These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1445#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1199 fasta sequence [TCTCCTTGTCTCTCTGTGCTGTTGTTGTTGCGGGTGAATCTGCTTGGATTTCGTCGGAGTTTTCTGTCGCGGAGGAGGAGGGGGTGGTGGTTGATCGGAGGGGAGGGGGGAGGGAGATGGCGAGGGAGAGGAGGGAGATACGGAGGATAGAGAGCGCGGCGGCGCGGCAGGTGACGTTCTCGAAGCGGCGGCGGGGGCTGTTCAAGAAGGCGGAGGAGCTGGCGGTGCTGTGCGACGCCGACGTCGCGCTCGTCGTCTTCTCCTCCACCGGCAAGCTCTCCCAGTTCGCCAGCTCCAATATGAACGAGATCATTGACAAGTATACTACACATTCAAAGAACCTGGGGAAAACAGATAAGCAGCCTTCTATTGATCTGAATTTAGAGCACAGCAAGTGTAGCAGTTTGAATGAACAACTGGCAGAAGCAAGTCTTCAACTTAGACAGATGAGAGGTGAGGAGCTTGAGGGATTGAGTGTGGAAGAGCTGCAGCAGATGGAAAAGAACCTCGAGGCAGGACTGCAGCGGGTGCTATGTACAAAGGACCAGCAATTCATGCAAGAAATCAGTGAGCTCCAACGAAAGGGCATTCAGCTGGCAGAAGAGAATATGCGCCTCAGAGACCAAATGCCTCAGGTGCCTACTGCTGGCTTGGCGGTTCCTGATACTGAAAATGTTCTTACTGAAGATGGACAATCATCTGAATCTGTGATGACTGCATTAAATTCGGGAAGCTCGCAGGATAATGATGATGGTTCTGATATATCCCTGAAACTAGGGTTGCCTTGAAATAAAAGGACCAGCTAGAGAGCTGAGAAATGGGATGACGACCACCATGAATTATTTGTCTGTGTGCATGAGTGGATGAAGTTGGAAGTTAAATGCATCTTAAGAAGATCAAGAAGATGTCATGCTATGAGATTACCAACAAGGCTGCAATAATCCTATCCTATGTTAAAAAGGAGATCGATTGACTTGTCATCCTATGCCTGCTGATGCAATGGTCCGGTTGCTTGGATCTTTTTTTCTCAACTTGTACTAGTGTACCATACTACCTTCGTCGCACTTAATTTAAATGCGACATGTACGTATGTATCGTTCGCTTAATTCGTGCAAGTTATGTACGTACCTGTATGGGAACTGTATGGAAACTTGTGACCTCGGCTGAGACTTATTATTGGCACAATTATTAAGCTAGTC] [+] EMBL AK111859 [TCTCCTTGTCTCTCTGTGCTGTTGTTGTTGCGGGTGAATCTGCTTGGATTTCGTCGGAGTTTTCTGTCGCGGAGGAGGAGGGGGTGGTGGTTGATCGGAGGGGAGGGGGGAGGGAGATGGCGAGGGAGAGGAGGGAGATACGGAGGATAGAGAGCGCGGCGGCGCGGCAGGTGACGTTCTCGAAGCGGCGGCGGGGGCTGTTCAAGAAGGCGGAGGAGCTGGCGGTGCTGTGCGACGCCGACGTCGCGCTCGTCGTCTTCTCCTCCACCGGCAAGCTCTCCCAGTTCGCCAGCTCCAATATGAACGAGATCATTGACAAGTATACTACACATTCAAAGAACCTGGGGAAAACAGATAAGCAGCCTTCTATTGATCTGAATTTAGAGCACAGCAAGTGTAGCAGTTTGAATGAACAACTGGCAGAAGCAAGTCTTCAACTTAGACAGATGAGAGGTGAGGAGCTTGAGGGATTGAGTGTGGAAGAGCTGCAGCAGATGGAAAAGAACCTCGAGGCAGGACTGCAGCGGGTGCTATGTACAAAGGACCAGCAATTCATGCAAGAAATCAGTGAGCTCCAACGAAAGGGCATTCAGCTGGCAGAAGAGAATATGCGCCTCAGAGACCAAATGCCTCAGGTGCCTACTGCTGGCTTGGCGGTTCCTGATACTGAAAATGTTCTTACTGAAGATGGACAATCATCTGAATCTGTGATGACTGCATTAAATTCGGGAAGCTCGCAGGATAATGATGATGGTTCTGATATATCCCTGAAACTAGGGTTGCCTTGAAATAAAAGGACCAGCTAGAGAGCTGAGAAATGGGATGACGACCACCATGAATTATTTGTCTGTGTGCATGAGTGGATGAAGTTGGAAGTTAAATGCATCTTAAGAAGATCAAGAAGATGTCATGCTATGAGATTACCAACAAGGCTGCAATAATCCTATCCTATGTTAAAAAGGAGATCGATTGACTTGTCATCCTATGCCTGCTGATGCAATGGTCCGGTTGCTTGGATCTTTTTTTCTCAACTTGTACTAGTGTACCATACTACCTTCGTCGCACTTAATTTAAATGCGACATGTACGTATGTATCGTTCGCTTAATTCGTGCAAGTTATGTACGTACCTGTATGGGAACTGTATGGAAACTTGTGACCTCGGCTGAGACTTATTATTGGCACAATTATTAAGCTAGTC] consensusID : consensus_1445#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 719 fasta sequence [GAGAGGAGGGAGATACGGAGGATAGAGAGCGCGGCGGCGCGGCAGGTGACGTTCTCGAAGCGGCGGCGGGGGCTGTTCAAGAAGGCGGAGGAGCTGGCGGTGCTGTGCGACGCCGACGTCGCGCTCGTCGTCTTCTCCTCCACCGGCAAGCTCTCCCAGTTCGCCAGCTCCAATATGAACGAGATCATTGACAAGTATACTACACATTCAAAGAACCTGGGGAAAACAGATAAGCAGCCTTCTATTGATCTGAATTTCTTCTTAATTATATTGCTTCGTACATATACTAACAGTTATGCATATATTCACCTTCTTCTTCAGTTAGAGCACAGCAAGTGTAGCAGTTTGAATGAACAACTGGCAGAAGCAAGTCTTCAACTTAGACAGATGAGAGGTGAGGAGCTTGAGGGATTGAGTGTGGAAGAGCTGCAGCAGATGGAAAAGAACCTCGAGGCAGGACTGCAGCGGGTGCTCTGTACAAAGGACCAGCAATTCATGCAAGAAATCAGTGAGCTCCAACGAAAGGGCATTCAGCTGGCAGAAGAGAATATGCGCCTCAGAGACCAAATGCCTCAGGTGCCTACTGCTGGCTTGGCGGTTCCTGATACTGAAAATGTTCTTACTGAAGATGGACAATCATCTGAATCTGTGATGACTGCATTAAATTCGGGAAGCTCGCAGGATAATGATGATGGTTCTGATATATCCCTGAAACTAGG] [+] EMBL AY345223 [GAGAGGAGGGAGATACGGAGGATAGAGAGCGCGGCGGCGCGGCAGGTGACGTTCTCGAAGCGGCGGCGGGGGCTGTTCAAGAAGGCGGAGGAGCTGGCGGTGCTGTGCGACGCCGACGTCGCGCTCGTCGTCTTCTCCTCCACCGGCAAGCTCTCCCAGTTCGCCAGCTCCAATATGAACGAGATCATTGACAAGTATACTACACATTCAAAGAACCTGGGGAAAACAGATAAGCAGCCTTCTATTGATCTGAATTTCTTCTTAATTATATTGCTTCGTACATATACTAACAGTTATGCATATATTCACCTTCTTCTTCAGTTAGAGCACAGCAAGTGTAGCAGTTTGAATGAACAACTGGCAGAAGCAAGTCTTCAACTTAGACAGATGAGAGGTGAGGAGCTTGAGGGATTGAGTGTGGAAGAGCTGCAGCAGATGGAAAAGAACCTCGAGGCAGGACTGCAGCGGGTGCTCTGTACAAAGGACCAGCAATTCATGCAAGAAATCAGTGAGCTCCAACGAAAGGGCATTCAGCTGGCAGAAGAGAATATGCGCCTCAGAGACCAAATGCCTCAGGTGCCTACTGCTGGCTTGGCGGTTCCTGATACTGAAAATGTTCTTACTGAAGATGGACAATCATCTGAATCTGTGATGACTGCATTAAATTCGGGAAGCTCGCAGGATAATGATGATGGTTCTGATATATCCCTGAAACTAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1445#0 TCTCCTTGTCTCTCTGTGCTGTTGTTGTTGCGGGTGAATCTGCTTGGATTTCGTCGGAGT 60 consensus_1445#1 ------------------------------------------------------------ consensus_1445#0 TTTCTGTCGCGGAGGAGGAGGGGGTGGTGGTTGATCGGAGGGGAGGGGGGAGGGAGATGG 120 consensus_1445#1 ------------------------------------------------------------ consensus_1445#0 CGAGGGAGAGGAGGGAGATACGGAGGATAGAGAGCGCGGCGGCGCGGCAGGTGACGTTCT 180 consensus_1445#1 -----GAGAGGAGGGAGATACGGAGGATAGAGAGCGCGGCGGCGCGGCAGGTGACGTTCT 55 ******************************************************* consensus_1445#0 CGAAGCGGCGGCGGGGGCTGTTCAAGAAGGCGGAGGAGCTGGCGGTGCTGTGCGACGCCG 240 consensus_1445#1 CGAAGCGGCGGCGGGGGCTGTTCAAGAAGGCGGAGGAGCTGGCGGTGCTGTGCGACGCCG 115 ************************************************************ consensus_1445#0 ACGTCGCGCTCGTCGTCTTCTCCTCCACCGGCAAGCTCTCCCAGTTCGCCAGCTCCAATA 300 consensus_1445#1 ACGTCGCGCTCGTCGTCTTCTCCTCCACCGGCAAGCTCTCCCAGTTCGCCAGCTCCAATA 175 ************************************************************ consensus_1445#0 TGAACGAGATCATTGACAAGTATACTACACATTCAAAGAACCTGGGGAAAACAGATAAGC 360 consensus_1445#1 TGAACGAGATCATTGACAAGTATACTACACATTCAAAGAACCTGGGGAAAACAGATAAGC 235 ************************************************************ consensus_1445#0 AGCCTTCTATTGATCTGAATTT-------------------------------------- 382 consensus_1445#1 AGCCTTCTATTGATCTGAATTTCTTCTTAATTATATTGCTTCGTACATATACTAACAGTT 295 ********************** consensus_1445#0 ----------------------------AGAGCACAGCAAGTGTAGCAGTTTGAATGAAC 414 consensus_1445#1 ATGCATATATTCACCTTCTTCTTCAGTTAGAGCACAGCAAGTGTAGCAGTTTGAATGAAC 355 ******************************** consensus_1445#0 AACTGGCAGAAGCAAGTCTTCAACTTAGACAGATGAGAGGTGAGGAGCTTGAGGGATTGA 474 consensus_1445#1 AACTGGCAGAAGCAAGTCTTCAACTTAGACAGATGAGAGGTGAGGAGCTTGAGGGATTGA 415 ************************************************************ consensus_1445#0 GTGTGGAAGAGCTGCAGCAGATGGAAAAGAACCTCGAGGCAGGACTGCAGCGGGTGCTAT 534 consensus_1445#1 GTGTGGAAGAGCTGCAGCAGATGGAAAAGAACCTCGAGGCAGGACTGCAGCGGGTGCTCT 475 ********************************************************** * consensus_1445#0 GTACAAAGGACCAGCAATTCATGCAAGAAATCAGTGAGCTCCAACGAAAGGGCATTCAGC 594 consensus_1445#1 GTACAAAGGACCAGCAATTCATGCAAGAAATCAGTGAGCTCCAACGAAAGGGCATTCAGC 535 ************************************************************ consensus_1445#0 TGGCAGAAGAGAATATGCGCCTCAGAGACCAAATGCCTCAGGTGCCTACTGCTGGCTTGG 654 consensus_1445#1 TGGCAGAAGAGAATATGCGCCTCAGAGACCAAATGCCTCAGGTGCCTACTGCTGGCTTGG 595 ************************************************************ consensus_1445#0 CGGTTCCTGATACTGAAAATGTTCTTACTGAAGATGGACAATCATCTGAATCTGTGATGA 714 consensus_1445#1 CGGTTCCTGATACTGAAAATGTTCTTACTGAAGATGGACAATCATCTGAATCTGTGATGA 655 ************************************************************ consensus_1445#0 CTGCATTAAATTCGGGAAGCTCGCAGGATAATGATGATGGTTCTGATATATCCCTGAAAC 774 consensus_1445#1 CTGCATTAAATTCGGGAAGCTCGCAGGATAATGATGATGGTTCTGATATATCCCTGAAAC 715 ************************************************************ consensus_1445#0 TAGGGTTGCCTTGAAATAAAAGGACCAGCTAGAGAGCTGAGAAATGGGATGACGACCACC 834 consensus_1445#1 TAGG-------------------------------------------------------- 719 **** consensus_1445#0 ATGAATTATTTGTCTGTGTGCATGAGTGGATGAAGTTGGAAGTTAAATGCATCTTAAGAA 894 consensus_1445#1 ------------------------------------------------------------ consensus_1445#0 GATCAAGAAGATGTCATGCTATGAGATTACCAACAAGGCTGCAATAATCCTATCCTATGT 954 consensus_1445#1 ------------------------------------------------------------ consensus_1445#0 TAAAAAGGAGATCGATTGACTTGTCATCCTATGCCTGCTGATGCAATGGTCCGGTTGCTT 1014 consensus_1445#1 ------------------------------------------------------------ consensus_1445#0 GGATCTTTTTTTCTCAACTTGTACTAGTGTACCATACTACCTTCGTCGCACTTAATTTAA 1074 consensus_1445#1 ------------------------------------------------------------ consensus_1445#0 ATGCGACATGTACGTATGTATCGTTCGCTTAATTCGTGCAAGTTATGTACGTACCTGTAT 1134 consensus_1445#1 ------------------------------------------------------------ consensus_1445#0 GGGAACTGTATGGAAACTTGTGACCTCGGCTGAGACTTATTATTGGCACAATTATTAAGC 1194 consensus_1445#1 ------------------------------------------------------------ consensus_1445#0 TAGTC 1199 consensus_1445#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||