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Oryza sativa
cluster # 14468 cluster # 14468       Sequences # 16       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14468#0 length = 598 sequences # 10  
consensus_14468#1 length = 358 sequences # 2  
consensus_14468#2 length = 346 sequences # 4  

consensusID : consensus_14468#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 598
fasta sequence
                              [AGCCGCTTCTTCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCGCGA-T-G-AGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG-AAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCAT-GGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCT-GGAGTTATCTGTCAGCAAAAAAAAAAAAAAAAATTCTCTGTAAGAGAAGCTGTTCATCTGCGATTGTGATTGTGGAGATCTGAATTTTTTTGCTTCTTTCCAGTAATCCAGTGACAGTTTGCGTCTTGATTATTTTGCATTCTGTCGGAGTCTCTAAGATAGCTTGTTTTTGTCATTTTGAATTGGTATTCAGTTTCGGATACCATTCAGAGATTGCGAAAAATGCATTCAGATAGCTTGTCTTAAAAAAAA]

[+] EMBL AK103216             [AGCCGCTTCTTCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCGCGA T G AGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG AAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCAT GGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCT GGA                                                                                                                                                                                                                                                         ]
[+] EMBL C27867               [      TTCTTCTCCAGACCTTGGAGCTCGCCGTCA GGAGGGAGAGGAAGGACAGAGGTGAGCGGCG    GNCCNGT T GNAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG AAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTA                                                                                                                                                                                                                                                                   ]
[+] EMBL AU076118             [        CTTCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCG CGGGT TNG AGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG AAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCAT GGGAGTAATTGATTGTACTTGACAGCAATGTTTCCATAATTCTATTACCTGGGAGTTATCTGTCAGCAAAAAAAAAA                                                                                                                                                                                                                                  ]
[+] EMBL AU032365             [         TTCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCGCGA T G AGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTNACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG AAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCAT GGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCT GGAGTTATCTGTCAGCAAAAAAA                                                                                                                                                                                                                                     ]
[+] EMBL AU063259             [            TCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCG GANTNG AGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG AAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCAT GGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCT GGAGTTATCTGTCA  AAAAAA                                                                                                                                                                                                                                      ]
[+] EMBL BE607480             [                     TGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCGCGA T G AGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG AAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCAT GGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCT GGAGTTATC                                                                                                                                                                                                                                                   ]
[+] EMBL OSC25231             [                      GGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCG CGANN TNG AGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG AAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCAT GGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCT GGAGTTATCTGTCAGCAAAAAA                                                                                                                                                                                                                                      ]
[+] EMBL AU164818             [                                                                                                       AGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG AAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCAT GGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCT GGAGTTATCTGTCAAAAAAAAAAAAAAAAAAAA                                                                                                                                                                                                                           ]
[+] EMBL CB000124             [                                                                                                                                             AGGCAGAGATCCAAGTAATCCCATAGGCGATCGCCTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAGAAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCAT GGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCT GGAGTTATCTGTCAGCAATTCTCATTGTGTCTCTTCTCTGTAAGAGAAGCTGTTCATCTGCGATTGTGATTGTGGAGATCTGAATTTTTTTGCTTCTTTCCAGTAATCCAGTGACAGTTTGCGTCTTGATTATTTTGCATTCTGTCGGAGTCTCTAAGATAGCTTGTTTTTGTCATTTTGAATTGGTATTCAGTTTCGGATACCATTCAGAGATTGCGAAAAATGCATTCAGATAGCTTGTCTTAAAAAAAA]
[+] EMBL OSC252317            [                                                                                                                                                      TCCAAGTAANCCCATAGNCGATCGACTGATGNAGGAGGAGAAANCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAG AAAAAAAACTAANCAATGTACTTCTCTTGATCTTTGTCAT GGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCT GGNGTTATCTGTCNNNAAAAAA                                                                                                                                                                                                                                      ]


>consensus_14468#0 AGCCGCTTCTTCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGT GAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAG AGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGA GGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTT TCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGA GTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCTGGAGTTATCTGTCA GCAAAAAAAAAAAAAAAAATTCTCTGTAAGAGAAGCTGTTCATCTGCGATTGTGATTGTG GAGATCTGAATTTTTTTGCTTCTTTCCAGTAATCCAGTGACAGTTTGCGTCTTGATTATT TTGCATTCTGTCGGAGTCTCTAAGATAGCTTGTTTTTGTCATTTTGAATTGGTATTCAGT TTCGGATACCATTCAGAGATTGCGAAAAATGCATTCAGATAGCTTGTCTTAAAAAAAA



consensusID : consensus_14468#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 358
fasta sequence
                              [TCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCTGGAGTTAAAAAAAAAAAAAAAA]

[+] EMBL BE039663             [TCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCTGGAGTTAAAAAAAAAAAAAAAA]
[+] EMBL CA756772             [TCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCTGGAGTTAAAAAAAAAAA     ]


>consensus_14468#1 TCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCG CCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCC GAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAA GCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTA AGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGAGTAATTGATT GTACTGGACAGCAATGTTTCCATAATTCTATTACCTGGAGTTAAAAAAAAAAAAAAAA



consensusID : consensus_14468#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 346
fasta sequence
                              [TCTTCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTAAAAAAAAAAA]

[+] EMBL AU098299             [TCTTCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTAAAAAAAAAAA]
[+] EMBL AU160982             [TCTTCTCCAGACCTTGGAGCTCGCCNTCAGGGAGGGAGAGGAAGGACAGAGNTGAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGNTCAAGAGGAAGCNCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTNCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTAAAAAAAAAAA]
[-] EMBL AU225247             [                                                                             GCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATagcggc           ]
[-] EMBL AU225280             [                                                                                           GAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGANTGATGGAGGAGGAGAAAGCGTNTTNGGCTCTCACTGNTGTCATCTCATCTATTTAAGTTNTTTAGNTTCCTCTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATagcggc           ]


>consensus_14468#2 TCTTCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGC GCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGC GCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAG AAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTA GTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGAGTAATTG ATTGTACTGGACAGCAATGTTTCCATAATTCTATTAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14468#0      AGCCGCTTCTTCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGT 60
consensus_14468#1      ----------TCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGT 50
consensus_14468#2      -------TCTTCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGT 53
                                 **************************************************

consensus_14468#0      GAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAG 120
consensus_14468#1      GAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAG 110
consensus_14468#2      GAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAG 113
                       ************************************************************

consensus_14468#0      AGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGA 180
consensus_14468#1      AGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGA 170
consensus_14468#2      AGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGA 173
                       ************************************************************

consensus_14468#0      GGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTT 240
consensus_14468#1      GGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTT 230
consensus_14468#2      GGAGGAGAAAGCGTCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTT 233
                       ************************************************************

consensus_14468#0      TCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGA 300
consensus_14468#1      TCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGA 290
consensus_14468#2      TCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGTCATGGGA 293
                       ************************************************************

consensus_14468#0      GTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCTGGAGTTATCTGTCA 360
consensus_14468#1      GTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCTGGAGTTA------- 343
consensus_14468#2      GTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTAAAAAAAAAAA------- 346
                       *******************************************     *   *       

consensus_14468#0      GCAAAAAAAAAAAAAAAAATTCTCTGTAAGAGAAGCTGTTCATCTGCGATTGTGATTGTG 420
consensus_14468#1      --AAAAAAAAAAAAAAA------------------------------------------- 358
consensus_14468#2      ------------------------------------------------------------
                                                                                   

consensus_14468#0      GAGATCTGAATTTTTTTGCTTCTTTCCAGTAATCCAGTGACAGTTTGCGTCTTGATTATT 480
consensus_14468#1      ------------------------------------------------------------
consensus_14468#2      ------------------------------------------------------------
                                                                                   

consensus_14468#0      TTGCATTCTGTCGGAGTCTCTAAGATAGCTTGTTTTTGTCATTTTGAATTGGTATTCAGT 540
consensus_14468#1      ------------------------------------------------------------
consensus_14468#2      ------------------------------------------------------------
                                                                                   

consensus_14468#0      TTCGGATACCATTCAGAGATTGCGAAAAATGCATTCAGATAGCTTGTCTTAAAAAAAA 598
consensus_14468#1      ----------------------------------------------------------
consensus_14468#2      ----------------------------------------------------------
                                                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)