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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14441#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1209 fasta sequence
[CGCCATCTCTCTCCTCGCTTTTAAACTCCCGCGAAACAACCGCTCGCTCACACACACACACCCAGAGAAGCGAGACAATCTGCTGCTGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCAAGAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGGCGGCGGCGCGGCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCCACCAGGGCGGCCGTCGCCGACGATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACGGTGGCGTGCGGGAAGGGGAACTGCACGGCGGCGTCGGGGTTCCCGGGGTACAGGTGCGAGTGCGAGCCTGGGTGGAAGCAGATGCACGTCGGCGACCAGGCCAGCTTCCTGCCCTGCGTCATCCCCAACTGTTCCATTGACCGT-GCATGTTCTAACACTA-TAGCACCAGCACCTGCGCCTTTACCATCACCCAAAAATTTCTCCCTCCCAACAGACCGTAACT-ACTGCAACTGGCTGTTATTTAGATTTTCCTTTTAAAAAGACTTCCTCAGAACTTTTTGATAAAAATACCATTTCCATTTCATCTGTGATCTGATCATCAATTCACCATTGACTGTATAATTGTGTATGCATAGCCTGTCAATTAGCTTACTGCGGTTCGGGAGGCACATGCAAGAATGGGACAGGCCTCAGCTACCACTGCGAGTGCAGTGAGGGTTTCAGTAACCTTCTGAACATCACCACAATGCCATGTTTTCAGAATTGTTCAATCGGTGCGGATTGCGCAAGCATAGGGCTCTCTCCATCCTCAAACTCTTCCAGTTCTCCTGCACCACCGGGATCTGCTGGCATATCTAACA-ATGGGGCGATTTCACATAAAATTCTACTTCCCTTGCTGATTTTGGGCTCA-CTGA-TGGTCTG-TCAGGCTATATAGATAGAGAATGGAGCATACGTAGTACATTTGAGCTAGATTGTTTCTGCCACGGACAGGATAGAGCAGTTAGCCTGTTAGAGATGTACACCTTTTGGGATGTTTGAAGTGTTGTCCA-GTGT-CCAC-GTTATGGTTCTTTTATTCTGTGTGAGATTTGATCACATTCATGTGAATTAAAATGGAATAAACTGTCTCTGTGAATAACTGAATAAAGGGATGTTTATATGGGCAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK059911 [CGCCATCTCTCTCCTCGCTTTTAAACTCCCGCGAAACAACCGCTCGCTCACACACACACACCCAGAGAAGCGAGACAATCTGCTGCTGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCAAGAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGGCGGCGGCGCGGCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCCACCAGGGCGGCCGTCGCCGACGATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACGGTGGCGTGCGGGAAGGGGAACTGCACGGCGGCGTCGGGGTTCCCGGGGTACAGGTGCGAGTGCGAGCCTGGGTGGAAGCAGATGCACGTCGGCGACCAGGCCAGCTTCCTGCCCTGCGTCATCCCCAACTGTTCCATTGACCGT GCATGTTCTAACACTA TAGCACCAGCACCTGCGCCTTTACCATCACCCAAAAATTTCTCCCTCCCAACAGACCGTAACT ACTGCAACTGGCTGTTATTTAGATTTTCCTTTTAAAAAGACTTCCTCAGAACTTTTTGATAAAAATACCATTTCCATTTCATCTGTGATCTGATCATCAATTCACCATTGACTGTATAATTGTGTATGCATAGCCTGTCAATTAGCTTACTGCGGTTCGGGAGGCACATGCAAGAATGGGACAGGCCTCAGCTACCACTGCGAGTGCAGTGAGGGTTTCAGTAACCTTCTGAACATCACCACAATGCCATGTTTTCAGAATTGTTCAATCGGTGCGGATTGCGCAAGCATAGGGCTCTCTCCATCCTCAAACTCTTCCAGTTCTCCTGCACCACCGGGATCTGCTGGCATATCTAACA ATGGGGCGATTTCACATAAAATTCTACTTCCCTTGCTGATTTTGGGCTCA CTGA TGGTCTG TCAGGCTATATAGATAGAGAATGGAGCATACGTAGTACATTTGAGCTAGATTGTTTCTGCCACGGACAGGATAGAGCAGTTAGCCTGTTAGAGATGTACACCTTTTGGGATGTTTGAAGTGTTGTCCA GTGT CCAC GTTATGGTTCTTTTATTCTGTGTGAGATTTGATCACATTCATGTGAATTAAAATGGAATAAACTGTCTCTGTGA ]
[+] EMBL AU056619 [ TGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCAAGAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGG GGCGGCGCGGCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCCACCAGGGCGGCCGTCGCCGACGATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACGGTGGCGTGCGGGAAGGGGAACTGCACGGCGGCGTCGGGGTTCCCGGGGTACAGGTGCGAGTGCGAGCCTGGGTGGAAGCAGATGCACGTCGGCGACCAGGCCAGCTTCCTGCCCTGCGTCATCCCCAACTGTTCCATTGACCGTGGCATGTTCTAACACTATTAGCACCAGCACCTGCGCCTTTACCATCACCCAAAAATTTCTCCCTCCCAACAGACCGTAACTAACTGCAACTGGCTGTTATTTAGATTTTCCTTTTAAAAAGACTTCCTCAGAACTT ]
[+] EMBL BI810617 [ aGCACATGCAAGAATGGGACAGGCCTCAGCTACCACTGCGAGTGCAGTGAGGGTTTCAGTAACCTTCTGAACATCACCACAATGCCATGTTTTCAGAATTGTTCAATCGGTGCGGATTGCGCAAGCATAGGGCTCTCTCCATCCTCAAACTCTTCCAGTTCTCCTGCACCACCGGGATCTGCTGGCATATCTAACACATGGGGCGATTTCACATAAAATTCTACTTCCCTTGCTGATTTTGGGCTCA CTGA TGGTCTG TCAGGCTATATAGATAGAGAATGGAGCATACGTAGTACATTTGAGCTAGATTGTTTCTGCCACGGACAGGATAGA CAGTTAGCCTGTTAGAGATGTACACCTTTTGGGATGTTTGAAGTGTTGTCCA GTGT CCAC GTTATGGTTCTTTTATTCTGTGTGAGATTTGATCACATTCATGTGAATTAAAATGGAATAAACTGTCTCTGTGAATAACTGAAAAAAaa ]
[+] EMBL AU056620 [ AACTCTTCCAGTTCTCCTGCACCACCGGGATCTGCTGGCATATCTAACA ATGGGGCGATTTCACATAAAATTCTACTTCCCTTGCTGATTTTGGGCTCA CTGA TGGTCTG TCAGGCTATATAGATAGAGAATGGAGCATACGTAGTACATTTGAGCTAGATTGTTTCTGCCACGGACAGGATAGAGCAGTTAGCCTGTTAGAGATGTACACCTTTTGGGATGTTTGAAGTGTTGTCCA GTGT CCAC GTTATGGTTCTTTTATTCTGTGTGAGATTTGATCACATTCATGTGAATTAAAATGGNATAAACTGTCTCTGTGAATAACTGAATAAAGGGATGTTTATATGGGCAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BI808287 [ ctgGATTTTGGGCTCACCTGAGTGGTCTGCTCAGGCTATATAGATAGAGAATGGAGCATACGTAGTACATTTGAGCTAGATTGTTTCTGCCACGGACAGGATAGA CCGTTACCCTGTTAGAGATGTACACCTTTTGGGAT TTTGAAGTTTTGTCCACGTGTCCCACAGTTATGGTTCTTTTATTCTGTGTGAGATTTGATCACATTCATGTGAATTAAAATGGAATAAACTGTCTCTGTGAATAACTGAATAAAGGGATGTTTATATGGGAAAAAAAAAA ]
consensusID : consensus_14441#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 841 fasta sequence
[GAAGCGAGACAATCTGCTGCTGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCAAGAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGGCGGCGGCGCGGCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCCACCAGGGCGGCCGTCGCCGACGATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACGGTGGCGTGCGGGATGGGGAACTGCTCGGCGGCGTCTGGCGTGCCTGGTGTCAGGGTGCGAGTGCGGAGCCTGGGTGTGAGCTTGGTGAGCGTGGGCGAGCTGGCGCGGATGCCTGCCCTGCGTGAGGTCGGAGTGTGCGGTGGACCGCGCGTGTCTGGCAGTATGGCTGCAGCTCGTGGCGTCTGGGGAGGCGCGGGAGTTGCGGGTGCTAGCGGACTGCGGGCATGGGGTTACTGCGGATGTGACGGCGTCTGGAGTGGGACTGGCGGAGTGCCACTGGAGGGGCGGTGGTGGGGACTTGTGGGACTGGCGCGGCTGGTGGGATGTGGGTGGGAGGAGTGGTCGGGTTGGCGGTGGGGGGAACTCTGAGTTGTTTGGCGGGGGGGGGAGCGTGGTCACGTGGAGTGCGGTGAGGTGCTCGTGGAGTGGGGGTGGGTGGCGTGGGTGTTGGCGAGGGGCTGGGGATGGGCGGTGTGAATGTGAGTGGGCGAGGGTGCGAGAGGGGTGAAGTAGCGGTGTGGAGATGTGTGACGGGCGGGTGGTGTCGTCGGTGCGGTTGGTGGTGCGTTGGGCGGTGGATGGGCTGGCGTGTAGCTGCATGTGGTG]
[+] EMBL AW155177 [GAAGCGAGACAATCTGCTGCTGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCAAGAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGGCGGCGGCGCGGCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCCACCAGGGCGGCCGTCGCCGACGATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACGGTGGCGTGCGGGATGGGGAACTGCTCGGCGGCGTCTGGCGTGCCTGGTGTCAGGGTGCGAGTGCGGAGCCTGGGTGTGAGCTTGGTGAGCGTGGGCGAGCTGGCGCGGATGCCTGCCCTGCGTGAGGTCGGAGTGTGCGGTGGACCGCGCGTGTCTGGCAGTATGGCTGCAGCTCGTGGCGTCTGGGGAGGCGCGGGAGTTGCGGGTGCTAGCGGACTGCGGGCATGGGGTTACTGCGGATGTGACGGCGTCTGGAGTGGGACTGGCGGAGTGCCACTGGAGGGGCGGTGGTGGGGACTTGTGGGACTGGCGCGGCTGGTGGGATGTGGGTGGGAGGAGTGGTCGGGTTGGCGGTGGGGGGAACTCTGAGTTGTTTGGCGGGGGGGGGAGCGTGGTCACGTGGAGTGCGGTGAGGTGCTCGTGGAGTGGGGGTGGGTGGCGTGGGTGTTGGCGAGGGGCTGGGGATGGGCGGTGTGAATGTGAGTGGGCGAGGGTGCGAGAGGGGTGAAGTAGCGGTGTGGAGATGTGTGACGGGCGGGTGGTGTCGTCGGTGCGGTTGGTGGTGCGTTGGGCGGTGGATGGGCTGGCGTGTAGCTGCATGTGGTG]
consensusID : consensus_14441#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 616 fasta sequence
[ATGGACTGAAGGAGTAGAAAACACACACACCCAGAGAAGCGAGACAATCTGCTGCTGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCAAGAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGGCGGCGGCGCGGCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCCACCA-GGG-CGGCCGTCGCCGACGATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACGGTGGCGTGCGGGAAGGGGAACTGCACGGCGGCGTCGGGGTTCCCGGGGTACAGGTGCGAGTGCGAGCCTGGGTGGAAGCAGATGCACGTCGGCGACCAGGCCAGCTTCCTGCCCTGCGTCATCCCCAACTGTTCCATTGACCGTGCATGTTCTAACACTATAGCACCAGCACCTGCGCCTTTACCATCACCCAAAAATTTCTCCCTCCCAACAGACCCCTGTCAATTAGCTTACTGCGGTTCGGGAGGCACATGCAAGAATGGGACAGGCCTCAGCTACCACTGCGAGTGCAGTGAGGGTTTTCAGTAACCTTCTGAACATCACCACAATGCCATGTTTTCAGAAT]
[+] EMBL CF337719 [ATGGACTGAAGGAGTAGAAAACACACACACCCAGAGAAGCGAGACAATCTGCTGCTGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCAAGAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGGCGGCGGCGCGGCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCCACCA GGG CGGCCGTCGCCGACGATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACGGTGGCGTGCGGGAAGGGGAACTGCACGGCGGCGTCGGGGTTCCCGGGGTACAGGTGCGAGTGCGCGCCTGGGTGGAAGCAGATGCACGTCGGCGACCAGGCCAGCTTCCTGCCCTGCGTCATCCCCAACTGTTCCATTGACCGTGCATGTTCTAACACTATAGCACCAGCACCTGCGCCTTTACCAT ]
[+] EMBL CF317490 [ATGGACTGAAGGAGTAGAAAACACACACACCCAGAGAAGCGAGACAATCTGCTGCTGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCAAGAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGGCGG GGGGCGGCGGTCGTGCTGCTGCTAATCGTCCNGTCGACGGTGGCC CCA GGGCCCGCCGTCGCCGACGATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACGGTGGCGTGCGGGAAGGGGAACTGCACGGCGGCGTCGGGGTTCCCGGNGTACAGGTGCGAGTGCGCGCCTGGGTGGAAGCAGATGCACGTCGGCGACCAGGCCAGCTTCCTGCCCTGCGTCATCCCCAACTGTTCCATTGACCGTGCATGTTCT ACACTATAGCACCAGCA ]
[+] EMBL CF302022 [ GAGTAGA ACACACACCCAGAGAAGCGAGACAATCTGCTGCTGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCAAGAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGGCGGCGGCGCGGCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCCACCAGGGG CGGCCGTCGCCGACGATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACGGTGGCGTGCGGGAAGGGGAACTGCACGGCGGCGTCGGGGTTCCCGGGGTACAGGTGCGAGTGCGAGCCTGGGTGGAAGCAGATGCACGTCGGCGACCAGGCCAGCTTCCTGCCCTGCGTCATCCCCAACTGTTCCATTGACCGTGCATGTTCTAACACTATAGCACCAGCACCTGCGCCTTTACCATCACCCAAAAATTTCTCCCTCCC ACAG ]
[+] EMBL CF333282 [ ACCCAGAGAAGCGAGACAATCTGCTGCTGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCAAGAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGGCGGCGGCGCGGCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCC CCA GGG CGGCCGTCGCCGACGATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACGGTGGCGTGCGGGAAGGGGAACTGCACGGCGGCGTCGGGGTTCCCGGGGTACAGGTGCGAGTGCGAGCCTGGGTGGAAGCAGATGCACGTCGGCGACCAGGCCAGCTTCCTGCCCTGCGTCATCCCCAACTGTTCCATTGACCGTGCATGTTCTAACACTATAGCACCAGCACCTGCGCCTTTACCATCACCCAAAAATTTCTCCCTCCCAACAGACCCCTGTCAATTAGCTTACTGCGGTTCGGGAGGCACATGCAAGAATGGGACAGGCCTCAGCTACCACTGCGAGTGCAGTGAGGGTTTTCAGTAACCTTCTGAACATCACCACAATGCCATGTTTTCAGAAT]
[+] EMBL CF334744 [ ACCCAGAGAAGCGAGACAATCTGCTGCTGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCAAGAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGGCGGCGGCGCGGCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCCACCA GGG CGGCCGTCGCCGACGATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACGGTGGCGTGCGGGAAGGGGAACTGCACGGCGGCGTCGGGGTTCCCGGGGTACAGGTGCGAGTGCGAGCCTGGGTGGAAGCAGATGCACGTCGGCGACCAGGCCAGCTTCCTGCCCTGCGTCATCCCCAACTGTTCCATTGACCGTGCATGTTCTAACACTATAGCACCAGCACCTGCGCCTTTACCATCACCCAAAAATTTCTCCCTCCCAACAGACCCCTGTCAATTAGCTTACTGCGGTTCGGGAGGCACATGCAAGAATGGGACAGGCCTCAGCTACCACTGCGAGTGCAGTGAGGG TTTCAGTAACCTTCTGAACAT ]
[+] EMBL CF279907 [ ATCTGCTGCTGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCAAGAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGGCGGCGGCGCGGCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCCACCAGGGG CGGCCGTCGTCGACGATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACGGTGGCGTGCGGGAAGGGGAACTGCACGGCGGCGTCGGGGTTCCCGGGGTACAGGTGCGAGTGCGAGCCTGGGTGGAAGCAGATGCACGTCGGCGACCAGGCCAGCTTCCTGCCCTGCGTCATCCCCAACTGTTCCATTGACCGTGCATGTTCTAACACTATAGCACCAGCACCc ]
consensusID : consensus_14441#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 443 fasta sequence
[TTTTTAAAATTGTTCAATCGGGGGGGATTGGGCAAGCAAAGGGGTTTTTCCATCCTCAAAATTTTCCAGTTTTCCTGCCCCCCCGGGATTTGGTGGGAAATTTAACAAAGGGGGGATTTCCCAAAAAATTTTACTTCCCCTGCTGATTTTGGGGCCCCTGAAGGTTTGTCAGGGTATATAAATAAAGAATGGGGCAAACGTAGGACATTTTAGGTAAATTGTTTTTGCCCCGGACAGGAAAAAACAGTTAGCCTGTTAAAAAAGGACCCCCTTTGGGAAGTTTTAAGGGTTGTCCAGGGTCCCCGGTAAGGTTTTTTTATTTTGGGGGAGATTTGGTCCCATTCATGTGAATTAAAAAGGAAAAAACTGTTTTTGTGAAAAACTGAAAAAAGGGGGGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF334743 [TTTTTAAAATTGTTCAATCGGGGGGGATTGGGCAAGCAAAGGGGTTTTTCCATCCTCAAAATTTTCCAGTTTTCCTGCCCCCCCGGGATTTGGTGGGAAATTTAACAAAGGGGGGATTTCCCAAAAAATTTTACTTCCCCTGCTGATTTTGGGGCCCCTGAAGGTTTGTCAGGGTATATAAATAAAGAATGGGGCAAACGTAGGACATTTTAGGTAAATTGTTTTTGCCCCGGACAGGAAAAAACAGTTAGCCTGTTAAAAAAGGACCCCCTTTGGGAAGTTTTAAGGGTTGTCCAGGGTCCCCGGTAAGGTTTTTTTATTTTGGGGGAGATTTGGTCCCATTCATGTGAATTAAAAAGGAAAAAACTGTTTTTGTGAAAAACTGAAAAAAGGGGGGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF333281 [ AAAATTGTTCAATCGGGGCGGATTGGGCAAGCATAGGGGTTTTTCCATCCTCAAAATTTTCCAGTTTTCCTGCCCCCCCGGGATTTGGTGGGAAATTTAACAATGGGGGGATTTCACAAAAAATTTTACTTCCCCTGCTGATTTTGGGGTCCCTAATGGTTTGTCAGGCTATATAAATAAAGAATGGGGCAAACGTAGGACATTTTAGGTAAATTGTTTTTGCCCCGGACAGGAAAAAACAGTTAGCCTGTTAAAAATGTACCCCTTTTGGGATGTTTTAAGTGTTGTCCAGGGGCCCCGTTAAGGTTTTTTTATTTTGGGTGAGATTTGATCCCATTCATGTGAATTAAAAAGGAAAAAACTGTTTTTGTGAAAAACTGAAAAAAGGGATGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14441#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence
[TTGTTCAATGGGTGGGGATTGCGCAAGAATAGGGTTTTTTCCATCCTCAAATTTTTCCAGTTTTCTGGCCCCCCGGGGTTTTGTGGGCATATTTAACAAGGGGGGGATTTCACATAAAATTTTATTTCCCTTGCTGATTTGGGGCTCACTAATGGTTTGTCAGGCTATATAAATAGAGAATGGGGCATAGGTAGTCCATTTGAGTTAGATTGTTTTTCCCCCGGACAGGATAAACCAGTTACCCTGTTAAAAATGTCCCCCTTTTGGAATGTTTAAAGTGTTGTCCAGGGTCCCCGTAAGGGTTTTTTTATTCGGGGTGAGATTTGATCCCATTCATGTGAATTAAAAGGGAATAAACGGTTTTTGTGAAAAATTAAATAAAGGGATGTTTATATGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF279906 [TTGTTCAATGGGTGGGGATTGCGCAAGAATAGGGTTTTTTCCATCCTCAAATTTTTCCAGTTTTCTGGCCCCCCGGGGTTTTGTGGGCATATTTAACAAGGGGGGGATTTCACATAAAATTTTATTTCCCTTGCTGATTTGGGGCTCACTAATGGTTTGTCAGGCTATATAAATAGAGAATGGGGCATAGGTAGTCCATTTGAGTTAGATTGTTTTTCCCCCGGACAGGATAAACCAGTTACCCTGTTAAAAATGTCCCCCTTTTGGAATGTTTAAAGTGTTGTCCAGGGTCCCCGTAAGGGTTTTTTTATTCGGGGTGAGATTTGATCCCATTCATGTGAATTAAAAGGGAATAAACGGTTTTTGTGAAAAATTAAATAAAGGGATGTTTATATGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14441#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence
[CCCGGCCAGGATAAACCAGTTAGCCTGTTAAAAATGTCCCCCTTTTGGGATGTTTAAAGTGTTGTCCAGGGTCCCCGTTAAGGTTTTTTTATTCTGGGTGAGATTTGATCCCATTCATGTGAATTAAAATGGAATAAACTGTTTTTGTGAATAACTGAATAAAGGGATGTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF337720 [CCCGGCCAGGATAAACCAGTTAGCCTGTTAAAAATGTCCCCCTTTTGGGATGTTTAAAGTGTTGTCCAGGGTCCCCGTTAAGGTTTTTTTATTCTGGGTGAGATTTGATCCCATTCATGTGAATTAAAATGGAATAAACTGTTTTTGTGAATAACTGAATAAAGGGATGTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14441#3 ------------------------------------------------------------
consensus_14441#5 ------------------------------------------------------------
consensus_14441#4 ------------------------------------------------------------
consensus_14441#0 CGCCATCTCTCTCCTCGCTTTTAAACTCCCGCGAAACAACCGCTCGCTCACACACACACA 60
consensus_14441#1 ------------------------------------------------------------
consensus_14441#2 ------------------------------------------------------------
consensus_14441#3 ------------------------------------------------------------
consensus_14441#5 ------------------------------------------------------------
consensus_14441#4 ------------------------------------------------------------
consensus_14441#0 CCCAGAGAAGCGAGACAATCTGCTGCTGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCA 120
consensus_14441#1 ------------------------------------------------------------
consensus_14441#2 ------------------------------------------------------------
consensus_14441#3 ------------------------------------------------------------
consensus_14441#5 ------------------------------------------------------------
consensus_14441#4 ------------------------------------------------------------
consensus_14441#0 AGAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGGCGGCGGCGC 180
consensus_14441#1 ------------------------------------------------------------
consensus_14441#2 ------------------------------------------------------------
consensus_14441#3 ------------------------------------------------------------
consensus_14441#5 ------------------------------------------------------------
consensus_14441#4 ------------------------------------------------------------
consensus_14441#0 GGCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCCACCAGGGCGGCCGTCGCCGA 240
consensus_14441#1 ------------------------------------------------------------
consensus_14441#2 ------------------------------------------------------------
consensus_14441#3 ------------------------------------------------------------
consensus_14441#5 ------------------------------------------------------------
consensus_14441#4 ------------------------------------------------------------
consensus_14441#0 CGATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGAC 300
consensus_14441#1 ------------------------------------------------------------
consensus_14441#2 ------------------------------------------------------------
consensus_14441#3 ------------------------------------------------------------
consensus_14441#5 ------------------------------------------------------------
consensus_14441#4 ------------------------------------------------------------
consensus_14441#0 GGTGGCGTGCGGGAAGGGGAACTGCACGGCGGCGTCGGGGTTCCCGGGGTACAGGTGCGA 360
consensus_14441#1 ------------------------------------------------------------
consensus_14441#2 ------------------------------------------------------------
consensus_14441#3 ------------------------------------------------------------
consensus_14441#5 ------------------------------------------------------------
consensus_14441#4 ------------------------------------------------------------
consensus_14441#0 GTGCGAGCCTGGGTGGAAGCAGATGCACGTCGGCGACCAGGCCAGCTTCCTGCCCTGCGT 420
consensus_14441#1 ------------------------------------------------------------
consensus_14441#2 ------------------------------------------------------------
consensus_14441#3 ------------------------------------------------------------
consensus_14441#5 ------------------------------------------------------------
consensus_14441#4 ------------------------------------------------------------
consensus_14441#0 CATCCCCAACTGTTCCATTGACCGTGCATGTTCTAACACTATAGCACCAGCACCTGCGCC 480
consensus_14441#1 ------------------------------------------------------------
consensus_14441#2 ------------------------------------------------------------
consensus_14441#3 ------------------------------------------------------------
consensus_14441#5 ------------------------------------------------------------
consensus_14441#4 ------------------------------------------------------------
consensus_14441#0 TTTACCATCACCCAAAAATTTCTCCCTCCCAACAGACCGTAACTACTGCAACTGGCTGTT 540
consensus_14441#1 ------------------------------------------------------------
consensus_14441#2 ------------------------------------------------------------
consensus_14441#3 ------------------------------------------------------------
consensus_14441#5 ------------------------------------------------------------
consensus_14441#4 ------------------------------------------------------------
consensus_14441#0 ATTTAGATTTTCCTTTTAAAAAGACTTCCTCAGAACTTTTTGATAAAAATACCATTTCCA 600
consensus_14441#1 ------------------------------------------------------------
consensus_14441#2 ------------------------------------------------------------
consensus_14441#3 ------------------------------------------------------------
consensus_14441#5 ------------------------------------------------------------
consensus_14441#4 ------------------------------------------------------------
consensus_14441#0 TTTCATCTGTGATCTGATCATCAATTCACCATTGACTGTATAATTGTGTATGCATAGCCT 660
consensus_14441#1 ------------------------------------------------------------
consensus_14441#2 ------------------------------------------------------------
consensus_14441#3 ------------------------------------------------------------
consensus_14441#5 ------------------------------------------------------------
consensus_14441#4 ------------------------------------------------------------
consensus_14441#0 GTCAATTAGCTTACTGCGGTTCGGGAGGCACATGCAAGAATGGGACAGGCCTCAGCTACC 720
consensus_14441#1 ------------------------------------------------------------
consensus_14441#2 ------------------------------ATGGACTGAAGGAGTAGAAAACACACACAC 30
consensus_14441#3 -------------------------------------------------------TTTTT 5
consensus_14441#5 ------------------------------------------------------------
consensus_14441#4 ------------------------------------------------------------
consensus_14441#0 ACTGCGAGTGCAGTGAGGGTTTCAGTAACCTTCTGAACATCACCACAATGCCATGTTTTC 780
consensus_14441#1 -----GAAGCGAGACAATCTGCTGCTGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCAA 55
consensus_14441#2 CCAGAGAAGCGAGACAATCTGCTGCTGCTAGTGGCGGACAGAGTCCAAGAAGGAATCCAA 90
consensus_14441#3 AAAATTGTTCAATCGGGGGGGATTGGGCAAGCAAAGGGGTTTTTCCATCCTCAAAATTTT 65
consensus_14441#5 ------------------------------------------------------------
consensus_14441#4 ----TTGTTCAATGGGTGGGGATTGCGCAAGAATAGGGTTTTTTCCATCCTCAAATTTTT 56
consensus_14441#0 AGAATTGTTCAATCGGTGCGGATTGCGCAAGCATAGGGCTCTCTCCATCCTCAAACTCTT 840
consensus_14441#1 GAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGGCGGCGGCGCG 115
consensus_14441#2 GAATCGAGAGAAATCGAGATGCTCGCGGCGAGGACACGATTCGCCGGCGGCGGCGGCGCG 150
consensus_14441#3 CCAGTTTTCCTGCCCCCCCGGGATTTGGTGGGAAATTTAACAAAGGGGGGATTTCCCAAA 125
consensus_14441#5 ------------------------------------------------------------
consensus_14441#4 CCAGTTTTCTGGCCCCCCGGGGTTTTGTGGGCATATTTAACAAGGGGGGGATTTCACATA 116
consensus_14441#0 CCAGTTCTCCTGCACCACCGGGATCTGCTGGCATATCTAACAATGGGGCGATTTCACATA 900
consensus_14441#1 GCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCCACCAGGGCGGCCGTCGCCGAC 175
consensus_14441#2 GCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCCACCAGGGCGGCCGTCGCCGAC 210
consensus_14441#3 AAATTTTACTTCCCCTGCTGATT--TTGGGGCCCCTGAAGGTTTGTCAGGGTATATAAAT 183
consensus_14441#5 ------------------------------------------------------------
consensus_14441#4 AAATTTTATTTCCCTTGCTGATT--TGGGGCTCACTAATGGTTTGTCAGGCTATATAAAT 174
consensus_14441#0 AAATTCTACTTCCCTTGCTGATT--TTGGGCTCACTGATGGTCTGTCAGGCTATATAGAT 958
consensus_14441#1 GATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACG 235
consensus_14441#2 GATTTCTTCTCCCCTCTCAGCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACG 270
consensus_14441#3 AAAGAATGGGGCAAACGTAGGACATTTTAGGTAAATTGTTTTTGCCCCGGACAGGAAAAA 243
consensus_14441#5 ---------------------------------------------CCCGGCCAGGATAAA 15
consensus_14441#4 AGAGAATGGGGCATAGGTAGTCCATTTGAGTTAGATTGTTTTTCCCCCGGACAGGATAAA 234
consensus_14441#0 AGAGAATGGAGCATACGTAGTACATTTGAGCTAGATTGTTTCTGCCACGGACAGGATAGA 1018
consensus_14441#1 GTGGCGTGCGGGATGGGGAACTGCTCGGCGGCGTCTGGCGTGCCTGGTGTCAGGGTGCGA 295
consensus_14441#2 GTGGCGTGCGGGAAGGGGAACTGCACGGCGGCGTC-GGGGTTCCCGGGGTACAGGTGCGA 329
* ** *
consensus_14441#3 ACAGTTAGCCTGT---TAAAAAAGGACCCCCTTTGGGAA---GTTTTAAGGGTTGTCCAG 297
consensus_14441#5 CCAGTTAGCCTGT---TAAAAATGTCCCCCTTTTGGGAT---GTTTAAAGTGTTGTCCAG 69
consensus_14441#4 CCAGTTACCCTGT---TAAAAATGTCCCCCTTTTGGAAT---GTTTAAAGTGTTGTCCAG 288
consensus_14441#0 GCAGTTAGCCTGT---TAGAGATGTACACCTTTTGGGAT---GTTTGAAGTGTTGTCCAG 1072
consensus_14441#1 GTGCGGAGCCTGGGTGTGAGCTTGGTGAGCGTGGGCGAGCTGGCGCGGATGCCTGCCCTG 355
consensus_14441#2 GTGCG-AGCCTGGGTGGAAGCA-GATGCACGTCGGCGACCAGGC-CAGCTTCCTGCCCTG 386
* **** * * * * * * ** ** *
consensus_14441#3 GGTCCCCGGTAAGGTTTTTTTATTTTGGGGGAGATTTGGTCCCAT---------TCATGT 348
consensus_14441#5 GGTCCCCGTTAAGGTTTTTTTATTCTGGGTGAGATTTGATCCCAT---------TCATGT 120
consensus_14441#4 GGTCCCCGTAAGGGTTTTTTTATTCGGGGTGAGATTTGATCCCAT---------TCATGT 339
consensus_14441#0 TGTCCACGTTATGGTTCTTTTATTCTGTGTGAGATTTGATCACAT---------TCATGT 1123
consensus_14441#1 CGTGAGGTCGGAGTGTGCGGTGGACCGCGCGTGT-CTGGCAGTATGGCTGCAGCTCGTG- 413
consensus_14441#2 CGTCATCCCCAACTGTTCCATTGACCGTGCATGTTCTAACACTATAGCACCAGCACCTGC 446
** * * * * * * ** * **
consensus_14441#3 GAATTAAAAAGGAAAAAACTGTTTTTG-----TGAAAAACTGAAAAAAGGGGGGTTT-TA 402
consensus_14441#5 GAATTAAAATGGAATAAACTGTTTTTG-----TGAATAACTGAATAAAGGGATGTTTATA 175
consensus_14441#4 GAATTAAAAGGGAATAAACGGTTTTTG-----TGAAAAATTAAATAAAGGGATGTTTATA 394
consensus_14441#0 GAATTAAAATGGAATAAACTGTCTCTG-----TGAATAACTGAATAAAGGGATGTTTATA 1178
consensus_14441#1 GCGTCTGGGGAGGCGCGGGAGTTGCGGG-TGCTAGCGGACTGCGGGCA-TGGGGTTACTG 471
consensus_14441#2 GCCTTTACCATCACCCAAAAATTTCTCCCTCCCAACAGACCCCTGTCAATTAGCTTACTG 506
* * * * * ** *
consensus_14441#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------- 443
consensus_14441#5 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------- 224
consensus_14441#4 TGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------------- 434
consensus_14441#0 TGGGCAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------------- 1209
consensus_14441#1 CGGATGTGACGGCGTCTG---GAGTGGGACTGGCG--GAGTGCCACTGGAGGGGCGGTGG 526
consensus_14441#2 CGGTTCGGGAGGCACATGCAAGAATGGGACAGGCCTCAGCTACCACTGCGAGTGCAGTGA 566
* *
consensus_14441#3 ------------------------------------------------------------
consensus_14441#5 ------------------------------------------------------------
consensus_14441#4 ------------------------------------------------------------
consensus_14441#0 ------------------------------------------------------------
consensus_14441#1 TGGGGACTTGTGGGACTGGCGCGGCTGGTGGGATGTGG-GTGGGAGGAGTGGTCGGGTTG 585
consensus_14441#2 GGGTTTTCAGTAACCTTCTGAACATCACCACAATGCCATGTTTTCAGAAT---------- 616
consensus_14441#3 ------------------------------------------------------------
consensus_14441#5 ------------------------------------------------------------
consensus_14441#4 ------------------------------------------------------------
consensus_14441#0 ------------------------------------------------------------
consensus_14441#1 GCGGTGGGGGGAACTCTGAGTTGTTTGGCGGGGGGGGGAGCGTGGTCACGTGGAGTGCGG 645
consensus_14441#2 ------------------------------------------------------------
consensus_14441#3 ------------------------------------------------------------
consensus_14441#5 ------------------------------------------------------------
consensus_14441#4 ------------------------------------------------------------
consensus_14441#0 ------------------------------------------------------------
consensus_14441#1 TGAGGTGCTCGTGGAGTGGGGGTGGGTGGCGTGGGTGTTGGCGAGGGGCTGGGGATGGGC 705
consensus_14441#2 ------------------------------------------------------------
consensus_14441#3 ------------------------------------------------------------
consensus_14441#5 ------------------------------------------------------------
consensus_14441#4 ------------------------------------------------------------
consensus_14441#0 ------------------------------------------------------------
consensus_14441#1 GGTGTGAATGTGAGTGGGCGAGGGTGCGAGAGGGGTGAAGTAGCGGTGTGGAGATGTGTG 765
consensus_14441#2 ------------------------------------------------------------
consensus_14441#3 ------------------------------------------------------------
consensus_14441#5 ------------------------------------------------------------
consensus_14441#4 ------------------------------------------------------------
consensus_14441#0 ------------------------------------------------------------
consensus_14441#1 ACGGGCGGGTGGTGTCGTCGGTGCGGTTGGTGGTGCGTTGGGCGGTGGATGGGCTGGCGT 825
consensus_14441#2 ------------------------------------------------------------
consensus_14441#3 ----------------
consensus_14441#5 ----------------
consensus_14441#4 ----------------
consensus_14441#0 ----------------
consensus_14441#1 GTAGCTGCATGTGGTG 841
consensus_14441#2 ----------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||