cluster # 14445

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Oryza sativa
cluster # 14445 cluster # 14445 Sequences # 16 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14445#0 length = 1062 sequences # 11
consensus_14445#1 length = 1000 sequences # 2

consensus_14445#2 length = 588 sequences # 2
consensus_14445#3 length = 127 sequences # 1

consensusID : consensus_14445#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 1062
fasta sequence

                              [GAGTAGAAAAAATCCCACTGATCTCGTCATGGCAGCTCCAAATCCTTCTGCTACTATGGCGGCGGCGGCGGCGTCCACGCCGGCGAGGGCTTGGTGGCGGGCGGCTGCTCCGGCGAGTGCCTCAACTGCAGCTGTAAGCTGCTTCCGAGTTGGGGCCAAGAGCCTCACAGGGCTTCAGATGACAAGCACCCGCGCGAACAAAGTTCGGACAGTTCATGTCAAAAGCGGGGAGGCAGAAGGAAGTCCAAGCACAGAGAGCATCACCCGCGACGAGGAAACTCTGCAGCGTGACTTGCAAACAGCGATTCAGGAAGAAAACTATGCCCAGGCCGCGAAGCTCAGGGACGAGCTCCGAGTCCTCCAGGAGGACAGCAGGTCAGCAGTGCTGGCAGCGAATGCGCGGTTCTACAATGCCTTCAAGAAC-GGGGATCTTGTCGCAATGCACTCGGCATGGG-CGAAGGGCGACCATGTGT-A-CGTTGTTCATCCTTCGGCA-GGCCGGATATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATGGTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCATGTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGCAGCTGGGGAAGGCAGGTTGCGACCAATGTGTTTGAGAAGGTTGATGGCAAATGGTTCATTTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCTGTTTTCTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCATCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGATGGAAT-TGTAACTCGGCGTGGCTGAGATATTCGTCAGACTGTTAAGTCCCTTTTCCTACTGTTGTACGCTGCAATCTATCCGCGTGCAGATGTATTTTGCCAAAA]

[+] EMBL CF332700             [GAGTAGAAAAAATCCCACTGATCTCGTCATGGCAGCTCCAAATCCTTCTGCTACTATGGCGGCGGCGGCGGCGTCCACGCCGGCGAGGGCTTGGTGGCGGGCGGCTGCTCCGGCGAGTGCCTCAACTGCAGCTGTAAGCTGCTTCCGAGTTGGGGCCAAGAGCCTCACAGGGCTTCAGATGACAAGCACCCGCGCGAACAAAGTTCGGACAGTTCATGTCAAAAGCGGGGAGGCAGAAGGAAGTCCAAGCACAGAGAGCATCACCCGCGACGAGGAAACTCTGCAGCGTGACTTGCAAACAGCGATTCAGGAAGAAAACTATGCCCAGGCCGCGAAGCTCAGGGACGAGCTCCGAGTCCTCCAGGAGGACAGCAGGTCAGCAGTGCTGGCAGCGAATGCGCGGTTCTACAATGCCTTCAAGAAC GGGGATCTTGTCGCAATGCACTCGGCATGGG CGAAGGGCGACCATGTGT A CGTTGTTCATCCTTCGGCA GGCCGGATATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATGGTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CF333737             [GAGTAG  AAAATCCCACTGATCTCGTCATGGCAGCTCCAAATCCTTCTGCTACTATGGCGGCGGCGGCGGCGTCCACGCCGGCGAGGGCTTGGTGGCGGGCGGCTGCTCCGGCGAGTGCCTCAACTGCAGCTGTAAGCTGCTTCCGAGTTGGGGCCAAGAGCCTCACAGGGCTTCAGATGACAAGCACCCGCGCGAACAAAGTTCGGACAGTTCATGTCAAAAGCGGGGAGGCAGAAGGAAGTCCAAGCACAGAGAGCATCACCCGCGACGAGGAAACTCTGCAGCGTGACTTGCAAACAGCGGTTCAGGAAGAAAACTATGCCCAGGCCGCGAAGCTCAGGGACGAGCTCCGAGTCCTCCAGGAGGACAGCAGGTCAGCAGTGCTGGCAGCGAATGCGCGGTTCTACAATGCCTTCAAGAACGGGGGATCTTGTCGCAATGCACTCGGCATGGGCCGAAGGGCGACCATGTGTNACCGTTGTTCATCCTTCGGCA GGCCGGATATCGGGCTACGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK104117             [                ACTGATCTCGTCATGGCAGCTCCAAATCCTTCTGCTACTATGGCGACGGCGGCGGCGTCCACGCCGGCGAGGGCTTGGTGGCGGGCGGCTGCTCCGGCGAGTGCCTCAACTGCAGCTGTAAGCTGCTTCCGAGTTGGGGCCAAGAGCCTCACAGGGCTTCAGATGACAAGCACCCGCGCGAACAAAGTTCGGACAGTTCATGTCAAAAGCGGGGAGGCAGAAGGAAGTCCAAGCACAGAGAGCATCACCCGCGACGAGGAAACTCTGCAGCGTGACTTGCAAACAGCGATTCAGGAAGAAAACTATGCCCAGGCCGCGAAGCTCAGGGACGAGCTCCGAGTCCTCCAGGAGGACAGCAGGTCAGCAGTGCTGGCAGCGAATGCGCGGTTCTACAATGCCTTCAAGAAC GGGGATCTTGTCGCAATGCACTCGGCATGGG CGAAGGGCGACCATGTGT A CGTTGTTCATCCTTCGGCA GGCCGGATATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATGGTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCATGTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGCAGCTGGGGAAGGCAGGTTGCGACCAATGTGTTTGAGAAGGTTGATGGCAAATGGTTCATTTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCTGTTTTCTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCATCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGATGGAAT TGTAACTCGGCGTGGCTG                                                                                 ]
[+] EMBL CF312268             [                 CTGATCTCGTCATGGCAGCTCCAAATCCTTCTGCTACTATGGCGGCGGCGGCGGCGTCCACGCCGGCGAGGGCTTGGTGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CF281234             [                  TGATCTCGTCATGGCAGCTCCAAATCCTTCTGCTACTATGGCGGCGGCGGCGGCGTCCACGCCGGCGAGGGCTTGGTGGCGGGCGGCTGCTCCGGCGAGTGCCTCAACTGCAGCTGTAAGCTGCTTCCGAGTTGGGGCCAAGAGCCTCACAGGGCTTCAGATGACAAGCACCCGCGCGAACAAAGTTCGGACAGTTCATGTCAAAAGCGGGGAGGCAGAAGGAAGTCCAAGCACAGAGAGCATCACCCGCGACGAGGAAACTCTGCAGCGTGACTTGCAAACAGCGATTCAGGAAGAAAACTATGCCCAGGCCGCGAAGCTCAGGGACGAGCTCCGAGTCCTCCAGGAGGACAGCAGGTCAGCAGTGCTGGCAGCGAATGCGCGGTTCTACAATGCCTTCAAGAAC GGGGATCTTGTCGCAATGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK061452             [                       TCGTCATGGCAGCTCCAAATCCTTCTGCTACTATGGCGGCGGCGGCGGCGTCCACGCCGGCGAGGGCTTGGTGGCGGGCGGCTGCTCCGGCGAGTGCCTCAACTGCAGCTGTAAGCTGCTTCCGAGTTGGGGCCAAGAGCCTCACAGGGCTTCAGATGACAAGCACCCGCGCGAACAAAGTTCGGACAGTTCATGTCAAAAGCGGGGAGGCAGAAGGAAGTCCAAGCACAGAGAGCATCACCCGCGACGAGGAAACTCTGCAGCGTGACTTGCAAACAGCGATTCAGGAAGAAAACTATGCCCAGGCCGCGAAGCTCAGGGACGAGCTCCGAGTCCTCCAGGAGGACAGCAGGTCAGCAGTGCTGGCAGCGAATGCGCGGTTCTACAATGCCTTCAAGAAC GGGGATCTTGTCGCAATGCACTCGGCATGGG CGAAGGGCGACCATGTGT A CGTTGTTCATCCTTCGGCA GGCCGGATATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATGGTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCATGTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGCAGCTGGGGAAGGCAGGTTGCGACCAATGTGTTTGAGAAGGTTGATGGCAAATGGTTCATTTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCTGTTTTCTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCATCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGATGGAAT TGTAACTCGGCGTGGCTGAGATATTCGTCAGACTGTTAAGTCCCTTTTCCTACTGTTGTACGCTGCAATCTATCCGCGTGCAGAT              ]
[+] EMBL AK104526             [                                     CCAAATCCTTCTGCTACTATGGCGGCGGCGGCGGCGTCCACGCCGGCGAGGGCTTGGTGGCGGGCGGCTGCTCCGGCGAGTGCCTCAACTGCAGCTGTAAGCTGCTTCCGAGTTGGGGCCAAGAGCCTCACAGGGCTTCAGATGACAAGCACCCGCGCGAACAAAGTTCGGACAGTTCATGTCAAAAGCGGGGAGGCAGAAGGAAGTCCAAGCACAGAGAGCATCACCCGCGACGAGGAAACTCTGCAGCGTGACTTGCAAACAGCGATTCAGGAAGAAAACTATGCCCAGGCCGCGAAGCTCAGGGACGAGCTCCGAGTCCTCCAGGAGGACAGCAGGTCAGCAGTGCTGGCAGCGAATGCGCGGTTCTACAATGCCTTCAAGAAC GGGGATCTTGTCGCAATGCACTCGGCATGGG CGAAGGGCGACCATGTGT A CGTTGTTCATCCTTCGGCA GGCCGGATATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATGGTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCATGTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGCAGCTGGGGAAGGCAGGTTGCGACCAATGTGTTTGAGAAGGTTGATGGCAAATGGTTCATTTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCTGTTTTCTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCATCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGATGGAAT TGTAACTCGGCGTGGCTGAGATATTCG                                                                        ]
[-] EMBL CF312269             [                                                                                                                                                                                                                                                                                                                                                                                                                                             ATCTTGTCGCAATGCACTCGGCATGGG CGAAGGGCGACCATGTGT A CGTTGTTCAT CTTCGGCAGGGCCGGATATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATGGTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCATGTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGCAGCTGGGGAAGGCAGGTTGCGACCAATGTGTTTGAGAAGGTTGATGGCAAATGGTTCATTTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCTGTTTTCTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCATCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGATGGAAT TGTAACTCGGCGTGGCTGAGATATTCGTCAGACTGTTAAGTCCCTTTTCCTACTGTTGTACGCTGCAATCTATCCGCGTGCAGATGTATTTTGCCAAAA]
[-] EMBL CF332699             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GCATGGG CGAAGGGCGACCATGTGT A CGTTGTTCATCCTTCGGCA GGCCGGATATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATGGTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCATGTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGCAGCTGGGGAAGGCAGGTTGCGACCAATGTGTTTGAGAAGGTTGATGGCAAATGGTTCATTTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCTGTTTTCTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCATCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGATGGAAT TGTAACTCGGCGTGGCTGAGATATTCGTCAGACTGTTAAGTCCCTTTTCCTACTGTTGTACGCTGCAATCTATCCGCGTGCAGATGTAaaaaaa     ]
[-] EMBL CF291405             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          T A CGTTGTTCATCCTTCGGCA GGCCGGATATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATGGTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCATGTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGCAGCTGGGGAAGGCAGGTTGCGACCAATGTGTTTGAGAAGGTTGATGGCAAATGGTTCATTTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCAAGTGCAGATATGTCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCTGTTTTCTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCATCGAATGATGCTGCTAaaaaaa                                                                                                                                                ]
[-] EMBL CF281235             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATGGTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCATGTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGCAGCTGGGGAAGGCAGGTTGCGACCAATGTGTTTGAGAAGGTTGATGGCAAATGGTTCATTTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATAAAAAAAAGTTTTCTTAAGGTCCTTGATATGACCTTTTTGTAGAACCAAATATAAACCAATACTATCATCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGATGGAATGTGTAACTCGGCGTGGCTGAGATATTCGTCAGACTGTTAAGTCCCTGGGCTTTTTGTTG                                         ]




>consensus_14445#0
GAGTAGAAAAAATCCCACTGATCTCGTCATGGCAGCTCCAAATCCTTCTGCTACTATGGC
GGCGGCGGCGGCGTCCACGCCGGCGAGGGCTTGGTGGCGGGCGGCTGCTCCGGCGAGTGC
CTCAACTGCAGCTGTAAGCTGCTTCCGAGTTGGGGCCAAGAGCCTCACAGGGCTTCAGAT
GACAAGCACCCGCGCGAACAAAGTTCGGACAGTTCATGTCAAAAGCGGGGAGGCAGAAGG
AAGTCCAAGCACAGAGAGCATCACCCGCGACGAGGAAACTCTGCAGCGTGACTTGCAAAC
AGCGATTCAGGAAGAAAACTATGCCCAGGCCGCGAAGCTCAGGGACGAGCTCCGAGTCCT
CCAGGAGGACAGCAGGTCAGCAGTGCTGGCAGCGAATGCGCGGTTCTACAATGCCTTCAA
GAACGGGGATCTTGTCGCAATGCACTCGGCATGGGCGAAGGGCGACCATGTGTACGTTGT
TCATCCTTCGGCAGGCCGGATATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATGGT
GTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCATGT
GAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGCAG
CTGGGGAAGGCAGGTTGCGACCAATGTGTTTGAGAAGGTTGATGGCAAATGGTTCATTTG
TATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCT
GCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCTGTT
TTCTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCATCG
AATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGATGG
AATTGTAACTCGGCGTGGCTGAGATATTCGTCAGACTGTTAAGTCCCTTTTCCTACTGTT
GTACGCTGCAATCTATCCGCGTGCAGATGTATTTTGCCAAAA

consensusID : consensus_14445#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1000
fasta sequence

                              [TGACTGGACTGAAGGAGTAGAAAATGGCAGCTCCAAATCCTTCTGCTGCTATGGCGGCGGCGGCGTCCACGCCGGCGAGGGCTTGGTGGCAGGCGGCTGCTCCGGCGAGTGCCTCAACTGCAGCTGTAAGCTGCTTCCGAGTTGGGGCCAAGAGCCTCACAGGGCTTCAGATGACAAGCACCCGCGCGAACAAAGTTCGGACAGTTCATGTCAAAAGCGGGGAGGCAGAAGGAAGTCCAAGCACAGAGAGCATCACCCGCGACGAGGAAACTCTGCAGCGTGACTTGCAAACAGCGATTCAGGAAGAAAACTATGCCCAGGCCGCGAAGCTCAGGGACGAGCTCCGAGTCCTCCAGGAGGACAGCAGGTCAGCAGTGCTGGCAGCGAATGCGCGGTTCTACAGTGCCTTCAAGAACCGGGGATCTTGTCGCAATGCACTCGGCATGGGCGAAGGGCGACCATGTGTACCGTTGTTCATCCTTCGGCAGGCCGGATATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATGGTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCATGTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGCAGCTGGGGAAGGCAGGTTGCGACCAATGTGTTTGAGAAGGTTGATGGCAAATGGTTCATTTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCTGTTTTCTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCATCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGATGGAATTGTAACTCGGCGTGGCTGAGATATTCGTCAAAAAAAAAAAAAA]

[+] EMBL CF309790             [TGACTGGACTGAAGGAGTAGAAAATGGCAGCTCCAAATCCTTCTGCTGCTATGGCGGCGGCGGCGTCCACGCCGGCGAGGGCTTGGTGGCAGGCGGCTGCTCCGGCGAGTGCCTCAACTGCAGCTGTAAGCTGCTTCCGAGTTGGGGCCAAGAGCCTCACAGGGCTTCAGATGACAAGCACCCGCGCGAACAAAGTTCGGACAGTTCATGTCAAAAGCGGGGAGGCAGAAGGAAGTCCAAGCACAGAGAGCATCACCCGCGACGAGGAAACTCTGCAGCGTGACTTGCAAACAGCGATTCAGGAAGAAAACTATGCCCAGGCCGCGAAGCTCAGGGACGAGCTCCGAGTCCTCCAGGAGGACAGCAGGTCAGCAGTGCTGGCAGCGAATGCGCGGTTCTACAGTGCCTTCAAGAACCGGGGATCTTGTCGCAATGCACTCGGCATGGGCGAAGGGCGACCATGTGTACCGTTGTTCATCCTTCGGCAGGCCGGATATCGGGCTACGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CF309791             [                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCGGCATGGGCGAAGGGCGACCATGTGTA CGTTGTTCATCCTTCGGCAGGCCGGATATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATGGTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCATGTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGCAGCTGGGGAAGGCAGGTTGCGACCAATGTGTTTGAGAAGGTTGATGGCAAATGGTTCATTTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCTGTTTTCTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCATCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGATGGAATTGTAACTCGGCGTGGCTGAGATATTCGTCAAAAAAAAAAAAAA]




>consensus_14445#1
TGACTGGACTGAAGGAGTAGAAAATGGCAGCTCCAAATCCTTCTGCTGCTATGGCGGCGG
CGGCGTCCACGCCGGCGAGGGCTTGGTGGCAGGCGGCTGCTCCGGCGAGTGCCTCAACTG
CAGCTGTAAGCTGCTTCCGAGTTGGGGCCAAGAGCCTCACAGGGCTTCAGATGACAAGCA
CCCGCGCGAACAAAGTTCGGACAGTTCATGTCAAAAGCGGGGAGGCAGAAGGAAGTCCAA
GCACAGAGAGCATCACCCGCGACGAGGAAACTCTGCAGCGTGACTTGCAAACAGCGATTC
AGGAAGAAAACTATGCCCAGGCCGCGAAGCTCAGGGACGAGCTCCGAGTCCTCCAGGAGG
ACAGCAGGTCAGCAGTGCTGGCAGCGAATGCGCGGTTCTACAGTGCCTTCAAGAACCGGG
GATCTTGTCGCAATGCACTCGGCATGGGCGAAGGGCGACCATGTGTACCGTTGTTCATCC
TTCGGCAGGCCGGATATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATGGTGTGCGA
CGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCATGTGAGAGG
TGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGCAGCTGGGG
AAGGCAGGTTGCGACCAATGTGTTTGAGAAGGTTGATGGCAAATGGTTCATTTGTATCCA
CCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCAAGT
GCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCTGTTTTCTTA
AGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCATCGAATGAT
GCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGATGGAATTGT
AACTCGGCGTGGCTGAGATATTCGTCAAAAAAAAAAAAAA

consensusID : consensus_14445#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 588
fasta sequence

                              [GGCATGGGCGAAGGGCGACCATGTGTACGTTGTTCATCCTTCGGCAGGCCGGATATCGGGTTACGACATGGTGATGCAGAGCTGGGAGATGGTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCATGTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGCAGCTGGGGAAGGCAGGTTGCGACCAATGTGTTTGAAAAGGTTGATGGCAAATGGTTCATTTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCTGTTTTTTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCATCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGATGGAATTGTAACTCGGCGTGGCTGAGATATTCGTCAGACTGTTAAGTCCCTTTTCCTACAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF333738             [GGCATGGGCGAAGGGCGACCATGTGTACGTTGTTCATCCTTCGGCAGGCCGGATATCGGGTTACGACATGGTGATGCAGAGCTGGGAGATGGTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCATGTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGCAGCTGGGGAAGGCAGGTTGCGACCAATGTGTTTGAAAAGGTTGATGGCAAATGGTTCATTTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCTGTTTTTTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCATCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGATGGAATTGTAACTCGGCGTGGCTGAGATATTCGTCAGACTGTTAAGTCCCTTTTCCTACAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF196101             [                                                                                                                                                                                                                        GGGAAGGCAGGTTGCGACCAATGTGTTTGAGAAGGTTGATGGCAAATGGTTCATTTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCTGTTTTATTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCATCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGATGGAATTGTAACTCGGCGTGGCTGAGATATTCGTCAAACTGTCAAGTCCCTTTTCCTAAAAAAAAA            ]




>consensus_14445#2
GGCATGGGCGAAGGGCGACCATGTGTACGTTGTTCATCCTTCGGCAGGCCGGATATCGGG
TTACGACATGGTGATGCAGAGCTGGGAGATGGTGTGCGACGCGGACTACGAGTTCCCTCT
CCAGATTGATCTGCAGGATGTTGAGGTCCATGTGAGAGGTGATCTTGGGTATGTGACCTG
CCTGGAGCTGGTTAAGACCAAAGGGAGCAGCAGCTGGGGAAGGCAGGTTGCGACCAATGT
GTTTGAAAAGGTTGATGGCAAATGGTTCATTTGTATCCACCATGCCTCTCACTTCGATGA
GTGAGGCTGAATTTCTTGGAGAGAGGAAGAGCTGCAAGTGCAGATATGGCGTGAGGTTTT
GCAGTACAGGCGTGAGACATATACTTCGCTGTTTTTTTAAGGTCCTTGATATGACCTTTT
TGTAGAACCCTTTTTGTACCAATACTATCATCGAATGATGCTGCTATTTTGAGGAGTATT
AGTAGTAGGTACAGACAACCAGAACCCTGATGGAATTGTAACTCGGCGTGGCTGAGATAT
TCGTCAGACTGTTAAGTCCCTTTTCCTACAAAAAAAAAAAAAAAAAAA

consensusID : consensus_14445#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 127
fasta sequence

                              [ATTGTAACTAGGCGCGGCTGAGATATTCGTCAGACTGTTAAGTCCCTTTTCCTACTGTTGTACGCTGCAATCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF298236             [ATTGTAACTAGGCGCGGCTGAGATATTCGTCAGACTGTTAAGTCCCTTTTCCTACTGTTGTACGCTGCAATCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_14445#3
ATTGTAACTAGGCGCGGCTGAGATATTCGTCAGACTGTTAAGTCCCTTTTCCTACTGTTG
TACGCTGCAATCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14445#0      GAGTAGAAAAAATCCCACTGATCTCGTCATGGCAGCTCCAAATCCTTCTGCTACTATGGC 60
consensus_14445#1      -----TGACTGGACTGAAGGAGTAGAAAATGGCAGCTCCAAATCCTTCTGCTGCTATGGC 55
consensus_14445#2      ------------------------------------------------------------
consensus_14445#3      ------------------------------------------------------------
                                                                                   

consensus_14445#0      GGCGGCGGCGGCGTCCACGCCGGCGAGGGCTTGGTGGCGGGCGGCTGCTCCGGCGAGTGC 120
consensus_14445#1      GGCGGCGGCG---TCCACGCCGGCGAGGGCTTGGTGGCAGGCGGCTGCTCCGGCGAGTGC 112
consensus_14445#2      ------------------------------------------------------------
consensus_14445#3      ------------------------------------------------------------
                                                                                   

consensus_14445#0      CTCAACTGCAGCTGTAAGCTGCTTCCGAGTTGGGGCCAAGAGCCTCACAGGGCTTCAGAT 180
consensus_14445#1      CTCAACTGCAGCTGTAAGCTGCTTCCGAGTTGGGGCCAAGAGCCTCACAGGGCTTCAGAT 172
consensus_14445#2      ------------------------------------------------------------
consensus_14445#3      ------------------------------------------------------------
                                                                                   

consensus_14445#0      GACAAGCACCCGCGCGAACAAAGTTCGGACAGTTCATGTCAAAAGCGGGGAGGCAGAAGG 240
consensus_14445#1      GACAAGCACCCGCGCGAACAAAGTTCGGACAGTTCATGTCAAAAGCGGGGAGGCAGAAGG 232
consensus_14445#2      ------------------------------------------------------------
consensus_14445#3      ------------------------------------------------------------
                                                                                   

consensus_14445#0      AAGTCCAAGCACAGAGAGCATCACCCGCGACGAGGAAACTCTGCAGCGTGACTTGCAAAC 300
consensus_14445#1      AAGTCCAAGCACAGAGAGCATCACCCGCGACGAGGAAACTCTGCAGCGTGACTTGCAAAC 292
consensus_14445#2      ------------------------------------------------------------
consensus_14445#3      ------------------------------------------------------------
                                                                                   

consensus_14445#0      AGCGATTCAGGAAGAAAACTATGCCCAGGCCGCGAAGCTCAGGGACGAGCTCCGAGTCCT 360
consensus_14445#1      AGCGATTCAGGAAGAAAACTATGCCCAGGCCGCGAAGCTCAGGGACGAGCTCCGAGTCCT 352
consensus_14445#2      ------------------------------------------------------------
consensus_14445#3      ------------------------------------------------------------
                                                                                   

consensus_14445#0      CCAGGAGGACAGCAGGTCAGCAGTGCTGGCAGCGAATGCGCGGTTCTACAATGCCTTCAA 420
consensus_14445#1      CCAGGAGGACAGCAGGTCAGCAGTGCTGGCAGCGAATGCGCGGTTCTACAGTGCCTTCAA 412
consensus_14445#2      ------------------------------------------------------------
consensus_14445#3      ------------------------------------------------------------
                                                                                   

consensus_14445#0      GAAC-GGGGATCTTGTCGCAATGCACTCGGCATGGGCGAAGGGCGACCATGTGTAC-GTT 478
consensus_14445#1      GAACCGGGGATCTTGTCGCAATGCACTCGGCATGGGCGAAGGGCGACCATGTGTACCGTT 472
consensus_14445#2      ----------------------------GGCATGGGCGAAGGGCGACCATGTGTAC-GTT 31
consensus_14445#3      ------------------------------------------------------------
                                                                                   

consensus_14445#0      GTTCATCCTTCGGCAGGCCGGATATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATG 538
consensus_14445#1      GTTCATCCTTCGGCAGGCCGGATATCGGGCTACGACATGGTGATGCAGAGCTGGGAGATG 532
consensus_14445#2      GTTCATCCTTCGGCAGGCCGGATATCGGGTTACGACATGGTGATGCAGAGCTGGGAGATG 91
consensus_14445#3      ------------------------------------------------------------
                                                                                   

consensus_14445#0      GTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCAT 598
consensus_14445#1      GTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCAT 592
consensus_14445#2      GTGTGCGACGCGGACTACGAGTTCCCTCTCCAGATTGATCTGCAGGATGTTGAGGTCCAT 151
consensus_14445#3      ------------------------------------------------------------
                                                                                   

consensus_14445#0      GTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGC 658
consensus_14445#1      GTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGC 652
consensus_14445#2      GTGAGAGGTGATCTTGGGTATGTGACCTGCCTGGAGCTGGTTAAGACCAAAGGGAGCAGC 211
consensus_14445#3      ------------------------------------------------------------
                                                                                   

consensus_14445#0      AGCTGGGGAAGGCAGGTTGCGACCAA-TGTGTTTGAGAAGGTTGATGGCAAATGGTTCAT 717
consensus_14445#1      AGCTGGGGAAGGCAGGTTGCGACCAA-TGTGTTTGAGAAGGTTGATGGCAAATGGTTCAT 711
consensus_14445#2      AGCTGGGGAAGGCAGGTTGCGACCAA-TGTGTTTGAAAAGGTTGATGGCAAATGGTTCAT 270
consensus_14445#3      ---------------ATTGTAACTAGGCGCGGCTGAGATATTCGTCAG--ACTGTTAAGT 43
                                       ***  ** *   * *  *** *   * *   *  * ** *   *

consensus_14445#0      TTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGA 777
consensus_14445#1      TTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGA 771
consensus_14445#2      TTGTATCCACCATGCCTCTCACTTCGATGAGTGAGGCTGAATTTCTTGGAGAGAGGAAGA 330
consensus_14445#3      CCCTTTTCCTACTGTTGTACGCTGCAATCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 103
                          * * *    **     * ** * **     *     **        * * *  ** *

consensus_14445#0      GCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCT 837
consensus_14445#1      GCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCT 831
consensus_14445#2      GCTGCAAGTGCAGATATGGCGTGAGGTTTTGCAGTACAGGCGTGAGACATATACTTCGCT 390
consensus_14445#3      AAAAAAAAAAAAAAAAAAAAAAAA------------------------------------ 127
                            **    * * *       *                                    

consensus_14445#0      GTTTTCTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCA 897
consensus_14445#1      GTTTTCTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCA 891
consensus_14445#2      GTTTTTTTAAGGTCCTTGATATGACCTTTTTGTAGAACCCTTTTTGTACCAATACTATCA 450
consensus_14445#3      ------------------------------------------------------------
                                                                                   

consensus_14445#0      TCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGA 957
consensus_14445#1      TCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGA 951
consensus_14445#2      TCGAATGATGCTGCTATTTTGAGGAGTATTAGTAGTAGGTACAGACAACCAGAACCCTGA 510
consensus_14445#3      ------------------------------------------------------------
                                                                                   

consensus_14445#0      TGGAATTGTAACTCGGCGTGGCTGAGATATTCGTCAGACTGTTAAGTCCCTTTTCCTACT 1017
consensus_14445#1      TGGAATTGTAACTCGGCGTGGCTGAGATATTCGTCAAAAAAAAAAAAAA----------- 1000
consensus_14445#2      TGGAATTGTAACTCGGCGTGGCTGAGATATTCGTCAGACTGTTAAGTCCCTTTTCCTACA 570
consensus_14445#3      ------------------------------------------------------------
                                                                                   

consensus_14445#0      GTTGTACGCTGCAATCTATCCGCGTGCAGATGTATTTTGCCAAAA 1062
consensus_14445#1      ---------------------------------------------
consensus_14445#2      AAAAAAAAAAAAAAAAAA--------------------------- 588
consensus_14445#3      ---------------------------------------------