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Oryza sativa
cluster # 1445 cluster # 1445       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1445#0 length = 1199 sequences # 1  
consensus_1445#1 length = 719 sequences # 1  

consensusID : consensus_1445#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1199
fasta sequence
                              [TCTCCTTGTCTCTCTGTGCTGTTGTTGTTGCGGGTGAATCTGCTTGGATTTCGTCGGAGTTTTCTGTCGCGGAGGAGGAGGGGGTGGTGGTTGATCGGAGGGGAGGGGGGAGGGAGATGGCGAGGGAGAGGAGGGAGATACGGAGGATAGAGAGCGCGGCGGCGCGGCAGGTGACGTTCTCGAAGCGGCGGCGGGGGCTGTTCAAGAAGGCGGAGGAGCTGGCGGTGCTGTGCGACGCCGACGTCGCGCTCGTCGTCTTCTCCTCCACCGGCAAGCTCTCCCAGTTCGCCAGCTCCAATATGAACGAGATCATTGACAAGTATACTACACATTCAAAGAACCTGGGGAAAACAGATAAGCAGCCTTCTATTGATCTGAATTTAGAGCACAGCAAGTGTAGCAGTTTGAATGAACAACTGGCAGAAGCAAGTCTTCAACTTAGACAGATGAGAGGTGAGGAGCTTGAGGGATTGAGTGTGGAAGAGCTGCAGCAGATGGAAAAGAACCTCGAGGCAGGACTGCAGCGGGTGCTATGTACAAAGGACCAGCAATTCATGCAAGAAATCAGTGAGCTCCAACGAAAGGGCATTCAGCTGGCAGAAGAGAATATGCGCCTCAGAGACCAAATGCCTCAGGTGCCTACTGCTGGCTTGGCGGTTCCTGATACTGAAAATGTTCTTACTGAAGATGGACAATCATCTGAATCTGTGATGACTGCATTAAATTCGGGAAGCTCGCAGGATAATGATGATGGTTCTGATATATCCCTGAAACTAGGGTTGCCTTGAAATAAAAGGACCAGCTAGAGAGCTGAGAAATGGGATGACGACCACCATGAATTATTTGTCTGTGTGCATGAGTGGATGAAGTTGGAAGTTAAATGCATCTTAAGAAGATCAAGAAGATGTCATGCTATGAGATTACCAACAAGGCTGCAATAATCCTATCCTATGTTAAAAAGGAGATCGATTGACTTGTCATCCTATGCCTGCTGATGCAATGGTCCGGTTGCTTGGATCTTTTTTTCTCAACTTGTACTAGTGTACCATACTACCTTCGTCGCACTTAATTTAAATGCGACATGTACGTATGTATCGTTCGCTTAATTCGTGCAAGTTATGTACGTACCTGTATGGGAACTGTATGGAAACTTGTGACCTCGGCTGAGACTTATTATTGGCACAATTATTAAGCTAGTC]

[+] EMBL AK111859             [TCTCCTTGTCTCTCTGTGCTGTTGTTGTTGCGGGTGAATCTGCTTGGATTTCGTCGGAGTTTTCTGTCGCGGAGGAGGAGGGGGTGGTGGTTGATCGGAGGGGAGGGGGGAGGGAGATGGCGAGGGAGAGGAGGGAGATACGGAGGATAGAGAGCGCGGCGGCGCGGCAGGTGACGTTCTCGAAGCGGCGGCGGGGGCTGTTCAAGAAGGCGGAGGAGCTGGCGGTGCTGTGCGACGCCGACGTCGCGCTCGTCGTCTTCTCCTCCACCGGCAAGCTCTCCCAGTTCGCCAGCTCCAATATGAACGAGATCATTGACAAGTATACTACACATTCAAAGAACCTGGGGAAAACAGATAAGCAGCCTTCTATTGATCTGAATTTAGAGCACAGCAAGTGTAGCAGTTTGAATGAACAACTGGCAGAAGCAAGTCTTCAACTTAGACAGATGAGAGGTGAGGAGCTTGAGGGATTGAGTGTGGAAGAGCTGCAGCAGATGGAAAAGAACCTCGAGGCAGGACTGCAGCGGGTGCTATGTACAAAGGACCAGCAATTCATGCAAGAAATCAGTGAGCTCCAACGAAAGGGCATTCAGCTGGCAGAAGAGAATATGCGCCTCAGAGACCAAATGCCTCAGGTGCCTACTGCTGGCTTGGCGGTTCCTGATACTGAAAATGTTCTTACTGAAGATGGACAATCATCTGAATCTGTGATGACTGCATTAAATTCGGGAAGCTCGCAGGATAATGATGATGGTTCTGATATATCCCTGAAACTAGGGTTGCCTTGAAATAAAAGGACCAGCTAGAGAGCTGAGAAATGGGATGACGACCACCATGAATTATTTGTCTGTGTGCATGAGTGGATGAAGTTGGAAGTTAAATGCATCTTAAGAAGATCAAGAAGATGTCATGCTATGAGATTACCAACAAGGCTGCAATAATCCTATCCTATGTTAAAAAGGAGATCGATTGACTTGTCATCCTATGCCTGCTGATGCAATGGTCCGGTTGCTTGGATCTTTTTTTCTCAACTTGTACTAGTGTACCATACTACCTTCGTCGCACTTAATTTAAATGCGACATGTACGTATGTATCGTTCGCTTAATTCGTGCAAGTTATGTACGTACCTGTATGGGAACTGTATGGAAACTTGTGACCTCGGCTGAGACTTATTATTGGCACAATTATTAAGCTAGTC]


>consensus_1445#0 TCTCCTTGTCTCTCTGTGCTGTTGTTGTTGCGGGTGAATCTGCTTGGATTTCGTCGGAGT TTTCTGTCGCGGAGGAGGAGGGGGTGGTGGTTGATCGGAGGGGAGGGGGGAGGGAGATGG CGAGGGAGAGGAGGGAGATACGGAGGATAGAGAGCGCGGCGGCGCGGCAGGTGACGTTCT CGAAGCGGCGGCGGGGGCTGTTCAAGAAGGCGGAGGAGCTGGCGGTGCTGTGCGACGCCG ACGTCGCGCTCGTCGTCTTCTCCTCCACCGGCAAGCTCTCCCAGTTCGCCAGCTCCAATA TGAACGAGATCATTGACAAGTATACTACACATTCAAAGAACCTGGGGAAAACAGATAAGC AGCCTTCTATTGATCTGAATTTAGAGCACAGCAAGTGTAGCAGTTTGAATGAACAACTGG CAGAAGCAAGTCTTCAACTTAGACAGATGAGAGGTGAGGAGCTTGAGGGATTGAGTGTGG AAGAGCTGCAGCAGATGGAAAAGAACCTCGAGGCAGGACTGCAGCGGGTGCTATGTACAA AGGACCAGCAATTCATGCAAGAAATCAGTGAGCTCCAACGAAAGGGCATTCAGCTGGCAG AAGAGAATATGCGCCTCAGAGACCAAATGCCTCAGGTGCCTACTGCTGGCTTGGCGGTTC CTGATACTGAAAATGTTCTTACTGAAGATGGACAATCATCTGAATCTGTGATGACTGCAT TAAATTCGGGAAGCTCGCAGGATAATGATGATGGTTCTGATATATCCCTGAAACTAGGGT TGCCTTGAAATAAAAGGACCAGCTAGAGAGCTGAGAAATGGGATGACGACCACCATGAAT TATTTGTCTGTGTGCATGAGTGGATGAAGTTGGAAGTTAAATGCATCTTAAGAAGATCAA GAAGATGTCATGCTATGAGATTACCAACAAGGCTGCAATAATCCTATCCTATGTTAAAAA GGAGATCGATTGACTTGTCATCCTATGCCTGCTGATGCAATGGTCCGGTTGCTTGGATCT TTTTTTCTCAACTTGTACTAGTGTACCATACTACCTTCGTCGCACTTAATTTAAATGCGA CATGTACGTATGTATCGTTCGCTTAATTCGTGCAAGTTATGTACGTACCTGTATGGGAAC TGTATGGAAACTTGTGACCTCGGCTGAGACTTATTATTGGCACAATTATTAAGCTAGTC



consensusID : consensus_1445#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 719
fasta sequence
                              [GAGAGGAGGGAGATACGGAGGATAGAGAGCGCGGCGGCGCGGCAGGTGACGTTCTCGAAGCGGCGGCGGGGGCTGTTCAAGAAGGCGGAGGAGCTGGCGGTGCTGTGCGACGCCGACGTCGCGCTCGTCGTCTTCTCCTCCACCGGCAAGCTCTCCCAGTTCGCCAGCTCCAATATGAACGAGATCATTGACAAGTATACTACACATTCAAAGAACCTGGGGAAAACAGATAAGCAGCCTTCTATTGATCTGAATTTCTTCTTAATTATATTGCTTCGTACATATACTAACAGTTATGCATATATTCACCTTCTTCTTCAGTTAGAGCACAGCAAGTGTAGCAGTTTGAATGAACAACTGGCAGAAGCAAGTCTTCAACTTAGACAGATGAGAGGTGAGGAGCTTGAGGGATTGAGTGTGGAAGAGCTGCAGCAGATGGAAAAGAACCTCGAGGCAGGACTGCAGCGGGTGCTCTGTACAAAGGACCAGCAATTCATGCAAGAAATCAGTGAGCTCCAACGAAAGGGCATTCAGCTGGCAGAAGAGAATATGCGCCTCAGAGACCAAATGCCTCAGGTGCCTACTGCTGGCTTGGCGGTTCCTGATACTGAAAATGTTCTTACTGAAGATGGACAATCATCTGAATCTGTGATGACTGCATTAAATTCGGGAAGCTCGCAGGATAATGATGATGGTTCTGATATATCCCTGAAACTAGG]

[+] EMBL AY345223             [GAGAGGAGGGAGATACGGAGGATAGAGAGCGCGGCGGCGCGGCAGGTGACGTTCTCGAAGCGGCGGCGGGGGCTGTTCAAGAAGGCGGAGGAGCTGGCGGTGCTGTGCGACGCCGACGTCGCGCTCGTCGTCTTCTCCTCCACCGGCAAGCTCTCCCAGTTCGCCAGCTCCAATATGAACGAGATCATTGACAAGTATACTACACATTCAAAGAACCTGGGGAAAACAGATAAGCAGCCTTCTATTGATCTGAATTTCTTCTTAATTATATTGCTTCGTACATATACTAACAGTTATGCATATATTCACCTTCTTCTTCAGTTAGAGCACAGCAAGTGTAGCAGTTTGAATGAACAACTGGCAGAAGCAAGTCTTCAACTTAGACAGATGAGAGGTGAGGAGCTTGAGGGATTGAGTGTGGAAGAGCTGCAGCAGATGGAAAAGAACCTCGAGGCAGGACTGCAGCGGGTGCTCTGTACAAAGGACCAGCAATTCATGCAAGAAATCAGTGAGCTCCAACGAAAGGGCATTCAGCTGGCAGAAGAGAATATGCGCCTCAGAGACCAAATGCCTCAGGTGCCTACTGCTGGCTTGGCGGTTCCTGATACTGAAAATGTTCTTACTGAAGATGGACAATCATCTGAATCTGTGATGACTGCATTAAATTCGGGAAGCTCGCAGGATAATGATGATGGTTCTGATATATCCCTGAAACTAGG]


>consensus_1445#1 GAGAGGAGGGAGATACGGAGGATAGAGAGCGCGGCGGCGCGGCAGGTGACGTTCTCGAAG CGGCGGCGGGGGCTGTTCAAGAAGGCGGAGGAGCTGGCGGTGCTGTGCGACGCCGACGTC GCGCTCGTCGTCTTCTCCTCCACCGGCAAGCTCTCCCAGTTCGCCAGCTCCAATATGAAC GAGATCATTGACAAGTATACTACACATTCAAAGAACCTGGGGAAAACAGATAAGCAGCCT TCTATTGATCTGAATTTCTTCTTAATTATATTGCTTCGTACATATACTAACAGTTATGCA TATATTCACCTTCTTCTTCAGTTAGAGCACAGCAAGTGTAGCAGTTTGAATGAACAACTG GCAGAAGCAAGTCTTCAACTTAGACAGATGAGAGGTGAGGAGCTTGAGGGATTGAGTGTG GAAGAGCTGCAGCAGATGGAAAAGAACCTCGAGGCAGGACTGCAGCGGGTGCTCTGTACA AAGGACCAGCAATTCATGCAAGAAATCAGTGAGCTCCAACGAAAGGGCATTCAGCTGGCA GAAGAGAATATGCGCCTCAGAGACCAAATGCCTCAGGTGCCTACTGCTGGCTTGGCGGTT CCTGATACTGAAAATGTTCTTACTGAAGATGGACAATCATCTGAATCTGTGATGACTGCA TTAAATTCGGGAAGCTCGCAGGATAATGATGATGGTTCTGATATATCCCTGAAACTAGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1445#0      TCTCCTTGTCTCTCTGTGCTGTTGTTGTTGCGGGTGAATCTGCTTGGATTTCGTCGGAGT 60
consensus_1445#1      ------------------------------------------------------------
                                                                                  

consensus_1445#0      TTTCTGTCGCGGAGGAGGAGGGGGTGGTGGTTGATCGGAGGGGAGGGGGGAGGGAGATGG 120
consensus_1445#1      ------------------------------------------------------------
                                                                                  

consensus_1445#0      CGAGGGAGAGGAGGGAGATACGGAGGATAGAGAGCGCGGCGGCGCGGCAGGTGACGTTCT 180
consensus_1445#1      -----GAGAGGAGGGAGATACGGAGGATAGAGAGCGCGGCGGCGCGGCAGGTGACGTTCT 55
                           *******************************************************

consensus_1445#0      CGAAGCGGCGGCGGGGGCTGTTCAAGAAGGCGGAGGAGCTGGCGGTGCTGTGCGACGCCG 240
consensus_1445#1      CGAAGCGGCGGCGGGGGCTGTTCAAGAAGGCGGAGGAGCTGGCGGTGCTGTGCGACGCCG 115
                      ************************************************************

consensus_1445#0      ACGTCGCGCTCGTCGTCTTCTCCTCCACCGGCAAGCTCTCCCAGTTCGCCAGCTCCAATA 300
consensus_1445#1      ACGTCGCGCTCGTCGTCTTCTCCTCCACCGGCAAGCTCTCCCAGTTCGCCAGCTCCAATA 175
                      ************************************************************

consensus_1445#0      TGAACGAGATCATTGACAAGTATACTACACATTCAAAGAACCTGGGGAAAACAGATAAGC 360
consensus_1445#1      TGAACGAGATCATTGACAAGTATACTACACATTCAAAGAACCTGGGGAAAACAGATAAGC 235
                      ************************************************************

consensus_1445#0      AGCCTTCTATTGATCTGAATTT-------------------------------------- 382
consensus_1445#1      AGCCTTCTATTGATCTGAATTTCTTCTTAATTATATTGCTTCGTACATATACTAACAGTT 295
                      **********************                                      

consensus_1445#0      ----------------------------AGAGCACAGCAAGTGTAGCAGTTTGAATGAAC 414
consensus_1445#1      ATGCATATATTCACCTTCTTCTTCAGTTAGAGCACAGCAAGTGTAGCAGTTTGAATGAAC 355
                                                  ********************************

consensus_1445#0      AACTGGCAGAAGCAAGTCTTCAACTTAGACAGATGAGAGGTGAGGAGCTTGAGGGATTGA 474
consensus_1445#1      AACTGGCAGAAGCAAGTCTTCAACTTAGACAGATGAGAGGTGAGGAGCTTGAGGGATTGA 415
                      ************************************************************

consensus_1445#0      GTGTGGAAGAGCTGCAGCAGATGGAAAAGAACCTCGAGGCAGGACTGCAGCGGGTGCTAT 534
consensus_1445#1      GTGTGGAAGAGCTGCAGCAGATGGAAAAGAACCTCGAGGCAGGACTGCAGCGGGTGCTCT 475
                      ********************************************************** *

consensus_1445#0      GTACAAAGGACCAGCAATTCATGCAAGAAATCAGTGAGCTCCAACGAAAGGGCATTCAGC 594
consensus_1445#1      GTACAAAGGACCAGCAATTCATGCAAGAAATCAGTGAGCTCCAACGAAAGGGCATTCAGC 535
                      ************************************************************

consensus_1445#0      TGGCAGAAGAGAATATGCGCCTCAGAGACCAAATGCCTCAGGTGCCTACTGCTGGCTTGG 654
consensus_1445#1      TGGCAGAAGAGAATATGCGCCTCAGAGACCAAATGCCTCAGGTGCCTACTGCTGGCTTGG 595
                      ************************************************************

consensus_1445#0      CGGTTCCTGATACTGAAAATGTTCTTACTGAAGATGGACAATCATCTGAATCTGTGATGA 714
consensus_1445#1      CGGTTCCTGATACTGAAAATGTTCTTACTGAAGATGGACAATCATCTGAATCTGTGATGA 655
                      ************************************************************

consensus_1445#0      CTGCATTAAATTCGGGAAGCTCGCAGGATAATGATGATGGTTCTGATATATCCCTGAAAC 774
consensus_1445#1      CTGCATTAAATTCGGGAAGCTCGCAGGATAATGATGATGGTTCTGATATATCCCTGAAAC 715
                      ************************************************************

consensus_1445#0      TAGGGTTGCCTTGAAATAAAAGGACCAGCTAGAGAGCTGAGAAATGGGATGACGACCACC 834
consensus_1445#1      TAGG-------------------------------------------------------- 719
                      ****                                                        

consensus_1445#0      ATGAATTATTTGTCTGTGTGCATGAGTGGATGAAGTTGGAAGTTAAATGCATCTTAAGAA 894
consensus_1445#1      ------------------------------------------------------------
                                                                                  

consensus_1445#0      GATCAAGAAGATGTCATGCTATGAGATTACCAACAAGGCTGCAATAATCCTATCCTATGT 954
consensus_1445#1      ------------------------------------------------------------
                                                                                  

consensus_1445#0      TAAAAAGGAGATCGATTGACTTGTCATCCTATGCCTGCTGATGCAATGGTCCGGTTGCTT 1014
consensus_1445#1      ------------------------------------------------------------
                                                                                  

consensus_1445#0      GGATCTTTTTTTCTCAACTTGTACTAGTGTACCATACTACCTTCGTCGCACTTAATTTAA 1074
consensus_1445#1      ------------------------------------------------------------
                                                                                  

consensus_1445#0      ATGCGACATGTACGTATGTATCGTTCGCTTAATTCGTGCAAGTTATGTACGTACCTGTAT 1134
consensus_1445#1      ------------------------------------------------------------
                                                                                  

consensus_1445#0      GGGAACTGTATGGAAACTTGTGACCTCGGCTGAGACTTATTATTGGCACAATTATTAAGC 1194
consensus_1445#1      ------------------------------------------------------------
                                                                                  

consensus_1445#0      TAGTC 1199
consensus_1445#1      -----
                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)