cluster # 14464

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 14464 cluster # 14464 Sequences # 16 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14464#0 length = 1143 sequences # 12
consensus_14464#1 length = 694 sequences # 1

consensus_14464#2 length = 369 sequences # 2
consensus_14464#3 length = 275 sequences # 1

consensusID : consensus_14464#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1143
fasta sequence

                              [TCCTCTTCCGCATCGGCCCAATCCACCCGCGGCGGCGATCTCTCTCTACCCCGATCTCCTCTCGCCGTCGGCGTCGCCCGGGTCGCCGCCGCCCTCCGCCGCGCAGTCCGCAGCTAGTAGGT-GGGGGGGTTAGCCTTAGCGTGAGAGGCCTTTGCCGCCGGCTGCGATGGCGGAGGAGCTGGTGCTGGACACGGCGATCCGGGACTGGGTCCTCGTCCCGCTCTCCGTGGTGATGGTGCTCATCGGCGTGCTCCGCTACTTCGTCGCCAAGCTGATGCGCTCCCCGTCGGCGTCGCCCTCCCCCGACCCCAAGCTCGTCAAGGAGGGGCAAGTGGTAATTAGGGCGAGGAACCTGAGGATCAATTCGCAGTACATCCCGGCCAAGGCCTTCAAATCACGCAAGGTTTATTACACT-AACGAGGAAAACGGATTGCTTCATGTCCCGAAAGAGGAAGCACAGAAAGCTCAGGCTGCCATGTTTTCAGATCCAAACATGGCCATGGACATGATGAAGAAGAACCTCTCTATGATAGTTCCTCAGACACTTACATTTGCATGGGTGAACTTCTTCTTTTCGGGTTTTGTTGCAGCTAAGATTCCCTTTCCATTGACTCCGCGATTCAGGGGAATGCTGCAAAACGGGATAGACCTGAGTACTGTTGATGTGAGCTATGTTAGCAGCCGTTCATGGTACTTTCTCAATTTGTTTGGTTTGAGGGGTCTCTTCAGTCTGATCCTCGGTGAAGAAAATGCTAATGATGATGCACAAAAGATGATGCAGATGGGTGGGGGATTTGGCGGTAATCCCACAATGGGTTTGGCCGCAGAGAAAGACAACCTGGATATAATCCAGCATGACTGGGCTTTACCAAAGATGGAGCATCATGCTGAGGAAGTGCTGAGGAAGCTTCTGAAGAAATGATAGGAAACTAGGCTGCTCCAAT-GCATTACTACATCTTGCAAAATTTTTGTTTTAACCTGTTTATTGACCAGACAGTTAAAACTTTGTATCTGTATAACTTAT-GGCCAAGAATTTCCTTCAGAAAGTTTATGTATCATTTTTCTGTTAT------ACGGACCACAGCCAGGCTCAATGCAGAATGAACAAAAATCTTTTTTCTTGGCAAAAAGGTACTGACTCAGTAA]

[+] EMBL CF294150             [TCCTCTTCCGCATCGGCCCAATCCACCCGCGGCGGCGATCTCTCTCTACCCCGATCTCCTCTCGCCGTCGGCGTCGCCCGGGTCGCCGCCGCCCTCCGCCGCGCAGTCCGCAGCTAGTAGGTGGGGGGGGTTAGCCTTAGCGTGAGAGGCCTTTGCCGCCGGCTGCGATGGCGGAGGAGCTGGTGCTGGACACGGCGATCCGGGACTGGGTCCTCGTCCCGCTCTCCGTGGTGATGGTGCTCATCGGCGTGCTCCGCTACTTCGTCGCCAAGCTGATGCGCTCCCCGTCGGCGTCGCCCTCCCCCGACCCCAAGCTCGTCAAGGAGGGGCAAGTGGTAATTAGGGCGAGGAACCTGAGGATCAATTCGCAGTACATCCCGGCCAAGGCCTTCAAATCACGCAAGGTTTATTACACT AACGAGGAAAACGGATTGCTTCATGTCCCGAAAGAGGAAGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CF316491             [                   AATCCACCCGCGGCGGCGATCTCTCTCTACCCCGATCTCCTCTCGCCGTCGGCGTCGCCCGGGTCGCCGCCGCCCTCCGCCGCGCAGTCCGCAGCTAGTAGGTNGGGGGGGTTAGCCTTAGCGTGAGAGGCCTTTGCCGCCGGCTGCGATGGCGGAGGAGCTGGTGCTGGACACGGCGATCCGGGACTGGGTTCTCGTCCCGCTCTCCGTGGTGATGGTGCTCATCGGCGTGCTCCGCTACTTCGTCGCCAAGCTGATGCGCTCCCCGTCGGCGTCGCCCTCCCCCGACCCCAAGCTCGTCAAGGAGGGGCAAGTGGTAATTAGGGCGAGGAACCTGAGGATCAATTCGCAGTACATCCCGGCCAAGGCCTTCAAATCACGCAAGGTTTATTACACT AACGAGGAAAACGGATTGCTTCATGTCCCGAAAGAGGAAGCACAGAAAGCTCAGGCTGCCATGTTTTCAGATCCAAACATGGCCATGGACATGATGAAGAAGAACCTCTCTATGATAGTTCCTCAGACACTTACATTTGCATAGGTGAACTTCTTCTTTTCGGGTTTTGTTGCAGCTAAGATTCCCTTTCCATTGACTCCGCGATTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK068677             [                      CCACCCGCGGCGGCGATCTCTCTCTACCCCGATCTCCTCTCGCCGTCGGCGTCGCCCGGGTCGCCGCCGCCCTCCGCCGCGCAGTCCGCAGCTAGTAGGT GGGGGGGTTAGCCTTAGCGTGAGAGGCCTTTGCCGCCGGCTGCGATGGCGGAGGAGCTGGTGCTGGACACGGCGATCCGGGACTGGGTCCTCGTCCCGCTCTCCGTGGTGATGGTGCTCATCGGCGTGCTCCGCTACTTCGTCGCCAAGCTGATGCGCTCCCCGTCGGCGTCGCCCTCCCCCGACCCCAAGCTCGTCAAGGAGGGGCAAGTGGTAATTAGGGCGAGGAACCTGAGGATCAATTCGCAGTACATCCCGGCCAAGGCCTTCAAATCACGCAAGGTTTATTACACT AACGAGGAAAACGGATTGCTTCATGTCCCGAAAGAGGAAGCACAGAAAGCTCAGGCTGCCATGTTTTCAGATCCAAACATGGCCATGGACATGATGAAGAAGAACCTCTCTATGATAGTTCCTCAGACACTTACATTTGCATGGGTGAACTTCTTCTTTTCGGGTTTTGTTGCAGCTAAGATTCCCTTTCCATTGACTCCGCGATTCAGGGGAATGCTGCAAAACGGGATAGACCTGAGTACTGTTGATGTGAGCTATGTTAGCAGCCGTTCATGGTACTTTCTCAATTTGTTTGGTTTGAGGGGTCTCTTCAGTCTGATCCTCGGTGAAGAAAATGCTAATGATGATGCACAAAAGATGATGCAGATGGGTGGGGGATTTGGCGGTAATCCCACAATGGGTTTGGCCGCAGAGAAAGACAACCTGGATATAATCCAGCATGACTGGGCTTTACCAAAGATGGAGCATCATGCTGAGGAAGTGCTGAGGAAGCTTCTGAAGAAATGATAGGAAACTAGGCTGCTCCAAT GCATTACTACATCTTGCAAAATTTTTGTTTTAACCTGTTTATTGACCAGACAGTTAAAACTTTGTATCTGTATAACTTAT GGCCAAGAATTTCCTTCAGAAAGTTTATGTATCATTTTTCTGTTAT      ACGGACCACAGCCAGGCTCAATGCAGAATGAACAAAAATCTTTTTTCTTGGCAAAGAGGTACTGACTCAGTAA]
[+] EMBL CF310571             [                           CGCGGCGGCGATCTCTCTCTACCCCGATCTCCTCTCGCCGTCGGCGTCGCCCGGGTCGCCGCCGCCCTCCGCCGCGCAGTCCGCAGCTAGTAGGT GGGGGGGTTAGCCTTAGCGTGAGAGGCCTTTGCCGCCGGCTGCGATGGCGGAGGAGCTGGTGCTGGACACGGCGATCCGGGACTGGGTCCTCGTCCCGCTCTCCGTGGTGATGGTGCTCATCGGCGTGCTCCGCTACTTCGTCGCCAAGCTGATGCGCTCCCCGTCGGCGTCGCCCTCCCCCGACCCCAAGCTCGTCAAGGAGGGGCAAGTGGTAATTAGGGCGAGGAACCTGAGGATCAATTCGCAGTACATCCCGGCCAAGGCCTTCAAATCACGCAAGGTTTATTACACT AACGAGGAAAACGGATTGCTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CF296075             [                               GCGGCGATCTCTCTCTACCCCGATCTCCTCTCGCCGTCGGCGTCGCCCGGGTCGCCGCCGCCCTCCGCCGCGCAGTCCGCAGCTAGTACGT GGGGGGGTTAGCCTTAACGTGAGAGGCCTTTGCCGCCGGCTGCGATGGCGGAGGAGCTGGTGCTGGACACGGCGATCCGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL C72458               [                                                      TCTCCTCTCGCCGTCGGNTNCGCCCGGGTCGCCGCCGCCCTCCGCCGCGCAGTCCGCAGCTAGTAGGT GGGGGGGTTAGCCTTAGCGTGAGAGGCCTTTGCCGCCGGCTGCGATGGCGGAGGAGCTGGTGCTGGACACGGCGATCCGGGACTGGGTCCTCGTCCCGCTCTCCGTGGTGATGGTGCTCATCGGCGTGCTCCGCTACTTCGTCGCCAAGCTGATGCGCTCCCCGTCGGCGTCG CCTCCCCCGACCCCAAGCTCGTCAAGGAGGGGCAAGTNGTAATTAGGGCGAGGAA CTGANGATCATTTCGCAGTACATNCCGGCCAAGGCTTTNAATTCACG AAGGTTTATTAAANTAAACGAGG AAACGGTTTTTTTTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AK058354             [                                                                                                                                                                                                                                                 CATCGGCGTGCTCCGCTACTTCGTCGCCAAGCTGATGCGCTCCCCGTCGGCGTCGCCCTCCCCCGACCCCAAGCTCGTCAAGGAGGGGCAAGTGGTAATTAGGGCGAGGAACCTGAGGATCAATTCGCAGTACATCCCGGCCAAGGCCTTCAAATCACGCAAGGTTTATTACACT AACGAGGAAAACGGATTGCTTCATGTCCCGAAAGAGGAAGCACAGAAAGCTCAGGCTGCCATGTTTTCAGATCCAAACATGGCCATGGACATGATGAAGGAGAACCTCTCTATGATAGTTCCTCAGACACTTACATTTGCATGGGTGAACTTCTTCTTTTCGGGTTTTGTTGCAGCTAAGATTCCCTTTCCATTGACTCCGCGATTCAGGGGAATGCTGCAAAACGGGATAGACCTGAGTACTGTTGATGTGAGCTATGTTAGCAGCCGTTCATGGTACTTTCTCAATTTGTTTGGTTTGAGGGGTCTCTTCAGTCTGATCCTCGGTGAAGAAAATGCTAATGATGATGCACAAAAGATGATGCAGATGGGTGGGGGATTTGGCGGTAATCCCACAATGGGTTTGGCCGCAGAGAAAGACAACCTGGATATAATCCAGCATGACTGGGCTTTACCAAAGATGGAGCATCATGCTGAGGAAGTGCTGAGGAAGCTTCTGAAGAAATGATAGGAAACTAGGCTGCTCCAAT GCATTACTACATCTTGCAAAATTTTTGTTTTAACCTGTTTATTGACCAGACAGTTAAAACTTTGTATCTGTATAACTTAT GGCCAAGAATTTCCTTCAGAAAGTTTATGTATCATTTTTCTGTTATAAAAAAACGGACCACAGCCAGGCTCAATGCAGAATGAACAAAAATCTT                               ]
[-] EMBL CF296074             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CATTTGCATGGGTGAACTTCTTCTTTTCGGGTTTTGTTGCAGCTAAGATTCCCTTTCCATTGACTCCGCGATTCAGGGGAATGCTGCAAAACGGGATAGACCTGAGTACTGTTGATGTGAGCTATGTTAGCAGCCGTTCATGGTACTTTCTCAATTTGTTTGGTTTGAGGGGTCTCTTCAGTCTGATCCTCGGTGAAGAAAATGCTAATGATGATGCACAAAAGATGATGCAGATGGGTGGGGGATTTGGCGGTAATCCCACAATGGGTTTGGCCGCAGAGAAAGACAACCTGGATATAATCCAGCATGACTGGGCTTTACCAAAGATGGAGCATCATGCTGAGGAAGTGCTGAGGAAGCTTCTGAAGAAATGATAGGAAACTAGGCTGCTCCAAT GCATTACTACATCTTGCAAAATTTTTGTTTTAACCTGTTTATTGACCAGACAGTTAAAACTTTGTATCTGTATAACTTAT GGCCAAGAATTTCCTTCAGAAAGTTTATGTATCATTTTTCTGTTAT      ACGGACCACAGCCAGGCTCAATGCAGAATGAACAAAAATCTTTTTTCTTGGCAAAAA                ]
[+] EMBL AU057844             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCTTTTCGGGTTTTGTTGCAGCTAAGATTCCCTTTCCATTGACTCCGCGATTCAGGGGAATGCTGCAAAACGGGATAGACCTGAGTACTGTTGATGTGAGCTATGTTAGCAGCCGTTCATGGTACTTTCTCAATTTGTTTGGTTTGAGGGGTCTCTTCAGTCTGATCCTCGGTGAAGAAAATGCTAATGATGATGCACAAAAGATGATGCAGATGGGTGGGGGATTTGGCGGTAATCCCACAATGGGTTTGGCCGCAGAGAAAGACAACCTGGATATAATCCAGCATGACTGGGCTTTACCAAAGATGGAGCATCATGCTGAGGAAGTGCTGAGGAAGCTTCTGAAGAAATGATAGGAAACTAGGCTGCTCCAATGGCATTACTACATCTTGCAAAATTTTTGTTTTAACCTGTTTATTGACCAGACAGTTAAAACTTTGTATCTGTATAACTTATGGGCCAAGAATTTCCTTCAAAAAaaaa                                                                                                   ]
[-] EMBL CF316492             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CCGCGATTCAGGGGAATGCTGCAAAACGGGATAGACCTGAGTACTGTTGATGTGAGCTATGTTAGCAGCCGTTCATGGTACTTTCTCAATTTGTTTGGTTTGAGGGGTCTCTTCAGTCTGATCCTCGGTGAAGAAAATGCTAATGATGATGCACAAAAGATGATGCAGATGGGTGGGGGATTTGGCGGTAATCCCACAATGGGTTTGGCCGCAGAGAAAGACAACCTGGATATAATCCAGCATGACTGGGCTTTACCAAAGATGGAGCATCATGCTGAGGAAGTGCTGAGGAAGCTTCTGAAGAAATGATAGGAAACTAGGCTGCTCCAAT GCATTACTACATCTTGCAAAATTTTTGTTTTAACCTGTTTATTGACCAGACAGTTAAAACTTTGTATCTGTATAACTTAT GGCCAAGAATTTCCTTCAGAAAGTTTATGTATCAaaaa                                                                                       ]
[+] EMBL AU182302             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ACTTTCTCAATTTGTTTGGTTTGAGGGGTCTCTTCAGTCTGATCCTCGGTGAAGAAAATGCTAATGATGATGCACAAAAGATGATGCAGATGGGTGGGGGATTTGGCGGTAATCCCACAATGGGTTTGGCCGCAGAGAAAGACAACCTGGATATAATCCAGCATGACTGGGCTTTACCAAAGATGGAGCATCATGCTGAGGAAGTGCTGAGGAAGCTTCTGAAGAAATGATAGGAAACTAGGCTGCTCCAAT GCATTACTACATCTTGCAAAATTTTTGTTTTAACCTGTTTATTGACCAGACAGTTAAAACTTTGTATCTGTATAACTTAT GGCCAAGAATTTCCTTCAGAAAGTTTATGTATCATTTTTCTGTTAT      ACGGACCACAGCCAGGCTCAATGCAGAATGAACAAAAATCTTTTTTCTTGGCAAAAAaaaa            ]
[+] EMBL BE230704             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             cgagAAAAGATGATGCAGATGGGTGGGGGATTTGGCGGTAATCCCACAATGGGTTTGGCCGCAGAGAAAGACAACCTGGATATAATCCAGCATGACTGGGCTTTACCAAAGATGGAGCATCATGCTGAGGAAGTGCTGAGGAAGCTTCTGAAGAAATGATAGGAAACTAGGCTGCTCCAAT GCATTACTACATCTTGCAAAATTTTTKTTTTAACCTGTTTATTGACCAGACAGTTAAAACTTTGTATCTGTATAACTTAT GGCCAAGAATTTCCTTCAGAAAGTTTATGTATCATTTTTCTGTTAT      ACGGACCACAGCCAGGCTCAATGCAGAATGAACAAAAATCTTTTTTCTTKGC                     ]




>consensus_14464#0
TCCTCTTCCGCATCGGCCCAATCCACCCGCGGCGGCGATCTCTCTCTACCCCGATCTCCT
CTCGCCGTCGGCGTCGCCCGGGTCGCCGCCGCCCTCCGCCGCGCAGTCCGCAGCTAGTAG
GTGGGGGGGTTAGCCTTAGCGTGAGAGGCCTTTGCCGCCGGCTGCGATGGCGGAGGAGCT
GGTGCTGGACACGGCGATCCGGGACTGGGTCCTCGTCCCGCTCTCCGTGGTGATGGTGCT
CATCGGCGTGCTCCGCTACTTCGTCGCCAAGCTGATGCGCTCCCCGTCGGCGTCGCCCTC
CCCCGACCCCAAGCTCGTCAAGGAGGGGCAAGTGGTAATTAGGGCGAGGAACCTGAGGAT
CAATTCGCAGTACATCCCGGCCAAGGCCTTCAAATCACGCAAGGTTTATTACACTAACGA
GGAAAACGGATTGCTTCATGTCCCGAAAGAGGAAGCACAGAAAGCTCAGGCTGCCATGTT
TTCAGATCCAAACATGGCCATGGACATGATGAAGAAGAACCTCTCTATGATAGTTCCTCA
GACACTTACATTTGCATGGGTGAACTTCTTCTTTTCGGGTTTTGTTGCAGCTAAGATTCC
CTTTCCATTGACTCCGCGATTCAGGGGAATGCTGCAAAACGGGATAGACCTGAGTACTGT
TGATGTGAGCTATGTTAGCAGCCGTTCATGGTACTTTCTCAATTTGTTTGGTTTGAGGGG
TCTCTTCAGTCTGATCCTCGGTGAAGAAAATGCTAATGATGATGCACAAAAGATGATGCA
GATGGGTGGGGGATTTGGCGGTAATCCCACAATGGGTTTGGCCGCAGAGAAAGACAACCT
GGATATAATCCAGCATGACTGGGCTTTACCAAAGATGGAGCATCATGCTGAGGAAGTGCT
GAGGAAGCTTCTGAAGAAATGATAGGAAACTAGGCTGCTCCAATGCATTACTACATCTTG
CAAAATTTTTGTTTTAACCTGTTTATTGACCAGACAGTTAAAACTTTGTATCTGTATAAC
TTATGGCCAAGAATTTCCTTCAGAAAGTTTATGTATCATTTTTCTGTTATACGGACCACA
GCCAGGCTCAATGCAGAATGAACAAAAATCTTTTTTCTTGGCAAAAAGGTACTGACTCAG
TAA

consensusID : consensus_14464#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence

                              [CAGAGGCGAGGCAAGGGGGTTCACTACCGAGGACAACGGATTGCTTCATGTCCCGAAAGAGGAAGCACAGAAAGCTCAGGGTGCCATGTTTTTAGATCCAAACATGGCCATGGACATGATGAAGAAGAACCTCTCTATGATGGTTCCTCAGACACTTACATTTGCATGGGTGAACTTCTTCTTTTCAGGTTTTGTTGCAGCTAAGATTCCCTTTCCATTGACTCCGCGATTCAGGGGAATGCTGCAAAACGGGATAGACCTGAGTACTGTTGATGTGAGCTATGTTAGCAGCCGTTCATGGTACTTTCTCAATTTGTTTGGTTTGAGGGGTCTCTTCAGTTTGATCCTCGGTGAAGAAAATGCTAATGATGATGCCCAAAAGATGATGCAGATGGGTGGGGGATTTGGCGGTAATCCCACAATGGGTTTGGCCGCAGAGAAAGACAACCTGGATATAATCCAGCATGGCTGGGCTTTACCAAAGATGGAGCATCATGCTGAGGAAGTGCTGAGGAAGCTTTTGAAGAAATGATAGGAAACTAGGCTGCTCCAATGCATTAATACATCTTGCAAAATTTTTGTTTTAACCTGTTTATTGACCAGACAGTTAAAACTTTGTATCTGTATAACTTATGGCCAAGAATTTCCTTCAGAAAGTTTATGTATCATTTTTCTGTTAAAAAAAAAAAAAAAA]

[-] EMBL CA762312             [CAGAGGCGAGGCAAGGGGGTTCACTACCGAGGACAACGGATTGCTTCATGTCCCGAAAGAGGAAGCACAGAAAGCTCAGGGTGCCATGTTTTTAGATCCAAACATGGCCATGGACATGATGAAGAAGAACCTCTCTATGATGGTTCCTCAGACACTTACATTTGCATGGGTGAACTTCTTCTTTTCAGGTTTTGTTGCAGCTAAGATTCCCTTTCCATTGACTCCGCGATTCAGGGGAATGCTGCAAAACGGGATAGACCTGAGTACTGTTGATGTGAGCTATGTTAGCAGCCGTTCATGGTACTTTCTCAATTTGTTTGGTTTGAGGGGTCTCTTCAGTTTGATCCTCGGTGAAGAAAATGCTAATGATGATGCCCAAAAGATGATGCAGATGGGTGGGGGATTTGGCGGTAATCCCACAATGGGTTTGGCCGCAGAGAAAGACAACCTGGATATAATCCAGCATGGCTGGGCTTTACCAAAGATGGAGCATCATGCTGAGGAAGTGCTGAGGAAGCTTTTGAAGAAATGATAGGAAACTAGGCTGCTCCAATGCATTAATACATCTTGCAAAATTTTTGTTTTAACCTGTTTATTGACCAGACAGTTAAAACTTTGTATCTGTATAACTTATGGCCAAGAATTTCCTTCAGAAAGTTTATGTATCATTTTTCTGTTAAAAAAAAAAAAAAAA]




>consensus_14464#1
CAGAGGCGAGGCAAGGGGGTTCACTACCGAGGACAACGGATTGCTTCATGTCCCGAAAGA
GGAAGCACAGAAAGCTCAGGGTGCCATGTTTTTAGATCCAAACATGGCCATGGACATGAT
GAAGAAGAACCTCTCTATGATGGTTCCTCAGACACTTACATTTGCATGGGTGAACTTCTT
CTTTTCAGGTTTTGTTGCAGCTAAGATTCCCTTTCCATTGACTCCGCGATTCAGGGGAAT
GCTGCAAAACGGGATAGACCTGAGTACTGTTGATGTGAGCTATGTTAGCAGCCGTTCATG
GTACTTTCTCAATTTGTTTGGTTTGAGGGGTCTCTTCAGTTTGATCCTCGGTGAAGAAAA
TGCTAATGATGATGCCCAAAAGATGATGCAGATGGGTGGGGGATTTGGCGGTAATCCCAC
AATGGGTTTGGCCGCAGAGAAAGACAACCTGGATATAATCCAGCATGGCTGGGCTTTACC
AAAGATGGAGCATCATGCTGAGGAAGTGCTGAGGAAGCTTTTGAAGAAATGATAGGAAAC
TAGGCTGCTCCAATGCATTAATACATCTTGCAAAATTTTTGTTTTAACCTGTTTATTGAC
CAGACAGTTAAAACTTTGTATCTGTATAACTTATGGCCAAGAATTTCCTTCAGAAAGTTT
ATGTATCATTTTTCTGTTAAAAAAAAAAAAAAAA

consensusID : consensus_14464#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 369
fasta sequence

                              [GAACTGGCTGTTT-CAGGGTTTGGCCGCAGAGAAAGACAACCTGGATATAATCCAGCATGACTGGGCTTTACCAAAGATGGAGCATCATGCTGAGGAAGTGCTGAGGAAGCTTCTGAAGAAATGATAGGAAACTAGGCTGCTCCAATGCATTACTACATCTTGCAAAATTTTTGTTTTAACCTGTTTATTGACCAGACAGTTAAAACTTTGTATCTGTATAACTTATGGCCAAGAGTTTCCTTCAGAAAGTTTATGTATCATTTTTCTGTTATACGGACCACAGCCAGGCTCAATGCAGAATGAACAAAAATCTTTTTTCTTGGCAAAGAGGTACTGACTCAGTAAATTTGATTGCANAAAAAAAAAAAA]

[+] EMBL CF330275             [GAACTGGCTGTTT CAGGGTTTGGCCGCAGAGAAAGACAACCTGGATATAATCCAGCATGACTGGGCTTTACCAAAGATGGAGCATCATGCTGAGGAAGTGCTGAGGAAGCTTCTGAAGAAATGATAGGAAACTAGGCTGCTCCAATGCATTACTACATCTTGCAAAATTTTTGTTTTAACCTGTTTATTGACCAGACAGTTAAAACTTTGTATCTGTATAACTTATGGCCAAGAGTTTCCTTCAGAAAGTTTATGTATCATTTTTCTGTTATACGGACCACAGCCAGGCTCAATGCAGAATGAACAAAAATCTTTTTTCTTGGCAAAGAGGTACTGACTCAGTAAATTTGATTGCANAAAAAAAAAAA ]
[-] EMBL CF330276             [ AACTGGCTGTTTCCAGGGTTTGGCCGCAGAGAAAGACAACCTGGATATAATCCAGCATGACTGGGCTTTACCAAAGATGGAGCATCATGCTGAGGAAGTGCTGAGGAAGCTTCTGAAGAAATGATAGGAAACTAGGCTGCTCCAATGCATTACTACATCTTGCAAAATTTTTGTTTTAACCTGTTTATTGACCAGACAGTTAAAACTTTGTATCTGTATAACTTATGGCCAAGAGTTTCCTTCAGAAAGTTTATGTATCATTTTTCTGTTATACGGACCACAGCCAGGCTCAATGCAGAATGAACAAAAATTTTTTTTCTTGGCAAAGAGGTACTGACTCAGTAAATTTGATTGCAAAAAAAAAAAAAA]




>consensus_14464#2
GAACTGGCTGTTTCAGGGTTTGGCCGCAGAGAAAGACAACCTGGATATAATCCAGCATGA
CTGGGCTTTACCAAAGATGGAGCATCATGCTGAGGAAGTGCTGAGGAAGCTTCTGAAGAA
ATGATAGGAAACTAGGCTGCTCCAATGCATTACTACATCTTGCAAAATTTTTGTTTTAAC
CTGTTTATTGACCAGACAGTTAAAACTTTGTATCTGTATAACTTATGGCCAAGAGTTTCC
TTCAGAAAGTTTATGTATCATTTTTCTGTTATACGGACCACAGCCAGGCTCAATGCAGAA
TGAACAAAAATCTTTTTTCTTGGCAAAGAGGTACTGACTCAGTAAATTTGATTGCANAAA
AAAAAAAAA

consensusID : consensus_14464#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 275
fasta sequence

                              [AGCATGATTGGGCTTTACCAAAGATGGAGCTTCATGTTGAGGAAGTGTTGAGGAAGTTTTTGAAGAAATGATAGGAAATTAGGTTGCTCCAATGCATAAAAACATCTTGCAAAATTTTTGTTTAAACCTGTTTATTGCCCAAAAAGTTAAAACTTTGTATCTGTATAACTTAGGGCCAAGAATTTCCTTCAAAAAGTTTAGGTATCATTTTTCTGTTATAGGGCCCCCAGCCAGGTTCAATGCAGAATGACCAAAATTTTTTTTTTTGTGGCAAA]

[-] EMBL CF294151             [AGCATGATTGGGCTTTACCAAAGATGGAGCTTCATGTTGAGGAAGTGTTGAGGAAGTTTTTGAAGAAATGATAGGAAATTAGGTTGCTCCAATGCATAAAAACATCTTGCAAAATTTTTGTTTAAACCTGTTTATTGCCCAAAAAGTTAAAACTTTGTATCTGTATAACTTAGGGCCAAGAATTTCCTTCAAAAAGTTTAGGTATCATTTTTCTGTTATAGGGCCCCCAGCCAGGTTCAATGCAGAATGACCAAAATTTTTTTTTTTGTGGCAAA]




>consensus_14464#3
AGCATGATTGGGCTTTACCAAAGATGGAGCTTCATGTTGAGGAAGTGTTGAGGAAGTTTT
TGAAGAAATGATAGGAAATTAGGTTGCTCCAATGCATAAAAACATCTTGCAAAATTTTTG
TTTAAACCTGTTTATTGCCCAAAAAGTTAAAACTTTGTATCTGTATAACTTAGGGCCAAG
AATTTCCTTCAAAAAGTTTAGGTATCATTTTTCTGTTATAGGGCCCCCAGCCAGGTTCAA
TGCAGAATGACCAAAATTTTTTTTTTTGTGGCAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14464#2      ------------------------------------------------------------
consensus_14464#3      ------------------------------------------------------------
consensus_14464#0      TCCTCTTCCGCATCGGCCCAATCCACCCGCGGCGGCGATCTCTCTCTACCCCGATCTCCT 60
consensus_14464#1      ------------------------------------------------------------
                                                                                   

consensus_14464#2      ------------------------------------------------------------
consensus_14464#3      ------------------------------------------------------------
consensus_14464#0      CTCGCCGTCGGCGTCGCCCGGGTCGCCGCCGCCCTCCGCCGCGCAGTCCGCAGCTAGTAG 120
consensus_14464#1      ------------------------------------------------------------
                                                                                   

consensus_14464#2      ------------------------------------------------------------
consensus_14464#3      ------------------------------------------------------------
consensus_14464#0      GTGGGGGGGTTAGCCTTAGCGTGAGAGGCCTTTGCCGCCGGCTGCGATGGCGGAGGAGCT 180
consensus_14464#1      ------------------------------------------------------------
                                                                                   

consensus_14464#2      ------------------------------------------------------------
consensus_14464#3      ------------------------------------------------------------
consensus_14464#0      GGTGCTGGACACGGCGATCCGGGACTGGGTCCTCGTCCCGCTCTCCGTGGTGATGGTGCT 240
consensus_14464#1      ------------------------------------------------------------
                                                                                   

consensus_14464#2      ------------------------------------------------------------
consensus_14464#3      ------------------------------------------------------------
consensus_14464#0      CATCGGCGTGCTCCGCTACTTCGTCGCCAAGCTGATGCGCTCCCCGTCGGCGTCGCCCTC 300
consensus_14464#1      ------------------------------------------------------------
                                                                                   

consensus_14464#2      ------------------------------------------------------------
consensus_14464#3      ------------------------------------------------------------
consensus_14464#0      CCCCGACCCCAAGCTCGTCAAGGAGGGGCAAGTGGTAATTAGGGCGAGGAACCTGAGGAT 360
consensus_14464#1      ------------------------------------------------------------
                                                                                   

consensus_14464#2      ------------------------------------------------------------
consensus_14464#3      ------------------------------------------------------------
consensus_14464#0      CAATTCGCAGTACATCCCGGCCAAGGCCTTCAAATCACGCAAGGTTTATTACACTAACGA 420
consensus_14464#1      ------------------------------CAGAGGCGAGGCAAGGGGGTTCACTACCGA 30
                                                                                   

consensus_14464#2      ------------------------------------------------------------
consensus_14464#3      ------------------------------------------------------------
consensus_14464#0      GGAAAACGGATTGCTTCATGTCCCGAAAGAGGAAGCACAGAAAGCTCAGGCTGCCATGTT 480
consensus_14464#1      GGACAACGGATTGCTTCATGTCCCGAAAGAGGAAGCACAGAAAGCTCAGGGTGCCATGTT 90
                                                                                   

consensus_14464#2      ------------------------------------------------------------
consensus_14464#3      ------------------------------------------------------------
consensus_14464#0      TTCAGATCCAAACATGGCCATGGACATGATGAAGAAGAACCTCTCTATGATAGTTCCTCA 540
consensus_14464#1      TTTAGATCCAAACATGGCCATGGACATGATGAAGAAGAACCTCTCTATGATGGTTCCTCA 150
                                                                                   

consensus_14464#2      ------------------------------------------------------------
consensus_14464#3      ------------------------------------------------------------
consensus_14464#0      GACACTTACATTTGCATGGGTGAACTTCTTCTTTTCGGGTTTTGTTGCAGCTAAGATTCC 600
consensus_14464#1      GACACTTACATTTGCATGGGTGAACTTCTTCTTTTCAGGTTTTGTTGCAGCTAAGATTCC 210
                                                                                   

consensus_14464#2      ------------------------------------------------------------
consensus_14464#3      ------------------------------------------------------------
consensus_14464#0      CTTTCCATTGACTCCGCGATTCAGGGGAATGCTGCAAAACGGGATAGACCTGAGTACTGT 660
consensus_14464#1      CTTTCCATTGACTCCGCGATTCAGGGGAATGCTGCAAAACGGGATAGACCTGAGTACTGT 270
                                                                                   

consensus_14464#2      ------------------------------------------------------------
consensus_14464#3      ------------------------------------------------------------
consensus_14464#0      TGATGTGAGCTATGTTAGCAGCCGTTCATGGTACTTTCTCAATTTGTTTGGTTTGAGGGG 720
consensus_14464#1      TGATGTGAGCTATGTTAGCAGCCGTTCATGGTACTTTCTCAATTTGTTTGGTTTGAGGGG 330
                                                                                   

consensus_14464#2      ------------------------------------------------------------
consensus_14464#3      ------------------------------------------------------------
consensus_14464#0      TCTCTTCAGTCTGATCCTCGGTGAAGAAAATGCTAATGATGATGCACAAAAGATGATGCA 780
consensus_14464#1      TCTCTTCAGTTTGATCCTCGGTGAAGAAAATGCTAATGATGATGCCCAAAAGATGATGCA 390
                                                                                   

consensus_14464#2      ------------------GAACTGGCTGTTTCAGGGTTTGGCCGCAGAGAAAGACAACCT 42
consensus_14464#3      ------------------------------------------------------------
consensus_14464#0      GATGGGTGGGGGATTTGGCGGTAATCCCACAATGGGTTTGGCCGCAGAGAAAGACAACCT 840
consensus_14464#1      GATGGGTGGGGGATTTGGCGGTAATCCCACAATGGGTTTGGCCGCAGAGAAAGACAACCT 450
                                                                                   

consensus_14464#2      GGATATAATCCAGCATGACTGGGCTTTACCAAAGATGGAGCATCATGCTGAGGAAGTGCT 102
consensus_14464#3      -----------AGCATGATTGGGCTTTACCAAAGATGGAGCTTCATGTTGAGGAAGTGTT 49
consensus_14464#0      GGATATAATCCAGCATGACTGGGCTTTACCAAAGATGGAGCATCATGCTGAGGAAGTGCT 900
consensus_14464#1      GGATATAATCCAGCATGGCTGGGCTTTACCAAAGATGGAGCATCATGCTGAGGAAGTGCT 510
                                  ******  ********************** ***** ********** *

consensus_14464#2      GAGGAAGCTTCTGAAGAAATGATAGGAAACTAGGCTGCTCCAATGCATTACTACATCTTG 162
consensus_14464#3      GAGGAAGTTTTTGAAGAAATGATAGGAAATTAGGTTGCTCCAATGCATAAAAACATCTTG 109
consensus_14464#0      GAGGAAGCTTCTGAAGAAATGATAGGAAACTAGGCTGCTCCAATGCATTACTACATCTTG 960
consensus_14464#1      GAGGAAGCTTTTGAAGAAATGATAGGAAACTAGGCTGCTCCAATGCATTAATACATCTTG 570
                       ******* ** ****************** **** ************* *  ********

consensus_14464#2      CAAAATTTTTGTTTTAACCTGTTTATTGACCAGACAGTTAAAACTTTGTATCTGTATAAC 222
consensus_14464#3      CAAAATTTTTGTTTAAACCTGTTTATTGCCCAAAAAGTTAAAACTTTGTATCTGTATAAC 169
consensus_14464#0      CAAAATTTTTGTTTTAACCTGTTTATTGACCAGACAGTTAAAACTTTGTATCTGTATAAC 1020
consensus_14464#1      CAAAATTTTTGTTTTAACCTGTTTATTGACCAGACAGTTAAAACTTTGTATCTGTATAAC 630
                       ************** ************* *** * *************************

consensus_14464#2      TTATGGCCAAGAGTTTCCTTCAGAAAGTTTATGTATCATTTTTCTGTTATACGGACCACA 282
consensus_14464#3      TTAGGGCCAAGAATTTCCTTCAAAAAGTTTAGGTATCATTTTTCTGTTATAGGGCCCCCA 229
consensus_14464#0      TTATGGCCAAGAATTTCCTTCAGAAAGTTTATGTATCATTTTTCTGTTATACGGACCACA 1080
consensus_14464#1      TTATGGCCAAGAATTTCCTTCAGAAAGTTTATGTATCATTTTTCTGTTAAAAAAAAAAAA 690
                       *** ******** ********* ******** ***************** *        *

consensus_14464#2      GCCAGGCTCAATGCAGAATGAACAAAAATCTTTTTTCT-TGGCAAAGAGGTACTGACTCA 341
consensus_14464#3      GCCAGGTTCAATGCAGAATGACCAAAATTTTTTTTTTTGTGGCAAA-------------- 275
consensus_14464#0      GCCAGGCTCAATGCAGAATGAACAAAAATCTTTTTTCT-TGGCAAAAAGGTACTGACTCA 1139
consensus_14464#1      AAAA-------------------------------------------------------- 694
                          *                                                        

consensus_14464#2      GTAAATTTGATTGCANAAAAAAAAAAAA 369
consensus_14464#3      ----------------------------
consensus_14464#0      GTAA------------------------ 1143
consensus_14464#1      ----------------------------