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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1446#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1148 fasta sequence
[CCTTGGCGGCGGCGACCAGTGCAAGCCCATGCCGCATTATCTTCGTAGTCTCCTCTGCTCCATCGCCGAGGCCCGCTACCTCAACCGCACCCTCGTCCTCGATCTCAGCGTCTGTCTCGCCGCCGCCTACGCCGGGGGCATGCCCGAGGAGGGCAAGCGCCTCGCCTTCTATATTGACATTGAGCACCTGCAATCCGTGGTCGGGATCGTTGAACACAAGCGGTTCTGGGAGGATTGGGACAAGTGGGGAGCACAGGGTCAGCTTGGAGTCCGCATCATCGAGGACAGCAGGGTTGCGCCCACCAAGTTCTCCAAGTCGAGGGATCCCCTGATCGTTAGGAAATTTGGGGACGTGGAGCCAGGGAATTATTGGTACAATGTGTGCGAGGGCGAAGCTGAGCATGTCCTCCGTCCACCGCAGGGAGCAATACGCACGGCGCCAAGCTTGATGGACATTGTTGATGGTATCATATCAAGGATGCAAGTAGATTTTGACTCTGTTCATGTTGGTGGCAATGATGGGAACCTCAGAAGAAGGATTGAGGAGAGACTCAATGGAGGAGGAAGGCAGGTGTATGTTGCGGGAGAGGGCATCAACGTGGTCTTGTTGGATGCGCTGAAGGCAAAGTACAGCAGTGTGCATTACCTAGATGCGTTTGAGGAACTCTGGGCGAGAGATAGCAAGTGGTTTCTGGAGATGAAGAGGCTCAATGGTGGAGTTCCTGTGGAGTTTGATGGATACATGCGTGAGCTTGTTGACAGGGAGGTCTTCCTCAAGGGGAAGAAGAAGGTCGAAGTGCTCGTCCGATCTACTCTCTGAGATTAAGGTGTCGAAGAACATGGTATGTATCCAAGGGAATCTTCTACTCTTATCTGATATTTTCTCTCTACATCACTAGATGATTCAGTCAAACATTGCTTAGGAGATTTTTTTTTTTGTTGATGTTCAATGTAGCACATGCAACCCACTGCTGCTCAAGAGCACTAGTAATGTGTAAATCTTTTCCTTCACCAAAGGCGATTCAGTCAAAATCCCTTCCAAGGAAATTTTGTTAACCTTCAGTTGTAATACATGTAGCTCAGTGTTACTTGATAGCACTATGTATATATCTTTTCCTTAAAGAAGGGTGATTCAGTAAAGATCGCAT]
[+] EMBL AK064132 [CCTTGGCGGCGGCGACCAGTGCAAGCCCATGCCGCATTATCTTCGTAGTCTCCTCTGCTCCATCGCCGAGGCCCGCTACCTCAACCGCACCCTCGTCCTCGATCTCAGCGTCTGTCTCGCCGCCGCCTACGCCGGGGGCATGCCCGAGGAGGGCAAGCGCCTCGCCTTCTATATTGACATTGAGCACCTGCAATCCGTGGTCGGGATCGTTGAACACAAGCGGTTCTGGGAGGATTGGGACAAGTGGGGAGCACAGGGTCAGCTTGGAGTCCGCATCATCGAGGACAGCAGGGTTGCGCCCACCAAGTTCTCCAAGTCGAGGGATCCCCTGATCGTTAGGAAATTTGGGGACGTGGAGCCAGGGAATTATTGGTACAATGTGTGCGAGGGCGAAGCTGAGCATGTCCTCCGTCCACCGCAGGGAGCAATACGCACGGCGCCAAGCTTGATGGACATTGTTGATGGTATCATATCAAGGATGCAAGTAGATTTTGACTCTGTTCATGTTGGTGGCAATGATGGGAACCTCAGAAGAAGGATTGAGGAGAGACTCAATGGAGGAGGAAGGCAGGTGTATGTTGCGGGAGAGGGCATCAACGTGGTCTTGTTGGATGCGCTGAAGGCAAAGTACAGCAGTGTGCATTACCTAGATGCGTTTGAGGAACTCTGGGCGAGAGATAGCAAGTGGTTTCTGGAGATGAAGAGGCTCAATGGTGGAGTTCCTGTGGAGTTTGATGGATACATGCGTGAGCTTGTTGACAGGGAGGTCTTCCTCAAGGGGAAGAAGAAGGTCGAAGTGCTCGTCCGATCTACTCTCTGAGATTAAGGTGTCGAAGAACATGGTATGTATCCAAGGGAATCTTCTACTCTTATCTGATATTTTCTCTCTACATCACTAGATGATTCAGTCAAACATTGCTTAGGAGATTTTTTTTTTTGTTGATGTTCAATGTAGCACATGCAACCCACTGCTGCTCAAGAGCACTAGTAATGTGTAAATCTTTTCCTTCACCAAAGGCGATTCAGTCAAAATCCCTTCCAAGGAAATTTTGTTAACCTTCAGTTGTAATACATGTAGCTCAGTGTTACTTGATAGCACTATGTATATATCTTTTCCTTAAAGAAGGGTGATTCAGTAAAGATCGCAT]
consensusID : consensus_1446#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 416 fasta sequence
[AGAGGACGAGACAAGGGGGAGAAGAAGGTCGAAGTGCTCGTCTGATCTACTCTCTGAGATTAAGGTGTCGAAGAACATGGTATGTATCCAAGGGAATCTTCTACTCTTATCTGATATTTTCTCTCTACATCCCTAGATGATTCAGTCAAACATTGCTTAGGAGATTTTTTTTTTTTTGTTGATGTTCAATGTAGCACATGCAACCCACTGCTGCTCAAGAGCACTAGTAATGTGTAAATCTTTTCCTCCCCCAAAGGCGATTCAGTCAAAATCCCTTCCAAGGAAATTTTGTTAACCTTCAGCTGTAATACATGTAGCTCAATGTTACTTGATAGCCCTATGTATATATCTTTTCCTTAAAGAAGGGTGATTCAGTAAAGATCGCATTTCCTTTGTTAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA761715 [AGAGGACGAGACAAGGGGGAGAAGAAGGTCGAAGTGCTCGTCTGATCTACTCTCTGAGATTAAGGTGTCGAAGAACATGGTATGTATCCAAGGGAATCTTCTACTCTTATCTGATATTTTCTCTCTACATCCCTAGATGATTCAGTCAAACATTGCTTAGGAGATTTTTTTTTTTTTGTTGATGTTCAATGTAGCACATGCAACCCACTGCTGCTCAAGAGCACTAGTAATGTGTAAATCTTTTCCTCCCCCAAAGGCGATTCAGTCAAAATCCCTTCCAAGGAAATTTTGTTAACCTTCAGCTGTAATACATGTAGCTCAATGTTACTTGATAGCCCTATGTATATATCTTTTCCTTAAAGAAGGGTGATTCAGTAAAGATCGCATTTCCTTTGTTAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1446#0 CCTTGGCGGCGGCGACCAGTGCAAGCCCATGCCGCATTATCTTCGTAGTCTCCTCTGCTC 60
consensus_1446#1 ------------------------------------------------------------
consensus_1446#0 CATCGCCGAGGCCCGCTACCTCAACCGCACCCTCGTCCTCGATCTCAGCGTCTGTCTCGC 120
consensus_1446#1 ------------------------------------------------------------
consensus_1446#0 CGCCGCCTACGCCGGGGGCATGCCCGAGGAGGGCAAGCGCCTCGCCTTCTATATTGACAT 180
consensus_1446#1 ------------------------------------------------------------
consensus_1446#0 TGAGCACCTGCAATCCGTGGTCGGGATCGTTGAACACAAGCGGTTCTGGGAGGATTGGGA 240
consensus_1446#1 ------------------------------------------------------------
consensus_1446#0 CAAGTGGGGAGCACAGGGTCAGCTTGGAGTCCGCATCATCGAGGACAGCAGGGTTGCGCC 300
consensus_1446#1 ------------------------------------------------------------
consensus_1446#0 CACCAAGTTCTCCAAGTCGAGGGATCCCCTGATCGTTAGGAAATTTGGGGACGTGGAGCC 360
consensus_1446#1 ------------------------------------------------------------
consensus_1446#0 AGGGAATTATTGGTACAATGTGTGCGAGGGCGAAGCTGAGCATGTCCTCCGTCCACCGCA 420
consensus_1446#1 ------------------------------------------------------------
consensus_1446#0 GGGAGCAATACGCACGGCGCCAAGCTTGATGGACATTGTTGATGGTATCATATCAAGGAT 480
consensus_1446#1 ------------------------------------------------------------
consensus_1446#0 GCAAGTAGATTTTGACTCTGTTCATGTTGGTGGCAATGATGGGAACCTCAGAAGAAGGAT 540
consensus_1446#1 ------------------------------------------------------------
consensus_1446#0 TGAGGAGAGACTCAATGGAGGAGGAAGGCAGGTGTATGTTGCGGGAGAGGGCATCAACGT 600
consensus_1446#1 ------------------------------------------------------------
consensus_1446#0 GGTCTTGTTGGATGCGCTGAAGGCAAAGTACAGCAGTGTGCATTACCTAGATGCGTTTGA 660
consensus_1446#1 ------------------------------------------------------------
consensus_1446#0 GGAACTCTGGGCGAGAGATAGCAAGTGGTTTCTGGAGATGAAGAGGCTCAATGGTGGAGT 720
consensus_1446#1 ------------------------------------------------------------
consensus_1446#0 TCCTGTGGAGTTTGATGGATACATGCGTGAGCTTGTTGACAGGGAGGTCTTCCTCAAGGG 780
consensus_1446#1 ------------------------------------------AGAGGACGAGA-CAAGGG 17
**** * ******
consensus_1446#0 GAAGAAGAAGGTCGAAGTGCTCGTCCGATCTACTCTCTGAGATTAAGGTGTCGAAGAACA 840
consensus_1446#1 GGAGAAGAAGGTCGAAGTGCTCGTCTGATCTACTCTCTGAGATTAAGGTGTCGAAGAACA 77
* *********************** **********************************
consensus_1446#0 TGGTATGTATCCAAGGGAATCTTCTACTCTTATCTGATATTTTCTCTCTACATCACTAGA 900
consensus_1446#1 TGGTATGTATCCAAGGGAATCTTCTACTCTTATCTGATATTTTCTCTCTACATCCCTAGA 137
****************************************************** *****
consensus_1446#0 TGATTCAGTCAAACATTGCTTAGGAGATTTTTTTTTTT--GTTGATGTTCAATGTAGCAC 958
consensus_1446#1 TGATTCAGTCAAACATTGCTTAGGAGATTTTTTTTTTTTTGTTGATGTTCAATGTAGCAC 197
************************************** ********************
consensus_1446#0 ATGCAACCCACTGCTGCTCAAGAGCACTAGTAATGTGTAAATCTTTTCCTTCACCAAAGG 1018
consensus_1446#1 ATGCAACCCACTGCTGCTCAAGAGCACTAGTAATGTGTAAATCTTTTCCTCCCCCAAAGG 257
************************************************** * *******
consensus_1446#0 CGATTCAGTCAAAATCCCTTCCAAGGAAATTTTGTTAACCTTCAGTTGTAATACATGTAG 1078
consensus_1446#1 CGATTCAGTCAAAATCCCTTCCAAGGAAATTTTGTTAACCTTCAGCTGTAATACATGTAG 317
********************************************* **************
consensus_1446#0 CTCAGTGTTACTTGATAGCACTATGTATATATCTTTTCCTTAAAGAAGGGTGATTCAGTA 1138
consensus_1446#1 CTCAATGTTACTTGATAGCCCTATGTATATATCTTTTCCTTAAAGAAGGGTGATTCAGTA 377
**** ************** ****************************************
consensus_1446#0 AAGATCGCAT----------------------------- 1148
consensus_1446#1 AAGATCGCATTTCCTTTGTTAAAAAAAAAAAAAAAAAAA 416
**********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||