These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14437#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1442 fasta sequence [CTGCGCCGCCTCCCTCGTCTCGTCTCGTTCCTCCCTCTCCGGCGGCCGGATCGGCGAACCCCCTCCCGCCGCCGCACGCGCGCGCGCTCCCCGGCTTCGCCGCCGAGCAGAGGGGTAGCGGAGGCTAGGGCTCCCTTCCGGGAACTTAACTTCCAACTTCAAGATGTTCCCCCCAGGCAACAATTCTTTGGCTCTTTCAGCCCCAAGGCCAGGAATGGAGCTGGCTAACATTCAACAGCATCCTAATCAAGCTCTTGGGCCTGGTGGGAAGCAACGTACATCCAGTCTGGAGGCCCCAATAATGCTACTCACAGGCCATCAGAGCGCTGTGTACTGTATGAAGTTCAACCCTGCAGGAACTGTGATAGCATCAGGCTCCCATGACAAGGATATCTTC-TTGTGGTATGTCCATGGTGACTGTAAGAACTACATGGTACTGAGAGGGCACAAGAATGCTGTTCTTGACCTTCAATGGACTACTGATGGGACTCAGATCATCTCTGCAAGCCCTGACAAGACTGTGAGAGTGTGGGACGTTGAGACTGGCAAGCAAGTCAAGAAGATGGCCGAGCACTCATCTTTTGTCAACTCATGTTGCCCGGCTCGAAAGTGGCCACCTCTGGTTGTAAGTGGATCGGATGATGGAACAGCAAAGCTGTGGGATTTGCGTCAAAGAGGTGCTATACAAACACTTCCCGACAAGTACCAGATTACAGCCGTCAGCTTCTCAGAGGCGGCAGATAAGGTTTTCACTGGTGGCCTAGACAATG-ATGTC-AAATGGTGGGATCTCCGTAAGAATGAAGTGACAGAGTATCTCAAAGGACACCAGGACATGATAACCGGAATGCAGCTTAGTCCAGATGGGTCTTATCTCCTAACCAATGCAATGGACAATGAGCTCAAAATCTGGGACTTGC-GCCCTTACGCCCCAGAGAACCGGAACATCAAGACCCTCACAGGACACCAGCATAACTTTGAGAAGAACCTGTTGAAGTGCAGC-TGGTCCCCTGATAATCGCAAGGTCAC-TGCCGGGAGTGCTGATCGCATGGTCTACATC-TGGGACACAACATCAAGGCGGATCTTGTACAAGCTTCCTGGCCACAACGGTTCTGTCAACGAGACCGCATTCCATCCCACCGAGCCTGTCATTGGATCTTGCGGCAGTGACAAGCAGATTTATCTTGGGGAGCTTTAAGGGTACTACCATCACATTTTCATCTAGAAGCTATTGTACTATCTTGTTATGAAGGCAAACAGAAACTACCATCCTTGCAATGTTTCTTCATCTGAAAAATTCTAATGCACGATTGACTGACCAGAATCTCCTTTGTAGATTGTATTGAGGCCAGTGGGTCTTTTCAAACTTCTCCATGTTCTGTGCCTTCATCATTCATGTTAT-CCTACCTGTGACTATTCTGCCGAAAAAAAAAAAAAAAAAAAGG] [+] EMBL AK103633 [CTGCGCCGCCTCCCTCGTCTCGTCTCGTTCCTCCCTCTCCGGCGGCCGGATCGGCGAACCCCCTCCCGCCGCCGCACGCGCGCGCGCTCCCCGGCTTCGCCGCCGAGCAGAGGGGTAGCGGAGGCTAGGGCTCCCTTCCGGGAACTTAACTTCCAACTTCAAGATGTTCCCCCCAGGCAACAATTCTTTGGCTCTTTCAGCCCCAAGGCCAGGAATGGAGCTGGCTAACATTCAACAGCATCCTAATCAAGCTCTTGGGCCTGGTGGGAAGCAACGTACATCCAGTCTGGAGGCCCCAATAATGCTACTCACAGGCCATCAGAGCGCTGTGTACTGTATGAAGTTCAACCCTGCAGGAACTGTGATAGCATCAGGCTCCCATGACAAGGATATCTTC TTGTGGTATGTCCATGGTGACTGTAAGAACTACATGGTACTGAGAGGGCACAAGAATGCTGTTCTTGACCTTCAATGGACTACTGATGGGACTCAGATCATCTCTGCAAGCCCTGACAAGACTGTGAGAGTGTGGGACGTTGAGACTGGCAAGCAAGTCAAGAAGATGGCCGAGCACTCATCTTTTGTCAACTCATGTTGCCCGGCTCGAAAGTGGCCACCTCTGGTTGTAAGTGGATCGGATGATGGAACAGCAAAGCTGTGGGATTTGCGTCAAAGAGGTGCTATACAAACACTTCCCGACAAGTACCAGATTACAGCCGTCAGCTTCTCAGAGGCGGCAGATAAGGTTTTCACTGGTGGCCTAGACAATG ATGTC AAATGGTGGGATCTCCGTAAGAATGAAGTGACAGAGTATCTCAAAGGACACCAGGACATGATAACCGGAATGCAGCTTAGTCCAGATGGGTCTTATCTCCTAACCAATGCAATGGACAATGAGCTCAAAATCTGGGACTTGC GCCCTTACGCCCCAGAGAACCGGAACATCAAGACCCTCACAGGACACCAGCATAACTTTGAGAAGAACCTGTTGAAGTGCAGC TGGTCCCCTGATAATCGCAAGGTCAC TGCCGGGAGTGCTGATCGCATGGTCTACATC TGGGACACAACATCAAGGCGGATCTTGTACAAGCTTCCTGGCCACAACGGTTCTGTCAACGAGACCGCATTCCATCCCACCGAGCCTGTCATTGGATCTTGCGGCAGTGACAAGCAGATTTATCTTGGGGAGCTTTAAGGGTACTACCATCACATTTTCATCTAGAAGCTATTGTACTATCTTGTTATGAAGGCAAACAGAAACTACCATCCTTGCAATGTTTCTTCATCTGAAAAATTCTAATGCACGA ] [+] EMBL AK111971 [ CCGCCTCCCTCGTCTCGTCTCGTTCCTCCCTCTCCGGCGGCCGGATCGGCGAACCCCCTCCCGCCGCCGCACGCGCGCGCGCTCCCCGGCTTCGCCGCCGAGCAGAGGGGTAGCGGAGGCTAGGGCTCCCTTCCGGGAACTTAACTTCCAACTTCAAGATGTTCCCCCCAGGCAACAATTCTTTGGCTCTTTCAGCCCCAAGGCCAGGAATGGAGCTGGCTAACATTCAACAGCATCCTAATCAAGCTCTTGGGCCTGGTGGGAAGCAACGTACATCCAGTCTGGAGGCCCCAATAATGCTACTCACAGGCCATCAGAGCGCTGTGTACTGTATGAAGTTCAACCCTGCAGGAACTGTGATAGCATCAGGCTCCCATGACAAGGATATCTTC TTGTGGTATGTCCATGGTGACTGTAAGAACTACATGGTACTGAGAGGGCACAAGAATGCTGTTCTTGACCTTCAATGGACTACTGATGGGACTCAGATCATCTCTGCAAGCCCTGACAAGACTGTGAGAGTGTGGGACGTTGAGACTGGCAAGCAAGTCAAGAAGATGGCCGAGCACTCATCTTTTGTCAACTCATGTTGCCCGGCTCGAAAGTGGCCACCTCTGGTTGTAAGTGGATCGGATGATGGAACAGCAAAGCTGTGGGATTTGCGTCAAAGAGGTGCTATACAAACACTTCCCGACAAGTACCAGATTACAGCCGTCAGCTTCTCAGAGGCGGCAGATAAGGTTTTCACTGGTGGCCTAGACAATG ATGTC AAATGGTGGGATCTCCGTAAGAATGAAGTGACAGAGTATCTCAAAGGACACCAGGACATGATAACCGGAATGCAGCTTAGTCCAGATGGGTCTTATCTCCTAACCAATGCAATGGACAATGAGCTCAAAATCTGGGACTTGC GCCCTTACGCCCCAGAGAACCGGAACATCAAGACCCTCACAGGACACCAGCATAACTTTGAGAAGAACCTGTTGAAGTGCAGC TGGTCCCCTGATAATCGCAAGGTCAC TGCCGGGAGTGCTGATCGCATGGTCTACATC TGGGACACAACATCAAGGCGGATCTTGTACAAGCTTCCTGGCCACAACGGTTCTGTCAACGAGACCGCATTCCATCCCACCGAGCCTGTCATTGGATCTTGCGGCAGTGACAAGCAGATTTATCTTGGGGAGCTTTAAGGGTACTACCATCACATTTTCATCTAGAAGCTATTGTACTATCTTGTTATGAAGGCAAACAGAAACTACCATCCTTGCAATGTTTCTTCATCTGAAAAATTCTAATGCACGATTGACTGACCAGAATCTCCTTTGTAGATTGTATTGAGGCCAGTGGGTCTTTTCAAACTTCTCCATGTTCTGTGCCTTCATCATTCATGTTAT CCTACCTGTGA ] [+] EMBL C91854 [ CCTCGTCTCGTCTCGTTCCTCCCTCTCCGGCGGCCGGATCGGCGAACCCCCTCCCGCCGCCGCACGCGCGCGCGCTCCCCGGCTTCGCCGCCGAGCAGAGGGGTAGCGGAGGCTAGGGCTCCCTTCCGGGAACTTAACTTCCAACTTCAAGATGTTCCCCCCAGGCAACAATTCTTTGGCTCTTTCAGCCCCAAGGCCAGGAATGGAGCTGGCTAACATTCAACAGCATCCTAATCAAGCTCTTGGGCCTGGTGGGAAGCAACGTACATCCAGTCTGGAGGCCCCAATAATGCTACTCACAGGCCATCAGAGCGCTGTGTACTGTATGAAGTTCAACCCTGCAGGNACTGTGATAGCATCAGGNT CCATGACAAGGATATCTTCTTTGTGGTATGTCCATGGTGACTGTAng ] [+] EMBL CB667122 [ TCTCGTCCCTCCCTCTCCGGCGGCCGGATCGGCGAACCCCCTCCCGCCGCCGCACGCGCGCGCGCTCCCCGGCTTCGCCGCCGAGCAGAGGGGTAGCGGAGGCTAGGGCTCCCTTCCGGGAACTTAACTTCCAACTTCAAGATGTTCCCCCCAGGCAACAATTCTTTGGCTCTTTCAGCCCCAAGGCCAGGAATGGAGCTGGCTAACATTCAACAGCATCCTAATCAAGCTCTTGGGCCTGGTGGGAAGCAACGTACATCCAGTCTGGAGGCCCCAATAATGCTACTCACAGGCCATCAGAGCGCTGTGTACTGTATGAAGTTCAACCCTGCAGGAACTGTGATAGCATCAGGCTCCCATGACAAGGATATCTTC TTGTGGTATGTCCATGGTGACTGTAAGAACTACATGGTACTGAGAGGGCACAAGAATGCTGTTCTTGACCTTCAATGGACTACTGATGGGACTCAGATCATCTCTGCAAGCCCTGACAAGACTGTGAGAGTGTGGGACGTTGAGACTGGCAAGCAAGTCAAGAAGATGGCCGAGCACTCATCTTTTGTCAACTCATGTTGCCCGGCTCGAAAGTGGCCACCTCTGGTTGTAAGTGGATCGGATGATGGAACAGCAAAGCTGTGGGATTTGCGTCAAAGAGGTGCTATACAAACACTTCCCGACAAGTACCAGATTATAGCCGTCAGCTTCTCAGAGGCGGCAGATAAGGTTTTCACTGGTGGCCTAGACAATG ATGTC AAATGGTGGGATCTCCGTAAGAATGAAGTGACAGAGTATCTCAAAGGACACC ] [+] EMBL CA753707 [ TCCCTCTCCGGCGGCCGGATCGGCGAACCCCCTCCCGCCGCCGCACGCGCGCGCGCTCCCCGGCTTCGCCGCCGAGCAGAGGGGTAGCGGAGGCTAGGGCTCCCTTCCGGGAACTTAACTTCCAACTTCAAGATGTTCCCCCCAGGCAACAATTCTTTGGCTCTTTCAGCCCCAAGGCCAGGAATGGAGCTGGCTAACATTCAACAGCATCCTAATCAAGCTCTTGGGCCTGGTGGGAAGCAACGTACATCCAGTCTGGAGGCCCCAATAATGCTACTCACAGGCCATCAGAGCGCTGTGTACTGTATGAAGTTCAACCCTGCAGGAACTGTGATAGCATCAGGCTCCCATGACAAGGATATCTTC TTGTGGTATGTCCATGGTGACTGTAAGAACTACATGGTACTGAGAGGGCACAAGAATGCTGTTCTTGACCTTCAATGGACTACTGATGGGACTCAGATCATCTCTGCAAGCCCTGACCAGACTGTGAGAGTGTGGGACGTNGAGACTGGCAAGCAAGTCAAGAAGATGGCCGAGCACTCATCTTTTGTCAACTCATGTTGCCCGGCTCGAAAGTGGCCACCTCTGGTTGTGAGTGGATCGGATGATGGAACAGCAAAGCTGTGGGATTTGCGTCAAAGAGGTGCTATACAAACACTTCCCGACAAGTACCAGATTACAGCCGTCAGCTTCTCAGAGGCGGCAGATAAGGTTTTCACTGGTGGCCTAGACAATG ATGTC AAATGGTGGGATCTCCGTAAGAATGAAGTGACAGAGTATCTCAAAGGA ] [+] EMBL CB673889 [ CGGCGGCCGGATCGGCGAAACCCCTCCCGCCGCCGCAGGCGCGCGCGCTCCCCGGCTTCCCCGCCGAGCAGAGGGGTAGCGGAGGCTAGGGCTCCCTTCCGGGAACTTAACTTCCAACTTCCAGATGTTCCCCCCAGGCAACAATTCTTTGGCTCTTTCAGCCCCAAGGGCAGGAATGGAGCTGGCTAACATTCAACAGCATCCTAGTCAAGCTCTTGGGCCTGGTGGGAAGCAACGTACATCCAGTCTGGAGGCCCCAATAATGCTACTCACAGGCCATCAGAGCGCTGTGTACTGTATGAAGCTCAACCCTGCAGGAACTGTGATAGCATCAGGCTCCCATGACAAGGATATCTTC TTGAGGTATGTCCATGGTGACTGTAAGAGCTACATGGTACTGAGAGGGCACAAGAATGCTGTTCTTGACCTTCAGTGGACTACTGATGGGACTCAGATCATCTCTGCAAGCCCTGACAAGACTGTGAGAGTGTGGGACGCTGAGACTGGCAAGCAAGTCAAGAAGATGGCCGAGCACTCATCTTTTGTCAACTCATGTTGCCCGGCTCGAAAGTGGCCACCTCTGGCTGTAAGTGGATCGGATGATGGAACAGCAAAGCTGTGGGATTTGCGTCAAAGAGGTGCTAT ] [-] EMBL CB667123 [ TGATGGAACAGCAAAGCTGTGGGATTTGCGTCAAAGAGGTGCTATACAAACACTTCCCGACAAGTACCAGATTATAGCCGTCAGCTTCTCAGAGGCGGCAGATAAGGTTTTCACTGGTGGCCTAGACAATG ATGTC AAATGGTGGGATCTCCGTAAGAATGAAGTGACAGAGTATCTCAAAGGACCCCAGGACATGATAACCGGAATGCAGCTTAGTCCAGATGGGTCTTATCTCCTAACCAATGCAATGGACAATGAGCTCAAAATTTGGGACTTGC GCCCTTACGCCCCAGAGAACCGGAACATCAAGACCCTCCCAGGACACCAGCATAACTTTGAGAAGAACCTGTTGAAGTGCAGC TGGTCCCCTGATAATCGCAAGGTCAC TGCCGGGAGTGCTGATCGCATGGTTTACATT TGGGACACAACATCAAGGCGGATTTTGTACAAGCTTCCTGGCCACAACGGTTTTGTCAACGAGACCGCATTCCATCCCACCGAGCCTGTCATTGGATCTTGCGGCAGTGACAAGCAGATTTATTTTGGGGAGCTTTAAGGGTACTACCATCACATTTTCATTTAGAAGCTATTGTACTATCTTGTTATGAAGGCAAACAGAAACTACCATCCTTGCAATGTTTTTTCATCTGAAAAATTTTAATGCCCGATTGACTGACCAGAATCTCCTTTGTAGATTGTATTGAGGCCAGTGGGTCTTTTCAAACTTCTCCATGTTCTGTGCCTTCATCATTCATGTTATGGCTACCTGTGACTATTCTGCCGAAAAAAAAAAAAAAAAAAAGG] [+] EMBL C27891 [ ACCAGATTACAGCCGTCAGCTTCTCAGAGGCGGCAGATAAGGTTTTCACTGGTGGCCTAGACAATG ATGTC AAATGGTGGGATCTCCGTAAGAATGAAGTGACAGAGTATCTCAAAGGACACCAGGACATGATAACCGGAATGCAGCTTAGTCCAGATGGGTCTTATCTCCTAACCAATGCAATGGACAATGAGCTCAAAATCTGGGACTTGC GCCCTTACGCCCCAGAGAACCGGAACATCAAGACCCTCACAGGACACCAGCATAACTTTGAGAAGAACCTGTTGAAGTGCAGCTTGGTCCCCTGATAATCGCAAGGTCACTTNCCGGGAGTGCTGATCGCATGGTCTACATCTTGGGACACAACATCAAGGCGGATCTTGTTCAAGCTTCCTGGGCACAACGGTTCTTTTAACGAGA ] [-] EMBL CB673890 [ CCAGATTACAGCCGTCAGCTTCTCAGAGGCGGCAGATAAGGTTTTCACTGGTGGCCTAGACAATGAATGTC AAATGGTGGGATCTCCGTAAGAATGAAGTGACAGAGTATCTCAAAGGACACCAGGACATGATAACCGGAATGCAGCTTAGTCCAGATGGGTCTTATCTCCTAACCAATGCAATGGACAATGAGCTCAAAATCTGGGACTTGC GCCCTTACGCCCCAGAGAACCGGAACATCAAGACCCTCACAGGACACCAGCATAACTTTGAGAAGAACCTGTTGAAGTGCAGC TGGTCCCCTGATAATCGCAAGGTCAC TGCCGGGAGTGCTGATCGCATGGTCTACATC TGGGACACAACATCAAGGCGGATCTTGTACAAGCTTCCTGGCCACAACGGTTCTGTCAACGAGACCGCATTCCATCCCACCGAGCCTGTCATTGGATCTTGCGGCAGTGACAAGCAGATTTATCTTGGGGAGCTTTAAGGGTAGTACCATCACATTTTCATCTAGAAGCTATTGTACTATCTTGTTATGAAGGCAGGCAGAAACTACCATCCTTGCAATGTTTCTTCATCTGAAAAATTCTA ] [+] EMBL AU100896 [ ATGTCAAAATGGTGGGATCTCNGTAAGAATGAAGTGNCAGAGTATCTCAAAGGACACCAGGACATGATACCCGGAATGCAGTTTAGTCCAGATGGGTCTTATCTCCTAACCAATGCAATGG CAATGAGCTCAAAATCTGGGACTTGCGGCCCTTACGCCCCAGAGAACCGGAACATCAAGACCCTCACAGGACACCAGCATAACTTTGAGAAGAACCTGTTGAAGTGCAGC TGGTCCCCTGATAATCGCAAGGTCAC TGCCGGGAGTGCTGATCGCATGGTCTACATC TGGGACACAACATCAAGGCGGATCTTGTACAAGCTTCCTGGCCACAACGGTTCTGTCAACGAGACCGCATTCCATCCCACCGAGCCTGTCATTGGATCTTGCGGCAGTGACAAGCAGATTTATCTTGGGGAGCTTTAAGGGTACTACCATCACATTTTCATCTAGAAGCTATTGTACTATCTTGTTATGAAGGCAAACAGAAACTACCATCCTTGCAATGTTTCTTCATCTGAAAAATTCTAATGCACGATTGACTGACCAGAATCTCCTTTGTAGATTGTATTGAGGCCAGTGGGTCTTTTCAAAaa ] consensusID : consensus_14437#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 801 fasta sequence [CGTCTCGTCTCGTTCCTCCCTCTCCGGCGGCCGGATCGGCGAACCCCCTCCCGCCGCCGCACGCGCGCGCGCTCCCCGGCTTCGCCGCCGAGCAGAGGGGTAGCGGAGGCTANGGCTCCCTTCCGGGAACTTAACTTCCAACTTCAAGATGTTCCCCCCAGGCAACAATTCTTTGGCTCTNTCAGCCCCAAGGCCAGGAATGGAGCTGGCTAACATTCAACAGCATCCTAATCAAGCTCTTGGGCCTGGTGGGAAGCAACGTACATCCAGTCTGGAGGCCCCAATAATGCTACTCACAGGCCATCAGAGCGCTGTGTACTGTATGAAGTTCAACCCTGCAGGAACTGTGATAGCATCAGGCTCCCATGACAAGGATATCTTCTTGTGGATGTCCATGGTGACTGTAAGAACTACATGGTACTGAGAGGGCACANGAAATGCTGTCTTGACCTTCAATGGACTACTGATGGGACTAGATCATCTCTGCAAGCCCTGACAGACTGTGACAAGGGTGGAGTGAGACTGCAAGCAAGTCAGAGATGCCGACACTCATCTTTGCAACTATGTGCCCGCTTCGAAGGGCCCTCTGGTTGAAGGACGATATGAACACCACTGGGAATGCGCCAAAGTGCTTCAACCTTCCACAGTACCAATCAGCGTACTTTCAAGCGCAATAGTTACTGTGCCTACAGATCATGGGATCCGAGAAAATCCATTTTAAGACCGGATGATACGATGATTTTCATGGTTATTTCATCGGTCNAGTAATAGGATGAATTCTATAGTAATACTCGGCGCATG] [+] EMBL AW154967 [CGTCTCGTCTCGTTCCTCCCTCTCCGGCGGCCGGATCGGCGAACCCCCTCCCGCCGCCGCACGCGCGCGCGCTCCCCGGCTTCGCCGCCGAGCAGAGGGGTAGCGGAGGCTANGGCTCCCTTCCGGGAACTTAACTTCCAACTTCAAGATGTTCCCCCCAGGCAACAATTCTTTGGCTCTNTCAGCCCCAAGGCCAGGAATGGAGCTGGCTAACATTCAACAGCATCCTAATCAAGCTCTTGGGCCTGGTGGGAAGCAACGTACATCCAGTCTGGAGGCCCCAATAATGCTACTCACAGGCCATCAGAGCGCTGTGTACTGTATGAAGTTCAACCCTGCAGGAACTGTGATAGCATCAGGCTCCCATGACAAGGATATCTTCTTGTGGATGTCCATGGTGACTGTAAGAACTACATGGTACTGAGAGGGCACANGAAATGCTGTCTTGACCTTCAATGGACTACTGATGGGACTAGATCATCTCTGCAAGCCCTGACAGACTGTGACAAGGGTGGAGTGAGACTGCAAGCAAGTCAGAGATGCCGACACTCATCTTTGCAACTATGTGCCCGCTTCGAAGGGCCCTCTGGTTGAAGGACGATATGAACACCACTGGGAATGCGCCAAAGTGCTTCAACCTTCCACAGTACCAATCAGCGTACTTTCAAGCGCAATAGTTACTGTGCCTACAGATCATGGGATCCGAGAAAATCCATTTTAAGACCGGATGATACGATGATTTTCATGGTTATTTCATCGGTCNAGTAATAGGATGAATTCTATAGTAATACTCGGCGCATG] consensusID : consensus_14437#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 604 fasta sequence [TCGTGCCGAATTCGGCACGAGCACAGGACACCAGCATAACTTTGAGAAGAACCTGTTGAAGTGCAGCTGGTCCCCTGATAATCGCAAGGTCACTGCCGGGAGTGCTGATCGCATGGTCTACATCTGGGACACAACATCAAGGCGGATCTTGTACAAGCTTCCTGGCCACAACGGTTCTGTCAACGAGACCGCATTCCAT-CCCACCGAGCCTGTCATTGGATCTTGCGGCAGTGACA-AGCAGATTTATCTTGGGGAGCTTTAAGGGTACTACCATCACATTTTCATCTAGAAGCTATTGTACTATCTTGTTATGAAGGCAAACAGAAACTACCATCCTTGCAATGTTTCTTCATCTGAAAAATTCTAATGCACGATTGACTGACCAGAATCTCCTTTGTAGATTGTATTGAGGCCAGTGGGTCTTTTCAAACTTCTCCA-TGTTCTGTGCCTTCATCATTCATGTTATCCTACCTGTGACTATTCTGCCATTCCCTGTCAATCACTGATTGCATGTTTACCTCTCTGAAACCTGCTTGCAATCTGCTGATTTGAGGCAGTGTTTAACAAACATTTTTTTGTTACTGGTGGCGCGGGAGCTTTGCTA] [+] EMBL BE230146 [TCGTGCCGAATTCGGCACGAGCACAGGACACCAGCATAACTTTGAGAAGAACCTGTTGAAGTGCAGCTGGTCCCCTGATAATCGCAAGGTCACTGCCGGGAGTGCTGATCGCATGGTCTACATCTGGGACACAACATCAAGGCGGATCTTGTACAAGCTTCCTGGCCACAACGGTTCTGTCAACGAGACCGCATTCCAT CCCACCGAGCCTGTCATTGGATCTTGCGGCAGTGACA AGCAGATTTATCTTGGGGAGCTTTAAGGGTACTACCATCACATTTTCATCTAGAAGCTATTGTACTATCTTGTTATGAAGGCAAACAGAAACTACCATCCTTGCAATGTTTCTTCATCTGAAAAATTCTAATGCACGATTGACTGACCAGAATCTCCTTTGTAGATTGTATTGAGGCCAGTGGGTCTTTTCAAACTTCTCCA TGTTCTGTGCCTTCATCATTCATGTTATCCTACCTGTGACTATTCTGCCATTCCCTGTCAATCACTGATTGCATGGTTACCTCTCTGAAACCTGCTTGCAATCTGCTGATTTGAGGCAGTGTTTAACAAACATTTTTTTGTTACTGGTGGCGCGGGAGCTTTGCTA] [+] EMBL BE229878 [ CGTGCCGAATTCGGCACGAGCACAGGACACCAGCATAACTTTGAGAAGAACCTGTTGAAGAGCAGCTGGTCCCCTGATAATCGCAAGGTCACTGCCGGGAGTGCTGATCGCATGGTCTACATCTGGGACACAACATCAAGGCGGATCTTGTACAAGCTTCCTGGCCACAACGGTTCTGTCAACGAGACCGCATTCCAT CCCACCGAGCCTGTCATTGGATCTTGCGGCAGTGACA AGCAGATTTATCTTGGGGAGCTTTAAGGGTACTACCATCACATTTTCATCTAGAAGCTATTGTACTATCTTGTTATGAAGGCAAACAGAAACTACCATCCTTGCAATGTTTCTTCATCTGAAAAATTCTAATGCACGATTGACTGACCAGAATCTCCTTTGTAGATTGTATTGAGGCCAGTGGGTCTTTTCAAACTTCTCCA TGTTCTGTGCCTTCATCATTCATGTTATCCTACCTGTGACTATTCTGCCATTCCCTG CAATCACTGATTGCATGTTTACCTCTCTGAAACCTGCTTGCAA ] [+] EMBL BE230424 [ CGTGCCGAATTCGGCACGAGCACAGGACACCAGCATAACTTTGAGAAGAACCTGTTGAAGTGCAGCTGGTCCCCTGATAATCGCAAGGTCACTGCCGGGAGTGCTGATCGCATGGTCTACATCTGGGACACAACATCAAGGCGGATCTTGTACTAGCTTCGTGGCCACA ] [+] EMBL BI811075 [ CGGATCTTGTACAAGCTTTCTGGCCACAGCGGTTCTGTCAACGAGACC CATTCCATGCCCACCGAGCCTGTCATTGGATCTTGCGGCAGTGACACAGCAGATTTATCTTGGGGAGCTTTAAGGGTACTACCATCACAGTTTCATCTAGAAGCTATTGTACTATCTTGTTATGAAGGCCAACAGAAACTACCATCCTTGCCATGTTTCTTCATCTGAAAAATTCTAATGCACGATTGACTGACCAGAATCTCCTTTGTAGATTGTATTGAGGCCCGTGGGTCTTTTCAAACTTCTCCACTGTTCTGTGCCTTCATCATTCATGTTATCCTACCTGTGACTATTCTGCCCTTCCCTGTCCATCACTGATTGCATGTTTACCTCTCTGAAAaaaaaaa ] consensusID : consensus_14437#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 383 fasta sequence [GCAGCTGGACCCCTGATAATCGNAAGGTCACTNCCGGGAGTGCTGATCGCNTGGTCTACATCTGGGACACAACATCAAGGCGGATCTTGTACAAGCTTCCTGGCCACAACGGTTCTNTCAACGAGACCGCATTCCATCCCACCGAGCCTGTCATTGGATCTTGCGGCAGTGACAAGCAGATTTATCTTGGGGAGCTTTAAGGGTACTACCATCACATTTTCATCTAGAAGCTATTGTNCTATCTTGTTATGAAGGCAAACAGAAACTACCATCCTTGCAATGTTTCTTCATCTGNAAAATTCTAATGCACGATTGACTGACCAGAATCTCCTTTGTAGATTGTATTGAGGCCAGTGGGTCTTTTCAAAAAAAAAAAAAAAAAA] [+] EMBL AU166143 [GCAGCTGGACCCCTGATAATCGNAAGGTCACTNCCGGGAGTGCTGATCGCNTGGTCTACATCTGGGACACAACATCAAGGCGGATCTTGTACAAGCTTCCTGGCCACAACGGTTCTNTCAACGAGACCGCATTCCATCCCACCGAGCCTGTCATTGGATCTTGCGGCAGTGACAAGCAGATTTATCTTGGGGAGCTTTAAGGGTACTACCATCACATTTTCATCTAGAAGCTATTGTNCTATCTTGTTATGAAGGCAAACAGAAACTACCATCCTTGCAATGTTTCTTCATCTGNAAAATTCTAATGCACGATTGACTGACCAGAATCTCCTTTGTAGATTGTATTGAGGCCAGTGGGTCTTTTCAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14437#2 ------------------------------------------------------------ consensus_14437#3 ------------------------------------------------------------ consensus_14437#0 CTGCGCCGCCTCCCTCGTCTCGTCTCGTTCCTCCCTCTCCGGCGGCCGGATCGGCGAACC 60 consensus_14437#1 ------------------------------------------------------------ consensus_14437#2 ------------------------------------------------------------ consensus_14437#3 ------------------------------------------------------------ consensus_14437#0 CCCTCCCGCCGCCGCACGCGCGCGCGCTCCCCGGCTTCGCCGCCGAGCAGAGGGGTAGCG 120 consensus_14437#1 ------------------------------------------------------------ consensus_14437#2 ------------------------------------------------------------ consensus_14437#3 ------------------------------------------------------------ consensus_14437#0 GAGGCTAGGGCTCCCTTCCGGGAACTTAACTTCCAACTTCAAGATGTTCCCCCCAGGCAA 180 consensus_14437#1 ------------------------------------------------------------ consensus_14437#2 ------------------------------------------------------------ consensus_14437#3 ------------------------------------------------------------ consensus_14437#0 CAATTCTTTGGCTCTTTCAGCCCCAAGGCCAGGAATGGAGCTGGCTAACATTCAACAGCA 240 consensus_14437#1 ------------------------------------------------------------ consensus_14437#2 ------------------------------------------------------------ consensus_14437#3 ------------------------------------------------------------ consensus_14437#0 TCCTAATCAAGCTCTTGGGCCTGGTGGGAAGCAACGTACATCCAGTCTGGAGGCCCCAAT 300 consensus_14437#1 ------------------------------------------------------------ consensus_14437#2 ------------------------------------------------------------ consensus_14437#3 ------------------------------------------------------------ consensus_14437#0 AATGCTACTCACAGGCCATCAGAGCGCTGTGTACTGTATGAAGTTCAACCCTGCAGGAAC 360 consensus_14437#1 ------------------------------------------------------------ consensus_14437#2 ------------------------------------------------------------ consensus_14437#3 ------------------------------------------------------------ consensus_14437#0 TGTGATAGCATCAGGCTCCCATGACAAGGATATCTTCTTGTGGTATGTCCATGGTGACTG 420 consensus_14437#1 ------------------------------------------------------------ consensus_14437#2 ------------------------------------------------------------ consensus_14437#3 ------------------------------------------------------------ consensus_14437#0 TAAGAACTACATGGTACTGAGAGGGCACAAGAATGCTGTTCTTGACCTTCAATGGACTAC 480 consensus_14437#1 ------------------------------------------------------------ consensus_14437#2 ------------------------------------------------------------ consensus_14437#3 ------------------------------------------------------------ consensus_14437#0 TGATGGGACTCAGATCATCTCTGCAAGCCCTGACAAGACTGTGAGAGTGTGGGACGTTGA 540 consensus_14437#1 ------------------------------------------------------------ consensus_14437#2 ------------------------------------------------------------ consensus_14437#3 ------------------------------------------------------------ consensus_14437#0 GACTGGCAAGCAAGTCAAGAAGATGGCCGAGCACTCATCTTTTGTCAACTCATGTTGCCC 600 consensus_14437#1 ------------------------------------------------------------ consensus_14437#2 ------------------------------------------------------------ consensus_14437#3 ------------------------------------------------------------ consensus_14437#0 GGCTCGAAAGTGGCCACCTCTGGTTGTAAGTGGATCGGATGATGGAACAGCAAAGCTGTG 660 consensus_14437#1 ------------------------------------------------------------ consensus_14437#2 ------------------------------------------------------------ consensus_14437#3 ------------------------------------------------------------ consensus_14437#0 GGATTTGCGTCAAAGAGGTGCTATACAAACACTTCCCGACAAGTACCAGATTACAGCCGT 720 consensus_14437#1 ------------------------------------------------------------ consensus_14437#2 ------------------------------------------------------------ consensus_14437#3 ------------------------------------------------------------ consensus_14437#0 CAGCTTCTCAGAGGCGGCAGATAAGGTTTTCACTGGTGGCCTAGACAATGATGTCAAATG 780 consensus_14437#1 ------------------------------------------------------------ consensus_14437#2 ------------------------------------------------------------ consensus_14437#3 ------------------------------------------------------------ consensus_14437#0 GTGGGATCTCCGTAAGAATGAAGTGACAGAGTATCTCAAAGGACACCAGGACATGATAAC 840 consensus_14437#1 -----------------------------------------------------CGTCTCG 7 consensus_14437#2 ------------------------------------------------------------ consensus_14437#3 ------------------------------------------------------------ consensus_14437#0 CGGAATGCAGCTTAGTCCAGATGGGTCTTATCTCCTAACCAATGCAATGGACAATGAGCT 900 consensus_14437#1 TCTCGTTCCTCCCTCTCCGGCGGCCGGATCGGCGAACCCCCTCCCGCCGCCGCACGCGCG 67 consensus_14437#2 ---------------------------------TCGTGCCGAATTCGGCACGAGCACAGG 27 consensus_14437#3 ------------------------------------------------------------ consensus_14437#0 CAAAATCTGGGACTTGCGCCCTTACGCCCCAGAGAACCGGAACATCAAGACCCTCACAGG 960 consensus_14437#1 CGCGCTCCCCGGCTTCGCCGCCGAGCAGAGGGGTAGCGGAGGCTANGGCTCCCTTCCGGG 127 consensus_14437#2 ACACCAGCAT--AACTTTGAGAAGAACCTGTTGAAGTGCAGCTGGTC--CCCTGATAATC 83 consensus_14437#3 -------------------------------------GCAGCTGGAC--CCCTGATAATC 21 consensus_14437#0 ACACCAGCAT--AACTTTGAGAAGAACCTGTTGAAGTGCAGCTGGTC--CCCTGATAATC 1016 consensus_14437#1 AACTTAACTTCCAACTTCAAGATGTTCCCCCCAGGCAACAATTCTTTGGCTCTNTCAGCC 187 ** * * ** * * consensus_14437#2 GCAAGGTCACTGCCGGGAGTG--------CTGATCGCAT---GGTCTACATCTGGGACAC 132 consensus_14437#3 GNAAGGTCACTNCCGGGAGTG--------CTGATCGCNT---GGTCTACATCTGGGACAC 70 consensus_14437#0 GCAAGGTCACTGCCGGGAGTG--------CTGATCGCAT---GGTCTACATCTGGGACAC 1065 consensus_14437#1 CCAAGGCCAGGAATGGAGCTGGCTAACATTCAACAGCATCCTAATCAAGCTCTTGGGCCT 247 **** ** ** ** * ** * ** * *** ** * consensus_14437#2 AAC----ATCAAGGCGGATCTTGT------------ACAA----GCTTCCTGGCCACAAC 172 consensus_14437#3 AAC----ATCAAGGCGGATCTTGT------------ACAA----GCTTCCTGGCCACAAC 110 consensus_14437#0 AAC----ATCAAGGCGGATCTTGT------------ACAA----GCTTCCTGGCCACAAC 1105 consensus_14437#1 GGTGGGAAGCAACGTACATCCAGTCTGGAGGCCCCAATAATGCTACTCACAGGCCATCAG 307 * *** * *** ** * ** ** * ***** * consensus_14437#2 GGTTCTGTCAACGAGACCGCATTCCATCCCACCGAGCCTGTCATTGGATCTTGCGGCAGT 232 consensus_14437#3 GGTTCTNTCAACGAGACCGCATTCCATCCCACCGAGCCTGTCATTGGATCTTGCGGCAGT 170 consensus_14437#0 GGTTCTGTCAACGAGACCGCATTCCATCCCACCGAGCCTGTCATTGGATCTTGCGGCAGT 1165 consensus_14437#1 AGCGCTGTGTACTGTATGAAGTTCAACCCTGCAGGAACTGTGATAGCATCAGGCTCCCAT 367 * ** * ** * *** * ** * * **** ** * *** ** * * consensus_14437#2 GACAAGCAGATTTATCTTGGGGAGCTTTAAGGGTACTACCATCACATTTT--CATCTAGA 290 consensus_14437#3 GACAAGCAGATTTATCTTGGGGAGCTTTAAGGGTACTACCATCACATTTT--CATCTAGA 228 consensus_14437#0 GACAAGCAGATTTATCTTGGGGAGCTTTAAGGGTACTACCATCACATTTT--CATCTAGA 1223 consensus_14437#1 GACAAGGATATCT-TCTTGTGGATGTCCATGGTGACTGTAAGAACTACATGGTACTGAGA 426 ****** * ** * ***** *** * * ** *** * ** * * *** consensus_14437#2 AGCTATTG----TACTATCTTG--TTATGAAGGCAAACAGA---AACTA--CCATCCTTG 339 consensus_14437#3 AGCTATTG----TNCTATCTTG--TTATGAAGGCAAACAGA---AACTA--CCATCCTTG 277 consensus_14437#0 AGCTATTG----TACTATCTTG--TTATGAAGGCAAACAGA---AACTA--CCATCCTTG 1272 consensus_14437#1 GGGCACANGAAATGCTGTCTTGACCTTCAATGGACTACTGATGGGACTAGATCATCTCTG 486 * * * ** ***** * * ** ** ** **** **** ** consensus_14437#2 CAATGTTTCTTCATCTGAAA-AATTCTAATGCACGATTG---ACTGACCAGAA------- 388 consensus_14437#3 CAATGTTTCTTCATCTGNAA-AATTCTAATGCACGATTG---ACTGACCAGAA------- 326 consensus_14437#0 CAATGTTTCTTCATCTGAAA-AATTCTAATGCACGATTG---ACTGACCAGAA------- 1321 consensus_14437#1 CAAGCCCTGACAGACTGTGACAAGGGTGGAGTGAGACTGCAAGCAAGTCAGAGATGCCGA 546 *** * *** * ** * * ** ** * **** consensus_14437#2 ---TCTCCTTTGTAGAT-TGTATTGAGGCCAGTGGGTCTTTT---CAAACTTCTCCATGT 441 consensus_14437#3 ---TCTCCTTTGTAGAT-TGTATTGAGGCCAGTGGGTCTTTT---CAAAAAAAAAAAAAA 379 consensus_14437#0 ---TCTCCTTTGTAGAT-TGTATTGAGGCCAGTGGGTCTTTT---CAAACTTCTCCATGT 1374 consensus_14437#1 CACTCATCTTTGCAACTATGTGCCCGCTTCGAAGGGCCCTCTGGTTGAAGGACGATATGA 606 ** ***** * * *** * *** * * * ** * consensus_14437#2 TCTGTGCCTTCATCATTC--ATGTTATCCTACCTGTGACTATTCTG--CCATTCCCTGTC 497 consensus_14437#3 AAAA-------------------------------------------------------- 383 consensus_14437#0 TCTGTGCCTTCATCATTC--ATGTTATCCTACCTGTGACTATTCTG--CCGAAAAAAAAA 1430 consensus_14437#1 ACACCACTGGGAATGCGCCAAAGTGCTTCAACCTTCCACAGTACCAATCAGCGTACTTTC 666 consensus_14437#2 AATCACTGATTGCATGTTTACCTCTCTGAAACCTGCTTGCAATCTGCTGATTTGAGGCAG 557 consensus_14437#3 ------------------------------------------------------------ consensus_14437#0 AAAAAAAAAAGG------------------------------------------------ 1442 consensus_14437#1 AAGCGCAATAGTTACTGTGCCTACAGATCATGGGATCCGAGAAAATCCATTTTAAGACCG 726 consensus_14437#2 TGTTTAACAAACATTTTTTTGTTACTGGTGGCGCGGGAGCTTTGCTA------------- 604 consensus_14437#3 ------------------------------------------------------------ consensus_14437#0 ------------------------------------------------------------ consensus_14437#1 GATGATACGATGATTTTCATGGTTATTTCATCGGTCNAGTAATAGGATGAATTCTATAGT 786 consensus_14437#2 --------------- consensus_14437#3 --------------- consensus_14437#0 --------------- consensus_14437#1 AATACTCGGCGCATG 801 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||