Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 14400 cluster # 14400       Sequences # 16       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14400#0 length = 776 sequences # 4  
consensus_14400#1 length = 668 sequences # 9  
consensus_14400#2 length = 457 sequences # 2  
consensus_14400#3 length = 310 sequences # 1  

consensusID : consensus_14400#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 776
fasta sequence
                              [TTCTGTTCCCAAAAAAAAAAAATCGTACAATTCCGCAGCCTAACCCTAGTCGACGCGAACCTCCAGCCGCCGGAAGATGCTGCGACCAGCGGCGGCGGCGGCGGGCAGGGCCATCCGGCGAGCCGCGTACCACTCCGACGGCGCCCCTCCTCCCCGCAAGCTCCGGGGCCCCCGATTCAGCCC-TCTCAACAGGCACAA-CCACGAGGTTGATG-CGTTGCTCGAGG-AAATCAAGAATACGCCGGTTAGCATGATTT-CCGATGACTTAATTATCAGAACTGTGCGGCAGTACGTAAACCTCT-GAATTGCAGCTTCTGTTATTATTTGTTGTGTGTCTTGTTA-A-CCATCCTAAATTGATAATTACTATTACCTGTCCTTGTCT-GCTTCTCT-AGTTCTATTTTGGCTCGTCAGCAGATTCTTGTTCAAAATGTTCTCCGATCATGGGTTATTGCTGCAGCAGTTCTCTCAGGCTATTGCTGGGGGTACA-ACAGAGTGGCCAAACGTCCTGTGGCTGGCTCTGAA-CCACCAACAGAAGATGAGGTGTAGAGGACTTGA-CAGT-GTTTTCTTTTGGAGATGGGAGTCTAGAAGTCTGGGAGAATCAAGAA-CGTAGTG-AACTAAGCA-TGTGTCATAATCTATCCTGTGTAT-CAGTGACTCTGTGTTAACTATAACTAATTAGTCCTAGAGCTAATTGGTGTGGGGATTCTGTAATGAGAGATCTCGTTCGGTTTGACCTGTAAAAAAAACTCTCTGGTTGCGGATTCTGTGNGCCGAAAAAAAAA]

[+] EMBL AU063006             [TTCTGTTCCCAAAAAAAAAAAATCGTACAATTCCGCAGCCTAACCCTAGTCGACGCGAACCTCCAGCCGCCGGAAGATGCTGCGACCAGCGGCGGCGGCGGCGGGCAGGGCCATCCGGCGAGCCGCGTACCACTCCGACGGCGCCCCTCCTCCCCGCAAGCTCCGGGGCCCCCGATTCAGCCC TCTCAACAGGCACAA CCACGAGGTTGATG CGTTGCTCGAGG AAATCAAGAATACGCCGGTTAGCATGATTT CCGATGACTTAATTATCAGAACTGTGCGGCAGTACGTAAACCTCT GAATTGCAGCTTCTGTTATTATTTGTTGTGTGTCTTGTTA A CCATCCTAAATTGATAATTACTATTACCTGTCCTTGTCT GCTTCTCT                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU085751             [                                                                                                                                                                       cCCCCGGATTCAGCCCTTNTCAACAGGCACAACCCACGAGNTTGATGCCGTTGCTCGAGGAAAATCAAGAATACGCCGNTTAGCATGATTTCCCGATGACTTAATTATCAGAACTGTGCGGCAGTACGTAAACCTCT GAATTGCAGCTTCTGTTATTATTTGTTGTGTGTCTTGTTA A CCATCCTAAATTGATAATTACTATTACCTGTCCTTGTCT GCTTCTCT AGTTCTATTTTGGCTCGTCAGCAGATTCTTGTTCAAAATGTTCTCCGATCATGGGTTATTGCTGCAGCAGTTCTCTCAGGCTATTGCTGGGGGTACA ACAGAGTGGCCAAACGTCCTGTGGCTGGCTCTGAA CCACCAACAGAAGATGAGGTGTAGAGGACTTGA CAGT GTTTTCTTTTGGAGATGGGAGTCTAGAAGTCTGGGAGAATCAAGAA CGTAGTG AACTAAGCA TGTGTCATAATCTATCCTGTGTAT CAGTGACTCTGTGTTAACTATAACTAATTAGTCCTAGAGCTAATTGGTGTGGGGATTCTGTAATGAGAGATCTCGTTCGGTTTGACCTGTAAAAAAAA                                    ]
[+] EMBL BI811361             [                                                                                                                                                                                                                                                                                   CAGAACTGT CGCCAGTACGTAAACCTCTGGAATTCCCGCTTCTGTTATTATTTGTTGTGTGTCTTGTTACACCCATCCTAAATTGATAATTACTATTACC GTCCTTGTCTGGCTTCTCT AGTTCTATTTTGGCTCGTCACCAGATTCTTGTTCCAAATGTTCTCCGATCATGGGTTATTGCTGCA CAGTTCTCTCAGGCTATT CTGGGGGTACACACAGAGTGGCCCAACGTCCTGT GCTGGCTCTGAACCCCCCACCCGAAGATGAGGTGTAGAGGACTTGACCCGTGGTTTTCTTTTGGAGATGGGAGTCTAGAAGTCTGGGAGAATCCAGAACCGTAGTG AACTAAGCACTGTGTCATAATCTATCCTGTGTATCCCGTGACTCTGTGTTAACTATAACTAATTAGTCCTAGAGCTAATTGGTGTGGGGATTCTGTAATGAGAGATCTCGTTCGGTTTGACCCAAAAAAAAAA                                    ]
[+] EMBL C91879               [                                                                                                                                                                                                                                                                                                                                                                                               GTCT GCTTCTCTCAGTTCTATTTTGGCTCGTCAGCAGATTCTTGTTCAAAATGTTCTCCGATCATGGGTTATTGCTGCAGCAGTTCTCTCAGGCTATTGCTGGGGGTACA ACAGAGTGGCCAAACGTCCTGTGGCTGGCTCTGAA CCACCAACAGAAGATGAGGTGTAGAGGACTTGA CAGT GTTTTCTTTTGGAGATGGGAGTCTAGAAGTCTGGGAGAATCAAGAA CGTAGTGAAACTAAGCA TGTGTCATAATCTATCCTGTGTAT CAGTGACTCTGTGTTAACTATAACTAATTAGTCCTAGAGCTAATTGGTGTGGGGATTCTGTAATGAGAGATCTCGTTCGGTTTGACCTGTACATGTNTCTCTCTGGTTGCGGATTCTGTGNGCCGAAAAAAAAA]


>consensus_14400#0 TTCTGTTCCCAAAAAAAAAAAATCGTACAATTCCGCAGCCTAACCCTAGTCGACGCGAAC CTCCAGCCGCCGGAAGATGCTGCGACCAGCGGCGGCGGCGGCGGGCAGGGCCATCCGGCG AGCCGCGTACCACTCCGACGGCGCCCCTCCTCCCCGCAAGCTCCGGGGCCCCCGATTCAG CCCTCTCAACAGGCACAACCACGAGGTTGATGCGTTGCTCGAGGAAATCAAGAATACGCC GGTTAGCATGATTTCCGATGACTTAATTATCAGAACTGTGCGGCAGTACGTAAACCTCTG AATTGCAGCTTCTGTTATTATTTGTTGTGTGTCTTGTTAACCATCCTAAATTGATAATTA CTATTACCTGTCCTTGTCTGCTTCTCTAGTTCTATTTTGGCTCGTCAGCAGATTCTTGTT CAAAATGTTCTCCGATCATGGGTTATTGCTGCAGCAGTTCTCTCAGGCTATTGCTGGGGG TACAACAGAGTGGCCAAACGTCCTGTGGCTGGCTCTGAACCACCAACAGAAGATGAGGTG TAGAGGACTTGACAGTGTTTTCTTTTGGAGATGGGAGTCTAGAAGTCTGGGAGAATCAAG AACGTAGTGAACTAAGCATGTGTCATAATCTATCCTGTGTATCAGTGACTCTGTGTTAAC TATAACTAATTAGTCCTAGAGCTAATTGGTGTGGGGATTCTGTAATGAGAGATCTCGTTC GGTTTGACCTGTAAAAAAAACTCTCTGGTTGCGGATTCTGTGNGCCGAAAAAAAAA



consensusID : consensus_14400#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 668
fasta sequence
                              [CTGAAGGAGGACGTAGTGGCGACGGTGGGAAGCTATGGTGGCGTGGACGCTACGACCTGCGGCGGCGGGCAGGGCCATCCGGCGAGCCGCGTACCACTCCGACGGCGCCCCTCCTCCCCGCAAGCTCCGGGGCCCCCGCTTCAGCTCTTTCAATAGGAACAACCATGAGATCGATGCGTTGCTTGAGGAAGTCAAGAATACACCGGTTAACATGATCACCGATGACCTAATGATCCGAACCGTGCGGCATTCTTTTCTGGCTCGTCAGGAGATTCTGTATCAAAATGTTCTGCGAT-CATGG-GT-GGTTGTGGCAGCGGTACTCACAGGGTATAGCTGGGGGTACAACAAATTTGCTGAAAGTTCTACTGTCGGATCTGAACCACCAAAAGAACATGAGGGGAAGTAGAAGACTTGACGATTGTTTTTGCTCTTTACGGAAGACTGAGTGTTTGGGATAAAATGCAGTGAATTGTGCCTCAGAAACTCGCTTGTAAATTGGTCAATTTCTGTTAACTGACTATCCTGTAAGACAGGGCTTGGGCGACCAATCTTGCTCCGCCTTTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGAAAAAAAAAAGGAAAAAAAAAAA]

[+] EMBL CF338394             [CTGAAGGAGGACGTAGTGGCGACGGTGGGAAGCTATGGTGGCGTGGACGCTACGACCTGCGGCGGCGGGCAGGGCCATCCGGCGAGCCGCGTACCACTCCGACGGCGCCCCTCCTCCCCGCAAGCTCCGGGGCCCCCGCTTCAGCTCTTTCAATAGGAACAACCATGAGATCGATGCGTTGCTTGAGGAAGTCAAGAATACACCGGTTAACATGATCACCGATGACCTAATGATCCGAACCGTGCGGCATTCTTTTCTGGCTCGTCAGGAGATTCTGTATCAAAATGTTCTGCGAT CATGGNGT GGTTGTGGCAGCGGTACTCACAGGGTATAGCTGGGGGTACAACAAATTTGCTGAAAGTTCTACTGTCGGATCTGAACCACCAAAAGAACATGAGGGGAAGTAGAAGACTTGACGATTGTTTTTGCTCTTTACGGAAGACTGAGTGTTTGGGATAAAATGCAGTGAATTGTGCCTCAGAAACTCGCTTGTAAATTGGTCAATTTCTGTTAACTGA                                                                                                                                                       ]
[+] EMBL CF340377             [                  GCGACGGTGGGAAGCTATGGTGGCGTGGACGCTACGACCTGCGGCGGCGGGCAGGGCCATCCGGCGAGCCGCGTACCACTCCGACGGCGCCCCTCCTCCCCGCAAGCTCCGGGGCCCCCGCTTCAGCTCTTTCAATAGGAACAACCATGAGATCGATGCGTTGCTTGAGGAAGTCAAGAATACACCGGTTAACATGATCACCGATGACCTAATGATCCGAACCGTGCGGCATTCTTTTCTGGCTCGTCAGGAGATTCTGTATCAAAATGTTCTGCGATNCATGG GT GGTTGTGGCAGCGGTACTCACAGGGTATAGCTGGGGGTACAACAAATTTGCTGAAAGTTCTACTGTCGGATCTGAACCACCAAAAGAACATGAGGGGAAGTAGAAGACTTGACGATTGTTTTTGCTCTTTACGGAAGACTGAGTGTTTGGGATAAAATGCAGTGAATTGTGCCTCAGAAACTCGCTTGTAAATTGGTCAATTTCTGTTAACTGACTATCCTGTAAGACAGGGCTTGGGCGACCAATCTTGCTCCGCCTTTTACAA                                                                                                    ]
[+] EMBL CF340004             [                  GCGACGGTGGGAAGCTATGGTGGCGTGGACGCTACGACCTGCGGCGGCGGGCAGGGCCATCCGGCGAGCCGCGTACCACTCCGACGGCGCCCCTCCTCCCCGCAAGCTCCGGGGCCCCCGCTTCAGCTCTTTCAATAGGAACAACCATGAGATCGATGCGTTGCTTGAGGAAGTCAAGAATACACCGGTTAACATGATCACCGATGACCTAATGATCCGAACCGTGCGGCATTCTTTTCTGGCTCGTCAGGAGATTCTGTATCAAAATGTTCTGCGAT CATGG GT GGTTGTGGCAGCGGTACTCACAGGGTATAGCTGGGGGTACAACAAATTTGCTGAAAGTTCTACTGTCGGATCTGAACCACCAAAAGAACATGAGGGGAAGTAGAAGACTTGACGATTGTTTTTGCTCTTTACGGAAGACTGAGTGTTTGGGATAAAATGCAGTGAATTGTGCCTCAGAAACTCGCTTGTAAATTGGTCAATTTCTGTTAACTGACTATCCTGTAAGACAGGGCTTGGGCGACCAATCTTGCTCCGCCTTTTACAA                                                                                                    ]
[+] EMBL CF339345             [                  GCGACGGTGGGAAGCTATGGTGGCGTGGACGCTACGACCTGCGGCGGCGGGCAGGGCCATCCGGCGAGCCGCGTACCACTCCGACGGCGCCCCTCCTCCCCGCAAGCTCCGGGGCCCCCGCTTCAGCTCTTTCAATAGGAACAACCATGAGATCGATGCGTTGCTTGAGGAAGTCAAGAATACACCGGTTAACATGATCACCGATGACCTAATGATCCGAACCGTGCGGCATTCTTTTCTGGCTCGTCAGGAGATTCTGTATCAAAATGTTCTGCGAT CATGG GT GGTTGTGGCAGCGGTACTCACAGGGTATAGCTGGGGGTACAACAAATTTGCTGAAAGTTCTACTGTCGGATCTGAACCACCAAAAGAACAT                                                                                                                                                                                                                                                                                  ]
[+] EMBL CF340251             [                  GCGACGGTGGGAAGCTATGGTGGCGTGGACGCTACGACCTGCGGCGGCGGGCAGGGCCATCCGGCGAGCCGCGTACCACTCCGACGGCGCCCCTCCTCCCCGCAAGCTCCGGGGCCCCCGCTTCAGCTCTTTCAATAGGAACAACCATGAGATCGATGCGTTGCTTGAGGAAGTCAAGAATACACCGGTTAACATGATCACCGATGACCTAATGATCCGAACCGTGCGGCATTCTTTTCTGGCTCGTCAGGAGATTCTGTATCAAAATGTTCTGCGAT CATGG GTGGGTTGTGGCAGCGGTACTCACAGGGTATAGCTGGGGGTACAACAAATTTGCTGAAAGTTCTACTGTCGGATCTGAACCACCAAAAGAACATGAGGGGAAGTAGAAGACTTGACGATTGTTTTTGCTCTTTACGGAAGACTGAGTGTTTGGGATAAAATGCAGTGAATTGTGCCTCAGAA                                                                                                                                                                                          ]
[+] EMBL CF340436             [                  GCGACGGTGGGAAGCTATGGTGGCGTGGACGCTACGACCTGCGGCGGCGGGCAGGGCCATCCGGCGAGCCGCGTACCACTCCGACGGCGCCCCTCCTCCCCGCAAGCTCCGGGGCCCCCGCTTCAGCTCTTTCAATAGGAACAACCATGAGATCGATGCGTTGCTTGAGGAAGT AAGAATACACCGGTTAACATGATCACCGATGACCTAATGATCCGAACCGTGCGGCATTCTTTTCTGGCTCGTCAGGAGATTCTGTATCAAAATGTTCTGCGAT CATGG GT GGTTGTGGCAGCGGTACTCACAGGGTATAGCTGGGGGTACAACAAATTTGCTGAAAGTTCTACTGTCGGATCTGAACCACCAAAAGAACATGAG                                                                                                                                                                                                                                                                               ]
[+] EMBL AK071499             [                    GACGGTGGGAAGCTATGGTGGCGTGGACGCTACGACCTGCGGCGGCGGGCAGGGCCATCCGGCGAGCCGCGTACCACTCCGACGGCGCCCCTCCTCCCCGCAAGCTCCGGGGCCCCCGCTTCAGCTCTTTCAATAGGAACAACCATGAGATCGATGCGTTGCTTGAGGAAGTCAAGAATACACCGGTTAACATGATCACCGATGACCTAATGATCCGAACCGTGCGGCATTCTTTTCTGGCTCGTCAGGAGATTCTGTATCAAAATGTTCTGCGAT CATGG GT GGTTGTGGCAGCGGTACTCACAGGGTATAGCTGGGGGTACAACAAATTTGCTGAAAGTTCTACTGTCGGATCTGAACCACCAAAAGAACATGAGGGGAAGTAGAAGACTTGACGATTGTTTTTGCTCTTTACGGAAGACTGAGTGTTTGGGATAAAATGCAGTGAATTGTGCCTCAGAAACTCGCTTGTAAATTGGTCAATTTCTGTTAACTGACTATCCTGTAAGACAGGGCTTGGGCGACCAATCTTGCTCCGCCTTT                                                                                                         ]
[+] EMBL AU174719             [                                                        CTGCGGCGGCGGGCAGGGCCATCCGGCGAGCCGCGTACCACTCCGACGGCGCCCCTCCTCCCCGCAAGCTCCGGGGCCCCCGCTTCAGCTCTTTCAATAGGAACAACCATGAGATCGATGCGTTGCTTGAGGAAGTCAAGAATACACCGGTTAACATGATCACCGATGACCTAATGATCCGAACCGTGCGGCATTCTTTTCTGGCTCGTCAGGAGATTCTGTATCAAAATGTTCTGCGAT CATGG GT GGTTGTGGCAGCGGTACTCACAGGGTATAGCTGGGGGTACAACAAATTTGCTGAAAGTTCTACTGTCGGATCTGAACCACCAAAAGAACATGAGGGGAAGTAGAAGACTTGACGATTGTTTTTGCTCTTTACGGA                                                                                                                                                                                                                                      ]
[+] EMBL CF336592             [                                                                                                                                                                                                                                                                                                                                                                                                                                    ATTGTTTTTGCTCTTTACGGAAGACTGAGTGTTTGGGATAAAATGCAGTGAATTGTGCCTCAGAAACTCGCTTGTAAATTGGTCAATTTCTGTTAACTGACTATCCTGTAAGACAGGGCTTGGGCGACCAATCTTGCTCCGCCTTTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGAAAAAAAAAAGGAAAAAAAAAAA]


>consensus_14400#1 CTGAAGGAGGACGTAGTGGCGACGGTGGGAAGCTATGGTGGCGTGGACGCTACGACCTGC GGCGGCGGGCAGGGCCATCCGGCGAGCCGCGTACCACTCCGACGGCGCCCCTCCTCCCCG CAAGCTCCGGGGCCCCCGCTTCAGCTCTTTCAATAGGAACAACCATGAGATCGATGCGTT GCTTGAGGAAGTCAAGAATACACCGGTTAACATGATCACCGATGACCTAATGATCCGAAC CGTGCGGCATTCTTTTCTGGCTCGTCAGGAGATTCTGTATCAAAATGTTCTGCGATCATG GGTGGTTGTGGCAGCGGTACTCACAGGGTATAGCTGGGGGTACAACAAATTTGCTGAAAG TTCTACTGTCGGATCTGAACCACCAAAAGAACATGAGGGGAAGTAGAAGACTTGACGATT GTTTTTGCTCTTTACGGAAGACTGAGTGTTTGGGATAAAATGCAGTGAATTGTGCCTCAG AAACTCGCTTGTAAATTGGTCAATTTCTGTTAACTGACTATCCTGTAAGACAGGGCTTGG GCGACCAATCTTGCTCCGCCTTTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGAAAAAAAAAAGGAAA AAAAAAAA



consensusID : consensus_14400#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 457
fasta sequence
                              [CGGTTAACATGATCACCGATGACCTAATGATCCGAACCGTGCGGCATTCTTTTCTGGCTCGTCAGGAGATTCTGTATCAAAATGTTCTGCGATCATGGGTGGTTGTGGCAGCGGTACTCACAGGGTATAGCTGGGGGTACAACAAATTTGCTGAAAGTTCTACTGTCGGATCTGAACCACCAAAAGAACATGAGGGGAAGTAGAAGACTTGACGATTGTTTTTGCTCTTTACGGAAGACTGAGTGTTTGGGATAAAATGCAGTGAATTGTGCCTCAGAAACTCGCTTGTAAATTGGTCAATTTCTGTTAACTGACTATCCTGTAAGACAGGGCTTGGGCGACCAATCTTGCTCCGCCTTTTACAATCTCCAGCTGGTTTGGGGTGTTTCATGCTCTAGATAGGCTGCTGCTGGTCGATAATCAACGGATGCTCTTTCTTTTTATAGTTAAAAAAAAA]

[+] EMBL AU174718             [CGGTTAACATGATCACCGATGACCTAATGATCCGAACCGTGCGGCATTCTTTTCTGGCTCGTCAGGAGATTCTGTATCAAAATGTTCTGCGATCATGGGTGGTTGTGGCAGCGGTACTCACAGGGTATAGCTGGGGGTACAACAAATTTGCTGAAAGTTCTACTGTCGGATCTGAACCACCAAAAGAACATGAGGGGAAGTAGAAGACTTGACGATTGTTTTTGCTCTTTACGGAAGACTGAGTGTTTGGGATAAAATGCAGTGAATTGTGCCTCAGAAACTCGCTTGTAAATTGGTCAATTTCTGTTAACTGACTATCCTGTAAGACAGGGCTTGGGCGACCAATCTTGCTCCGCCTTTTACAATCTCCAGCTGGTTTGGGGTGTTTCATGCTCTAGATAGGCTGCTGCTGGTCGATAATCAACGGATGCTCTTTCTTTTTATAGTTAAAAAAAAA]
[+] EMBL CF336700             [                                                                                                                                                                                                                      ATTGTTTTTGCTCTTTACGGAAGACTGAGTGTTTGGGATAAAATGCAGTGAATTGTGCCTCAGAAACTCGCTTGTAAATTGGTCAATTTCTGTTAACTGACTATCCTGTAAGACAGGGCTTGGGCGACCAATCTTGCT                                                                                                         ]


>consensus_14400#2 CGGTTAACATGATCACCGATGACCTAATGATCCGAACCGTGCGGCATTCTTTTCTGGCTC GTCAGGAGATTCTGTATCAAAATGTTCTGCGATCATGGGTGGTTGTGGCAGCGGTACTCA CAGGGTATAGCTGGGGGTACAACAAATTTGCTGAAAGTTCTACTGTCGGATCTGAACCAC CAAAAGAACATGAGGGGAAGTAGAAGACTTGACGATTGTTTTTGCTCTTTACGGAAGACT GAGTGTTTGGGATAAAATGCAGTGAATTGTGCCTCAGAAACTCGCTTGTAAATTGGTCAA TTTCTGTTAACTGACTATCCTGTAAGACAGGGCTTGGGCGACCAATCTTGCTCCGCCTTT TACAATCTCCAGCTGGTTTGGGGTGTTTCATGCTCTAGATAGGCTGCTGCTGGTCGATAA TCAACGGATGCTCTTTCTTTTTATAGTTAAAAAAAAA



consensusID : consensus_14400#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 310
fasta sequence
                              [CGGCAATTCTGTTCCCAANAAAAAAAAATCGTACAATTCCGCAGCCTAACCCTAGTCGACGCGAACCTCCAGCNGCCGGAAGATGCTGCGACCAGCGGCGGCGGCGGCGGGCAGGGCCATCCGGCGAGCCGNGTACCANTCCGACGGCGCCCCTNCTCCCCGCAAGCTCCGGGGCCCCCGATTCAGCCCTCTCAACAGGCACAACCACGAGGTTGATGCGTTGCTCGAGGAAATCAAGAATACGCTGGTTAGCATGATTTTCCGATGATTTNATTATCAGNACTGTNNGGAAATTCTATNTTGGGCTNGG]

[+] EMBL OSC19841             [CGGCAATTCTGTTCCCAANAAAAAAAAATCGTACAATTCCGCAGCCTAACCCTAGTCGACGCGAACCTCCAGCNGCCGGAAGATGCTGCGACCAGCGGCGGCGGCGGCGGGCAGGGCCATCCGGCGAGCCGNGTACCANTCCGACGGCGCCCCTNCTCCCCGCAAGCTCCGGGGCCCCCGATTCAGCCCTCTCAACAGGCACAACCACGAGGTTGATGCGTTGCTCGAGGAAATCAAGAATACGCTGGTTAGCATGATTTTCCGATGATTTNATTATCAGNACTGTNNGGAAATTCTATNTTGGGCTNGG]


>consensus_14400#3 CGGCAATTCTGTTCCCAANAAAAAAAAATCGTACAATTCCGCAGCCTAACCCTAGTCGAC GCGAACCTCCAGCNGCCGGAAGATGCTGCGACCAGCGGCGGCGGCGGCGGGCAGGGCCAT CCGGCGAGCCGNGTACCANTCCGACGGCGCCCCTNCTCCCCGCAAGCTCCGGGGCCCCCG ATTCAGCCCTCTCAACAGGCACAACCACGAGGTTGATGCGTTGCTCGAGGAAATCAAGAA TACGCTGGTTAGCATGATTTTCCGATGATTTNATTATCAGNACTGTNNGGAAATTCTATN TTGGGCTNGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14400#0      ------------------------------------------------------------
consensus_14400#3      ------------------------------------------------------------
consensus_14400#1      CTGAAGGAGGACGTAGTGGCGACGGTGGGAAGCTATGGTGGCGTGGACGCTACGACCTGC 60
consensus_14400#2      ------------------------------------------------------------
                                                                                   

consensus_14400#0      ------------------------------------------------------------
consensus_14400#3      ------------------------------------------------------------
consensus_14400#1      GGCGGCGGGCAGGGCCATCCGGCGAGCCGCGTACCACTCCGACGGCGCCCCTCCTCCCCG 120
consensus_14400#2      ------------------------------------------------------------
                                                                                   

consensus_14400#0      ------------------------------------------------------------
consensus_14400#3      ------------------------------------------------------------
consensus_14400#1      CAAGCTCCGGGGCCCCCGCTTCAGCTCTTTCAATAGGAACAACCATGAGATCGATGCGTT 180
consensus_14400#2      ------------------------------------------------------------
                                                                                   

consensus_14400#0      -----------------------------TTCTGTTC-CCAAAAAA--AAAAAATCGTAC 28
consensus_14400#3      -----------------------CGGCAATTCTGTTC-CCAANAAA--AAAAAATCGTAC 34
consensus_14400#1      GCTTGAGGAAGTCAAGAATACACCGGTTAACATGATCACCGATGACCTAATGATCCGAAC 240
consensus_14400#2      -----------------------CGGTTAACATGATCACCGATGACCTAATGATCCGAAC 37
                                                       ** ** ** *  *   **  *  ** **

consensus_14400#0      AATTCCGCAGCCTAACCCTAGTCGACGCGAACCTCCAGCCGCCGGAAGATGCTGCGACCA 88
consensus_14400#3      AATTCCGCAGCCTAACCCTAGTCGACGCGAACCTCCAGCNGCCGGAAGATGCTGCGACCA 94
consensus_14400#1      CGTGCGGCATTCTTTTCTGGCTCGTCAGGAGATTCTG--TATCAAAATGTTCTGCGATCA 298
consensus_14400#2      CGTGCGGCATTCTTTTCTGGCTCGTCAGGAGATTCTG--TATCAAAATGTTCTGCGATCA 95
                         * * ***  **   *    *** *  **   **       *  **  * ****** **

consensus_14400#0      GCGGCGGCGGCGGCGGGCAGGGCCATCCGGCGAGCCGCGTACCACTCCGACGGCGCCCCT 148
consensus_14400#3      GCGGCGGCGGCGGCGGGCAGGGCCATCCGGCGAGCCGNGTACCANTCCGACGGCGCCCCT 154
consensus_14400#1      TGGGTGGTTGTGGCAGCGGTACTCACAGGGTATAGCTGGGGGTACAACAAATTTGCTGAA 358
consensus_14400#2      TGGGTGGTTGTGGCAGCGGTACTCACAGGGTATAGCTGGGGGTACAACAAATTTGCTGAA 155
                         ** **  * *** *       **   **     *  *    *   * *    **    

consensus_14400#0      CCTCC--CCGCAAGCTCCGGGGCCCCCGATTCAGCCCTCTCAACAGGCACAACCACGA-G 205
consensus_14400#3      NCTCC--CCGCAAGCTCCGGGGCCCCCGATTCAGCCCTCTCAACAGGCACAACCACGA-G 211
consensus_14400#1      AGTTCTACTGTCGGATCTGAA-CCACCAAAAGAACATGAGGGGAAGTAGAAGACTTGACG 417
consensus_14400#2      AGTTCTACTGTCGGATCTGAA-CCACCAAAAGAACATGAGGGGAAGTAGAAGACTTGACG 214
                         * *  * *   * ** *   ** ** *   * *         **    *  *  ** *

consensus_14400#0      GTTGATGCGTTGCTCGAGGAAATCAAGAATACGCCGGTTAGCATGATTT-CCGATGACTT 264
consensus_14400#3      GTTGATGCGTTGCTCGAGGAAATCAAGAATACGCTGGTTAGCATGATTTTCCGATGATTT 271
consensus_14400#1      ATTGTTTTTGCTCTTTACGGAAGACTGAGTGTTTGGGATAAAATG------CAGTGAATT 471
consensus_14400#2      ATTGTTTTTGCTCTTTACGGAAGACTGAGTGTTTGGGATAAAATG------CAGTGAATT 268
                        *** *      **  * * **    ** *     ** **  ***      *  *** **

consensus_14400#0      AATTATCAGAA--CTGTGCGGCAGTACGTAAACCTCTGAATTGCAGCTTCTGTTATTATT 322
consensus_14400#3      NATTATCAGNA--CTGTNNGGAAAT---TCTATNTTGGGCTNGG---------------- 310
consensus_14400#1      GTGCCTCAGAAACTCGCTTGTAAATTGGTCAATTTCTG-TTAACTGACTATCCTGTAAGA 530
consensus_14400#2      GTGCCTCAGAAACTCGCTTGTAAATTGGTCAATTTCTG-TTAACTGACTATCCTGTAAGA 327
                            **** *    *   *  * *   *  *  *  *  *                   

consensus_14400#0      TGTTGTGTGTCTTGTTAACCATCCTAAATTGATAATTACTATTACCTGTCCTTGTCTGCT 382
consensus_14400#3      ------------------------------------------------------------
consensus_14400#1      CAGGGCTTGGGCGACCAATCTTGCTCCGCCTTTTACAAAAAAAAAAAAAAAAAAAAAAAA 590
consensus_14400#2      CAGGGCTTGGGCGACCAATCTTGCTCCGCCTTTTACAATCTCCAGCTGGTTTGGGGTGTT 387
                                                                                   

consensus_14400#0      TCTCTAGTTCTATTTTGGCTCGTCAGCAGATTCTTGTTCAAAATGTTCTCCGATCATGGG 442
consensus_14400#3      ------------------------------------------------------------
consensus_14400#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGAAAAA 650
consensus_14400#2      TCATGCTCTAGATAGGCTGCTGCTGGTCGATAATCAACGGATGCTCTTTCTTTTTATAGT 447
                                                                                   

consensus_14400#0      TTATTGCTGCAGCAGTTCTCTCAGGCTATTGCTGGGGGTACAACAGAGTGGCCAAACGTC 502
consensus_14400#3      ------------------------------------------------------------
consensus_14400#1      AAAAAGGAAAAAAAAAAA------------------------------------------ 668
consensus_14400#2      TAAAAAAAAA-------------------------------------------------- 457
                                                                                   

consensus_14400#0      CTGTGGCTGGCTCTGAACCACCAACAGAAGATGAGGTGTAGAGGACTTGACAGTGTTTTC 562
consensus_14400#3      ------------------------------------------------------------
consensus_14400#1      ------------------------------------------------------------
consensus_14400#2      ------------------------------------------------------------
                                                                                   

consensus_14400#0      TTTTGGAGATGGGAGTCTAGAAGTCTGGGAGAATCAAGAACGTAGTGAACTAAGCATGTG 622
consensus_14400#3      ------------------------------------------------------------
consensus_14400#1      ------------------------------------------------------------
consensus_14400#2      ------------------------------------------------------------
                                                                                   

consensus_14400#0      TCATAATCTATCCTGTGTATCAGTGACTCTGTGTTAACTATAACTAATTAGTCCTAGAGC 682
consensus_14400#3      ------------------------------------------------------------
consensus_14400#1      ------------------------------------------------------------
consensus_14400#2      ------------------------------------------------------------
                                                                                   

consensus_14400#0      TAATTGGTGTGGGGATTCTGTAATGAGAGATCTCGTTCGGTTTGACCTGTAAAAAAAACT 742
consensus_14400#3      ------------------------------------------------------------
consensus_14400#1      ------------------------------------------------------------
consensus_14400#2      ------------------------------------------------------------
                                                                                   

consensus_14400#0      CTCTGGTTGCGGATTCTGTGNGCCGAAAAAAAAA 776
consensus_14400#3      ----------------------------------
consensus_14400#1      ----------------------------------
consensus_14400#2      ----------------------------------
                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)