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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14416#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1431 fasta sequence
[GCCTCCGATTTTCTTCTCTTCTCTTCTTCTTCTTCTTTCCCTTCTCTTCTCCGCCGCCGACGACCGAATAAGGAGAGTAGAGGAGAGAGAGAGAGAGACAGAGAGATGGCTGCGGCGGCGCGTCTCCTCGCGCGTATCTCGAGGCAGGGCGTGGCCTCGGCCGCGGCGGCGAGGCGGCAGGCGGAAGCGGCGGCGCTGCTCGGCGCTTCGGCGGGGCGGCACTTGGCCCCGCCCTGCTCTTCGATCAAGGCCTTGCCTCTGCTGAATCAGCCGAGGCTGTACTCAACTTCAACCTTTCAAAGGTTTGGGTTTTCATCTTCTGCTCCCCAGCAAGATGATAAGGCAGCAAATAAACAGAC-AGAGGATGGAGTTAATAAAAGCACTCAATCTGAAGCTTCAAATGAAACCAATAGTTCTCCT-GGAACCGAGAATGCATCTCAAGC-AGATACAGAAGAC-CTTGACCTGTCAAAGGAGGACCTGACAAAGCTAGTTCTGGAGAAAGAAGAA-TTGTTGAAATCTAAGGATGAAGAAGTTAAAGACATGAAGGATAAAGTTTTGCGCAGCTATGCAGAGATGGAGAACGTCATTGCGAGAACAAAGCGTGAATCAGATAATGCAAAGAAGTATGCAGTACAGGGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTATCTAGGGCATCATCTGTTGTAAAGGAGAGCTTCTCAAAGATAGATACATCTAATGAATCTGCTGAAGCA-GTGAAGCTACTAAACACCCTATTAGAGGGTGTTGAGATGACCGAAAAGCAACTTGGGGAGGTCTTCAAGAAGTTTGGAGTGGAAAAGTTTGATCCA-CTTAATGAGAAATTTGATCCAAATAAGCATGCTGCGCTTTTCCAAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCGGCTGTTGTGAAGGTGGGCTACATGCTACATGATCGTGTTCTCCGTCCTGCGGAAGTTGGTGTCACTGAAGGTGGTCCAATTGAAGAGGAG-CCGGAGGAGAAATCTGACAAGTCAGATTAAGTTAGATATCGACTTGTCCTTCAGGGATTTTTCTAGGCAGCCAGACAAGTGCTTCGCACTTGCATGAAAACA-TTACGGTTCTTTGGAACTTCGAAGGGCATGGCAGACACAGTTTTGCACTAATGTATCAACCGATCAACAATTTTCCCGTTTTAGTTGGATAAGCCGATCCATAGGTTACTTGTTT-CAAGGATATTTGTAATACGAAA-TGCCATTTTGCTGTGATGAGCGTCTTCTTTTTACCTTTCTGTTTGATATAATTTAGTGCAGACTCCGTCCCTTTCT-ATTGATCCAGGCATATCCAGCCATCACTGTGTAATAAAAAAAAAGCCATGTCCATGTGTACGCCTGAAA---------TGGCAATTTGTAGTCAAATTTCTCTCTCCAAAAAAA]
[+] EMBL AK059052 [GCCTCCGATTTTCTTCTCTTCTCTTCTTCTTCTTCTTTCCCTTCTCTTCTCCGCCGCCGACGACCGAATAAGGAGAGTAGAGGAGAGAGAGAGAGAGACAGAGAGATGGCTGCGGCGGCGCGTCTCCTCGCGCGTATCTCGAGGCAGGGCGTGGCCTCGGCCGCGGCGGCGAGGCGGCAGGCGGAAGCGGCGGCGCTGCTCGGCGCTTCGGCGGGGCGGCACTTGGCCCCGCCCTGCTCTTCGATCAAGGCCTTGCCTCTGCTGAATCAGCCGAGGCTGTACTCAACTTCAACCTTTCAAAGGTTTGGGTTTTCATCTTCTGCTCCCCAGCAAGATGATAAGGCAGCAAATAAACAGAC AGAGGATGGAGTTAATAAAAGCACTCAATCTGAAGCTTCAAATGAAACCAATAGTTCTCCT GGAACCGAGAATGCATCTCAAGC AGATACAGAAGAC CTTGACCTGTCAAAGGAGGACCTGACAAAGCTAGTTCTGGAGAAAGAAGAA TTGTTGAAATCTAAGGATGAAGAAGTTAAAGACATGAAGGATAAAGTTTTGCGCAGCTATGCAGAGATGGAGAACGTCATTGCGAGAACAAAGCGTGAATCAGATAATGCAAAGAAGTATGCAGTACAGGGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTATCTAGGGCATCATCTGTTGTAAAGGAGAGCTTCTCAAAGATAGATACATCTAATGAATCTGCTGAAGCA GTGAAGCTACTAAACACCCTATTAGAGGGTGTTGAGATGACCGAAAAGCAACTTGGGGAGGTCTTCAAGAAGTTTGGAGTGGAAAAGTTTGATCCA CTTAATGAGAAATTTGATCCAAATAAGCATGCTGCGCTTTTCCAAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCGGCTGTTGTGAAGGTGGGCTACATGCTACATGATCGTGTTCTCCGTCCTGCGGAAGTTGGTGTCACTGAAGGTGGTCCAATTGAAGAGGAG CCGGAGGAGAAATCTGACAAGTCAGATTAAGTTAGATATCGACTTGTCCTTCAGGGATTTTTCTAGGCAGCCAGACAAGTGCTTCGCACTTGCATGAAAACA TTACGGTTCTTTGGAACTTCGAAGGGCATGGCAGACACAGTTTTGCACTAATGTATCAACCGATCAACAATTTTCCCGTTTTAGTTGGATAAGCCGATCCATAGGTTACTTGTTT CAAGGATATTTGTAATACGAAA TGCCATTTTGCTGTGATGAGCGTCTTCTTTTTACCTTTCTGTTTGATATAATTTAGTGCAGACTCCGTCCCTTTCT ATTGATCCAGGCATATCCAGCCATCACTGTGTAATAAAAAAAAAGCCATGTCCATGTGTACGCCTGAAA TGGCAATTTGTAGTCAAATTTCTCTCTCC ]
[+] EMBL AK099022 [ TTTTCTTCTCTTCTCTTCTTCTTCTTCTTTCCCTTCTCTTCTCCGCCGCCGACGACCGAATAAGGAGAGTAGAGGAGAGAGAGAGAGAGACAGAGAGATGGCTGCGGCGGCGCGTCTCCTCGCGCGTATCTCGAGGCAGGGCGTGGCCTCGGCCGCGGCGGCGAGGCGGCAGGCGGAAGCGGCGGCGCTGCTCGGCGCTTCGGCGGGGCGGCACTTGGCCCCGCCCTGCTCTTCGATCAAGGCCTTGCCTCTGCTGAATCAGCCGAGGCTGTACTCAACTTCAACCTTTCAAAGGTTTGGGTTTTCATCTTCTGCTCCCCAGCAAGATGATAAGGCAGCAAATAAACAGAC AGAGGATGGAGTTAATAAAAGCACTCAATCTGAAGCTTCAAATGAAACCAATAGTTCTCCT GGAACCGAGAATGCATCTCAAGC AGATACAGAAGAC CTTGACCTGTCAAAGGAGGACCTGACAAAGCTAGTTCTGGAGAAAGAAGAA TTGTTGAAATCTAAGGATGAAGAAGTTAAAGACATGAAGGATAAAGTTTTGCGCAGCTATGCAGAGATGGAGAACGTCATTGCGAGAACAAAGCGTGAATCAGATAATGCAAAGAAGTATGCAGTACAGGGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTATCTAGGGCATCATCTGTTGTAAAGGAGAGCTTCTCAAAGATAGATACATCTAATGAATCTGCTGAAGCA GTGAAGCTACTAAACACCCTATTAGAGGGTGTTGAGATGACCGAAAAGCAACTTGGGGAGGTCTTCAAGAAGTTTGGAGTGGAAAAGTTTGATCCA CTTAATGAGAAATTTGATCCAAATAAGCATGCTGCGCTTTTCCAAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCGGCTGTTGTGAAGGTGGGCTACATGCTACATGATCGTGTTCTCCGTCCTGCGGAAGTTGGTGTCACTGAAGGTGGTCCAATTGAAGAGGAG CCGGAGGAGAAATCTGACAAGTCAGATTAAGTTAGATATCGACTTGTCCTTCAGGGATTTTTCTAGGCAGCCAGACAAGTGCTTCGCACTTGCATGAAAACA TTACGGTTCTTTGGAACTTCGAAGGGCATGGCAGACACAGTTTTGCACTAATGTATCAACCGATCAACAATTTTCCCGTTTTAGTTGGATAAGCCGATCCATAGGTTACTTGTTT CAAGGATATTTGTAATACGAAA TGCCATTTTGCTGTGATGAGCGTCTTCTTTTTACCTTTCTGTTTGATATAATTTAGTGCAGACTCCGTCCCTTTCT ATTGATCCAGGCATATCCAGCCATCACTGTGTAATAAAAAAAAAGCCATGTCCATGTGTACGCCTGAAA TGGCAATTTGTAGTCAAA ]
[+] EMBL C72088 [ TCTTCTTCTTCTTCTTTCCCTTCTCTTCTCCGCCGCCGACGACCGAATAAGGAGAGTAGAGGAGAGAGAGAGAGAGACAGAGAGATGGCTGCGGCGGCGCGTCTCCTCGCGCGTATCTCGAGGCAGGGCGTGGCCTCGGCCGCGGCGGCGAGGCGGCAGGCGGAAGCGGCGGCGCTGCTCGGCGCTTCGGCGGGGCGGCACTTGGCCCCGCCCTGCTCTTCGATCAAGGCCTTGCCTCTGCTGAATCAGCCGAGGCTGTACTCAACTTCAACCTTTCAAAGGTTTGGNTTTTCATCTTCTGCTCCCCAGCAAGATGATAAGGCAGCAAATAAACAGACAAGAGGATGGAGTTAATAAAAGCACTCAATCTGAAGCTTCAAATGAAACCAATAGTTCTCCTNGGACCCGAGAATGCAT TTAAGCAAGGTTCAAAAGAt tttt ]
[+] EMBL D42318 [ nnAGAC AGAGGATGGAGTTAATAAAANCACTNAATCTGAANCTTCAAATGAAACCAATAGTTCTCCT GGAACCGAGAATGCATCTCAAGC AGATACAGAAGACNCTTGACCTGTCAAAGGAGGACCTGACAAAGCTAGTTCTGGAGAAAGAAGAACTTGTTGAAATCTAAGGATGAAGAAGTTAAAG NATGAAGGATAAANTTTTNNNCACGTATGCAGAGATGGAGAACGTCATTGCGAGAAC AAGCGTGAATCAGATAATGC AAG AGTATGC ]
[+] EMBL CA998020 [ TCCT GGAACCGAGAATGCATCTCAAGC AGATACAGAAGAC CTTGACCTGTCAAAGGAGGACCTGACAAAGCTAGTTCTGGAGAAAGAAGAA TTGTTGAAATCTAAGGATGAAGAAGTTAAAGACATGAAGGATAAAGTTTTGCGCAGCTATGCAGAGATGGAGAACGTCATTGCGAGAACAAAGCGTGAATCAGATAATGCAAAGAAGTATGCAGTACAGGGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTATCTAGGGCATCATCTGTTGTAAAGGAGAGCTTCTCAAAGATAGATACATCTAATGAATCTGCTGAAGCA GTGAAGCTACTAAACACCCTATTAGAGGGTGTTGAGATGACCGAAAAGCAACTTGGGGAGGTCTTCAAGAAGTTTGGAGTGGAAAAGTTTGATCCA CTTAATGAGAAATTTGATCCAAATAAGCATGCTGCGCTTTTCCAAATTCCTGATCCTTCAAAACCATCANGAACTGTTGCGGCTGTTGTGAAGGTGGGCTACATGCTACATGATCGTGTTCTCCGTCCTGCGGAAGT ]
[+] EMBL BP184838 [ AAGC AGATACAGAAGAC CTTGACCTGTCAAAGGAGGACCTGACAAAGCTAGTTCTGGAGAAAGAAGAA TTGTTGAAATCTAAGGATGAAGAAGTTAAAGACATGAAGGATAAAGTTTTGCGCAGCTATGCAGAGATGGAGAACGTCATTGCGAGAACAAAGCGTGAATCAGATAATGCAAAGAAGTATGCAGTACAGGGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTATCTAGGGCATCATCTGTTGTAAAGGAGAGCTTCTCAAAGATAGATACATCTAATGAATCTGCTGAAGCA GTGAAGCTACTAAACACCCTATTAGAGGGTGTTGAGATGACCGAAAAGCAACTTGGGGAGGTCTTCAAGAAGTTTGGAGTGGAAAAGTTTGATCCA CTTAATGAGAAATTTGATCCAAATAAGC ]
[-] EMBL CB661293 [ AGAAGAC CTTGACCTGTCAAAGGAGGACCTGACAAAGCTAGTTCTGGAGAAAGAAGAA TTGTTGAAATCTAAGGATGAAGAAGTTAAAGACATGAAGGATAAAGTTTTGCGCAGCTATGCAGAGATGGAGAACGTCATTGCGAGAACAAAGCGTGAATCAGATAATGCAAAGAAGTATGCAGTACAGGGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTATCTAGGGCATCATCTGTTGTAAAGGAGAGCTTCTCAAAGATAGATACATCTAATGAATCTGCTGAAGCA GTGAAGCTACTAAACACCCTATTAGAGGGTGTTGAGATGACCGAAAAGCAACTTGGGGAGGTCTTCAAGAAGTTTGGAGTGGAAAAGTTTGATCCA CTTAATGAGAAATTTGATCCAAATAAGCATGCTGCGCTTTTCCAAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCGGCTGTTGTGAAGGTGGGCTACATGCTACATGATCGTGTTCTCCGTCCTGCGGAAGTTGGTGTCACTGAAGGTGGTCCAATTGAAGAGGAG CCGGAGGAGAAATCTGACAAGTCAGATTAAGTTAGATATCGACTTGTCCTTCAGGGATTTTTCTAGGCAGCCAGACAAGTGCTTCGCACTTGCATGAAAACA TTACGGTTCTTTGGAACTTCGAAGGGCATGGCAGACACAGTTTTGCACTAATGTATCAACCGATCAACAATTTTCCCGTTTTAGTTGGATAAGCCGATCCATAGGTTACTTGTTT CAAGGATATTTGTAATACGAAA TGCCAT ]
[+] EMBL BM420645 [ CTTCTCAAAGATAGATACATCTAATGAATCT CTGAACCACGTGAAGCTACTAAACACCCTATTAGAGGGTGTTGAGATGACCGAAAAGCAACTTGGGGAGGTCTTCAAGAAGTTTGGAGTGGAAAAGTTTGATCCACCTTAATGAGAAATTTGATCCCAATAAGCATGCTGCGCTTTTCCCAATTCCTGATCCTTC AAACCATCAGGAACTGTTGCGGCTGTTGTGAAGGTGGGCTACATGCTACATGATCGTGTTCTCCGTCCTGCGGAAGTTGGTGTCACTGAAGGTGGTCCCATTGAAGAGGAGCCCGGAGGAGAAATCTGACAAGTCAGATTAAGTTAGATATCGACTTGTCCTTCAGGGATTTTTCTA GCAGCCAGACAAGTGCTTCGCCCTTGCATGAAAACC TTACGGTTCTTTGGAACTTCGAAGGGCAT GCAGACACAGTTTTGCACTAATGTATCAACCGATCAAC ATTTTCCCGTTTTAGTTGGATAA CCGATCCATAGGTTACTTGTTT CAAGGATATTTGTAATACGAAACCCCCCTTTTGCTGTGAaaaaaaaaa ]
[+] EMBL OSC059 [ AGGAACTGTTGCGGCTGTTGTGAAGGTGGGCTACATGCTACATGATCGTGTTCTCCGTCCTGCGGAAGTTGGTGTCACTGAAGGTGGTCCAATTGAAGAGGAG CCGGA GAGAAATCTGACAAGTCAGATTAAGTTAGATATCGACTTGTCCTTCAGGGATTTTTCTAGGCAGCCAGACAAGTGCTTCG NTTGCATGAAAACA TTACGGTTCTTTGGAACTTCGAAGGGCATGGCAGACACAGTTTTGCACTAATGTATCAACCGATCAACAATTTTCCCGTTTTAGTTGGATAAGCCGATCCATAGGTTACTTGTTT CAAGGATATTTGTAATACGAAA TGCCATTTTGCTGTGATGAGCGTCTTCTTTTTACCTTTCTGTTTGATATAATTTAGTGCAGACTCCGTCCCTTTCTAATNGATCCAGGNATATCCAGCC ]
[+] EMBL BI808904 [ TGC GCTGTTGTGAAGGTGGGCTACATGCTACATGATCGTGTTCTCCGTCCT CGGAAGTTGGTGTCACTGAAGGTGGTCCAATTGAAGAGGA CCGGAGGAGAAATCTGACAAGTCAGATTAAGTTAGATATCGACTTGTCCTTCAGGGATTTTTCTAGGCAGCCAGACAAGTGCTTCG GCTTGCATGAAAACA TTACGGTTCTTTGGAACTTCGAAGGGCATGGCAGACACAGTTTTGCACTAATGTATCAACCGATCAACAATTTTCCCGTTTTAGTTGGATAAGCCGATCCATAGGTTACTTGTTT CAAGGATATTTGTAATACGAAA TGCCATTTTGCTGTGATGAGCGTCTTCTTTTTACCTTTCTGTTTGATATAATTTAGTGCAGGCTCCGTCCCTTTCT ATTGATCCAGGCATATCCAGCCATCACTGTGTAATAAAAAAAAAGCCATGTCCATGTGTACGCCTGAAACTTCCCATTTGGC ATTCGTAGTCAAATTTCTCTCAAAAAAAAAA]
[+] EMBL BM038772 [ TACATGCTACATGATCGTGTTCTCCGTCCTGCGGAAGTTGGTGTCACTGAAGGTGGTCCAATTGAAGAGGAG CCGGAGGAGAAATCTGACAAGTCAGATTAAGTTAGATATCGACTTGTCCTTCAGGGATTTTTCTAGGCAGCCAGACAAGTGCTTCGCACTTGCATGAAAACACTTACGGTTCTTTGGAACTTCGAAGGGCATGGCAGACACAGTTTTGCACTAATGTATCAACCGATCAACAATTTTCCCGTTTTAGTTGGATAAGCCGATCCATAGGTTACTTGTTTCCAAGGATATTTGTAATACGAAA TGCCATTTTGCTGTGAaaaaa ]
[+] EMBL AU173293 [ CTGAAGGTGGTCCAATTGAAGAGGAG CCGGAGGAGAAATCTGACAAGTCAGATTAAGTTAGATATCGACTTGTCCTTCAGGGATTTTTNTAGGCAGCCAGACAAGTGCTTCGCACTTGCATGAAAACA TTACGGTTCTTTGGAACTTCGAAGGGCATGGCAGACACAGTTTTGCACTAATGTATCAACCGATCAACAATTTTCCCGTTTTAGTTGGATAAGCCGATCCATAGGTTACTTGTTT CAAGGATATTTGTAATACGAAA TGCCATTTTGCTGTGATGAGCGTCTTCTTTTTACCTTTCTGTTTGATATAATTTAGTGCAGACTCCGTCCCTTTNT ATTGATCCAGGCATATCCAGCCATCACTGTGTAATAAAAAAAAAGCCATGTCCATGTGTACGCCTGAAA TGGCAATTTGTAGTCAAAaa ]
consensusID : consensus_14416#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 799 fasta sequence
[CTTCTCTTCTCCGCCGCCGACGACCGAATAAGGAGAGTAGAGGAGAGAGAGAGAGAGACAGAGAGATGGCTGCGGCGGCGCGTCTCCTCGCGCGTATCTCGAGGCAGGGCGTGGCCTCGGCCGCGGCGGCGAGGCGGCAGGCGGAAGCGGCGGCGCTGCTCGGCGCTTCGGCGGGGCGGCACTTGGCCCCGCCCTGCTCTTCGATCAAGGCCTTGCCTCTGCTGAATCAGCAAGATGATAAGGCAGCAAATAAACAGACAGAGGATGGAGTTAATAAAAGCACTCAATCTGAAGCTTCAAATGAAACCAATAGTTCTCCTGGAACCGAGAATGCATCTCAAGCAGGTTCACAAGATTCTGTGCCCCAATCTAACAGGAGGAGGAGAGGTACTAAACGAACTGCATTTTCTGATTCAGATACAGAAGACCTTGACCTGTCAAAGGAGGACCTGACAAAGCTAGTTCTGGAGAAAGAAGAATTGTTGAAATCTAAGGATGAAGAAGTTAAAGACATGAAGGATAAAGTTTTGCGCAGCTATGCAGAGATGGAGAACGTCATTGCGAGAACAAAGCGTGAATCAGATAATGCAAAGAAGTATGCAGTACAGGGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTATCTAGGGCATCATCTGTTGTAAAGGAGAGCTTCTCAAAGATAGATACATCTAATGAATCTGCTGAAGCAGTGAAGCTACTAAACACCCTATTAGAGGGTGTTGAGATGACCGAAAAGCAACTTGGGGAGGTCTTCAAGAAGTTTGGAGTGGA]
[+] EMBL CB661292 [CTTCTCTTCTCCGCCGCCGACGACCGAATAAGGAGAGTAGAGGAGAGAGAGAGAGAGACAGAGAGATGGCTGCGGCGGCGCGTCTCCTCGCGCGTATCTCGAGGCAGGGCGTGGCCTCGGCCGCGGCGGCGAGGCGGCAGGCGGAAGCGGCGGCGCTGCTCGGCGCTTCGGCGGGGCGGCACTTGGCCCCGCCCTGCTCTTCGATCAAGGCCTTGCCTCTGCTGAATCAGCAAGATGATAAGGCAGCAAATAAACAGACAGAGGATGGAGTTAATAAAAGCACTCAATCTGAAGCTTCAAATGAAACCAATAGTTCTCCTGGAACCGAGAATGCATCTCAAGCAGGTTCACAAGATTCTGTGCCCCAATCTAACAGGAGGAGGAGAGGTACTAAACGAACTGCATTTTCTGATTCAGATACAGAAGACCTTGACCTGTCAAAGGAGGACCTGACAAAGCTAGTTCTGGAGAAAGAAGAATTGTTGAAATCTAAGGATGAAGAAGTTAAAGACATGAAGGATAAAGTTTTGCGCAGCTATGCAGAGATGGAGAACGTCATTGCGAGAACAAAGCGTGAATCAGATAATGCAAAGAAGTATGCAGTACAGGGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTATCTAGGGCATCATCTGTTGTAAAGGAGAGCTTCTCAAAGATAGATACATCTAATGAATCTGCTGAAGCAGTGAAGCTACTAAACACCCTATTAGAGGGTGTTGAGATGACCGAAAAGCAACTTGGGGAGGTCTTCAAGAAGTTTGGAGTGGA]
[+] EMBL AU102092 [ AATCTGAAGCTTCAAATGAAACCAATAGTTCTCCTGGAACCGAGAATGCATCTCAAGCAGGTTCACAAGATTCTGTGCCCCAATCTAACAGGAGGAGGAGAGGTACTAAACGAACTGCATTTTCTGATTCAGATACAGAAGACCTTGACCTGTCAAAGGAGGACCTGACAAAGCTAGTTCTGGAGAAAGAAGAATTGTTGAAATCTAAGGATGAAGAAGTTAAAGACATGAAGGATAAAGTT ]
consensusID : consensus_14416#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 410 fasta sequence
[GAGAGAGAGAGACAGAGAGATGGCTGCGGCGGCGCGTCTCCTCGCGCGTATCTCGAGGCAGGGCGTGGCCTCGGCCGCGGCGGCGAGGCGGCAGGCGGAAGCGGCGGCGCTGCTCGGCGCTTCGGCGGGGCGGCACTTGGCCCCGCCCTGCTCTTCGATCAAGGCCTTGCCTCTGCTGAATCAGCCGAGGCTGTACTCAACTTCAACCTTTCAAAGGTTTGGGTTTTCATCTTCTGCTCCCCAGCAAGATGATAAGGCAGCAAATAAACAGACAGAGGATGGAGTTAATAAAAGCACTCAATCTGAAGCTTCAAATGAAACCAATAGTTCTCCTGGAACCGAGAATGCATCTCAAGCAGGTTCACAAGATTCTGTGCCCCAATCTAACANGAGGAGGAGAGGTACTNAAA]
[+] EMBL C97684 [GAGAGAGAGAGACAGAGAGATGGCTGCGGCGGCGCGTCTCCTCGCGCGTATCTCGAGGCAGGGCGTGGCCTCGGCCGCGGCGGCGAGGCGGCAGGCGGAAGCGGCGGCGCTGCTCGGCGCTTCGGCGGGGCGGCACTTGGCCCCGCCCTGCTCTTCGATCAAGGCCTTGCCTCTGCTGAATCAGCCGAGGCTGTACTCAACTTCAACCTTTCAAAGGTTTGGGTTTTCATCTTCTGCTCCCCAGCAAGATGATAAGGCAGCAAATAAACAGACAGAGGATGGAGTTAATAAAAGCACTCAATCTGAAGCTTCAAATGAAACCAATAGTTCTCCTGGAACCGAGAATGCATCTCAAGCAGGTTCACAAGATTCTGTGCCCCAATCTAACANGAGGAGGAGAGGTACTNAAA]
[+] EMBL OSR20431A [ GAGAGAGACAGAGAGATGGCTGCGGCGGCGCGTCTCCTCGCGCGTATCTCGAGGCAGNGCGTGGCCTCGGCCGCGGCGNCGAGGCGGCAGGCGGAAGCGGCGGCGCTGCTCGGCGCTTCGNCGGGGCGGCACTTGGCCCCGCCCTGNTCTTCGATCAAGGCCTTGCCTCTGCTGAATCAGCCGAGGCTGTACTCAACTTCAACCTTTCAAAGGTTTGGGTTTTCATCTTCTGCTCCCCAGCAAGATGATAAGGC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14416#0 GCCTCCGATTTTCTTCTCTTCTCTTCTTCTTCTTCTTTCCCTTCTCTTCTCCGCCGCCGA 60
consensus_14416#2 ------------------------------------------------------------
consensus_14416#1 ----------------------------------------CTTCTCTTCTCCGCCGCCGA 20
consensus_14416#0 CGACCGAATAAGGAGAGTAGAGGAGAGAGAGAGAGAGACAGAGAGATGGCTGCGGCGGCG 120
consensus_14416#2 --------------------------GAGAGAGAGAGACAGAGAGATGGCTGCGGCGGCG 34
consensus_14416#1 CGACCGAATAAGGAGAGTAGAGGAGAGAGAGAGAGAGACAGAGAGATGGCTGCGGCGGCG 80
**********************************
consensus_14416#0 CGTCTCCTCGCGCGTATCTCGAGGCAGGGCGTGGCCTCGGCCGCGGCGGCGAGGCGGCAG 180
consensus_14416#2 CGTCTCCTCGCGCGTATCTCGAGGCAGGGCGTGGCCTCGGCCGCGGCGGCGAGGCGGCAG 94
consensus_14416#1 CGTCTCCTCGCGCGTATCTCGAGGCAGGGCGTGGCCTCGGCCGCGGCGGCGAGGCGGCAG 140
************************************************************
consensus_14416#0 GCGGAAGCGGCGGCGCTGCTCGGCGCTTCGGCGGGGCGGCACTTGGCCCCGCCCTGCTCT 240
consensus_14416#2 GCGGAAGCGGCGGCGCTGCTCGGCGCTTCGGCGGGGCGGCACTTGGCCCCGCCCTGCTCT 154
consensus_14416#1 GCGGAAGCGGCGGCGCTGCTCGGCGCTTCGGCGGGGCGGCACTTGGCCCCGCCCTGCTCT 200
************************************************************
consensus_14416#0 TCGATCAAGGCCTTGCCTCTGCTGAATCAGCCGAGGCTGTACTCAACTTCAACCTTTCAA 300
consensus_14416#2 TCGATCAAGGCCTTGCCTCTGCTGAATCAGCCGAGGCTGTACTCAACTTCAACCTTTCAA 214
consensus_14416#1 TCGATCAAGGCCTTGCCTCTGCTGAATCAGC----------------------------- 231
*******************************
consensus_14416#0 AGGTTTGGGTTTTCATCTTCTGCTCCCCAGCAAGATGATAAGGCAGCAAATAAACAGACA 360
consensus_14416#2 AGGTTTGGGTTTTCATCTTCTGCTCCCCAGCAAGATGATAAGGCAGCAAATAAACAGACA 274
consensus_14416#1 -------------------------------AAGATGATAAGGCAGCAAATAAACAGACA 260
*****************************
consensus_14416#0 GAGGATGGAGTTAATAAAAGCACTCAATCTGAAGCTTCAAATGAAACCAATAGTTCTCCT 420
consensus_14416#2 GAGGATGGAGTTAATAAAAGCACTCAATCTGAAGCTTCAAATGAAACCAATAGTTCTCCT 334
consensus_14416#1 GAGGATGGAGTTAATAAAAGCACTCAATCTGAAGCTTCAAATGAAACCAATAGTTCTCCT 320
************************************************************
consensus_14416#0 GGAACCGAGAATGCATCTCAAGCAGATACAGAAGACCTTGACCTGTCAAAGGAGGACCTG 480
consensus_14416#2 GGAACCGAGAATGCATCTCAAGCAGGTTCACAAGATTCTG---TGCCCCAATCTAACANG 391
consensus_14416#1 GGAACCGAGAATGCATCTCAAGCAGGTTCACAAGATTCTG---TGCCCCAATCTAACAGG 377
************************* * ** **** ** ** * * ** *
consensus_14416#0 ACAAAGCTAGTTCTGGAGAAAGAAGAATTGTTGAAATCTAAGGATGAAGAAGTTAAAGAC 540
consensus_14416#2 AGGAGGAGAGGTACTNAAA----------------------------------------- 410
consensus_14416#1 AGGAGGAGAGGTACTAAACGAACTGCATTTTCTGATTCAGATACAGAAGACCTTGACCTG 437
* * * ** * *
consensus_14416#0 ATGAAGGATAAAGTTTTGCGCAGCTATGCAGAGATGGAGAACGTCATTGCGAGAACAAAG 600
consensus_14416#2 ------------------------------------------------------------
consensus_14416#1 TCAAAGGAGGACCTGACAAAGCTAGTTCTGGAGAAAGAAGAATTGTTGAAATCTAAGGAT 497
consensus_14416#0 CGTGAATCAGATAATGCAAAGAAGTATGCAGTACAGGGCTTCTCCAAGAGCTTGTTAGAT 660
consensus_14416#2 ------------------------------------------------------------
consensus_14416#1 GAAGAAGTTAAAGACATGAAGGATAAAGTTTTGCGCAGCTATGCAGAGATGGAGAACGTC 557
consensus_14416#0 GTTGCAGACAATTTATCTAGGGCATCATCTGTTGTAAAGGAGAGCTTCTCAAAGATAGAT 720
consensus_14416#2 ------------------------------------------------------------
consensus_14416#1 ATTGCGAGAACAAAGCGTGAATCAGATAATGCAAAGAAGTATGCAGTACAGGGCTTCTCC 617
consensus_14416#0 ACATCTAATGAATCTGCTGAAGCAGTGAAGCTACTAAACACCCTATTAGAGGGTGTTGAG 780
consensus_14416#2 ------------------------------------------------------------
consensus_14416#1 AAGAGCTTGTTAGATGTTGCAGACAATTTATCTAGGGCATCATCTGTTGTAAAGGAGAGC 677
consensus_14416#0 ATGACCGAAAAGCAACTTGGGGAGGTCTTCAAGAAGTTTGGAGTGGAAAAGTTTGATCCA 840
consensus_14416#2 ------------------------------------------------------------
consensus_14416#1 TTCTCAAAGATAGATACATCTAATGAATCTGCTGAAGCAGTGAAGCTACTAAACACCCTA 737
consensus_14416#0 CTTAATGAGAAATTTGATCCAAATAAGCATGCTGCGCTTTTCCAAATTCCTGATCCTTCA 900
consensus_14416#2 ------------------------------------------------------------
consensus_14416#1 TTAGAGGGTGTTGAGATGACCGAAAAGCAACTTGGGGAGGTCTTCAAGAAGTTTGGAGTG 797
consensus_14416#0 AAACCATCAGGAACTGTTGCGGCTGTTGTGAAGGTGGGCTACATGCTACATGATCGTGTT 960
consensus_14416#2 ------------------------------------------------------------
consensus_14416#1 GA---------------------------------------------------------- 799
consensus_14416#0 CTCCGTCCTGCGGAAGTTGGTGTCACTGAAGGTGGTCCAATTGAAGAGGAGCCGGAGGAG 1020
consensus_14416#2 ------------------------------------------------------------
consensus_14416#1 ------------------------------------------------------------
consensus_14416#0 AAATCTGACAAGTCAGATTAAGTTAGATATCGACTTGTCCTTCAGGGATTTTTCTAGGCA 1080
consensus_14416#2 ------------------------------------------------------------
consensus_14416#1 ------------------------------------------------------------
consensus_14416#0 GCCAGACAAGTGCTTCGCACTTGCATGAAAACATTACGGTTCTTTGGAACTTCGAAGGGC 1140
consensus_14416#2 ------------------------------------------------------------
consensus_14416#1 ------------------------------------------------------------
consensus_14416#0 ATGGCAGACACAGTTTTGCACTAATGTATCAACCGATCAACAATTTTCCCGTTTTAGTTG 1200
consensus_14416#2 ------------------------------------------------------------
consensus_14416#1 ------------------------------------------------------------
consensus_14416#0 GATAAGCCGATCCATAGGTTACTTGTTTCAAGGATATTTGTAATACGAAATGCCATTTTG 1260
consensus_14416#2 ------------------------------------------------------------
consensus_14416#1 ------------------------------------------------------------
consensus_14416#0 CTGTGATGAGCGTCTTCTTTTTACCTTTCTGTTTGATATAATTTAGTGCAGACTCCGTCC 1320
consensus_14416#2 ------------------------------------------------------------
consensus_14416#1 ------------------------------------------------------------
consensus_14416#0 CTTTCTATTGATCCAGGCATATCCAGCCATCACTGTGTAATAAAAAAAAAGCCATGTCCA 1380
consensus_14416#2 ------------------------------------------------------------
consensus_14416#1 ------------------------------------------------------------
consensus_14416#0 TGTGTACGCCTGAAATGGCAATTTGTAGTCAAATTTCTCTCTCCAAAAAAA 1431
consensus_14416#2 ---------------------------------------------------
consensus_14416#1 ---------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||