These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14468#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 598 fasta sequence [AGCCGCTTCTTCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCGCGA-T-G-AGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG-AAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCAT-GGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCT-GGAGTTATCTGTCAGCAAAAAAAAAAAAAAAAATTCTCTGTAAGAGAAGCTGTTCATCTGCGATTGTGATTGTGGAGATCTGAATTTTTTTGCTTCTTTCCAGTAATCCAGTGACAGTTTGCGTCTTGATTATTTTGCATTCTGTCGGAGTCTCTAAGATAGCTTGTTTTTGTCATTTTGAATTGGTATTCAGTTTCGGATACCATTCAGAGATTGCGAAAAATGCATTCAGATAGCTTGTCTTAAAAAAAA] [+] EMBL AK103216 [AGCCGCTTCTTCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCGCGA T G AGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG AAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCAT GGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCT GGA ] [+] EMBL C27867 [ TTCTTCTCCAGACCTTGGAGCTCGCCGTCA GGAGGGAGAGGAAGGACAGAGGTGAGCGGCG GNCCNGT T GNAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG AAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTA ] [+] EMBL AU076118 [ CTTCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCG CGGGT TNG AGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG AAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCAT GGGAGTAATTGATTGTACTTGACAGCAATGTTTCCATAATTCTATTACCTGGGAGTTATCTGTCAGCAAAAAAAAAA ] [+] EMBL AU032365 [ TTCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCGCGA T G AGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTNACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG AAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCAT GGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCT GGAGTTATCTGTCAGCAAAAAAA ] [+] EMBL AU063259 [ TCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCG GANTNG AGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG AAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCAT GGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCT GGAGTTATCTGTCA AAAAAA ] [+] EMBL BE607480 [ TGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCGCGA T G AGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG AAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCAT GGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCT GGAGTTATC ] [+] EMBL OSC25231 [ GGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCG CGANN TNG AGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG AAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCAT GGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCT GGAGTTATCTGTCAGCAAAAAA ] [+] EMBL AU164818 [ AGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG AAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCAT GGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCT GGAGTTATCTGTCAAAAAAAAAAAAAAAAAAAA ] [+] EMBL CB000124 [ AGGCAGAGATCCAAGTAATCCCATAGGCGATCGCCTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAGAAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCAT GGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCT GGAGTTATCTGTCAGCAATTCTCATTGTGTCTCTTCTCTGTAAGAGAAGCTGTTCATCTGCGATTGTGATTGTGGAGATCTGAATTTTTTTGCTTCTTTCCAGTAATCCAGTGACAGTTTGCGTCTTGATTATTTTGCATTCTGTCGGAGTCTCTAAGATAGCTTGTTTTTGTCATTTTGAATTGGTATTCAGTTTCGGATACCATTCAGAGATTGCGAAAAATGCATTCAGATAGCTTGTCTTAAAAAAAA] [+] EMBL OSC252317 [ TCCAAGTAANCCCATAGNCGATCGACTGATGNAGGAGGAGAAANCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG AAAAAAAACTAANCAATGTACTTCTCTTGATCTTTGTCAT GGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCT GGNGTTATCTGTCNNNAAAAAA ] consensusID : consensus_14468#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 358 fasta sequence [TCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCTGGAGTTAAAAAAAAAAAAAAAA] [+] EMBL BE039663 [TCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCTGGAGTTAAAAAAAAAAAAAAAA] [+] EMBL CA756772 [TCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCTGGAGTTAAAAAAAAAAA ] consensusID : consensus_14468#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 346 fasta sequence [TCTTCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTAAAAAAAAAAA] [+] EMBL AU098299 [TCTTCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTAAAAAAAAAAA] [+] EMBL AU160982 [TCTTCTCCAGACCTTGGAGCTCGCCNTCAGGGAGGGAGAGGAAGGACAGAGNTGAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGNTCAAGAGGAAGCNCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTNCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTAAAAAAAAAAA] [-] EMBL AU225247 [ GCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATagcggc ] [-] EMBL AU225280 [ GAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGANTGATGGAGGAGGAGAAAGCGTNTTNGGCTCTCACTGNTGTCATCTCATCTATTTAAGTTNTTTAGNTTCCTCTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATagcggc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14468#0 AGCCGCTTCTTCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGT 60 consensus_14468#1 ----------TCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGT 50 consensus_14468#2 -------TCTTCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGT 53 ************************************************** consensus_14468#0 GAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAG 120 consensus_14468#1 GAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAG 110 consensus_14468#2 GAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAG 113 ************************************************************ consensus_14468#0 AGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGA 180 consensus_14468#1 AGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGA 170 consensus_14468#2 AGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGA 173 ************************************************************ consensus_14468#0 GGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTT 240 consensus_14468#1 GGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTT 230 consensus_14468#2 GGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTT 233 ************************************************************ consensus_14468#0 TCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGA 300 consensus_14468#1 TCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGA 290 consensus_14468#2 TCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGA 293 ************************************************************ consensus_14468#0 GTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCTGGAGTTATCTGTCA 360 consensus_14468#1 GTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCTGGAGTTA------- 343 consensus_14468#2 GTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTAAAAAAAAAAA------- 346 ******************************************* * * consensus_14468#0 GCAAAAAAAAAAAAAAAAATTCTCTGTAAGAGAAGCTGTTCATCTGCGATTGTGATTGTG 420 consensus_14468#1 --AAAAAAAAAAAAAAA------------------------------------------- 358 consensus_14468#2 ------------------------------------------------------------ consensus_14468#0 GAGATCTGAATTTTTTTGCTTCTTTCCAGTAATCCAGTGACAGTTTGCGTCTTGATTATT 480 consensus_14468#1 ------------------------------------------------------------ consensus_14468#2 ------------------------------------------------------------ consensus_14468#0 TTGCATTCTGTCGGAGTCTCTAAGATAGCTTGTTTTTGTCATTTTGAATTGGTATTCAGT 540 consensus_14468#1 ------------------------------------------------------------ consensus_14468#2 ------------------------------------------------------------ consensus_14468#0 TTCGGATACCATTCAGAGATTGCGAAAAATGCATTCAGATAGCTTGTCTTAAAAAAAA 598 consensus_14468#1 ---------------------------------------------------------- consensus_14468#2 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||