These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14440#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 986 fasta sequence [GGCTCTGGGGATCGGCTCGTCTTCCCCCCTCTTCTTTGGTTGGCTTCGTCTCCGCGCACTCACACACCACCACCAAAGGGGAACGGAAGCGAACCCCTCCTCCGCCGCCGCCGCCGGAGATCGCCCGCTGTCCCGCCAATCCGCCGCTGCGGCCTCTGGTTGTCGTCGCGAAGCCGGCGCCTGCGCTCAGCTGGGATGGCGTCGAGTGGAGATCCATCGGCAGTCGTCGTGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCATCGGTGATGGATCAGTAAGCTATGGAAT-GGATGATGCAGACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACTACCCAGACAGGCCACCAACTGTAAAATTTCACTCAAGAATCAACATGACCTGTGTAAACCCAAAGAATGGATTGGGTGACCAAAGGAAGTTCAGCCTGTTGTCAAATTGGCG-CCGCGAGTAC-ACAATGGAGGCTATCTTGACCCAACTTAAGAAAGAGATGGC-AGCATCACACAACCGGAAACTAGTGCAGCCTCCAGAGGGGACATTCTTCTAGAAGCAGGCGCCCGCCACTCATCTCCGCATGCCATGGATGAACCATTGTAATTCTCTTTCTATATATCGCATGAGATTTGAGCCGTCTGAACATTTGGTG-CAAATGATTGTAGCTGAACTTCGCTGGTACTACCTTGTACGTGGTCCGTGTACGTCCTGTGTTTGTGTCGTGTCTCGCTTGTTTGGTTAACAGTTTGCCAGTACGGCATTACCTCAAGAGACAAAACTAACGAATTGGGGTAAAATCTTTGTAATGAATCTAGTGATGCTCTGCAGATTTGGCTATGTTTCTGAAGTGGTACTATGCTGGTTCTTTTTCTGGCA-----AAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF278979 [GGCTCTGGGGATCGGCTCGTCTTCCCCCCTCTTCTTTGGTTGGCTTCGTCTCCGCGCACTCACACACCACCACCAAAGGGGAACGGAAGCGAACCCCTCCTCCGCCGCCGCCGCCGGAGATCGCCCGCTGTCCCGCCAATCCGCCGCTGCGGCCTCTGGTTGTCGTCGCGAAGCCGGCGCCTGCGCTCAGCTGGGATGGCGTCGAGTGGAGATCCATCGGCAGTCGTCGTGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCATCGGTGATGGATCAGTAAGCTATGGAAT GGATGATGCAGACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACTACCCAGACAGGCCACCAACTGTAAAATTTCACTCAAGAATCAACATG ] [+] EMBL AK068060 [ TCTGGGGATCGGCTCGTCTTCCCCCCTCTTCTTTGGTTGGCTTCGTCTCCGCGCACTCACACACCACCACCAAAGGGGAACGGAAGCGAACCCCTCCTCCGCCGCCGCCGCCGGAGATCGCCCGCTGTCCCGCCAATCCGCCGCTGCGGCCTCTGGTTGTCGTCGCGAAGCCGGCGCCTGCGCTCAGCTGGGATGGCGTCGAGTGGAGATCCATCGGCAGTCGTCGTGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCATCGGTGATGGATCAGTAAGCTATGGAAT GGATGATGCAGACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACTACCCAGACAGGCCACCAACTGTAAAATTTCACTCAAGAATCAACATG ] [+] EMBL C26891 [ CCCCTCTTCTTTGGTTGGCTTCGTCTCCGCGCACTCACACACCACCACCAAAGGGGAACGGAAGCGAACCCCTCCTCCGCCGCCGCCGCCGGAGATCGCCCGCTGTCCCGCCAATNCGCCGCTGCGGCCTCTGGTTGTCGTCGCGAAG CGGCGNCTGCGCTCAGCTGGNATGGCGTCGAGTNGAGATCCATCGNCAGTCGTCGTGCCTAGGAACTTCAGACTTCTAGAAGAGCTTTAGAGAGNNGAGAAGTGCATCGGTGATGGATCANTAAGCTATTGAATGGGATCATNCAAAC ] [+] EMBL AU184111 [ AGGGGAACGGAAGCGAACCCCTCCTCCGCCGCCGCCGCCGGAGATCGCCCGCTGTCCCGCCAATCCGCCGCTGCGGCCTCTGGTTGTCGTCGCGAAGCCGGCGCCTGCGCTCAGCTGGGATGGCGTCGAGTGGAGATCCATCGGCAGTCGTCGTGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCATCGGTGATGGATCAGTAAGCTATGGAAT GGATGATGCAGACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACTACCCAGACAGGCCACCAACTGTAAAATTTCACTCAAGAATCAACATG ] [+] EMBL BE040932 [ GGAACGGAAGCGAACCCCTCCTCCGCCGCCGCCGCCGGAGATCGCCCGCTGTCCCGCCAATCCGCCGCTGCGGCCTCTGGTTGTCGTCGCGAAGCCGGCGCCTGCGCTCAGCTGGGATGGCGTCGAGTGGAGATCCATCGGCAGTCGTCGTGCCTAGGAACTTCAGACTGCTAGAAGAGCTCGAGAGAGGGGAGAAGGGCATCGGTGATGGATCAGTAAGCTATGGAAT GGATGATGCAGACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGATAAGGACTACCCAGACAGGCCACCAACTGTAAAATTTCACTCAAGAATCAACATGACCTGTGTAAACCCAAAGAATGGATTGGGTGACCAAAGGAAGTTCAGCCTGTTGTCAAATTGGCG CCGCGAGTAC CAATGGAGGCTATCTTGACCCAAC TAAGAAAGAAATGG GGCATCACACAACC ] [+] EMBL CF333694 [ CGGAAGCGAACCCCTCCTCCGCCGCCGCCGCCGGAGATCGCCCGCTGTCCCGCCAATCCGCCGCTGCGGCCTCTGGTTGTCGTCGCGAAGCCGGCGCCTGCGCTCAGCTGGGATGGCGTCGAGTGGAGATCCATCGGCAGTCGTCGTGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCATCGGTGATGGATCAGTAAGCTATGGAAT GGATGATGCAGACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACTACCCAGACAGGCCACCAACTGTAAAATTTCACTCAAGAATCAACATG ] [+] EMBL AU031390 [ gAGANTGGATTGGTTNACCAAAGGAAGTTCANCCTGTTGTAAAATTGGCGCCCGCGAGTACAACAATGGANGCTATCTTGNCCCAACTTANGAAAGAGATGGCNAGCATCACANAACCGGAAANTAGTGCAGCCTCCAGAGGGGACATTCTTCTAGAAGCAGGCGCCCGCCACTCATCTCCGCATGCCATGGATGAACCATTGTAATTCTATTTCTATATATNGNATGAGATTTGAGCCGTNTGAACATTTGGTG CAAATGATTGTAGCTGAACTTCGCTGGTACTACNTTGTACGTGGNCCGTGTACGTCCTGTGTTTGTGTCGTGTCTCGCTTGTTTGGTTAACAGTTTGCCAGTNCGGCATTACCTCAAGAGACAAAACTAACGAATTGGGGTAAAAaaa ] [+] EMBL BI798470 [ GAAGTTCAGCCTGTTGTCAAATTGGCG CCGCGAGTAC ACAATGGAGGCTATCTTGACCCAACTTAAGAAAGAGATGGC AGCATCACACAACCGGAAACTAGTGCAGCCTCCAGAGGGGACATTCTTCTAGAAGCAGGCGCCCGCCACTCATCTCCGCATGCCATGGATGAACCATTGTAATTCTCTTTCTATATATCGCATGAGATTTGAGCCGTCTGAACATTTGGTG CAAATGATTGTAGCTGAACTTCGCTGGTACTACCTTGTACGTGGTCCGTGTACGTCCTGTGTTTGTGTCGTGTCTCGCTTGTTTGGTTAACAGTTTGCCAGTACGGCATTACCTCAAGAGAC AAACTAACGAATTGGGGTAAAATCTTTGTAATGAATCTAGTGATGCTCTGCAaaaaa ] [-] EMBL CF278980 [ AAGTTCAGCCTGTTGTCAAATTGGCG CCGCGAGTAC ACAATGGAGGCTATCTTGACCCAACTTAAGAAAGAGATGGC AGCATCACACAACCGGAAACTAGTGCAGCCTCCAGAGGGGACATTCTTCTAGAAGCAGGCGCCCGCCACTCATCTCCGCATGCCATGGATGAACCATTGTAATTCTCTTTCTATATATCGCATGAGATTTGAACCGTATGAACATTTGGTGACCTAT TTAGTAGCTGAACTTCGCTGGTAATACCTTGTACGTGGTCCGAAAAAATCCTGTGTTTGTGTCGTGTCTCGCTTGTTTGGTTAACAGTTTGCCAAAACGGCATTACCTCAAGAGACAAAACTAACGAATTGGGGTAAAATCTTTGTAATGAATCTAGTGATGCTCTGCAGATTGGAATATGTTTCTGAAGTGGTAaaaaaaa ] [-] EMBL CF334962 [ AAGTTCAGCCTGTTGTCAAATTGGCG CCGCGAGTAC ACAATGGAGGCTATCTTGACCCAACTTAAGAAAGAGATGGC AGCATCACACAACCGGAAACTAGTGCAGCCTCCAGAGGGGACATTCTTCTAGAAGCAGGCGCCCGCCACTCATCTCCGCATGCCATGGATGAACCATTGTAATTCTCTTTCTATATATCGCATGAGATTTGAGCCGTCTGAACATTTGGTG CAAATGATTGTAGCTGAACTTCGCTGGTACTACCTTGTACGTGGTCCGTGTACGTCCTGTGTTTGTGTCGTGTCTCGCTTGTTTGGTTAACAGTTTGCCAGTACGGCGTTACCTCAAGAGACAAAACTAACGAATTGGGGTAAAATCTTTGTAATGAATCTAGTGATGCTCTGCAGATTTGGCTATGTTTCTGAAGTGGTACTATGCTGGTTCTTTTTCTGGCA AAAAAAA ] [-] EMBL CF333693 [ AAGTTCAGCCTGTTGTCAAATTGGCG CCGCGAGTAC ACAATGGAGGCTATCTTGACCCAACTTAAGAAAGAGATGGC AGCATCACACAACCGGAAACTAGTGCAGCCTCCAGAGGGGACATTCTTCTAGAAGCAGGCGCCCGCCACTCATCTCCGCATGCCATGGATGAACCATTGTAATTCTCTTTCTATATATCGCATGAGATTTGAGCCGTCTGAACATTTGGTG CAAATGATTGTAGCTGAACTTCGCTGGTACTACCTTGTACGTGGTCCGTGTACGTCCTGTGTTTGTGTCGTGTCTCGCTTGTTTGGTTAACAGTTTGCCAGTACGGCATTACCTCAAGAGACAAAACTAACGAATTGGGGTAAAATCTTTGTAATGAATCTAGTGATGCTCTGCAGATTTGGCTAaaaaaaaa ] [-] EMBL CF333334 [ TAAGAAAGAGATGGC AGCATCACACAACCGGAAACTAGTGCAGCCTCCAGAGGGGACATTCTTCTAGAAGCAGGCGCCCGCCACTCATCTCCGCATGCCATGGATGAACCATTGTAATTCTCTTTCTATATATCGCATGAGATTTGAGCCGTCTGAACATTTGGTG CAAATGATTGTAGCTGAACTTCGCTGGTACTACCTTGTACGTGGTCCGTGTACGTCCTGTGTTTGTGTCGTGTCTCGCTTGTTTGGTTAACAGTTTGCCAGTACGGCGTTACCTCAAGAGACAAAACTAACGAATTGGGGTAAAATCTTTGTAATGAATCTAGTGATGCTCTGCAGATTTGGCTATGTTTCTGAAGTGGTACTATGCTGGTTCTTTTTCTGGCA AAAAAAA ] [+] EMBL AU166788 [ GTNTGAACATTTGGTG CAAATNATTGTAGCTGAACTTCGCTGGTACTNCCTTGTACGTGGTCCGTGNACGTCCTGTGTTTGTGTCGTGTCTCGCTTGTTTGGTTAACAGTTTGCCAGTACGGCATTNCCTCAANAGACAAAACTAACGAATTGGGGTAAAATNTTTGTAATGAATCTAGTGATGCTCTGCANATTTGGCTATGTTTTTGAAGTGGNACTATGCTGGTTCTTTTTNTGGCATTGCNAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14440#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 417 fasta sequence [GAGTAGGAAAACACACCACCACCAAAGGGGAACGGAAGCGAACCCCTCCTCCGCCGCCGCCGCCGGAGATCGCCCGCTGTCCCGCCAATCCGCCGCTGCGGCCTCTGGTTGCCGTCGCGAAGCCGGCGCCTGCGCTCAGCTGGGATGGCGTCGAGTGGAGATCCATCGGCAGTCGTCGTGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCATCGGTGATGGATCAGTAAGCTATGGAATGGATGATGCAGACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACTACCCAGACAGGCCACCAACTGTAAAATTTCACTCAAGAATCAACATG] [+] EMBL CF333333 [GAGTAGGAAAACACACCACCACCAAAGGGGAACGGAAGCGAACCCCTCCTCCGCCGCCGCCGCCGGAGATCGCCCGCTGTCCCGCCAATCCGCCGCTGCGGCCTCTGGTTGCCGTCGCGAAGCCGGCGCCTGCGCTCAGCTGGGATGGCGTCGAGTGGAGATCCATCGGCAGTCGTCGTGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCATCGGTGATGGATCAGTAAGCTATGGAATGGATGATGCAGACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACTACCCAGACAGGCCACCAACTGTAAAATTTCACTCAAGAATCAACATG] [+] EMBL CF334961 [ GAAGCGAACCCCTCCTCCGCCGCCGCCGCCGGAGATCGCCCGCTGTCCCGCCAATCCGCCGCTGCGGCCTCTGGTTGCCGTCGCGAAGCCGGCGCCTGCGCTCAGCTGGGATGGCGTCGAGTGGAGATCCATCGGCAGTCGTCGTGCCTAGGAACTTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCATCGGTGATGGATCAGTAAGCTATGGAATGGATGATGCAGACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGTCCCCATAACACTGTCCATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACTACCCAGACAGGCCACCAACTGTAAAATTTCACTCAAGAATCAACATG] consensusID : consensus_14440#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 237 fasta sequence [CATGAGATTTGAGCCGTNTGAACATTTGGTGCAAATGATTGTAGCTGAACTTCGCTGGTACTACCTTGTACGTGGTCCGTGTACGTCCTGTGTTTGTGTCGTGTNTCGCTTGTTTGGTTAACAGTTTGCCAGTACGGCATTNCCTCAANAGACAAAACTAACGAATTGGGGTAAAATNTTTGTAATGAATCTAGTGATGCTNTGCAGATTTGGCTAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU184112 [CATGAGATTTGAGCCGTNTGAACATTTGGTGCAAATGATTGTAGCTGAACTTCGCTGGTACTACCTTGTACGTGGTCCGTGTACGTCCTGTGTTTGTGTCGTGTNTCGCTTGTTTGGTTAACAGTTTGCCAGTACGGCATTNCCTCAANAGACAAAACTAACGAATTGGGGTAAAATNTTTGTAATGAATCTAGTGATGCTNTGCAGATTTGGCTAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14440#0 GGCTCTGGGGATCGGCTCGTCTTCCCCCCTCTTCTTTGGTTGGCTTCGTCTCCGCGCACT 60 consensus_14440#1 ---------------------------------------------------GAGTAGGAA 9 consensus_14440#2 ------------------------------------------------------------ consensus_14440#0 CACACACCACCACCAAAGGGGAACGGAAGCGAACCCCTCCTCCGCCGCCGCCGCCGGAGA 120 consensus_14440#1 AACACACCACCACCAAAGGGGAACGGAAGCGAACCCCTCCTCCGCCGCCGCCGCCGGAGA 69 consensus_14440#2 ------------------------------------------------------------ consensus_14440#0 TCGCCCGCTGTCCCGCCAATCCGCCGCTGCGGCCTCTGGTTGTCGTCGCGAAGCCGGCGC 180 consensus_14440#1 TCGCCCGCTGTCCCGCCAATCCGCCGCTGCGGCCTCTGGTTGCCGTCGCGAAGCCGGCGC 129 consensus_14440#2 ------------------------------------------------------------ consensus_14440#0 CTGCGCTCAGCTGGGATGGCGTCGAGTGGAGATCCATCGGCAGTCGTCGTGCCTAGGAAC 240 consensus_14440#1 CTGCGCTCAGCTGGGATGGCGTCGAGTGGAGATCCATCGGCAGTCGTCGTGCCTAGGAAC 189 consensus_14440#2 --------CATGAGATTTGAGCCGTNTGAACATTTGGTGCAAATGATTGTAGCT--GAAC 50 * * * * ** ** * ** * * * * ** ** **** consensus_14440#0 TTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCATCGGTGATGGATCAGTAAGC 300 consensus_14440#1 TTCAGACTGCTAGAAGAGCTTGAGAGAGGGGAGAAGGGCATCGGTGATGGATCAGTAAGC 249 consensus_14440#2 TTCG--CTGGTACTA--CCTTGTACGTGGTCCGTGTACGTCCTGTGTTTGTGTCGTGTNT 106 *** *** ** * **** * ** * * *** * * ** consensus_14440#0 TATGGAATGGATGATGCAGACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGT 360 consensus_14440#1 TATGGAATGGATGATGCAGACGATATCTACATGCGCTCTTGGACAGGCACAATTATTGGT 309 consensus_14440#2 CGCTTGTTTGGTTA-ACAGTTTGCCAGTACGGCATTNCCTCAANAGACAAAACTAACGAA 165 * * * * *** *** * * * ** ** ** ** * consensus_14440#0 CCCCATAACACTGTCCATGA-GGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGA 419 consensus_14440#1 CCCCATAACACTGTCCATGA-GGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGA 368 consensus_14440#2 TTGGGGTAAAATNTTTGTAATGAATCTAGTGATGCTNTGCAGATTTGGCTAAAAAAAAAA 225 * * * * * * * * * * * ** ** * ** * consensus_14440#0 CTACCCAGACAGGCCACCAACTGTAAAATTTCACTCAAGAATCAACATGACCTGTGTAAA 479 consensus_14440#1 CTACCCAGACAGGCCACCAACTGTAAAATTTCACTCAAGAATCAACATG----------- 417 consensus_14440#2 AAAAAAAAAAAA------------------------------------------------ 237 * * * * consensus_14440#0 CCCAAAGAATGGATTGGGTGACCAAAGGAAGTTCAGCCTGTTGTCAAATTGGCGCCGCGA 539 consensus_14440#1 ------------------------------------------------------------ consensus_14440#2 ------------------------------------------------------------ consensus_14440#0 GTACACAATGGAGGCTATCTTGACCCAACTTAAGAAAGAGATGGCAGCATCACACAACCG 599 consensus_14440#1 ------------------------------------------------------------ consensus_14440#2 ------------------------------------------------------------ consensus_14440#0 GAAACTAGTGCAGCCTCCAGAGGGGACATTCTTCTAGAAGCAGGCGCCCGCCACTCATCT 659 consensus_14440#1 ------------------------------------------------------------ consensus_14440#2 ------------------------------------------------------------ consensus_14440#0 CCGCATGCCATGGATGAACCATTGTAATTCTCTTTCTATATATCGCATGAGATTTGAGCC 719 consensus_14440#1 ------------------------------------------------------------ consensus_14440#2 ------------------------------------------------------------ consensus_14440#0 GTCTGAACATTTGGTGCAAATGATTGTAGCTGAACTTCGCTGGTACTACCTTGTACGTGG 779 consensus_14440#1 ------------------------------------------------------------ consensus_14440#2 ------------------------------------------------------------ consensus_14440#0 TCCGTGTACGTCCTGTGTTTGTGTCGTGTCTCGCTTGTTTGGTTAACAGTTTGCCAGTAC 839 consensus_14440#1 ------------------------------------------------------------ consensus_14440#2 ------------------------------------------------------------ consensus_14440#0 GGCATTACCTCAAGAGACAAAACTAACGAATTGGGGTAAAATCTTTGTAATGAATCTAGT 899 consensus_14440#1 ------------------------------------------------------------ consensus_14440#2 ------------------------------------------------------------ consensus_14440#0 GATGCTCTGCAGATTTGGCTATGTTTCTGAAGTGGTACTATGCTGGTTCTTTTTCTGGCA 959 consensus_14440#1 ------------------------------------------------------------ consensus_14440#2 ------------------------------------------------------------ consensus_14440#0 AAAAAAAAAAAAAAAAAAAAAAAAAAA 986 consensus_14440#1 --------------------------- consensus_14440#2 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||