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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14444#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 975 fasta sequence
[CGCACCGCCCCGTTCATCTCTCGCCTCCGGCTCCTCCGAACCGCCGCCGCCCTCTCCCCGTTCTCGTCCTCCGCGCCGCCGCGGCACAGCCCCCGCATCCTCCGCGCTATCCCTGTCGGTGCGCCTCACCCGCCGCGCGTCTCCGCAGCCGTCTCGCCGCTGGTCCGTCCGGTCGCCGCCGGGTTCGCGCTGTTCAGCATGGCCACCGCCGCCTCCTCCGCCGCATCCGTCCACGACTTCACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTTCAAGGGGAAAGTCCTCCTTATCGTCAATGTTGCATCTCAGTGTGGCTTGACCAATTCCAACTACACGGAGCTGAGCCAGTTGTATGAGAAGTACAAGGACCAGGGTTTTGAGATCCTTGCTTTCCCATGCAACCAGTTTGGTGGACAGGAACCTGGCACTAA-TGAGGAGATTGTCCAATTTGCTTGCACCCGCTT-CAAGG-CCGAGTATCCAATTTTTGATAAGGTTGATGTTAATGGT-GACAACACTGCACCCATCT-ACAAGTTTCTGAAGTCCAGCAAAGGTGGTCTTTTCGGTGACAATAT-CAAATGGAACTTCTCCAAGTTCTTGGTCGACAAAGAGGGGCGTGTTGTGGAGCGCTATGCGCCA-ACTACTTCTCCACTCAGCATGGAGAAGGACATCAAGAAGCTGCTTGGAAGTTCTTAAAACCTTACCGCCGGCGCCACCAGATGCACTGCTGCGTTGCATTGAGCACTT-GGAACTTCCAATAATGTTGTAATAAAACTGTGCTTGGAATTGCTGTATTTTCATTTGCGTAGCCCTGCTGTGTAATGTATAAAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACTTTGCCCCTTTATTGAAATATAATCTCCTGTATCTGTGTTCGTTATTGAGACCTGCGACTGCGATGAGCAAGTTTTGACGTGTAACGTGTACTCGTT]
[+] EMBL AK058456 [CGCACCGCCCCGTTCATCTCTCGCCTCCGGCTCCTCCGAACCGCCGCCGCCCTCTCCCCGTTCTCGTCCTCCGCGCCGCCGCGGCACAGCCCCCGCATCCTCCGCGCTATCCCTGTCGGTGCGCCTCACCCGCCGCGCGTCTCCGCAGCCGTCTCGCCGCTGGTCCGTCCGGTCGCCGCCGGGTTCGCGCTGTTCAGCATGGCCACCGCCGCCTCCTCCGCCGCATCCGTCCACGACTTCACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTTCAAGGGGAAAGTCCTCCTTATCGTCAATGTTGCATCTCAGTGTGGCTTGACCAATTCCAACTACACGGAGCTGAGCCAGTTGTATGAGAAGTACAAGGACCAGGGTTTTGAGATCCTTGCTTTCCCATGCAACCAGTTTGGTGGACAGGAACCTGGCACTAA TGAGGAGATTGTCCAATTTGCTTGCACCCGCTT CAAGG CCGAGTATCCAATTTTTGATAAGGTTGATGTTAATGGT GACAACACTGCACCCATCT ACAAGTTTCTGAAGTCCAGCAAAGGTGGTCTTTTCGGTGACAATAT CAAATGGAACTTCTCCAAGTTCTTGGTCGACAAAGAGGGGCGTGTTGTGGAGCGCTATGCGCCA ACTACTTCTCCACTCAGCATGGAGAAGGACATCAAGAAGCTGCTTGGAAGTTCTTAAAACCTTACCGCCGGCGCCACCAGATGCACTGCTGCGTTGCATTGAGCACTT GGAACTTCCAATAATGTTGTAATAAAACTGTGCTTGGAATTGCTGTATTTTCATTTGCGTAGCCCTGCTGTGTAATGTATAAAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACTTTGCCCCTTTATTGAAATATTATCTCCTGTATCTGTGTTCGTTATTGAGACCTGCGACTGCGATGAGCAAGTTTTGACGTGTAACGTGTACTCGTT]
[+] EMBL AK105165 [ CCCCGTTCATCTCTCGCCTCCGGCTCCTCCGAACCGCCGCCGCCCTCTCCCCGTTCTCGTCCTCCGCGCCGCCGCGGCACAGCCCCCGCATCCTCCGCGCTATCCCTGTCGGTGCGCCTCACCCGCCGCGCGTCTCCGCAGCCGTCTCGCCGCTGGTCCGTCCGGTCGCCGCCGGGTTCGCGCTGTTCAGCATGGCCACCGCCGCCTCCTCCGCCGCATCCGTCCACGACTTCACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTTCAAGGGGAAAGTCCTCCTTATCGTCAATGTTGCATCTCAGTGTGGCTTGACCAATTCCAACTACACGGAGCTGAGCCAGTTGTATGAGAAGTACAAGGACCAGGGTTTTGAGATCCTTGCTTTCCCATGCAACCAGTTTGGTGGACAGGAACCTGGCACTAA TGAGGAGATTGTCCAATTTGCTTGCACCCGCTT CAAGG CCGAGTATCCAATTTTTGATAAGGTTGATGTTAATGGT GACAACACTGCACCCATCT ACAAGTTTCTGAAGTCCAGCAAAGGTGGTCTTTTCGGTGACAATAT CAAATGGAACTTCTCCAAGTTCTTGGTCGACAAAGAGGGGCGTGTTGTGGAGCGCTATGCGCCA ACTACTTCTCCACTCAGCATGGAGAAGGACATCAAGAAGCTGCTTGGAAGTTCTTAAAACCTTACCGCCGGCGCCACCAGATGCACTGCTGCGTTGCATTGAGCACTT GGAACTTCCAATAATGTTGTAATAAAACTGTGCTTGGAATTGCTGTATTTTCATTTGCGTAGCCCTGCTGTGTAATGTATAAAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACTTTGCCCCTTTATTGAAATAT ]
[+] EMBL CF306402 [ GCCCCCGCATCCTCCGCGCTATCCCTGTCGGTGCGCCTCACCCGCCGCGCGTCTCCGCAGCCGTCTCGCCGCTGGTCCGTCCGGTCGCCGCCGGGTTCGCGCTGTTCAGCATGGCCACCGCCGCCTCCTCCGCCGCATCCGTCCACGACTTCACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTTCAAGGGGAAAGTCCTCCTTATCGTCAATGTTGCATCTCAGTGTGGCTTGACCAATTCCAACTACACGGAGCTGAGCCAGTTGTATGAGAAGTACAAGGACCAGGGTTTTGAGATCCTTGCTTTCCCATGCAACCAGTTTGGTGGACAGGAACCTGGCACTAA TGAGGAGATTGTCCAATTTGCTTGCACCCGCTT CAAGG CCGAGTATCCAATTTTTGATAAGGTTGATGTTAATGGT GACAACACTGCACCCATCT ACAAGTTTCTGAAGTCCAGCAAAGGTGGTCTTTTCGGTGACAATAT CAAATGGAACTTCTCCAAGTTCTTGGTCGACAAAGAGGGGCGTGTTGTGGAGCGCTATGCGCCA ACTACTTCTCCACTCAGCATGGAGAAGGACATCAAGAAGCTGCTTGGAAGTTCTTAAAACCTTACCGCCGGCGCCACCAGATGCACTGCTGCGTTGCATTGAGC ]
[+] EMBL AU197470 [ ACTACACGGAGCTGAGCCAGTTGTATGAGAAGTACAAGGACCAGGGTTTTGAGATCCTTGCTTTCCCATGCAACCAGTTTGGTGGACAGGAACCTGGCACTAATTGAGGAGATTGTCCAATTTGCTTGCACCCGNTT CAAGGNCGGAGTATCCAATTTTTGNTAAGGTTGATGTTAATGGTGGACAACANTGCACCCATCT ACAAGTTTCTGNAGTCCAGCAAAGGTGGTCTTTTCGGTGACAATAT CAAATGGAACTTCTCCAAGTTCTTGGTCGACAAAGAGGGGCGTATTGTGGAGCGCTATGC CCA ACTACTTCTCCACTCAGCATGGAGAAGG CATCAAGAAGCTGCTTTGAAGTTCTTAAAACCTTACCGCCGGCGCCANCAGATGCACTGCTGCGTTGCATTGAGCACTT GG ACTTCCANTAATGTTGTAATAAAA ]
[+] EMBL AU070926 [ CAGGAACCTGGCACTAA TGAGGAGATTGTCCAATTTGCTTGCACCCGCTT CAAGG CCGAGTATCCAATTTTTGATAAGGTTGATGTTAATGGT GACAACACTGCACCCATCT ACAAGTTTCTGAAGTCCAGCAAAGGTGGTCTTTTCGGTGACAATAT CAAATGGAACTTCTCCAAGTTCTTGGTCGACAAAGAGGGGCGTGTTGTGGAGCGCTATGCGCCAGACTACTTCTCCACTCAGCATGGAGAAGGACATCAAGAAGCTGCTTGGAAGTTCTTAAAACCTTACCGCCGGCGCCACCAGATGCACTGCTGCGTTGCATTGAGCACTTGGGAACTTCCAATAATGTTGTAATAAAACTGTGCTTG ]
[+] EMBL AU163733 [ CCAATTTGCTTGCACCCGCTTCCAAGG CCGAGTATCCAATTTTTGATAAGGTTGATGTTAATGGT GACAACACTGCACCCATCTAACAAGTTTCTGAAGTCCAGCAAAGGTGGTCTTTTCGGTGACAATATCCAAATGGAACTTCTCCAAGTTCTTGGTCGACAAAGAGGGGCGTGTTGTGGAGCGCTATGCGCCA ACTACTTCTCCACTCAGCATGGAGAAGGACATCAAGAAGCTGCTTGGAAGTTCTTAAAACCTTACCGCCGGCGCCACCAGATGCACTGCTGCGTTGCATTGAGCACTT GGAACTTCCAATAATGTTGTAATAAAACTGTGCTTGGAATTGCTGTATTTTCATTTGCGTAGCCCTGCTGTGTAATGTATAAAGTATTAACGTGTAATGAAATTGGCTTACTGNATCANTTTGCCCCTTTATTGAAAaana ]
[+] EMBL AU198223 [ CCCGCTT CAAGG CCGAGTATCCAATTTTTGATAAGGTTGATGTTAATGGT GACAACNCTGCACCCATNT ACAAGTTTTTGAAGTCCAGCAAAGGTGGTCTTTTCGGTGACAATAT CAAATGGAACTTNTCCAAGTTNTTGGTCGACAAAGAGGGGCGTGTTGTGGAGCGCTATGCGCCA ACTACTTNTCCACTCAGCATGGAGAAGGACATCAAGAAGCTGCTTGGAAGTTNTTAAAACCTTACCGCCGGCGCCACCAGATGCACTGCTGCGTTGCATTGAGCACTT GGAACTTCCAATAATGTTGTAATAAAACTGTGCTTGGAATTGCTGTATTTTCATTTGCGTAGCCCTGCTGTGTAATGTATAAAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACTTTGCCCCTTTATTGAAAaaaa ]
consensusID : consensus_14444#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 944 fasta sequence
[CGGCTCCTCCGAACCGCCGCCGCCCTCTCCCCGTTCTCGTCCTCCGCGCCGCCGCCCTCTCCCCGTTCTCGTCCACAGCCCCCGCATCCTCCGCGCTAGCCCTGTCGGTGCGCCTCACCCGCCGCGCGTCTCCGCAGCCGTCTCGCCGCTGGTCCTTCCGGTCGCCGCCGGGTTCGCGCTGTTCAGCATGGCCACCGCCGCCTCCTCCGCCGCATCCGTCCACGACTTCACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTACAAGGGGAAAGTCCTCCTTATCGTCAATGTTGCATCTCAGTGTGGCTTGACCAATTCCAACTACACGGAGCTGAGCCAGTTGTATGAGAAGTACAAGGACCAGGGTTTTGAGATCCTTGCTTTCCCATGCAACCAGTTTGGTGGACAGGAACCTGGCACTAATGAGGAGATTGTCCAATTTGCTTGCACCCGCTTCAAGGCCGAGTATCCAATTTTTGATAAGGTTGATGTTAATGGTGACAACACTGCACCC-ATCTACAAGTTTCTGAAGTCCAGCAAAGGTGGGTCTTTTCGGTGACAATATCAAATGGAACTTCTCC--AGGTCTTGGTCGACAAAGAGGGGCGTGTTGTGGAGCGCTATGCGCCAACTACTTCTCCACTCAGCATGGAGAAGGACATCAAGAAGCTGCTTGGAAGTTCTTAAAACCTTACCGCCGGCGCCACCAGATGCACTGCTGCGTTGCATTGAGCACTTGGAACTTCCAATAATGTTGTAATAAAACTGTGCTTGGAATTGCTGTATTTTCATTTGCGTAGCCCTGCTGTGTAATGTATAAAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACTTTGCCCCTTTATTGAAATATTATCTCCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BF430853 [CGGCTCCTCCGAACCGCCGCCGCCCTCTCCCCGTTCTCGTCCTCCGCGCCGCCGCCCTCTCCCCGTTCTCGTCCACAGCCCCCGCATCCTCCGCGCTAGCCCTGTCGGTGCGCCTCACCCGCCGCGCGTCTCCGCAGCCGTCTCGCCGCTGGTCCTTCCGGTCGCCGCCGGGTTCGCGCTGTTCAGCATGGCCACCGCCGCCTCCTCCGCCGCATCCGTCCACGACTTCACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTACAAGGGGAAAGTCCTCCTTATCGTCAATGTTGCATCTCAGTGTGGCTTGACCAATTCCAACTACACGGAGCTGAGCCAGTTGTATGAGAAGTACAAGGACCAGGGTTTTGAGATCCTTGCTTTCCCATGCAACCAGTTTGGTGGACAGGAACCTGGCACTAATGAGGAGATTGTCCAATTTGCTTGCACCCGCTTCAAGGCCGAGTATCCAATTTTTGATAAGGTTGATGTTAATGGTGACAACACTGCACCC ATCTACAAGTTTCTGAAGTCCAGCAAAGGTGGGTCTTTTCGGTGACAATATCAAATGGAACTTCTCC AGGTCTTGGTCGACAAAGAGGGGCGTGTTGTGGAGCGCTATGCGCCAACTACTTCTCCACTCAGCATGGAGAAGGACATCAAGAA ]
[+] EMBL AU095588 [ ATGNTAATGGTGACAACACTGNACCCAATCTACAAGTTTCTGAAGTCCAGCAAAGGT GGTCTTTTCGGTGACAATATCAAATGGAACTTCTCCCAAGTTCTTGGTCGACAAAGAGGGGCGTGTTGTGGAGCGCTATGCGCCAACTACTTCTCCACTCAGCATGGAGAAGGACATCAAGAAGCTGCTTGGAAGTTCTTAAAACCTTACCGCCGGCGCCACCAGATGCACTGCTGCGTTGCATTGAGCACTTGGAACTTCCAATAATGTTGTAATAAAACTGTGCTTGGAATTGCTGTATTTTCATTTGCGTAGCCCTGCTGTGTAATGTATAAAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACTTTGCCCCTTTATTGAAATATTATCTCCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL CB681979 [ TGTGCAGCGCTATGCGCCAACTACTTCTCCACTCAGCATGGAGAAGGACATCAAGAAGCTGCTTGGAAGTTCTTAAAACCTTACCGCCGGCGCCACCAGATGCACTGCTGCGTTGCATTGAGCACTTGGAACTTCCAATAATGTTGTAATAAAACTGTGCTTGGAATTGCTGTATTTTCATTTGCGTAGCCCTGCTGTGTAATGTATAAAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACTTTGCCCCTTTATTGAAATATTATCTCCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL AU225245 [ GAAGGACATCAAGAAGCTGCTTGGAAGTTCTTAAAACCTTACCGCCGGCGCCACCAGATGCACTGCTGCGTTGCATTGAGCACTTGGAACTTCCAATAATGTTGTAATAAAACTGTGCTTGGAATTGCTGTATTTTCATTTGCGTAGCCCTGCTGTGTAATGTATAAAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACTTTGCCCCTTTATTGAAATATTATCTCCTGTAAAAAAAAAAAAAgcggc ]
[+] EMBL AU058142 [ AGAAGCTGCTTGGAAGTTCTTAAAACCTTACCGCCGGCGCCACCAGATGCACTGCTGCGTTGCATTGAGCACTTGGAACTTCCAATAATGTTGTAATAAAACTGTGCTTGGAATTGCTGTATTTTCATTTGCGTAG CCTGCTGTGTAATGTATAAAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACTTTGCCCCTTTATTGAAATATTATCTCCTGTAAAAAAAA ]
consensusID : consensus_14444#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 910 fasta sequence
[TCATTTATCGCCTCCGGCTCCTCCGAACCGACGGCGCTCTCTTCCCGTTCTAGTGCTCGGCGCCGACGCGGCACAGCCTCCGCATTCTCCGCGCTATCCCTGTCGGTGCGCCTCACCCGCCGCGCGTATCCGCAGCCGTCTCGCCGCTGGTCCGTCCGGTCGCCGCCGGGTTCGCGCTGTTCAGCATGGCCACCGCCGCCTCCTCCGCCGCATACGTCCACGACTTCACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTTCAAGGGGAAAGTCCTCCTTATCGTCAATGTTGCATCTCAGTGTGGCTTGACCAATTCCAACTACACGGAGCTGAGCCAGTTGTATGAGAAGTACAAGGACCAGGGTTTTGAGATCCTTGCTTTCCCATGCAACCAGTTTGGTGGACAGGAACCTGGCACTAATGAGGAGATTGTCCAATTTGCTAGCACCCGCTTCAAGGCCGAGTATCCAATGTTTGATAAGGTTGATGTTAATGGTGACAACACTGCACCCATCTACAAGTTTCTGAAGTCCAGCATAAGTGGTCTTGTCGGTGACAATATCACATGGAACTTCTCCAAGTTCTAGGTCGACAAAGATGTGCGTGTTGAGAACGCTATGACGCACTACTACTCCACTAGCATGGAGAAGACATCGAGAGCTGCTGGAGTGATAGAGCTTACGGCAGTGCACANATGACTGGTGATGGAATGACACTTGACCTCCATTAGATATTGAACTGGCTGGAATGTGGTATTCTATGGATGCGTATGTGGATGAACAGGATACGTAGAGAAGCGTAGGAGACATATCCTATTNACATAGAGATATATATATGATGTGAGTTGTATATACNGTATATACAGTATACATGGTGACGATGATGCGCGTATCATGTC]
[+] EMBL AW155043 [TCATTTATCGCCTCCGGCTCCTCCGAACCGACGGCGCTCTCTTCCCGTTCTAGTGCTCGGCGCCGACGCGGCACAGCCTCCGCATTCTCCGCGCTATCCCTGTCGGTGCGCCTCACCCGCCGCGCGTATCCGCAGCCGTCTCGCCGCTGGTCCGTCCGGTCGCCGCCGGGTTCGCGCTGTTCAGCATGGCCACCGCCGCCTCCTCCGCCGCATACGTCCACGACTTCACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTTCAAGGGGAAAGTCCTCCTTATCGTCAATGTTGCATCTCAGTGTGGCTTGACCAATTCCAACTACACGGAGCTGAGCCAGTTGTATGAGAAGTACAAGGACCAGGGTTTTGAGATCCTTGCTTTCCCATGCAACCAGTTTGGTGGACAGGAACCTGGCACTAATGAGGAGATTGTCCAATTTGCTAGCACCCGCTTCAAGGCCGAGTATCCAATGTTTGATAAGGTTGATGTTAATGGTGACAACACTGCACCCATCTACAAGTTTCTGAAGTCCAGCATAAGTGGTCTTGTCGGTGACAATATCACATGGAACTTCTCCAAGTTCTAGGTCGACAAAGATGTGCGTGTTGAGAACGCTATGACGCACTACTACTCCACTAGCATGGAGAAGACATCGAGAGCTGCTGGAGTGATAGAGCTTACGGCAGTGCACANATGACTGGTGATGGAATGACACTTGACCTCCATTAGATATTGAACTGGCTGGAATGTGGTATTCTATGGATGCGTATGTGGATGAACAGGATACGTAGAGAAGCGTAGGAGACATATCCTATTNACATAGAGATATATATATGATGTGAGTTGTATATACNGTATATACAGTATACATGGTGACGATGATGCGCGTATCATGTC]
consensusID : consensus_14444#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 534 fasta sequence
[TCGCCTCCGGCTCCTCCGAACCGCCGCCGCCCTCTCCCCGTTCTCGTCCTCCGCGCCGCCGCGGCACAGCCCCCGCATCCTCCGCGCTATCCCTGTCGGTGCGCCTCACCCGCCGCGCGTCTCCGCAGCCGTCTCGCCGCTGGTCCGTCCGGTCGCCGCCGGGTTCGCGCTGTTCAGCATGGCCACCGCCGCCTCCTCCGCCGCATCCGTCCACGACTTCACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTTCAAGGGGAAAGTCCTCCTTATCGTCAATGTTGCATCTCAGTGTGGCTTGACCAATTCCAACTACACGGAGCTGA-GCCAGTTGTATGA-GAAGTACAAGGACCAGGGTTTTGAGATCCTTGCTTTCCCATGCAACCAGTTTGGTGGACAGGAACCTGGCACTAATGAGGAGATTGTCCAATTTGCTTGCACCCGCTTCAAGGCCGAGTATCCNATTTTTGATAAGGTTGATGTTAATGGTGACAACACTGCACCCATCTACCTTATCAAAAA]
[+] EMBL CA754205 [TCGCCTCCGGCTCCTCCGAACCGCCGCCGCCCTCTCCCCGTTCTCGTCCTCCGCGCCGCCGCGGCACAGCCCCCGCATCCTCCGCGCTATCCCTGTCGGTGCGCCTCACCCGCCGCGCGTCTCCGCAGCCGTCTCGCCGCTGGTCCGTCCGGTCGCCGCCGGGTTCGCGCTGTTCAGCATGGCCACCGCCGCCTCCTCCGCCGCATCCGTCCACGACTTCACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTTCAAGGGGAAAGTCCTCCTTATCGTCAATGTTGCATCTCAGTGTGGCTTGACCAATTCCAACTACACGGAGCTGA GCCAGTTGTATGA GAAGTACAAGGACCAGGGTTTTGAGATCCTTGCTTTCCCATGCAACCAGTTTGGTGGACAGGAACCTGGCACTAATGAGGAGATTGTCCAATTTGCTTGCACCCGCTTCAAGGCCGAGTATCCNATTTTTGATAAGGTTGATGTTAATGGTGACAACACTGCACCCATCTACCTTATCAAAAA]
[+] EMBL OSC252 [ CCGGCTCCTCCGAACCGCCGCCGCCCTCTCCCCGTTCTCGTCCTCCGCGCCGCCG GGCACAGCCCCCGCATCCTCCGCGCTATCCCTGTCGGTGCGCCTCACCCGCCGCGCGTCTCCGCAGCCGTCTCGCCGCTGGTCCGTCCGGTCGCCGCCGGGTTCGCGCTGTTCAGCATGGCCACCGNCGCCTCCTCCGCCGCATCCGTCCACGACTTCACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTTCAAGGGGAAAGTCCTNCTTATCGTCAATGTTGCATCTCAGTGTGGNTTGACCAATTCCAACTACANGGAGCTTAGGCCAGTTGTATTAGGAAGTACAAGGACCAGGGTTTTTAGATCCTTGTTTTTCCATG AAACAGTTTGGTGGANAGGAc ]
consensusID : consensus_14444#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 189 fasta sequence
[CGGCGACCACCCAGNATGCNACTCCCTGCGTNTGCATTTGAGCCACTTGGAACTNCCCAATAANTGTTGNNAATAAAACTGTGCTTGGAATTGCTGTATTTNCATTTGCGTAGCCCCTGCTGTGTAATGTATAAAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACTTTGCCCCTTTATTGAAA]
[+] EMBL D42891 [CGGCGACCACCCAGNATGCNACTCCCTGCGTNTGCATTTGAGCCACTTGGAACTNCCCAATAANTGTTGNNAATAAAACTGTGCTTGGAATTGCTGTATTTNCATTTGCGTAGCCCCTGCTGTGTAATGTATAAAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACTTTGCCCCTTTATTGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14444#1 -----------CGGCTCCTCCGAACCGCCGCCGCCCTCTCCCCGTTCTCGTCCTCCGCGC 49
consensus_14444#4 ------------------------------------------------------------
consensus_14444#0 CGCACCGCCCCGTTCATCTCTCGCCTCCGGCTCCTCCGAACCGCCGCCGCCCTCTCCCCG 60
consensus_14444#2 ------------------------------------------------------------
consensus_14444#3 ------------------------------------------------------------
consensus_14444#1 CGCCGCCCTCTCCCCGTTCTCGTCCACAGCCCCCGCATCCTCCGCGCTAGCCCTGTCGGT 109
consensus_14444#4 ------------------------------------------------------------
consensus_14444#0 TTCTCGTCCTCCGCGCCGCCGCGGCACAGCCCCCGCATCCTCCGCGCTATCCCTGTCGGT 120
consensus_14444#2 ------------------------------------------------------------
consensus_14444#3 ------------------------------------------------------------
consensus_14444#1 GCGCCTCACCCGCCGCGCGTCTCCGCAGCCGTCTCGCCGCTGGTCCTTCCGGTCGCCGCC 169
consensus_14444#4 ------------------------------------------------------------
consensus_14444#0 GCGCCTCACCCGCCGCGCGTCTCCGCAGCCGTCTCGCCGCTGGTCCGTCCGGTCGCCGCC 180
consensus_14444#2 ------------------------------------------------------------
consensus_14444#3 ------------------------------------------------------------
consensus_14444#1 GGGTTCGCGCTGTTCAGCATGGCCACCGCCGCCTCCTCCGCCGCATCCGTCCACGACTTC 229
consensus_14444#4 ------------------------------------------------------------
consensus_14444#0 GGGTTCGCGCTGTTCAGCATGGCCACCGCCGCCTCCTCCGCCGCATCCGTCCACGACTTC 240
consensus_14444#2 ------------------------------------------------------------
consensus_14444#3 ------------------------------------------------------------
consensus_14444#1 ACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTACAAGGGGAAAGTCCTC 289
consensus_14444#4 ------------------------------------------------------------
consensus_14444#0 ACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTTCAAGGGGAAAGTCCTC 300
consensus_14444#2 ------------------------------------------------------------
consensus_14444#3 ------------------------------------------------------------
consensus_14444#1 CTTATCGTCAATGTTGCATCTCAGTGTGGCTTGACCAATTCCAACTACACGGAGCTGAGC 349
consensus_14444#4 ------------------------------------------------------------
consensus_14444#0 CTTATCGTCAATGTTGCATCTCAGTGTGGCTTGACCAATTCCAACTACACGGAGCTGAGC 360
consensus_14444#2 ------------------------------------------------------------
consensus_14444#3 ------------------------------------------------------------
consensus_14444#1 CAGTTGTATGAGAAGTACAAGGACCAGGGTTTTGAGATCCTTGCTTTCCCATGCAACCAG 409
consensus_14444#4 ------------------------------------------------------------
consensus_14444#0 CAGTTGTATGAGAAGTACAAGGACCAGGGTTTTGAGATCCTTGCTTTCCCATGCAACCAG 420
consensus_14444#2 ------------------------------------------------------------
consensus_14444#3 ------------------------------------------------------------
consensus_14444#1 TTTGGTGGACAGGAACCTGGCACTAATGAGGAGATTGTCCAATTTGCTTGCACCCGCTTC 469
consensus_14444#4 ------------------------------------------------------------
consensus_14444#0 TTTGGTGGACAGGAACCTGGCACTAATGAGGAGATTGTCCAATTTGCTTGCACCCGCTTC 480
consensus_14444#2 ------------------------------------------------------------
consensus_14444#3 ------------------------------------------------------------
consensus_14444#1 AAGGCCGAGTATCCAATTTTTGATAAGGTTGATGTTAATGGTGACAACACTGCACCCATC 529
consensus_14444#4 ------------------------------------------------------------
consensus_14444#0 AAGGCCGAGTATCCAATTTTTGATAAGGTTGATGTTAATGGTGACAACACTGCACCCATC 540
consensus_14444#2 ----------------TCATTTATCGCCTCCGGCTCCTCCGAACCGACGGCGCTCTCTTC 44
consensus_14444#3 -----------------------TCGCCTCCGGCTCCTCCGAACCGCCGCCGCCCTCTCC 37
consensus_14444#1 TACAAGTTTCTGAAGTCCAGCAAAGGTGGGTCTTTTCGGTGACAATATCAAATGGAACTT 589
consensus_14444#4 ------------------------------------------------------------
consensus_14444#0 TACAAGTTTCTGAAGTCCAGCAAAGGTGGTCTTTTCGGTGACAATATCAAATGGAACTTC 600
consensus_14444#2 CCGTTCTAGTGCTCGGCGCCGACGCGGCACAGCCTCCGCATTCTCCGCGCTATCCCTGTC 104
consensus_14444#3 CCGTTCTCGTCCTCCGCGCCGCCGCGGCACAGCCCCCGCATCCTCCGCGCTATCCCTGTC 97
consensus_14444#1 CTCCAGGTCTTGGTCGACAAAGAGGGGCGTGTTGTGGAGCGCTATGCGCCAACTACTTCT 649
consensus_14444#4 ------------------------------------------------------------
consensus_14444#0 TCCAAGTTCTTGGTCGACAAAGAGGGGCGTGTTGTGGAGCGCTATGCGCCAACTACTTCT 660
consensus_14444#2 GGTGCGCCTCACCCGCCGCGCGTATCCGCAGCCGTCTCGCCGCTGGTCCGTCCGGTCGCC 164
consensus_14444#3 GGTGCGCCTCACCCGCCGCGCGTCTCCGCAGCCGTCTCGCCGCTGGTCCGTCCGGTCGCC 157
consensus_14444#1 CCACTCAGCATGGAGAAGGACATCAAGAAGCTGCTTGGAAGTTCTTAAAACCTTACCGCC 709
consensus_14444#4 --------------------------------------------------------CGGC 4
consensus_14444#0 CCACTCAGCATGGAGAAGGACATCAAGAAGCTGCTTGGAAGTTCTTAAAACCTTACCGCC 720
consensus_14444#2 GCCGGGTTCGCGCTGTTCAGCATGGCCACCGCCGCCTCCTCCGCCGCATACGTCCACGAC 224
consensus_14444#3 GCCGGGTTCGCGCTGTTCAGCATGGCCACCGCCGCCTCCTCCGCCGCATCCGTCCACGAC 217
** *
consensus_14444#1 G--GCGCCACCAGATGCA--CTGCTGCG-TT-GCATT-GAGC-ACTT-----GGAACTTC 756
consensus_14444#4 G--ACCACCCAGNATGCNACTCCCTGCG-TNTGCATTTGAGCCACTT-----GGAACTNC 56
consensus_14444#0 G--GCGCCACCAGATGCA--CTGCTGCG-TT-GCATT-GAGC-ACTT-----GGAACTTC 767
consensus_14444#2 TTCACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTTCAAGGGGAAAGTC 284
consensus_14444#3 TTCACCGTCAAGGATGCAAGTGGCAAAGATGTGGACCTGAGCACCTTCAAGGGGAAAGTC 277
* **** * * * * * **** *** **** *
consensus_14444#1 C-AATAAT-GTTGTAA-TAAAACTGTGCTTGGAATTGCTGTATTTTCATTTGCGTAGCC- 812
consensus_14444#4 CCAATAANTGTTGNNAATAAAACTGTGCTTGGAATTGCTGTATTTNCATTTGCGTAGCC- 115
consensus_14444#0 C-AATAAT-GTTGTAA-TAAAACTGTGCTTGGAATTGCTGTATTTTCATTTGCGTAGCC- 823
consensus_14444#2 CTCCTTATCGTCAATGTTGCATCTCAGTGTGGCTTGACCAATTCCAACTACACGGAGCTG 344
consensus_14444#3 CTCCTTATCGTCAATGTTGCATCTCAGTGTGGCTTGACCAATTCCAACTACACGGAGCTG 337
* * * ** * * ** * *** * * * * ** ***
consensus_14444#1 --C-TGCTGTGTAATGTATA-AAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACT 868
consensus_14444#4 --CCTGCTGTGTAATGTATA-AAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACT 172
consensus_14444#0 --C-TGCTGTGTAATGTATA-AAGTATTAACGTGTAATGAAATTGGCTTACTGCATCACT 879
consensus_14444#2 AGCCAGTTGTATGAGAAGTACAAGGACCAGGGTTT--TGAGATC--CTTGCTTTCCCATG 400
consensus_14444#3 AGCCAGTTGTATGAGAAGTACAAGGACCAGGGTTT--TGAGATC--CTTGCTTTCCCATG 393
* * *** * * ** *** * * ** * *** ** *** ** **
consensus_14444#1 TTGCCCCTTTATTGAAATATTATCTCCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 928
consensus_14444#4 TTGCCCCTTTATTGAAA------------------------------------------- 189
consensus_14444#0 TTGCCCCTTTATTGAAATATAATCTCCTGTATCTGTGTTCGTTATTGAGACCTGCGACTG 939
consensus_14444#2 CAACCAGTTTGGTGGACAGGAACCTGGCACTAATGAGGAGATTGTCCAATTTGCTAGCAC 460
consensus_14444#3 CAACCAGTTTGGTGGACAGGAACCTGGCACTAATGAGGAGATTGTCCAATTTGCTTGCAC 453
** *** ** *
consensus_14444#1 AAAAAAAAAAAAAAAA-------------------------------------------- 944
consensus_14444#4 ------------------------------------------------------------
consensus_14444#0 CGATGAGCAAGTTTTGACGTGTAACGTGTACTCGTT------------------------ 975
consensus_14444#2 CCGCTTCAAGGCCGAGTATCCAATGTTTGATAAGGTTGATGTTAATGGTGACAACACTGC 520
consensus_14444#3 CCGCTTCAAGGCCGAGTATCCNATTTTTGATAAGGTTGATGTTAATGGTGACAACACTGC 513
consensus_14444#1 ------------------------------------------------------------
consensus_14444#4 ------------------------------------------------------------
consensus_14444#0 ------------------------------------------------------------
consensus_14444#2 ACCCATCTACAAGTTTCTGAAGTCCAGCATAAGTGGTCTTGTCGGTGACAATATCACATG 580
consensus_14444#3 ACCCATCTACCT-TATCAAAAA-------------------------------------- 534
consensus_14444#1 ------------------------------------------------------------
consensus_14444#4 ------------------------------------------------------------
consensus_14444#0 ------------------------------------------------------------
consensus_14444#2 GAACTTCTCCAAGTTCTAGGTCGACAAAGATGTGCGTGTTGAGAACGCTATGACGCACTA 640
consensus_14444#3 ------------------------------------------------------------
consensus_14444#1 ------------------------------------------------------------
consensus_14444#4 ------------------------------------------------------------
consensus_14444#0 ------------------------------------------------------------
consensus_14444#2 CTACTCCACTAGCATGGAGAAGACATCGAGAGCTGCTGGAGTGATAGAGCTTACGGCAGT 700
consensus_14444#3 ------------------------------------------------------------
consensus_14444#1 ------------------------------------------------------------
consensus_14444#4 ------------------------------------------------------------
consensus_14444#0 ------------------------------------------------------------
consensus_14444#2 GCACANATGACTGGTGATGGAATGACACTTGACCTCCATTAGATATTGAACTGGCTGGAA 760
consensus_14444#3 ------------------------------------------------------------
consensus_14444#1 ------------------------------------------------------------
consensus_14444#4 ------------------------------------------------------------
consensus_14444#0 ------------------------------------------------------------
consensus_14444#2 TGTGGTATTCTATGGATGCGTATGTGGATGAACAGGATACGTAGAGAAGCGTAGGAGACA 820
consensus_14444#3 ------------------------------------------------------------
consensus_14444#1 ------------------------------------------------------------
consensus_14444#4 ------------------------------------------------------------
consensus_14444#0 ------------------------------------------------------------
consensus_14444#2 TATCCTATTNACATAGAGATATATATATGATGTGAGTTGTATATACNGTATATACAGTAT 880
consensus_14444#3 ------------------------------------------------------------
consensus_14444#1 ------------------------------
consensus_14444#4 ------------------------------
consensus_14444#0 ------------------------------
consensus_14444#2 ACATGGTGACGATGATGCGCGTATCATGTC 910
consensus_14444#3 ------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||