATGTTGCGTGAGGCATTGCTAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU097022 [TTACTGGAGTACTAGAGAAGTGTAAACATATACTATCTGAAATGCTTTGTTGCAACAGCCTTTNGTAGTCTATATAATCACTATATCCACTTAGTTGCAACTAAGAAAGCTTGGGCCCTATGTAATGTTGCGTGAGGCATTGCTAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14385#0 TCAAGGCNCTCATGCCCGTCGCCGTGTACTCCATCGGGGTGCTCTTCAAGAAGGAGACCT 60
consensus_14385#3 ------------------------------------------------------------
consensus_14385#2 ----------------TACTCCCTCGCCGTCGCGTTCCGCACCGACTCCTTCCGCCGCGC 44
consensus_14385#1 ----------------TACTCCATCGGGGTGCTCTTCAAGAAGGAGACCTTCAGGTCGTC 44
consensus_14385#4 ------------------------------------------------------------
consensus_14385#0 TCAGGTGTCCTCCATGCTCAACATGCTCTCCATCTCGTTCGGCGTCGCATCGCGGCATAC 120
consensus_14385#3 ------------------------------------------------------------
consensus_14385#2 CTCCATGCTCAACATGCTCGGCATCTCCGCGGGCGTCGCCGTCGCGGCCTACGGCGAGGC 104
consensus_14385#1 CTCCATGCTCAACATGCTCTCCATCTCGTTCGGCGTCGCCATCGCCGCATACGGCGAGGC 104
consensus_14385#4 ------------------------------------------------------------
consensus_14385#0 NAGGNCCTTCGATGTTCGGGGTGTCGCGCTGCAGCTCGCCGCGGTGGCTTCGAGGCCA-G 179
consensus_14385#3 ------------------------------------------------------------
consensus_14385#2 TCGGTTCGACGCGTTCGGCGTCATGCTGCAGCTCGCCGCCGTCGCCGCCGAGGCCACGCG 164
consensus_14385#1 GCGCTTCGATGTTCGGGGTGTCGCGCTGCAGCTCGCCGCGGTGGCGTTCGAGGCCACGCG 164
consensus_14385#4 ------------------------------------------------------------
consensus_14385#0 GTCCGTGCTCATCCAGATCCTGCTCACCTCCAAGGGCATCTCGCTCAACCCAATCACCTC 239
consensus_14385#3 ------------------------------------------------------------
consensus_14385#2 GCTCGTGCTCATCCAGATACTGCTCACCTCCAAGGGCATGTCGCTGAACCCCATCACCTC 224
consensus_14385#1 GCTCGTGCTCATCCAGATCCTGCTCACCTCCAAGGGCATCTCGCTCAACCCAATCACCTC 224
consensus_14385#4 ------------------------------------------------------------
consensus_14385#0 TCTGTACTACGTCGCGCCGTGCTGCCTCGC-TTCCTGCTCGTGCCGTGGGTGTTCGTCGA 298
consensus_14385#3 ------------------------------------------------------------
consensus_14385#2 GCTCTACTACATCGCGCCGTGCTGCCTCGTGTTCTTGACGCTGCCATGGTACTTCGTCGA 284
consensus_14385#1 TCTGTACTACGTCGCGCCGTGCTGCCTCGGCTTCCTGCTCGTGCCGTGGGTGTTCGTCGA 284
consensus_14385#4 ------------------------------------------------------------
consensus_14385#0 GCTGCCCAGGCTGCGCGCCGTCGG------CACGTTCCGCCCGGACTTCTTCGTGTTCGG 352
consensus_14385#3 ------------------------------------------------------------
consensus_14385#2 GCTGCCGCGGCTGCGCGCCGCCGCGGGCGCCGCCGCCCGGCCCGACGTGTTCGTGTTCGG 344
consensus_14385#1 GCTGCCCAGGCTGCGCGCCGTCGG------CACGTTCCGCCCGGACTTCTTCGTGTTCGG 338
consensus_14385#4 ------------------------------------------------------------
consensus_14385#0 GACCAACTCGCTCTGCGCCTTCGCGCTGAATCTGGCGGTGTTCTTGCTCGTCGGCAAGAC 412
consensus_14385#3 ------------------------------------------------------------
consensus_14385#2 GACGAACTCGCTGTGCGCGTTCGCGCTCAACCTGGCGGTGTTCCTGCTGGTGGGGAAGAC 404
consensus_14385#1 GACCAACTCGCTCTGCGCCTTCGCGCTGAATCTGGCGGTGTTCTTGCTCGTCGGCAAGAC 398
consensus_14385#4 ------------------------------------------------------------
consensus_14385#0 CTCCGCGCTCACCATGAACGTCGCCGGGGTGGTCAAGGACTGGCTGCTGATCGCCTTCTC 472
consensus_14385#3 ------------------------------------------------------------
consensus_14385#2 GTCGGCGCTGACCATGAACGTGGCCGGCGTCGTCAAGGACTGGCTGCTCATCGCCTTCTC 464
consensus_14385#1 CTCCGCGCTCACCATGAACGTCGCCGGGGTGGTCAAGGACTGGCTGCTGATCGCCTTCTC 458
consensus_14385#4 ------------------------------------------------------------
consensus_14385#0 GTGGTCCGTGATCCGGGACACGGTCACGCCGATCAACCTGTTCGGCTACGGGATCGCCTT 532
consensus_14385#3 ------------------------------------------------------------
consensus_14385#2 CTGGACAGTGATCAAGGACACCGTCACGCCGGTCAACCTCGTCGGCTATGGCATTGCCTT 524
consensus_14385#1 GTGGTCCGTGATCCGGGACACGGTCACGCCGATCAACCTGTTCGGCTACGGGATCGCCTT 518
consensus_14385#4 ------------------------------------------------------------
consensus_14385#0 CTTGGGGGTGGCATACTACAACCACGTCAAGCTGCAGGCGCTCAAGGCGAAGGAGGCGCA 592
consensus_14385#3 ------------------------------------------------------------
consensus_14385#2 CCTCGGCGTCGCCTACTACAACCATGCCAAGCTGCAGGGGCTCAAGGCCAGGGAGGCAGA 584
consensus_14385#1 CTTGGGGGTGGCATACTACAACCACGTCAAGCTGCAGGCGCTCAAGGCGAAGGAGGCGCA 578
consensus_14385#4 ------------------------------------------------------------
consensus_14385#0 GAAGAAGATCAGCCAGGCTGATGAGGAGGCTGGCTCGCTGTTGCAGGAGCGCGATGGGCA 652
consensus_14385#3 ------------------------------------------------------------
consensus_14385#2 GAGGAGGGCCGCGTCAATGGCGACGGCGA--AGGACGGCGACGCAGAAGCCGGTGCGCGG 642
consensus_14385#1 GAAGAAGATCAGCCAGGCTGATGAGGAGGCTGGCTCGCTGTTGCAGGAGCGCGATGGGCA 638
consensus_14385#4 ------------------------------------------------------------
consensus_14385#0 CAGTGATCGCAAGAGCGATAACCAGGCATAGAGCCACCACCAGATCTGATCCTGGCACAC 712
consensus_14385#3 ------------------------------------------------------TCATCT 6
consensus_14385#2 CTGCTGCCGGAGAAA--------------------------------------GATGCCG 664
consensus_14385#1 CAGTGATCGCAAGAGCGATAACCAGGCATAGAGCCACCACCAGATCTGATCCTGGCACAC 698
consensus_14385#4 ------------------------------------------------------------
consensus_14385#0 ACAAATTGGGTATCTGGTGCA---AAGTGCAAAAGACTGTAGTTTGGTTGGTCTACGGTT 769
consensus_14385#3 ATACGGGAAACGCCTGGTACAGCCACATGCAAGGTACCGTGCTCTCTGCGAATTCCCGGG 66
consensus_14385#2 GTGAGCAGAAGAACTGAT-CA-----AAGTCGAACACCAAGCATAGTAC-ATTAATGAAG 717
consensus_14385#1 ACAAATTGGTTGGTTCTAAAT---CCGGCTGTGTTATCTCTTTTGGTTGCACTCTCAATG 755
consensus_14385#4 ------------------------------------------------------------
consensus_14385#0 GCTTTCAAGGAGGTGGACACCAGTTTGTTCTTTCACTTATTTAACTTTAGTTGGATCTGG 829
consensus_14385#3 TCTGACAC-----TCTACNGCGGTCCGCCATGGTAGGCGCAAGAATCAAAGGGAATCTGT 121
consensus_14385#2 GTTGATAAA----TCAACGGCATTCCTTTGTCATCTTTAGGATGCCTGAACTGTGGTT-T 772
consensus_14385#1 TGTTTGTTCTTTACCTTGATCCGTTGTAGGAGAGCAATAAATTATGGAGTAAAATGTGAT 815
consensus_14385#4 ------------------------------------------------------------
consensus_14385#0 AGG-GCAAATCAAGGGA--ATTTATTGGTTTAGGAAAATACTTGCACTTGCACCTAC-TT 885
consensus_14385#3 AGTTGCGTTTTTAGCGA--TAAAATNACGTTTGCAA----CTTGTGCT-ACACGTACATT 174
consensus_14385#2 AATTGACCCTTGATGAACTTCAAGCTGCATATTTAAG---TTTGTGAC--CATTCATTAT 827
consensus_14385#1 CTTTTACATTTAATAGATGGAAAAATGTGCGATCTTTTATAGTTTACACACCTGTATTTT 875
consensus_14385#4 ------------------------------------------------------------
consensus_14385#0 TCTGGAGGACTAGAGTAAA-CTTTCATGTTACCCTG-TTATTTAT----TCAGCTATTT- 938
consensus_14385#3 TCTGGAGGACTAGAGTAAAACTTTCATGTTACCCTGGTTANTGGTAGTGTCAGCTAGTTG 234
consensus_14385#2 CATGGAGAA-TACAGATCATTTTAGATATGCATTTGATTGAGGAACAATGCATGTGATTC 886
consensus_14385#1 TTTATTTATTACTGAGATGCTACATATGTTTACTGGAGTACTAGA-----GAAGTGTAAA 930
consensus_14385#4 -----------------------------TTACTGGAGTACTAGA-----GAAGTGTAAA 26
* * * *
consensus_14385#0 -TTGTTCCAGAGAAAGACAG-CCTCGTTGCCTCTCTCGCTC-ATTGCC-TAAAATTTATT 994
consensus_14385#3 TTTGTTCCAGAGAAAGACAGACCTCGTTGCCTCTCTCGCTCTATCGCCGTAAAATTTATT 294
consensus_14385#2 AGCAGGAGATAGCAACACAGGAATGATTTATCCAATCCCTT-TTCGTC--AAAAGGGGCA 943
consensus_14385#1 CATATACTATCTGAA---ATGCTTTGTTGCAACAGCCTTTG-TAGTCTATATAATCACTA 986
consensus_14385#4 CATATACTATCTGAA---ATGCTTTGTTGCAACAGCCTTTNGTAGTCTATATAATCACTA 83
* ** * * ** * * * * **
consensus_14385#0 TGTTCTACTAGTAGCCTAGGTACTAAAAATGTACTTCTACATATTGGTATTTTGGTGGTT 1054
consensus_14385#3 TGTTCTACTAGTAGCCTAGGTACTAAAAATGTACTTCNACATATTGGTATTTTGGTGGTT 354
consensus_14385#2 AGTTATGTAGATGCATGATGTAACGGGAGAACAACTCGAAAC-TTCTTAATCCATTGGCT 1002
consensus_14385#1 TATCCACTTAGTTGC--AACTAAGAAAGCTTGGGCCCTATGTAATGTTGCGTGAGGCATT 1044
consensus_14385#4 TATCCACTTAGTTGC--AACTAAGAAAGCTTGGGCCCTATGTAATGTTGCGTGAGGCATT 141
* * * ** * * * * *
consensus_14385#0 ATCTTC-TATATATAATGAGCTTACTGTAATATTATAATCTACTGCTGTGTATTTCTACC 1113
consensus_14385#3 ATCTTC-TATTATAAATGAGCTTACTGTAATATTATAATCTACTGCTGTGTAT------- 406
consensus_14385#2 ACTAAA-TAT-------------------------------------------------- 1011
consensus_14385#1 GCTAAAGTACTCTTGAATGTTGTTCAAAAA------------------------------ 1074
consensus_14385#4 GCTAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------ 183
**
consensus_14385#0 TTTTCAATTNGAANGCTTTATCAACTGAGGCATCAAAAAAAAAAA 1158
consensus_14385#3 ---------------------------------------------
consensus_14385#2 ---------------------------------------------
consensus_14385#1 ---------------------------------------------
consensus_14385#4 ---------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||