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Oryza sativa
cluster # 14405 cluster # 14405       Sequences # 16       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14405#0 length = 1604 sequences # 14  
consensus_14405#1 length = 651 sequences # 1  
consensus_14405#2 length = 504 sequences # 1  

consensusID : consensus_14405#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 1604
fasta sequence
                              [TTTCCCATTTCGCTCACCTGTTCCCCTCCTCCGCCCTCTCCCCAACTCGCCATTTTCCCCG-TCTTCCACAGTGACAACCACCACCCCACGCTTTCCCCTTCCTCCTCGCGATCCAGCAGCGGGAGAGATGGATCGGCCGCCGCCGGATCAGCAGCGGCAGAAGCAGGCGCCGCTCTTCTCGCCGTACCAGATGCCCCGCTTCCGCCTCAACCACCGGGTGGTGCTGGCGCCGATGACGCGGTGCAGGGCGATCGGCGGGGTGCCCGGCCCGGCGCTGGCGGAGTACTACGCGCAGCGGACCACCCAGGGTGGCCTGCTCATCTCCGAGGGCACCGTCGTCTCGCCCGCTGGCCCGGGGTTTCCTCATGTCCCTGGGATATACAATCAAGAGCAGACTGATGCATGGAAGAAGGTGGTGGATGCTGTTCATGCCAAGGGAGGCATCTTTTTCTGCCAGTTATGGCATGTAGGCAGAGCTTCTCACCAAGTATACCAGCCAAACGGTGCTGCACCAATATCCTCAACTGATAAGCCAATATCAGCAAGATGGAGAATACTGATGCCTGATGGCTCCTATGGCAAGTATCCTAAACCTAGGCGCCTGGCAGCATCGGAAATACCTGAAATTGTCGAACAATATCGTCAAGCCGCCATTAATGCCATTGAAGCAGGTTTTGATGGCATTGAGATCCATGGTGCTCATGGCTATATCATTGATCAATTCCTAAAGGATGGAATCAATGACCGCACTGACGAGTATGGTGGCTCACTTTCCAACCGCTGCCGGTTCCTACTTGA-GGTAACTAGGGCTGTGGTTTCTGCCATTGGAGCAGACCGAGTCGCGGTGAGGATATCACCAGCCATTGATCACCTTGACGCCTATGATTCAGACCCCATTAAGCTCGGCATGGCCGTTGTTGAGCGGCTGAATGCTCTCCAGCAGCAGTCA-GGGCGGCTCGCCTACCTCCACGTCACGCAGCCACGGTACACCGCCTACGGGCAGACCGAGTCTGGGCAGCATGGCAGTGCCGAGGAGGAGAGCCGCCTGATGCGCACCCTCCGGGGCACGTACCAGGGCACATTCATGTGCAGTGGCGGCTACACGCGGGAGCTTGG-GTTGGAAGCAGTGGAGAGCGGCGATGCC-GACCTGGTGTCGTACGGGCGGCTCTTCATATCAA-ACCC-GGACCTGGTCG-AGCGGTTCAGGCTGAACGCCGGGCTG-AACAAGTACGTGCGTAAGACA-TTCTACACGCCCGATCCTGTCGTGGGTTACACGGACTATCCGTTCCTCGGACAGCCTAAGTCGCGGATGTAAATGTACTGCGGGATAAGT-AAA-TCA-AGGATACGATTGTGTATTGTAAGGAAAATAAAGGGCA-ACGGTGAGGTGATTTAGCTTATTT-TTGGGACCTAATTTG-ACGGTAATTTATTC-TTTCACC-AAAT-CTGATATGAT-CCATT-GCT-GATTCAGTAGCTACTCTAGCCTATGTAAA-CCTTGGGTCATCAGCACAGATTGTATCTATATGTGTATTGCATAATGTTTCATATCAGTTGTCTAGCAGATTTATGCATCGTA-CCAGTTAGTAACTGTTATTTTGATGGGAAAAAAAAAA]

[+] EMBL AK071203             [TTTCCCATTTCGCTCACCTGTTCCCCTCCTCCGCCCTCTCCCCAACTCGCCATTTTCCCCG TCTTCCACAGTGACAACCACCACCCCACGCTTTCCCCTTCCTCCTCGCGATCCAGCAGCGGGAGAGATGGATCGGCCGCCGCCGGATCAGCAGCGGCAGAAGCAGGCGCCGCTCTTCTCGCCGTACCAGATGCCCCGCTTCCGCCTCAACCACCGGGTGGTGCTGGCGCCGATGACGCGGTGCAGGGCGATCGGCGGGGTGCCCGGCCCGGCGCTGGCGGAGTACTACGCGCAGCGGACCACCCAGGGTGGCCTGCTCATCTCCGAGGGCACCGTCGTCTCGCCCGCTGGCCCGGGGTTTCCTCATGTCCCTGGGATATACAATCAAGAGCAGACTGATGCATGGAAGAAGGTGGTGGATGCTGTTCATGCCAAGGGAGGCATCTTTTTCTGCCAGTTATGGCATGTAGGCAGAGCTTCTCACCAAGTATACCAGCCAAACGGTGCTGCACCAATATCCTCAACTGATAAGCCAATATCAGCAAGATGGAGAATACTGATGCCTGATGGCTCCTATGGCAAGTATCCTAAACCTAGGCGCCTGGCAGCATCGGAAATACCTGAAATTGTCGAACAATATCGTCAAGCCGCCATTAATGCCATTGAAGCAGGTTTTGATGGCATTGAGATCCATGGTGCTCATGGCTATATCATTGATCAATTCCTAAAGGATGGAATCAATGACCGCACTGACGAGTATGGTGGCTCACTTTCCAACCGCTGCCGGTTCCTACTTGA GGTAACTAGGGCTGTGGTTTCTGCCATTGGAGCAGACCGAGTCGCGGTGAGGATATCACCAGCCATTGATCACCTTGACGCCTATGATTCAGACCCCATTAAGCTCGGCATGGCCGTTGTTGAGCGGCTGAATGCTCTCCAGCAGCAGTCA GGGCGGCTCGCCTACCTCCACGTCACGCAGCCACGGTACACCGCCTACGGGCAGACCGAGTCTGGGCAGCATGGCAGTGCCGAGGAGGAGAGCCGCCTGATGCGCACCCTCCGGGGCACGTACCAGGGCACATTCATGTGCAGTGGCGGCTACACGCGGGAGCTTGG GTTGGAAGCAGTGGAGAGCGGCGATGCC GACCTGGTGTCGTACGGGCGGCTCTTCATATCAA ACCC GGACCTGGTCG AGCGGTTCAGGCTGAACGCCGGGCTG AACAAGTACGTGCGTAAGACA TTCTACACGCCCGATCCTGTCGTGGGTTACACGGACTATCCGTTCCTCGGACAGCCTAAGTCGCGGATGTAAATGTACTGCGGGATAAGT AAA TCA AGGATACGATTGTGTATTGTAAGGAAAATAAAGGGCA ACGGTGAGGTGATTTAGCTTATTT TTGGGACCTAATTTG ACGGTAATTTATTC TTTCACC AAAT CTGATATGAT CCATT GCT GATTCAGTAGCTACTCTAGCCTATGTAAA CCTTGGGTCATCAGCACAGATTGTATCTATATGTGTATTGCATAATGTTTCATATCA                                                                ]
[+] EMBL OSS10929A            [TTNCCCATTTCGCTCACCTGTTCCCCTCCTCCGCCCTCTCCCCAACTCGCCATTTTCCCCG TCTTCCACAGTGACAACCACCACCCCACGCTTTCCCCTTCCTCCTCGCGATCCAGCAGCGGGAGAGATGGATCGGCCGCCGNCGGATCAGCAGCGGCAGAAGCAGGCGNCGCTCTTCTCGNCGTACCAGATGNCCCGCTTCCGCCTCAACCACCGGGTGGTGCTGGCGACGATGACGCGGTGCAGGGCGATCGnc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK104843             [               ACCTGTTCCCCTCCTCCGCCCTCTCCCCAACTCGCCATTTTCCCCG TCTTCCACAGTGACAACCACCACCCCACGCTTTCCCCTTCCTCCTCGCGATCCAGCAGCGGGAGAGATGGATCGGCCGCCGCCGGATCAGCAGCGGCAGAAGCAGGCGCCGCTCTTCTCGCCGTACCAGATGCCCCGCTTCCGCCTCAACCACCGGGTGGTGCTGGCGCCGATGACGCGGTGCAGGGCGATCGGCGGGGTGCCCGGCCCGGCGCTGGCGGAGTACTACGCGCAGCGGACCACCCAGGGTGGCCTGCTCATCTCCGAGGGCACCGTCGTCTCGCCCGCTGGCCCGGGGTTTCCTCATGTCCCTGGGATATACAATCAAGAGCAGACTGATGCATGGAAGAAGGTGGTGGATGCTGTTCATGCCAAGGGAGGCATCTTTTTCTGCCAGTTATGGCATGTAGGCAGAGCTTCTCACCAAGTATACCAGCCAAACGGTGCTGCACCAATATCCTCAACTGATAAGCCAATATCAGCAAGATGGAGAATACTGATGCCTGATGGCTCCTATGGCAAGTATCCTAAACCTAGGCGCCTGGCAGCATCGGAAATACCTGAAATTGTCGAACAATATCGTCAAGCCGCCATTAATGCCATTGAAGCAGGCTTTGATGGCATTGAGATCCATGGTGCTCATGGCTATATCATTGATCAATTCCTAAAGGATGGAATCAATGACCGCACTGACGAGTATGGTGGCTCACTTTCCAACCGCTGCCGGTTCCTACTTGA GGTAACTAGGGCTGTGGTTTCTGCCATTGGAGCAGACCGAGTCGCGGTGAGGATATCACCAGCCATTGATCACCTTGACGCCTATGATTCAGACCCCATTAAGCTCGGCATGGCCGTTGTTGAGCGGCTGAATGCTCTCCAGCAGCAGTCA GGGCGGCTCGCCTACCTCCACGTCACGCAGCCACGGTACACCGCCTACGGGCAGACCGAGTCTGGGCAGCATGGCAGTGCCGAGGAGGAGAGCCGCCTGATGCGCACCCTCCGGGGCACGTACCAGGGCACATTCATGTGCAGTGGCGGCTACACGCGGGAGCTTGG GTTGGAAGCAGTGGAGAGCGGCGATGCC GACCTGGTGTCGTACGGGCGGCTCTTCATATCAA ACCC GGACCTGGTCG AGCGGTTCAGGCTGAACGCCGGGCTG AACAAGTACGTGCGTAAGACA TTCTACACGCCCGATCCTGTCGTGGGTTACACGGACTATCCGTTCCTCGGACAGCCTAAGTCGCGGATGTAAATGTACTGCGGGATAAGT AAA TCA AGGATACGATTGTGTATTGTAAGGAAAATAAAGGGCA ACGGTGAGGTGATTTAGCTTATTT TTGGGACCTAATTTG ACGGTAATTTATTC TTTCACC AAAT CTGATATGAT CCATT GCT GATTCAGTAGCTACTCTAGCCTATGTAAA CCTTGGGTCATCAGCACAGATTGTATCTATATGTGTATTGCAT                                                                              ]
[+] EMBL CB669879             [                          TCCTCCCTTCACTCCCCAACTCGCCATTTTCCCCGATATTCCACAGTGACAACCACCACCCCACGCTTTCCCCTTCCTCCTCGCGATCCAGCAGCGGGAGAGATGGATCGGCCGCCGCCGGATCAGCAGCGGCAGAAGCAGGCGCCGCTCTTCTCGCCGTACCAGATGCCCCGCTTCCGCCTCAACCACCGGGTGGTGCTGGCGCCGATGACGCGGTGCAGGGCGATCGGCGGGGTGCCCGGCCCGGCGCTGGCGGAGTACTACGCGCAGCGGACCACCCAGGGTGGCCTGCTCATCTCCGAGGGCACCGTCGTCTCGCCCGCTGGCCCGGGGTTTCCTCATGTCCCTGGGATATACAATCAAGAGCAGACTGATGCATGGAAGAAGGTGGTGGATGCTGTTCATGCCAAGGGAGGCATCTTTTTCTGCCAGTTATGGCATGTAGGCAGAGCTTCTCACCAAGTATACCAGCCAAACGGTGCTGCACCAATATCCTCAACTGATAAGCCAATATCAGCAAGATGGAGAATACTGATGCCTGATGGCTCCTATGGCAAGTATCCTAAACCTAGGCGCCTGGCAGCATCGGAAATACCTGAAATTGTCGAACAATATCGTCAAGCCGCCATTAATGCCATTGAAGCAGGTTTTGATGGCATTGAGATCCATGGTGCTCATGGCTATATCATTGATCAATTCCTAAAGGATGGAATCAATGACCGCACTGACGAGTATGGTGGCTCACTTTCCAA CGCTGCCGGTTCCTACTTGA GGTAACTAGGGCTGTGGTTTCTGCCATTGGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB641417             [                                                                                                           CGCGATCCAGCAGCGGGAGAGATGGATCGGCCGCCGCCGGATCAGCAGCGGCAGAAGCAGGCGCCGCTCTTCTCGCCGTACCAGATGCCCCGCTTCCGCCTCAACCACCGGGTGGTGCTGGCGCCGATGACGCGGTGCAGGGCGATCGGCGGGGTGCCCGGCCCGGCGCTGGCGGAGTACTACGCGCAGCGGACCACCCAGGGTGGCCTGCTCATCTCCGAGGGCACCGTCGTCTCGCCCGCTGGCCCGGGGTTTCCTCATGTCCCTGGGATATACAATCAAGAGCAGACTGATGCATGGAAGAAGGTGGTGGATGCTGTTCATGCCAAGGGAGGCATCTTTTTCTGCCAGTTATGGCATGTAGGCAGAGCTTCTCACCAAGTATACCAGCCAAACGGTGCTGCACCAATATCCTCAACTGATAAGCCAATATCAGCAAGATGGAGAATACTGATGCCTGATGGCTCCTATGGCAAGTATCCTAAACCTAGGCGCCTGGCAGCATCGGAAATACCTGAAATTGTCGAACAATATCGTCAAGCCGCCATTAATGCCATTGAAGCAGGTTTTGATGGCATTGAGATCCATGGTGCTCATGGCTATATCATTGATCAATTCCTAAAGGATGGAATCAATGACCGCACTGACGAGTATGGTGGCTCACTTTCCAACCGCTGCCGGTTCCTACTTGA GGTAACTAGGGCTGTGGTTTCTGCCATTGGAGCAGACCGAGTCGCGGTGAGGATATCACCAGCCATTGATCACCTTGACGCCTATGATTCAGACCCCATTAAGCTCGGCATGGCCGTTGTTGAGCGGCTGAATGCTCTCCAGCAGCAGTCA GGGCGGCTCGCCTACCTCCACGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB651181             [                                                                                                                                                CGGATCAGCAGCGGCAGAAGCAGGCGCCGCTCTTCTCGCCGTACCAGATGCCCCGCTTCCGCCTCAACCACCGGGTGGTGCTGGCGCCGATGACGCGGTGCAGGGCGATCGGCGGGGTGCCCGGCCCGGCGCTGGCGGAGTACTACGCGCAGCGGACCACCCAGGGTGGCCTGCTCATCTCCGAGGGCACCGTCGTCTCGCCCGCTGGCCCGGGGTTTCCTCATGTCCCTGGGATATACAATCAAGAGCAGACTGATGCATGGAAGAAGGTGGTGGATGCTGTTCATGCCAAGGGAGGCATCTTTTTCTGCCAGTTATGGCATGTAGGCAGAGCTTCTCACCAAGTATACCAGCCAAACGGTGCTGCACCAATATCCTCAACTGATAAGCCAATATCAGCAAGATGGAGAATACTGATGCCTGATGGCTCCTATGGCAAGTATCCTAAACCTAGGCGCCTGGCAGCATCGGAAATACCTGAAATTGTCGAACAATATCGTCAAGCCGCCATTAATGCCATTGAAGCAGGTTTTGATGGCATTGAGATCCATGGTGCTCATGGCTATATCATTGATCAATTCCTAAAGGATGGAATCAATGACCGCACTGACGAGTATGGTGGCTCACTTTCCAACCGCTGCCGGTTCCTACTTGA GGTAACTAGGGCTGTGGTTTCTGCCATTGGAGCAGACCGAGTCGCGGTGAGGATATCACCAGCCATTGATCACCTTGACGCCTATGATTCAGACCCCATTAAGCTCGGCATGGCCGTTGTTGAGCGGCTGAATGCTCTCCAGCAGCAGTCA GGGCGGCTCGCCTACCTCCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CF322757             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TCTCACCAAGTATACCAGCCAAACGGTGCTGCACCAATATCCTCAACTGATAAGCCAATATCAGCAAGATGGAGAATACTGATGCCTGATGGCTCCTATGGCAAGTATCCTAAACCTAGGCGCCTGGCAGCATCGGAAATACCTGAAATTGTCGAACAATATCGTCAAGCCGCCATTAATGCCATTGAAGCAGGTTTTGATGGCATTGAGATCCATGGTGCTCATGGCTATATCATTGATCAATTCCTAAAGGATGGAATCAATGACCGCACTGACGAGTATGGTGGCTCACTTTCCAACCGCTGCCGGTTCCTACTTGAGGGTAACTAGGGCTGTGGTTTCTGCCATTGGAGCAGACCGAGTCGCGGTGAGGATATCACCAGCCATTGATCACCTTGACGCCTATGATTCAGACCCCATTAAGCTCGGCATGGCCGTTGTTGAGCGGCTGAATGCTCTCC GCAGCAGTCAGGGGCGGCTCGCCTACCTCCACGTCACGCAGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CB651182             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CAGACCGAGTCGCGGTGAGGATATCACCAGCCATTGATCACCTTGACGCCTATGATTCAGACCCCATTAAGCTCGGCATGGCCGTTGTTGAGCGGCTGAATGCTCTCCAGCAGCAGTCA GGGCGGCTCGCCTACCTCCACGTCACGCAGCCACGGTACACCGCCTACGGGCAGACCGAGTCTGGGCAGCATGGCAGTGCCGAGGAGGAGAGCCGCCTGATGCGCACCCTCCGGGGCACGTACCAGGGCACATTCATGTGCAGTGGCGGCTACACGCGGGAGCTTGG GTTGGAAGCAGTGGAGAGCGGCGATGCC GACCTGGTGTCGTACGGGCGGCTCTTCATATCAA ACCC GGACCTGGTCG AGCGGTTCAGGCTGAACGCCGGGCTG AACAAGTACGTGCGTAAGACA TTCTACACGCCCGATCCTGTCGTGGGTTACACGGACTATCCGTTCCTCGGACAGCCTAAGTCGCGGATGTAAATGTACTGCGGGATAAGT AAA TCA AGGATACGATTGTGTATTGTAAGGAAAATAAAGGGCA ACGGTGAGGTGATTTAGCTTATTT TTGGGACCTAATTTG ACGGTAATTTATTC TTTCACC AAAT CTGATATGAT CCATT GCT GATTCAGTAGCTACTCTAGCCTATGTAAA CCTTGGGTCATCAGCACAGATTGTATCTATATGTGTATTGCATAATGTTTCATATCAGTTGTCTAGCAGATTTATGCATCGTA CCAGTTAGTAACTGTTATTTTGATGGGAAAAgt    ]
[-] EMBL CB669878             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CAGACCGAGTCGCGGTGAGGATATCACCAGCCATTGATCACCTTGACGCCTATGATTCAGACCCCATTAAGCTCGGCATGGCCGTTGTTGAGCGGCTGAATGCTCTCCAGCAGCAGTCA GGGCGGCTCGCCTACCTCCACGTCACGCAGCCACGGTACACCGCCTACGGGCAGACCGAGTCTGGGCAGCATGGCAGTGCCGAGGAGGAGAGCCGCCTGATGCGCACCCTCCGGGGCACGTACCAGGGCACATTCATGTGCAGTGGCGGCTACACGCGGGAGCTTGG GTTGGAAGCAGTGGAGAGCGGCGATGCC GACCTGGTGTCGTACGGGCGGCTCTTCATATCAA ACCC GGACCTGGTCG AGCGGTTCAGGCTGAACGCCGGGCTG AACAAGTACGTGCGTAAGACA TTCTACACGCCCGATCCTGTCGTGGGTTACACGGACTATCCGTTCCTCGGACAGCCTAAGTCGCGGATGTAAATGTACTGCGGGATAAGT AAA TCA AGGATACGATTGTGTATTGTAAGGAAAATAAAGGGCA ACGGTGAGGTGATTTAGCTTATTT TTGGGACCTAATTTG ACGGTAATTTATTC TTTCACC AAAT CTGATATGAT CCATT GCT GATTCAGTAGCTACTCTAGCCTATGTAAA CCTTGGGTCATCAGCACAGATTGTATCTATATGTGTATTGCATAATGTTTCATATCAGTTGTGTAGCAGATTTATGCATCGTA CCAGTTAGTAACT                        ]
[+] EMBL BI807868             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CTACACGCGGGAGCTTGGCGTTGGAACCCGTGGAGA CGGCGATGCC GACCTGGTGTCGTACGGGCGGCTCTTCATATCCA ACCC GGACCTGGTCG AGCGGTTCAGGCTGAACGCCGGGCTG AACAAGTACGTGCGCAAGACACTTCTACACGCCCGATCCTGTCGTGGGTTACACGGACTATCCGTTCCTCGGACCGCCTAAGTCGCGGATGTAAATGTACTGCGGGATAAGT AAA TCACAGGATACGATTGTGTATTGTAAGGAAAATAAAGGGCACACGGTGAGGTGATTTAGCTTATTTCTTGGGACCTAATTTGCACGGTAATTTATTC TTTCACC CAAT CTGATATGAT CCCTT GCT GATTCCGTAGCTACTCTAGCCTATGTAAA CCTTGGGTCATCAGCCCAGATTGTATCTATATGTGTATTGCATAATGTTTCATATCAGTTGTCTAGCAGATTTATGCATCGTACCCAGTTAGTAACTGTTATTTTGATGGGAAAAAAAAAA]
[+] EMBL BM420981             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGCGATGCCNGACCTGGTGTCGTACGGGCGGCTCTTCATATCAA ACCC GGACCT GTCG A CGGTTCAGGCTGAACGCCGGGCTG AACAAGTACGTGCGCAAGACA TTCTACACGCCCGATCCTGTCGTGGGTTACACGGACTATCCGTTCCTCGGACAGCCTAAGTCGCGGATGTAAATGTACTGCGGGATAAGT AAA TCA AGGATACGATTGTGTATTGTAAGGAAAATAAAGGGCA ACGGTGAGGTGATTTAGCTTATTT TTGGGACCTAA TTG ACGGTAATTTATTCNNTTCACC AAAT CTGATATGAT CCATT GCT GATTCAGTAGCTACTCTAGCCTATGTAAACCCTTGGGTCATCAGCACAGATTGTATCTATATGTGTATTGCATAATGTTTCATATCAGTTGTCTAGCAGATTTATGCATCGTA CCAGTTAGTAACTGTTATTTTGATGGGAAAA      ]
[+] EMBL BQ908147             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GTGTCGTACGGGCGGCTCTTCATATCAATACCCTGGACCTGGTCGTACCGGTTCAGGCTGAACGCCGGGCTGTAACAAGTACGTGCGCAAGACA TTCTACACGCCCGATCCTGTCGT GGTTACACGGACTATCCGTTCCTCGGACAGCCTAAGTCGCGGATGTAAATGTACTGCGGGATAAGTGAAAGTCA AGGATACGATTGTGTATTGTAAGGAAAATAAAGGGCA ACGGTGAGGTGATTTAGCTTATTT TTGGGACCTAATTTG ACGGTAATTTATTC TTTCACCAAAATGCTGATATGATGCCATTGGCTGGATTCAGTAGCTACTCTAGCCTATGTAAA CCTTGGGTCATCAGCACAGATTGTATCTATATGTGTATTGCATAATGTTTCATATCAGTTGTCTAGCAGATTTATGCATCGTA CCAGTTAGTAACTGTTATTTTGATGGGAAAAAAA   ]
[+] EMBL AU065853             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGCGTAAGACA TTCTACACGCCCGATCCTGTCGTGGGTTACACGGACTATCCGTTCCTCGGACAGCCTAAGTNGCGGATGTAAATGTACTGCGGGATAAGT AAA TCA AGGATACGATTGTGTATTGTAAGGAAAATAAAGGGCA ACGGTGAGGTGATTTAGCTTATTT TTGGGACCTAATTTG ACGGTAATTTATTC TTTCACC AAAT CTGATATGAT CCATT GCT GATTCAGTAGCTACTCTAGCCTATGTAAA CCTTGGGTCATCAGCACAGATTGTATCTATATGTGTATTGCATAATGTTTCATATCAGTTGTCTAGCAGATTTATGCATCGTAaaaaa                                 ]
[+] EMBL CF931996             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           tcacTTTG ACGGTAATTTATTC TTTCACC AAAT CTGATATGAT CCATT GCT GATTCAGTAGCTACTCTAGCCTATGTAAA CCTTGGGTCATCAGCACAGATTGTATCTATATGTGTATTGCATAATGTTTCATATCAaaaaaa                                                          ]


>consensus_14405#0 TTTCCCATTTCGCTCACCTGTTCCCCTCCTCCGCCCTCTCCCCAACTCGCCATTTTCCCC GTCTTCCACAGTGACAACCACCACCCCACGCTTTCCCCTTCCTCCTCGCGATCCAGCAGC GGGAGAGATGGATCGGCCGCCGCCGGATCAGCAGCGGCAGAAGCAGGCGCCGCTCTTCTC GCCGTACCAGATGCCCCGCTTCCGCCTCAACCACCGGGTGGTGCTGGCGCCGATGACGCG GTGCAGGGCGATCGGCGGGGTGCCCGGCCCGGCGCTGGCGGAGTACTACGCGCAGCGGAC CACCCAGGGTGGCCTGCTCATCTCCGAGGGCACCGTCGTCTCGCCCGCTGGCCCGGGGTT TCCTCATGTCCCTGGGATATACAATCAAGAGCAGACTGATGCATGGAAGAAGGTGGTGGA TGCTGTTCATGCCAAGGGAGGCATCTTTTTCTGCCAGTTATGGCATGTAGGCAGAGCTTC TCACCAAGTATACCAGCCAAACGGTGCTGCACCAATATCCTCAACTGATAAGCCAATATC AGCAAGATGGAGAATACTGATGCCTGATGGCTCCTATGGCAAGTATCCTAAACCTAGGCG CCTGGCAGCATCGGAAATACCTGAAATTGTCGAACAATATCGTCAAGCCGCCATTAATGC CATTGAAGCAGGTTTTGATGGCATTGAGATCCATGGTGCTCATGGCTATATCATTGATCA ATTCCTAAAGGATGGAATCAATGACCGCACTGACGAGTATGGTGGCTCACTTTCCAACCG CTGCCGGTTCCTACTTGAGGTAACTAGGGCTGTGGTTTCTGCCATTGGAGCAGACCGAGT CGCGGTGAGGATATCACCAGCCATTGATCACCTTGACGCCTATGATTCAGACCCCATTAA GCTCGGCATGGCCGTTGTTGAGCGGCTGAATGCTCTCCAGCAGCAGTCAGGGCGGCTCGC CTACCTCCACGTCACGCAGCCACGGTACACCGCCTACGGGCAGACCGAGTCTGGGCAGCA TGGCAGTGCCGAGGAGGAGAGCCGCCTGATGCGCACCCTCCGGGGCACGTACCAGGGCAC ATTCATGTGCAGTGGCGGCTACACGCGGGAGCTTGGGTTGGAAGCAGTGGAGAGCGGCGA TGCCGACCTGGTGTCGTACGGGCGGCTCTTCATATCAAACCCGGACCTGGTCGAGCGGTT CAGGCTGAACGCCGGGCTGAACAAGTACGTGCGTAAGACATTCTACACGCCCGATCCTGT CGTGGGTTACACGGACTATCCGTTCCTCGGACAGCCTAAGTCGCGGATGTAAATGTACTG CGGGATAAGTAAATCAAGGATACGATTGTGTATTGTAAGGAAAATAAAGGGCAACGGTGA GGTGATTTAGCTTATTTTTGGGACCTAATTTGACGGTAATTTATTCTTTCACCAAATCTG ATATGATCCATTGCTGATTCAGTAGCTACTCTAGCCTATGTAAACCTTGGGTCATCAGCA CAGATTGTATCTATATGTGTATTGCATAATGTTTCATATCAGTTGTCTAGCAGATTTATG CATCGTACCAGTTAGTAACTGTTATTTTGATGGGAAAAAAAAAA



consensusID : consensus_14405#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 651
fasta sequence
                              [TCGGCATGGCCGTTGTTGAGCGGCTGAATGCTCTCCAGCAGCAGTCAGGGCGGCTCGCATACCTCCACGTCACGCAGCCACGGTACACCGCCTACGGGCAGACCGAGTCTGGGCAGCATGGCAGTGCCGAGGAGGAGAGCCGCCTGATGCGCACCCTCCGGGGCACGTACCAGGGCACATTCATGTGCAGTGGCGGCTACACGCGGGAGCTTGGGTTGGAAGCAGTGGAGAGCGGCGATGCCGACCTGGTGTCGTACGGGCGGCTCTTCATATCAAACCCGGACCTGGTCGAGCGGTTCAGGCTGAACCCCGGGTTGAACAAGTACGTGCGTAAGACATTTTACACGCCCGATCCTGTGGTGGGTTACACGGACTATCCGTTCCTCGGACAGCCTAAGTCGCGGATGTAAATGTACTGCGGGATAAGTAAATCAAGGATACGATTGTGTATTGTAAGGAAAATAAAGGGCAACGGTGAGGTGATTTAGCTTATTTTTGGGCCCTAATTTGACGGTAATTTATTCTTTCCCCAAATCTGATATGATCCATTGCTGATTCAGTAGCTACTCTAGCCTATGTAACCCTTGGGTCATCAGCACAGATTGTATAGATATGTGTATTGCATAATGTTTCATAAAAAAAAAAAAAAGG]

[-] EMBL CB641418             [TCGGCATGGCCGTTGTTGAGCGGCTGAATGCTCTCCAGCAGCAGTCAGGGCGGCTCGCATACCTCCACGTCACGCAGCCACGGTACACCGCCTACGGGCAGACCGAGTCTGGGCAGCATGGCAGTGCCGAGGAGGAGAGCCGCCTGATGCGCACCCTCCGGGGCACGTACCAGGGCACATTCATGTGCAGTGGCGGCTACACGCGGGAGCTTGGGTTGGAAGCAGTGGAGAGCGGCGATGCCGACCTGGTGTCGTACGGGCGGCTCTTCATATCAAACCCGGACCTGGTCGAGCGGTTCAGGCTGAACCCCGGGTTGAACAAGTACGTGCGTAAGACATTTTACACGCCCGATCCTGTGGTGGGTTACACGGACTATCCGTTCCTCGGACAGCCTAAGTCGCGGATGTAAATGTACTGCGGGATAAGTAAATCAAGGATACGATTGTGTATTGTAAGGAAAATAAAGGGCAACGGTGAGGTGATTTAGCTTATTTTTGGGCCCTAATTTGACGGTAATTTATTCTTTCCCCAAATCTGATATGATCCATTGCTGATTCAGTAGCTACTCTAGCCTATGTAACCCTTGGGTCATCAGCACAGATTGTATAGATATGTGTATTGCATAATGTTTCATAAAAAAAAAAAAAAGG]


>consensus_14405#1 TCGGCATGGCCGTTGTTGAGCGGCTGAATGCTCTCCAGCAGCAGTCAGGGCGGCTCGCAT ACCTCCACGTCACGCAGCCACGGTACACCGCCTACGGGCAGACCGAGTCTGGGCAGCATG GCAGTGCCGAGGAGGAGAGCCGCCTGATGCGCACCCTCCGGGGCACGTACCAGGGCACAT TCATGTGCAGTGGCGGCTACACGCGGGAGCTTGGGTTGGAAGCAGTGGAGAGCGGCGATG CCGACCTGGTGTCGTACGGGCGGCTCTTCATATCAAACCCGGACCTGGTCGAGCGGTTCA GGCTGAACCCCGGGTTGAACAAGTACGTGCGTAAGACATTTTACACGCCCGATCCTGTGG TGGGTTACACGGACTATCCGTTCCTCGGACAGCCTAAGTCGCGGATGTAAATGTACTGCG GGATAAGTAAATCAAGGATACGATTGTGTATTGTAAGGAAAATAAAGGGCAACGGTGAGG TGATTTAGCTTATTTTTGGGCCCTAATTTGACGGTAATTTATTCTTTCCCCAAATCTGAT ATGATCCATTGCTGATTCAGTAGCTACTCTAGCCTATGTAACCCTTGGGTCATCAGCACA GATTGTATAGATATGTGTATTGCATAATGTTTCATAAAAAAAAAAAAAAGG



consensusID : consensus_14405#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 504
fasta sequence
                              [GATTCGGCCGAGCTCGTGCCGAATTCGGCACGAGCCCCAACTCGCCATTTTCCCCGTCTTCCACAGTGACAACCACCACCCCAGGCTTTCCCCTTCCTCCTCGCGATCCAACAACGGGAGANATNGATCGGCCGCCNCCGGATCNNCANCGGCAGAAGCAGGCGCCGCTCTTCTCGCCGTACCAGATGCCCCGCTTCCGCCTCAACCACCGGGTGGTGCTGGCGCCGATGACCGGTGCAAGGCGATCGGNGGGGTGCCCGGCCCGGCGCTGGCGGAATNCTACGCTCANCGGACACCCAGGGTGGCCTGCTCTTCTCCNAAGGCACCGTCNTCTCNCCCGCTGGCCCGGGGTTTCCTCATGTCCCTGGGATATACNATCCANANCAGACTGATGCTGGAAAAAAGTGGTGGATGCTGTTCATGCCAAGGGAGGCATCTTTTTCTGCCANTTNTGGCATGTNGGCAGAACTTCTCNCCAANTNTNCCANCCNAACGGTGNTGNNC]

[+] EMBL BE228984             [GATTCGGCCGAGCTCGTGCCGAATTCGGCACGAGCCCCAACTCGCCATTTTCCCCGTCTTCCACAGTGACAACCACCACCCCAGGCTTTCCCCTTCCTCCTCGCGATCCAACAACGGGAGANATNGATCGGCCGCCNCCGGATCNNCANCGGCAGAAGCAGGCGCCGCTCTTCTCGCCGTACCAGATGCCCCGCTTCCGCCTCAACCACCGGGTGGTGCTGGCGCCGATGACCGGTGCAAGGCGATCGGNGGGGTGCCCGGCCCGGCGCTGGCGGAATNCTACGCTCANCGGACACCCAGGGTGGCCTGCTCTTCTCCNAAGGCACCGTCNTCTCNCCCGCTGGCCCGGGGTTTCCTCATGTCCCTGGGATATACNATCCANANCAGACTGATGCTGGAAAAAAGTGGTGGATGCTGTTCATGCCAAGGGAGGCATCTTTTTCTGCCANTTNTGGCATGTNGGCAGAACTTCTCNCCAANTNTNCCANCCNAACGGTGNTGNNC]


>consensus_14405#2 GATTCGGCCGAGCTCGTGCCGAATTCGGCACGAGCCCCAACTCGCCATTTTCCCCGTCTT CCACAGTGACAACCACCACCCCAGGCTTTCCCCTTCCTCCTCGCGATCCAACAACGGGAG ANATNGATCGGCCGCCNCCGGATCNNCANCGGCAGAAGCAGGCGCCGCTCTTCTCGCCGT ACCAGATGCCCCGCTTCCGCCTCAACCACCGGGTGGTGCTGGCGCCGATGACCGGTGCAA GGCGATCGGNGGGGTGCCCGGCCCGGCGCTGGCGGAATNCTACGCTCANCGGACACCCAG GGTGGCCTGCTCTTCTCCNAAGGCACCGTCNTCTCNCCCGCTGGCCCGGGGTTTCCTCAT GTCCCTGGGATATACNATCCANANCAGACTGATGCTGGAAAAAAGTGGTGGATGCTGTTC ATGCCAAGGGAGGCATCTTTTTCTGCCANTTNTGGCATGTNGGCAGAACTTCTCNCCAAN TNTNCCANCCNAACGGTGNTGNNC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14405#0      TTTCCCATTTCGCTCACCTGTTCCCCTCCTCCGCCCTCTCCCCAACTCGCCATTTTCCCC 60
consensus_14405#1      ------------------------------------------------------------
consensus_14405#2      ------------------------------------------------------------
                                                                                   

consensus_14405#0      GTCTTCCACAGTGACAACCACCACCCCACGCTTTCCCCTTCCTCCTCGCGATCCAGCAGC 120
consensus_14405#1      ------------------------------------------------------------
consensus_14405#2      ------------------------------------------------------------
                                                                                   

consensus_14405#0      GGGAGAGATGGATCGGCCGCCGCCGGATCAGCAGCGGCAGAAGCAGGCGCCGCTCTTCTC 180
consensus_14405#1      ------------------------------------------------------------
consensus_14405#2      ------------------------------------------------------------
                                                                                   

consensus_14405#0      GCCGTACCAGATGCCCCGCTTCCGCCTCAACCACCGGGTGGTGCTGGCGCCGATGACGCG 240
consensus_14405#1      ------------------------------------------------------------
consensus_14405#2      ------------------------------------------------------------
                                                                                   

consensus_14405#0      GTGCAGGGCGATCGGCGGGGTGCCCGGCCCGGCGCTGGCGGAGTACTACGCGCAGCGGAC 300
consensus_14405#1      ------------------------------------------------------------
consensus_14405#2      ------------------------------------------------------------
                                                                                   

consensus_14405#0      CACCCAGGGTGGCCTGCTCATCTCCGAGGGCACCGTCGTCTCGCCCGCTGGCCCGGGGTT 360
consensus_14405#1      ------------------------------------------------------------
consensus_14405#2      ------------------------------------------------------------
                                                                                   

consensus_14405#0      TCCTCATGTCCCTGGGATATACAATCAAGAGCAGACTGATGCATGGAAGAAGGTGGTGGA 420
consensus_14405#1      ------------------------------------------------------------
consensus_14405#2      ------------------------------------------------------------
                                                                                   

consensus_14405#0      TGCTGTTCATGCCAAGGGAGGCATCTTTTTCTGCCAGTTATGGCATGTAGGCAGAGCTTC 480
consensus_14405#1      ------------------------------------------------------------
consensus_14405#2      ------------------------------------------------------------
                                                                                   

consensus_14405#0      TCACCAAGTATACCAGCCAAACGGTGCTGCACCAATATCCTCAACTGATAAGCCAATATC 540
consensus_14405#1      ------------------------------------------------------------
consensus_14405#2      ------------------------------------------------------------
                                                                                   

consensus_14405#0      AGCAAGATGGAGAATACTGATGCCTGATGGCTCCTATGGCAAGTATCCTAAACCTAGGCG 600
consensus_14405#1      ------------------------------------------------------------
consensus_14405#2      ------------------------------------------------------------
                                                                                   

consensus_14405#0      CCTGGCAGCATCGGAAATACCTGAAATTGTCGAACAATATCGTCAAGCCGCCATTAATGC 660
consensus_14405#1      ------------------------------------------------------------
consensus_14405#2      ------------------------------------------------------------
                                                                                   

consensus_14405#0      CATTGAAGCAGGTTTTGATGGCATTGAGATCCATGGTGCTCATGGCTATATCATTGATCA 720
consensus_14405#1      ------------------------------------------------------------
consensus_14405#2      ------------------------------------------------------------
                                                                                   

consensus_14405#0      ATTCCTAAAGGATGGAATCAATGACCGCACTGACGAGTATGGTGGCTCACTTTCCAACCG 780
consensus_14405#1      ------------------------------------------------------------
consensus_14405#2      ------------------------------------------------------------
                                                                                   

consensus_14405#0      CTGCCGGTTCCTACTTGAGGTAACTAGGGCTGTGGTTTCTGCCATTGGAGCAGACCGAGT 840
consensus_14405#1      ------------------------------------------------------------
consensus_14405#2      ------------------------------------------------------------
                                                                                   

consensus_14405#0      CGCGGTGAGGATATCACCAGCCATTGATCACCTTGACGCCTATGATTCAGACCCCATTAA 900
consensus_14405#1      ------------------------------------------------------------
consensus_14405#2      ------------------------------------------------------------
                                                                                   

consensus_14405#0      GCTCGGCATGGCCGTTGTTGAGCGGCTGAATGCTCTCCAGCAGCAGTCAGGGCGGCTCGC 960
consensus_14405#1      --TCGGCATGGCCGTTGTTGAGCGGCTGAATGCTCTCCAGCAGCAGTCAGGGCGGCTCGC 58
consensus_14405#2      ----GATTCGGCCGAGCTCGTGC---CGAAT-----TCGGCACGAGCCC---CAACTCGC 45
                           *    *****   * * **    ****      * ***  ** *    *  *****

consensus_14405#0      CTACCTCCACGTCA--CGCAGCCACGGTACACCGCCTACGGGCAGACCGAGTCTGGGCAG 1018
consensus_14405#1      ATACCTCCACGTCA--CGCAGCCACGGTACACCGCCTACGGGCAGACCGAGTCTGGGCAG 116
consensus_14405#2      CATTTTCCCCGTCTTCCACAGTGACAAC-CACCACCC-CAGGCTTTCCCCTTCCTCCTCG 103
                            *** ****   * ***  **    **** **  * ***   **   **      *

consensus_14405#0      CATGGCAGTGCCGAGGAGGAGAG--CCGCCTGATGCGCACCCTCCGGGGCACGTACCAGG 1076
consensus_14405#1      CATGGCAGTGCCGAGGAGGAGAG--CCGCCTGATGCGCACCCTCCGGGGCACGTACCAGG 174
consensus_14405#2      CGATCCAACAACGGGAGANATNGATCGGCCGCCNCCGGATCNNCANCGGCAGAAGCAGGC 163
                       *    **    ** *    *  *  * ***     ** * *  *   ****    *  * 

consensus_14405#0      GCACATTCATGTGCAGTGGCGGCTACACGCGGGAGCTTGGGTTGGAAGCAGTGGAGAGCG 1136
consensus_14405#1      GCACATTCATGTGCAGTGGCGGCTACACGCGGGAGCTTGGGTTGGAAGCAGTGGAGAGCG 234
consensus_14405#2      GCCGCTCTTCTCGCCGTACCAGATGCCCC-----GCTTCCGCCTCAACCACCGGGTGGTG 218
                       **   *      ** **  * * * * *      ****  *    ** **  **   * *

consensus_14405#0      GCGATGCCGAC--CTGGTGTCGTACGGGCGGCTCTTCATATCAAACCCGGACCTGGTCGA 1194
consensus_14405#1      GCGATGCCGAC--CTGGTGTCGTACGGGCGGCTCTTCATATCAAACCCGGACCTGGTCGA 292
consensus_14405#2      CTGGCGCCGATGACCGGTGCAAGGCGATCGGNGG--GGTGCCCGGCCCGGCGCTGGCGGA 276
                         *  *****   * ****     **  ***       *  *   *****  ****  **

consensus_14405#0      GCGGTTCA---GGCTGAACGCCGGGCTGAACAAGTACGTGCGTAAGACATTCTACACGCC 1251
consensus_14405#1      GCGGTTCA---GGCTGAACCCCGGGTTGAACAAGTACGTGCGTAAGACATTTTACACGCC 349
consensus_14405#2      ATNCTACGCTCANCGGACACCCAGGGTGGCCTGCTCTTCTCCNAAGGCACCGTCNTCTCN 336
                           * *      * **   ** ** **  *   *     *  *** **   *   * * 

consensus_14405#0      CGATCCTGTCGTGGGTTACACGGACTATCCGTTCCTCGGACAGCCTAAGTCG--CGGATG 1309
consensus_14405#1      CGATCCTGTGGTGGGTTACACGGACTATCCGTTCCTCGGACAGCCTAAGTCG--CGGATG 407
consensus_14405#2      CCCGCTGGCCCGGGGTTTCCTCA--TGTCCCTGGGATATACNATCCANANCAGACTGATG 394
                       *   *  *    ***** *      * *** *       **   * *   *   * ****

consensus_14405#0      TAAATGTACTGCGGGATAAGTAAATCAAGGATACGATTGTGTATTGTAAGGAAAATAAAG 1369
consensus_14405#1      TAAATGTACTGCGGGATAAGTAAATCAAGGATACGATTGTGTATTGTAAGGAAAATAAAG 467
consensus_14405#2      CTGGAAAAAAGTGGTGGATGCTGTTCATGCCAAGGGAGGCATCTTTTTCTGCCANTTNTG 454
                              *  * **   * *    *** *   * *   *  * ** *   *  * *   *

consensus_14405#0      GGCAACGGTGAGGTGATTTAGCTTATTTTTGGGACCTAATTTGACGGTAATTTATTCTTT 1429
consensus_14405#1      GGCAACGGTGAGGTGATTTAGCTTATTTTTGGGCCCTAATTTGACGGTAATTTATTCTTT 527
consensus_14405#2      GCATGTNGGCAGAACTTCTCNCCAANTNTNCCANCCNAAC--GGTGNTGNNC-------- 504
                       *      *  **    * *  *  * * *     ** **   *  * *            

consensus_14405#0      CACCAAATCTGATATGATCCATTGCTGATTCAGTAGCTACTCTAGCCTATGTAAACCTTG 1489
consensus_14405#1      CCCCAAATCTGATATGATCCATTGCTGATTCAGTAGCTACTCTAGCCTATGTAACCCTTG 587
consensus_14405#2      ------------------------------------------------------------
                                                                                   

consensus_14405#0      GGTCATCAGCACAGATTGTATCTATATGTGTATTGCATAATGTTTCATATCAGTTGTCTA 1549
consensus_14405#1      GGTCATCAGCACAGATTGTATAGATATGTGTATTGCATAATGTTTCATAAAAAAAAAAAA 647
consensus_14405#2      ------------------------------------------------------------
                                                                                   

consensus_14405#0      GCAGATTTATGCATCGTACCAGTTAGTAACTGTTATTTTGATGGGAAAAAAAAAA 1604
consensus_14405#1      AAGG--------------------------------------------------- 651
consensus_14405#2      -------------------------------------------------------
                                                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)