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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14469#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1903 fasta sequence
[AGCTGACGGCGGACGTGCTCGCCTCTTCTCCGGCTCTCTCTCTCTTCTCCTCCTCCTCATCTCGGCAAAACCACCACCGCATTGCCGGTATATTTAGTTAAGCCGCGATAGAGGAGGGAGGGATAGCGTAGAGGGAGAGGGAACAGGGGAGGGTGGCGAGCTCCTGACCATCTCTCTCCGCCCTCTCCGTTTCGCCGCTCCTCGCCGGATCCATCTCCAAAAGAGGACGTCGGAGAAGATGATGGGCGGATTCCTCTCCCGGGTCCTCCTGTTGGCCTTTGGCTACGCCTATCCAGCATATGAGTGCTACAAGACTGTCGAACTGAATAAACCAGAGATTGAGCAGCTCATATTTTGGTGTCAGTATT-GGA-TTCTAGTAGCTCTGATGA-CGGTT-ATGGAGAGA-TTTGGA-GA-TTTTAC-AATAT-CAT-GGCTA-CCA-TTTTACTC--GGAAGC--AAAGCTGAT--GT-TCTTT-ATATACTTGTGGTACCCTAAGACAAAGGGAACTACCTACATTTATGGGACTTTCTTTAGGCCATATATTTCACAGCATGAGAATGAAATTGACCGTAATTTGCTTGAGTTGAGAGCTCGAGCCACCGATGTAGTTGTCCTTTATTTTCAAAAGGCTGCTACTGTAGGACAGAATACATTCTTT-GACGTTTTGAAGTATGTTGCTTCGCAATCACCATCTCAGAGGTCAAGTCAACAACCTTCTCAGGTACTAACATGCTTCTCTTCTTCAAAGCTGTTCACTGAACAAACTCATTTGCTTTTAACCACTGGAATTACCGAATTCACCATTTCTGTGCAGTCGCTAATGCTCAAGTTTTCCGGTGCTCTTCTAAAGCAATTCTATCCATGTTGTCTTGCTAGTTTGTTAGCTATATGTTTTTTTTTTATGCAAGACGCCTTTACTATTACTGCAGTACTGCCATCACATGTAGACTTGGTGTCTGCAGCTACTTTCTCTATAAACTATAGAAACAGGAATAATTTATAAGTCCATTTTACACAACCACCAAGGTCATAGGCCTTTGTACTGAGCATCGGCATGAGGTGTGAGCATATAAGCTTTCTAGAAAAGCCACCACTAATTTGCTGAGTCTGCAAGCTATATGTTGGTTTATAGTACCATGTTAAAGTTTCTTTATGACTGATTTTAGATATGCACATCCTAGATTTTTTTTTATTTTTATTTTTGCAATTACTAAGGGCCCGTTTGGTAGAGCTCCAACTCCTAAATTTAACTCTAGGAGTTGGGTCTGGAATAGAGTTGTGGAGCAGTCTAAACCCGGCTCCACCTCTCTAGTTCATTTTGTGAGAGCGTTGCACCCAGCTCTACTCCCATTTTAGGTGGAGTTGAAACTGTTTGGCTGAGCTTCAGCTCCAGGAGAGGTGGAGCTGGAGCTATGCCAAACATGCTCTTACACACATCCTAGTTAATGGTATGGTGACGTAAAAACTTCTTCCTGATTTCATCGAGCTATATATGTTCTAAAAAATATGTGTGCATATCTGGGATTACAATATACACCTTCTTGGGAACATCCATATCTAATCCTTGGTAATGCAACAATGTCTCTTTCTACTGCTACATAAACACATGTCCAATTTGACCGGGAGTATTAATATGACAATCCATTTGGCATTGTGTTGGCTTTGGAAATGAGTCAATTACTACTTCCTCCTTTTCTTTTCATACTCTGTACATTGTAATTAGTTGAAAGTGTGATTGTTTAGTAACTGAATTTAACGCCACCTGAAAAGACAAAATCTTATTGGAATGAAATATGTGTTTAAGCATCAAAGTTTTACAGCCTAACAGGTCAGCAACTGCAAACTGGCGACTAGATTTTCGCAAGGTTTCTAAAGGGTTCGGTAGCATTATCTTTCAACACTAGTTGGGCTGTAC]
[+] EMBL AK068940 [AGCTGACGGCGGACGTGCTCGCCTCTTCTCCGGCTCTCTCTCTCTTCTCCTCCTCCTCATCTCGGCAAAACCACCACCGCATTGCCGGTATATTTAGTTAAGCCGCGATAGAGGAGGGAGGGATAGCGTAGAGGGAGAGGGAACAGGGGAGGGTGGCGAGCTCCTGACCATCTCTCTCCGCCCTCTCCGTTTCGCCGCTCCTCGCCGGATCCATCTCCAAAAGAGGACGTCGGAGAAGATGATGGGCGGATTCCTCTCCCGGGTCCTCCTGTTGGCCTTTGGCTACGCCTATCCAGCATATGAGTGCTACAAGACTGTCGAACTGAATAAACCAGAGATTGAGCAGCTCATATTTTGGTGTCAGTATT GGA TTCTAGTAGCTCTGATGA CGGTT ATGGAGAGA TTTGGA GA TTTTAC AATAT CAT GGCTA CCA TTTTACTC GGAAGC AAAGCTGAT GT TCTTT ATATACTTGTGGTACCCTAAGACAAAGGGAACTACCTACATTTATGGGACTTTCTTTAGGCCATATATTTCACAGCATGAGAATGAAATTGACCGTAATTTGCTTGAGTTGAGAGCTCGAGCCACCGATGTAGTTGTCCTTTATTTTCAAAAGGCTGCTACTGTAGGACAGAATACATTCTTT GACGTTTTGAAGTATGTTGCTTCGCAATCACCATCTCAGAGGTCAAGTCAACAACCTTCTCAGGTACTAACATGCTTCTCTTCTTCAAAGCTGTTCACTGAACAAACTCATTTGCTTTTAACCACTGGAATTACCGAATTCACCATTTCTGTGCAGTCGCTAATGCTCAAGTTTTCCGGTGCTCTTCTAAAGCAATTCTATCCATGTTGTCTTGCTAGTTTGTTAGCTATATGTTTTTTTTTTATGCAAGACGCCTTTACTATTACTGCAGTACTGCCATCACATGTAGACTTGGTGTCTGCAGCTACTTTCTCTATAAACTATAGAAACAGGAATAATTTATAAGTCCATTTTACACAACCACCAAGGTCATAGGCCTTTGTACTGAGCATCGGCATGAGGTGTGAGCATATAAGCTTTCTAGAAAAGCCACCACTAATTTGCTGAGTCTGCAAGCTATATGTTGGTTTATAGTACCATGTTAAAGTTTCTTTATGACTGATTTTAGATATGCACATCCTAGATTTTTTTTTATTTTTATTTTTGCAATTACTAAGGGCCCGTTTGGTAGAGCTCCAACTCCTAAATTTAACTCTAGGAGTTGGGTCTGGAATAGAGTTGTGGAGCAGTCTAAACCCGGCTCCACCTCTCTAGTTCATTTTGTGAGAGCGTTGCACCCAGCTCTACTCCCATTTTAGGTGGAGTTGAAACTGTTTGGCTGAGCTTCAGCTCCAGGAGAGGTGGAGCTGGAGCTATGCCAAACATGCTCTTACACACATCCTAGTTAATGGTATGGTGACGTAAAAACTTCTTCCTGATTTCATCGAGCTATATATGTTCTAAAAAATATGTGTGCATATCTGGGATTACAATATACACCTTCTTGGGAACATCCATATCTAATCCTTGGTAATGCAACAATGTCTCTTTCTACTGCTACATAAACACATGTCCAATTTGACCGGGAGTATTAATATGACAATCCATTTGGCATTGTGTTGGCTTTGGAAATGAGTCAATTACTACTTCCTCCTTTTCTTTTCATACTCTGTACATTGTAATTAGTTGAAAGTGTGATTGTTTAGTAACTGAATTTAACGCCACCTGAAAAGACAAAATCTTATTGGAATGAAATATGTGTTTAAGCATCAAAGTTTTACAGCCTAACAGGTCAGCAACTGCAAACTGGCGACTAGATTTTCGCAAGGTTTCTAAAGGGTTCGGTAGCATTATCTTTCAACACTAGTTGGGCTGTAC]
[+] EMBL CB652375 [ TCTCCGGCTCTCTCTCTCTTCTCCTCCTCCTCATCTCCGCAAAACCACCACCGCATTGCCGGTATATTTAGTTAAGCCGCGATAGAGGAGGGAGGGATAGCGTAGAGGGAGAGGGAACAGGGGAGGGTGGCGAGCTCCTGACCATCTCTCTCCGCCCTCTCCGTTTCGCCGCTCCTCGCCGGATCCATCTCCAAAAGAGGACGTCGGAGAAGATGATGGGCGGATTCCTCTCCCGGGTCCTCCTGTTGGCCTTTGGCTACGCCTATCCAGCATATGAGTGCTACGAGACTGTCGAACTGAATAAACCAGAGATTGAGCAGCTCATATTTTGGTGTCAGTATT GGA TTCTAGTAGCTCTGATGA CGGTT ATGGAGAGA TTTGGA GA TTTTAC AATAT CAT GGCTA CCA TTTTACTC GGAAGC AAAGCTGAT GT TCTTT ATATACTTGTGGTACCCTAAGACAAAGGGAACTACCTACATTTATGGGACTTTCTTTAGGCCATATATTTCACAGCATGAGAATGAAATTGACCGTAATTTGCTTGAGTTGAGAGCTCGAGCCACCGATGTAGTTGTCCTTTATTTTCAAAAGGCTGCTACTGTAAGACAGAATACATTCTTTGGACGTTTTGA ]
[+] EMBL OSS3878A [ tnCATCTCGGCAAAACCACCACCGCATTGCCGGTATATTTAGTTAAGCCGCGATAGAGGAGGGAGGGATAGCGTAGAGGGAGAGGGAACAGGGGAGGGTGGCGAGCTCCTGACCATCTCTCTCCGCCCTCTCCGTTTCGCCGCTCCTCGCCGGATCCATCTCCAAAAGAGGACGTCGGAGAAGATGATGGGCGGATTCCTCTCCCGGGTCCTCCTGTTGGCCTTTGGCTACG CTATCCA ]
[+] EMBL OSS4366A [ ATCTCGGCAAAACCACCACCGCATTGCCGGTATATTTAGTTAAGCCGCGATAGAGGAGGGAGGGATAGCGTAGAGGGAGAGGGAACAGGGGAGGGTGGCGAGCTCCTGACCATCTCTCTCCGCCCTCTCCGTTTCGCCGCTCCTCGCCGGATCCATCTCCAAAAGAGGACGTCGGAGAAGATGATGGGCGGATTCCTCTCCCGGGTCCTCCTGTTGGCCTTTGGCTACG CTATCCAGCATATGAGTGCTACAAGACTGTCGAACTGAATAAACCAGAGATTGAGCAGCTCATATTTTGGTGTCAGTATT GGA TTCTAGTAGCTCTGATGA CGGTT ATGGAGAGA TTTGGA GA TTTTAC AATAT CAT GGCTA CCA TTTTACTC GGAAG AAAG TGGT TG TC TT ATATACTTGTGG A CCTAAG C AAGGG ACTACCTACA TTATG ]
[+] EMBL OSS3372A [ ATCTCGGCAAAACCACCACCGCATTGCCGGTATATTTAGTTAAGCCGCGATAGAGGAGGGAGGGATAGCGTAGAGGGAGAGGGAACAGGGGAGGGTGGCGAGCTCCTGACCATCTCTCTCCGCCCTCTCCGTTTCGCCGCTCCTCGCCGGATCCATCTCCAAAAGAGGACGTCGGAGAAGATGATGGGCGGATTCCTCTCCCGGGTCCTCCTGTTGGCCTTTGGCTACGCCTATCCAGCATATGAGTGCTACAAGACTGTCGAACTGAATAAACCAGAGATTGAGCAGCTCATATTTTGGTGTCAGTATTGGGATTTCTAGTAGCTCTGATGACCGGTTAATGGAGAGATTTTGGAGGATTTTTACAAATATCCATNGGCTACCCATTTTTACTCGGGGAAGCAAAAAGNTGATTGGTCCCTTTNATAa ]
[+] EMBL OSS4354A [ ATCTCGGCAAAACCACCACCGCATTGCCGGTATATTTAGTTAAGCCGCGATAGAGGAGGGAGGGATAGCGTAGAGGGAGAGGGAACAGGGGAGGGTGGCGAGCTCCTGACCATCTCTCTCCGCCCTCTCCGTTTCGCCGCTCCTCGCCGGATCCATCTCCAAAAGAGGACGTCGGAGAAGATGATGGGCGGATTCCTCTCCCGGGTCCTCCTGTTGGCCTTTGGCTACG CTATCCAGCATATGAGTGCTACAAG CTGTCGAACTTNATAAACCAGAGATTGAGCAGCTCATAT ]
consensusID : consensus_14469#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1435 fasta sequence
[GCGATAGAGGAGGGAGGGATAGCGTAGAGGGAGAGGGAACAGGGGAGGGTGGCGAGCTCCTGACCATCTCTCTCCGCCCTCTCCGTTTCGCCGCTCCTCGCCGGATCCATCTCCAAAAGAGGACGTCGGAGAAGATGATGGGCGGATTCCTCTCCCGGGTCCTCCTGTTGGCCTTTGGCTACGCCTATCCAGCATATGAGTGCTACAAGACTGTCGAACTGAATAAACCAGAGATTGAGCAGCTCATATTTTGGTGTCAGTATTGGATTCTAGTAGCTCTGATGACGGTTATGGAGAGATTTGGAGATTTTACAATATCATGGCTACCATTTTACTCGGAAGCAAAGCTGATGTTCTTTATATACTTGTGGTACCCTAAGACAAAGGGAACTACCTACATTTAT-GGGACTTTCTTTA-GGCCATATA-TTTCACAGCATGAGAATGAAATTGACCGTAATTTGCTTGAGTTGAGAGCTCGAGCCACCGATGTAGTTGTCCTTTATTTTCAAAAGGCTGCTACTGTAGGACAGAATACATTCTTTGGCGTTTTGAAGTATGTTGCTTCGCAATCACCATCTCAGAGGTCAAGTCAACAACCTTCTCAGGAGCCGCAACAACCAAAACAACAGCAGGCACCAGTACAGCAGCAGCCGACACAAAAACAAGCACCAACTGTTTTGCGCAGATCAGCATCTATTGCTGCTCGGCAAGCTGCAATGGCACAGCAGTCTCAGGATGCCAAGACGGTTCCATCTTCCCCCAAGATCAAGCGCCAAGCATCAACAAAAGCTGCACCTGTGGCATCAACAAAGTTGACCGGAGCTGCAGCTCCGTCAACACCAAAATCTGATGCCGACGCACCAAAGAAAAATGAGGCGGCGCCAGCTTCCTTGCAAGTGGCAACTCCAGCAACAAAGGCCGATGTACCAGCATCTGAACCTAGTGCTCCACTCCCTGAAGCCGAAGAAGCTGACAAGATGGCCATTGACGAGGCTGATGATGCCGTAGA-GGGCAC-AGAAGA-GGGTGAT-CCTGTTCCAGGTGAGACAGTAGAGGAGAGA-CCAATGGAGGAGACGATCCGTGTGACTCGCT-CCAAGC-TAAGG-A-GGCGTACTGC-TT-CTGAGGATCCTGCAGG-AAATTAAC-AG-CAATCCATTCTTTTTGTTGCATGTTGTGCTGTTCATTTTCTTTTTAAGTTTTAGATTGTCATGTTGTTTGGTGCATGTGGG-AAATGTGTTGGTCTAATTGATCGTTCTGTTGCCCAAGAGTTTGTCATCTCGTTTTCTGTGTTGCTAGCATGTTTGTGTGCTTGGAAGTTGTAAATAGCACCGTGCATGTATGTATATATCAATTGGTGGCATGGCGAGGAATGCCTGTATCTTGAAACATTAGACATTTCAATCAGGTCATTACATGAGCACTCTCTCTGTTGTCTGTTAAAAAA]
[+] EMBL AK058393 [GCGATAGAGGAGGGAGGGATAGCGTAGAGGGAGAGGGAACAGGGGAGGGTGGCGAGCTCCTGACCATCTCTCTCCGCCCTCTCCGTTTCGCCGCTCCTCGCCGGATCCATCTCCAAAAGAGGACGTCGGAGAAGATGATGGGCGGATTCCTCTCCCGGGTCCTCCTGTTGGCCTTTGGCTACGCCTATCCAGCATATGAGTGCTACAAGACTGTCGAACTGAATAAACCAGAGATTGAGCAGCTCATATTTTGGTGTCAGTATTGGATTCTAGTAGCTCTGATGACGGTTATGGAGAGATTTGGAGATTTTACAATATCATGGCTACCATTTTACTCGGAAGCAAAGCTGATGTTCTTTATATACTTGTGGTACCCTAAGACAAAGGGAACTACCTACATTTAT GGGACTTTCTTTA GGCCATATA TTTCACAGCATGAGAATGAAATTGACCGTAATTTGCTTGAGTTGAGAGCTCGAGCCACCGATGTAGTTGTCCTTTATTTTCAAAAGGCTGCTACTGTAGGACAGAATACATTCTTTGGCGTTTTGAAGTATGTTGCTTCGCAATCACCATCTCAGAGGTCAAGTCAACAACCTTCTCAGGAGCCGCAACAACCAAAACAACAGCAGGCACCAGTACAGCAGCAGCCGACACAAAAACAAGCACCAACTGTTTTGCGCAGATCAGCATCTATTGCTGCTCGGCAAGCTGCAATGGCACAGCAGTCTCAGGATGCCAAGACGGTTCCATCTTCCCCCAAGATCAAGCGCCAAGCATCAACAAAAGCTGCACCTGTGGCATCAACAAAGTTGACCGGAGCTGCAGCTCCGTCAACACCAAAATCTGATGCCGACGCACCAAAGAAAAATGAGGCGGCGCCAGCTTCCTTGCAAGTGGCAACTCCAGCAACAAAGGCCGATGTACCAGCATCTGAACCTAGTGCTCCACTCCCTGAAGCCGAAGAAGCTGACAAGATGGCCATTGACGAGGCTGATGATGCCGTAGA GGGCAC AGAAGA GGGTGAT CCTGTTCCAGGTGAGACAGTAGAGGAGAGA CCAATGGAGGAGACGATCCGTGTGACTCGCT CCAAGC TAAGG A GGCGTACTGC TT CTGAGGATCCTGCAGG AAATTAAC AG CAATCCATTCTTTTTGTTGCATGTTGTGCTGTTCATTTTCTTTTTAAGTTTTAGATTGTCATGTTGTTTGGTGCATGTGGG AAATGTGTTGGTCTAATTGATCGTTCTGTTGCCCAAGAGTTTGTCATCTCGTTTTCTGTGTTGCTAGCATGTTTGTGTGCTTGGAAGTTGTAAATAGCACCGTGCATGTATGTATATATCAATTGGTGGCATGGCGAGGAATGCCTGTATCTTGAAACATTAGACATTTCAATCAGGTCA ]
[+] EMBL C71951 [ AACAGGGGAGGGTGGCGAGCTCCTGACCATCTCTCTCCGCCCTCTCCGTTTCGCCGCTCCTCGCCGGATCCATCTCCAAAAGAGGACGTCGGAGAAGATGATGGGCGGATTCCTCTCCCGGGTCCTCCTGTTGGCCTTTGGCTACGCCTATCCAGCATATGAGTGCTACAAGACTGTCGAACTGAATAAACCAGAGATTGAGCAGCTCATATTTTGGTGTCAGTATTGGATTCTAGTAGCTCTGATGACGGTTATGGAGAGATTTGGAGATTTTACAATATCATGGCTACCATTTTACTCGGAAGCAAAGCTGATGTTCTTTATATACTTGTGGTACCCTAAGACAAAAGGGACTACCTACATTTATGGGGNCTTTCTTTAGGGCCATATATTTTCACA ]
[-] EMBL CB652376 [ GACACAAAAACAAGCACCAACTGTTTTGCGCAGATCAGCATCTATTGCTGCTCGGCAAGCTGCAATGGCACAGCAGTCTCAGGATGCCAAGACGGTTCCATCTTCCCCCAAGATCAAGCGCCAAGCATCAACAAAAGCTGCACCTGTGGCATCAACAAAGTTGACCGGAGCTGCAGCTCCGTCAACACCAAAATCTGATGCCGACGCACCAAAGAAAAATGAGGCGGCGCCAGCTTCCTTGCAAGTGGCAACTCCAGCAACAAAGGCCGATGTACCAGCATCTGAACCTAGTGCTCCACTCCCTGAAGCCGAAGAAGCTGACAAGATGGCCATTGACGAGGCTGATGATGCCGTAGA GGGCAC AGAAGA GGGTGAT CCTGTTCCAGGTGAGACAGTAGAGGAGAGA CCAATGGAGGAGACGATCCGTGTGACTCGCT CCAAGC TAAGG A GGCGTACTGC TT CTGAGGATCCTGCAGG AAATTAAC AG CAATCCATTCTTTTTGTTGCATGTTGTGCTGTTCATTTTCTTTTTAAGTTTTAGATTGTCATGTTGTTTGGTGCATGTGGG AAATGTGTTGGTCTAATTGATCGTTCTGTTGCCCAAGAGTTTGTCATCTCGTTTTCTGTGTTGCTAGCATGTTTGTGTGCTTGGGAGTTGTAAATAGCACCGTGCATGTATGTATATATCAATTGGTGGCATGGCGAGGAATGCCTGTATCTTTAAAGGTTAGACATTTCAATCAGGT ]
[+] EMBL AU101063 [ ACAGCAGTCTCAGGATGCCAAGACGNTTCCATCTTCCCCTAAGATCAAGCGCCAAGCATCAACAAAAGCTGCACCTGTGGCATCAACAAAGTTGACCGGAGCTGCAGCTCCGTCAACACCAAAATCTGATGCCGACGCACCAAAGAAAAATGAGGCGGCGCCAGCTTCCTTGCAAGTGGCAACTCCAGCAACAAAGGCCGATGTACCAGCATCTGAACCTAGTGCTCCACTCCCTGAAGCCGAAGAAGCTGACAAGATGGCCATTGACGAGGCTGATGATGCCGTAGA GGGCAC AGAAGA GGGTGAT CCTGTTCCAGGTGAGACAGTAGAGGAGAGA CCAATGGAGGAGACGATCCGTGTGACTCGCT CCAAGC TAAGG A GGCGTACTGC TT CTGAGGATCCTGCAGG AAATTAAC AG CAATCCATTCTTTTTGTTGCATGTTGTGCTGTTCATTTTCTTTTTAAGTTTTAGATTGTCATGTTGTTTGGTGCATGTGGG AAATGTGTTGGTCTAATTGATCGTTCTGTTGCCCAAGAGTTTGTCATCTCGTTTTCTGTGTTGCTAGCATGTTTGTGTGCTTGGAAGTTGTAAATAGCACCGTGCATGTATGTATATATCAATTGGTGGCATGGCGAGGAATGCCTGTATCTTGAAACATTAGACATTTCAATCAGGTCATTACATGAGCAaaaa ]
[+] EMBL AU174325 [ TGATGCCGTAGA GGGCAC AGAAGA GGGTGAT CCTGTTCCAGGTGAGNCAGTAGAGGAGAGA CCAATGGAGGAGACGATCCGTGTGACTCGCT CCAAGC TAAGG A GGCGTACTGC TT CTGAGGATCCTGCAGG AAATTAAC AG CAATCCATTCTTTTTGTTGCATGTTGTGCTGTTCATTTTCTTTTTAAGTTTTAGATTGTCATGTTGTTTGGTGCATGTGGG AAATGTGTTGGTCTAATTGATCGTTCTGTTGCCCAAGAGTTTGTCATCTCGTTTTCTGTGTTGCTAGCATGTTTGTGTGCTTGGAAGTTGTAAATAGCACCGTGCATGTATGTATATATCAATTGGTGGCATGGCGAGGAATGCCTGTATCTTGAAACATTAGACATTTCAATCAGGTCATTACATGAGCACTCTCTCTGTTGTCTGTTAAAAAA]
[+] EMBL AU223179 [ tCCGTAGAGGGGCACAAGAAGAGGGGTGATCCCTGTTCCAGGTGAGACAGTAGAGGAGAGACCCAATGGAGGAGCCGATCCGTGTGACTCGCT CCAAGC TAAGG AGGGCGTACTGC TT TTGAGGATCCTGCAGGAAAATTAAC AG CAATCCATTCTTTTTGTTGCATGTTGTGCTGTTCATTTTCTTTTTAAGTTTTAGATTGTCATGTTGTTTGGTGCATGTGGGAAAATGTGTTGGTCTAATTGATCGTTCTGTTGCCCAAGAGTTTGTCATCTCGTTTTCTGTGTTGCTAGCATGTTTGTGTGCTTGGAAGTTGTAAATAGCACCGTGCATGTATGTATATATCAATTGGTGGCATGGCGAGGAATGCCTGTATCTTGAAACATTAGACATTTCAATCAGGTCATTACATGAGCACTCTCTCTGTTGTCTGTTAAAAAA]
[+] EMBL AU097283 [ GGAGACGATCCGTGTGACTCGNTCCCAAGCTTAAGGAA NGCGTACTGCGTTCCTGAGGATCCTGCAGG AAATTAACTAGCCAATCCATTC TTTTGTTGCATGTTGTGCTGTTCATTTNCTTTTTAAGTTTTAGATTGTCATGTTGTTTGGTGCATGTGGG AAATGTGTTGGTCTAATTGATCGTTCTGTTGCCCAAGAGTTTGTCATCTCGTTTTCTGTGTTGCTAGCATGTTTGTGTGCTTGGAAGTTGTAAATAGCACCGTGCATGTATGTATATATCAATTGGTGGCATGGCGAGGAATGCCTGTATCTTGAAACATTAGACATTTCAATCAGGTCATTACATGAGCACTCTCTCTGTTGTCTGTTAAAA ]
[+] EMBL AU108429 [ GAGACGATCCGTGTGACTCGCT CCAAGC TAAGG A GGCGTACTGC TT CTGAGGATCCTGCAGG AAATTAAC AG CAATCCANTCTTTTTGTTGCATGTTGTGCTGTTCATTTTCTTTTTAAGTTTTAGATTGTCATGTTGTTTGGTGCATGTGGG AAATGTGTTGGTCTAATTGATCGTTCTGTTGCCCAAGAGTTTGTCATCTCGTTTTCTGTGTTGCTAGCATGTTTGTGTGCTTGGAAGTTGTAAATAGCNCCGTGCATGTATGTATATATCAATTGGTGGCATGGCGAGGAATGCCTGTATCTTGAAACATTAGACATTTCAATCAGGTCATTACATGAGCACTCTCTCTGTTGTCTGTTAAAAAA]
consensusID : consensus_14469#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence
[AATTCGGCACGAGCAAAAACAAGCACCAACTGTTTTGCGCAGATCAGCATCTATTGCTGCTCGGCAAGCTGCAATGGCACAGCAGTCTCAGGATGCCAAGACGGTTCCATCTTCCCCCAAGATCAAGCGCCAAGCATCAACAAAAGCTGNCACCTGTGGNCATCAACAAAGTTGAGCCGGAGNCTGCAGCTCNTNCAACACCAAAATCTGATGNCCGAACGCACCAAAGAAAAATGAGGCGGCGCCAGCTTNCCTTGNCAAGTGNCCAACTGCCAGCAACAAAGGNCCGATGTTACCAGCATTCTGGAACCTAGTGGCTCCACTTCCCTGGAAGCCCGAAGAAGCTGGACAAGATGGGCCATTGACGAGGCTGATGATGCCGTAGAGGGCACAGAAGAGGGTGATNCTGGTTTCCAGGTGAGACATGGGGGGGGGGGAAGANCCAATTGGGAAGGAGACGATTCCGTGGTGGACTTCGGCGGCCNAAGGTTNAAGGGAGGCGTACTGNNTTCTTGNAGGATCCCTGGCAGGGAAATTTTAACCAGGNATCCCATTCTTTTTNGGTTGNCATGGTTGGGGCNGTCAATTTTCCTTTTTAAAGTTTTAGAATNGCCANGTTGTTTGGGGCATTTNGGGAATTGGTTGGCCAAATGNCCGNCTGTT]
[+] EMBL AI096158 [AATTCGGCACGAGCAAAAACAAGCACCAACTGTTTTGCGCAGATCAGCATCTATTGCTGCTCGGCAAGCTGCAATGGCACAGCAGTCTCAGGATGCCAAGACGGTTCCATCTTCCCCCAAGATCAAGCGCCAAGCATCAACAAAAGCTGNCACCTGTGGNCATCAACAAAGTTGAGCCGGAGNCTGCAGCTCNTNCAACACCAAAATCTGATGNCCGAACGCACCAAAGAAAAATGAGGCGGCGCCAGCTTNCCTTGNCAAGTGNCCAACTGCCAGCAACAAAGGNCCGATGTTACCAGCATTCTGGAACCTAGTGGCTCCACTTCCCTGGAAGCCCGAAGAAGCTGGACAAGATGGGCCATTGACGAGGCTGATGATGCCGTAGAGGGCACAGAAGAGGGTGATNCTGGTTTCCAGGTGAGACATGGGGGGGGGGGAAGANCCAATTGGGAAGGAGACGATTCCGTGGTGGACTTCGGCGGCCNAAGGTTNAAGGGAGGCGTACTGNNTTCTTGNAGGATCCCTGGCAGGGAAATTTTAACCAGGNATCCCATTCTTTTTNGGTTGNCATGGTTGGGGCNGTCAATTTTCCTTTTTAAAGTTTTAGAATNGCCANGTTGTTTGGGGCATTTNGGGAATTGGTTGGCCAAATGNCCGNCTGTT]
consensusID : consensus_14469#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 328 fasta sequence
[CCCTGAAGCCGAAGAAGCTGACAAGATGGCCATTGACGAGGCTGATGATNCCGTAGAGGGCACAGAAGAGGGTGANTCTGTTCCAGGTGAGACAGTAGAGGAGAGACCAATGGAGGAGACGATCCGTGTGACTCGCTCCAAGCTAAGGAGGCGTACTGCTTCTGAGGATCCTGCAGGAAATTAACAGCAATCCATTCTTTTTGTTGCATGTTGTGCTGTTCATTTTCTTTTTAAGTTTTAGATTGTCATGTTGTTTGGTGCNTGTGGGAAATGTGTTGGTNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C98822 [CCCTGAAGCCGAAGAAGCTGACAAGATGGCCATTGACGAGGCTGATGATNCCGTAGAGGGCACAGAAGAGGGTGANTCTGTTCCAGGTGAGACAGTAGAGGAGAGACCAATGGAGGAGACGATCCGTGTGACTCGCTCCAAGCTAAGGAGGCGTACTGCTTCTGAGGATCCTGCAGGAAATTAACAGCAATCCATTCTTTTTGTTGCATGTTGTGCTGTTCATTTTCTTTTTAAGTTTTAGATTGTCATGTTGTTTGGTGCNTGTGGGAAATGTGTTGGTNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14469#2 ------------------------------------------------------------
consensus_14469#3 ------------------------------------------------------------
consensus_14469#1 ------------------------------------------------------------
consensus_14469#0 AGCTGACGGCGGACGTGCTCGCCTCTTCTCCGGCTCTCTCTCTCTTCTCCTCCTCCTCAT 60
consensus_14469#2 ------------------------------------------------------------
consensus_14469#3 ------------------------------------------------------------
consensus_14469#1 ------------------------------------------------------------
consensus_14469#0 CTCGGCAAAACCACCACCGCATTGCCGGTATATTTAGTTAAGCCGCGATAGAGGAGGGAG 120
consensus_14469#2 ------------------------------------------------------------
consensus_14469#3 ------------------------------------------------------------
consensus_14469#1 ------------------------------------------------------------
consensus_14469#0 GGATAGCGTAGAGGGAGAGGGAACAGGGGAGGGTGGCGAGCTCCTGACCATCTCTCTCCG 180
consensus_14469#2 ------------------------------------------------------------
consensus_14469#3 ------------------------------------------------------------
consensus_14469#1 ------------------------------------------------------------
consensus_14469#0 CCCTCTCCGTTTCGCCGCTCCTCGCCGGATCCATCTCCAAAAGAGGACGTCGGAGAAGAT 240
consensus_14469#2 ------------------------------------------------------------
consensus_14469#3 ------------------------------------------------------------
consensus_14469#1 ------------------------------------------------------------
consensus_14469#0 GATGGGCGGATTCCTCTCCCGGGTCCTCCTGTTGGCCTTTGGCTACGCCTATCCAGCATA 300
consensus_14469#2 ------------------------------------------------------------
consensus_14469#3 ------------------------------------------------------------
consensus_14469#1 ------------------------------------------------------------
consensus_14469#0 TGAGTGCTACAAGACTGTCGAACTGAATAAACCAGAGATTGAGCAGCTCATATTTTGGTG 360
consensus_14469#2 ------------------------------------------------------------
consensus_14469#3 ------------------------------------------------------------
consensus_14469#1 -------------------------GCGATAGAGGAGGGAGGGATAGCGTAGAGGGAGAG 35
consensus_14469#0 TCAGTATTGGATTCTAGTAGCTCTGATGACGGTTATGGAGAGATTTGGAGATTTTACAAT 420
consensus_14469#2 ------------------------------------------------------------
consensus_14469#3 ------------------------------------------------------------
consensus_14469#1 GGAACAGGGGAGGGTGGCGAGCTCCTGACCATCTCTCTCCGCCCTCTCCGTTTCGCCGCT 95
consensus_14469#0 ATCATGGCTACCATTTTACTCGGAAGCAAAGCTGATGTTCTTTATATACTTGTGGTACCC 480
consensus_14469#2 ------------------------------------------------------------
consensus_14469#3 ------------------------------------------------------------
consensus_14469#1 CCTCGCCGGATCCATCTCCAAAAGAGGACGTCGGAGAAGATGATGGGCGGATTCCTCTCC 155
consensus_14469#0 TAAGACAAAGGGAACTACCTACATTTATGGGACTTTCTTTAGGCCATATATTTCACAGCA 540
consensus_14469#2 ------------------------------------------------------------
consensus_14469#3 ------------------------------------------------------------
consensus_14469#1 CGGGTCCTCCTGTTGGCCTTTGGCTACGCCTATCCAGCATATGAGTGCTACAAGACTGTC 215
consensus_14469#0 TGAGAATGAAATTGACCGTAATTTGCTTGAGTTGAGAGCTCGAGCCACCGATGTAGTTGT 600
consensus_14469#2 ------------------------------------------------------------
consensus_14469#3 ------------------------------------------------------------
consensus_14469#1 GAACTGAATAAACCAGAGATTGAGCAGCTCATATTTTGGTGTCAGTATTGGATTCTAGTA 275
consensus_14469#0 CCTTTATTTTCAAAAGGCTGCTACTGTAGGACAGAATACATTCTTTGACGTTTTGAAGTA 660
consensus_14469#2 ------------------------------------------------------------
consensus_14469#3 ------------------------------------------------------------
consensus_14469#1 GCTCTGATGACGGTTATGGAGAGATTTGGAGATTTTACAATATCATGGCTACCATTTTAC 335
consensus_14469#0 TGTTGCTTCGCAATCACCATCTCAGAGGTCAAGTCAACAACCTTCTCAGGTACTAACATG 720
consensus_14469#2 ------------------------------------------------------------
consensus_14469#3 ------------------------------------------------------------
consensus_14469#1 TCGGAAGCAAAGCTGATGTTCTTTATATACTTGTGGTACCCTAAGACAAAGGGAACTACC 395
consensus_14469#0 CTTCTCTTCTTCAAAGCTGTTCACTGAACAAACTCATTTGCTTTTAACCACTGGAATTAC 780
consensus_14469#2 ------------------------------------------------------------
consensus_14469#3 ------------------------------------------------------------
consensus_14469#1 TACATTTATGGGACTTTCTTTAGGCCATATATTTCACAGCATGAGAATGAAATTGACCGT 455
consensus_14469#0 CGAATTCACCATTTCTGTGCAGTCGCTAATGCTCAAGTTTTCCGGTGCTCTTCTAAAGCA 840
consensus_14469#2 ------------------------------------------------------------
consensus_14469#3 ------------------------------------------------------------
consensus_14469#1 AATTTGCTTGAGTTGAGAGCTCGAGCCACCGATGTAGTTGTCCTTTATTTTCAAAAGGCT 515
consensus_14469#0 ATTCTATCCATGTTGTCTTGCTAGTTTGTTAGCTATATGTTTTTTTTTTATGCAAGACGC 900
consensus_14469#2 ------------------------------------------------------------
consensus_14469#3 ------------------------------------------------------------
consensus_14469#1 GCTACTGTAGGACAGAATACATTCTTTGGCGTTTTGAAGTATGTTGCTTCGCAATCACCA 575
consensus_14469#0 CTTTACTATTACTGCAGTACTGCCATCACATGTAGACTTGGTGTCTGCAGCTACTTTCTC 960
consensus_14469#2 ------------------------------------------------------------
consensus_14469#3 ------------------------------------------------------------
consensus_14469#1 TCTCAGAGGTCAAGTCAACAACCTTCTCAGGAGCCGCAACAACCAAAACAACAGCAGGCA 635
consensus_14469#0 TATAAACTATAGAAACAGGAATAATTTATAAGTCCATTTTACACAACCACCAAGGTCATA 1020
consensus_14469#2 --------AATTCGGCACGAGCAAAAACAAGCACCAACTGTTTTGCGCAGATCAGCATCT 52
consensus_14469#3 ------------------------------------------------------------
consensus_14469#1 CCAGTACAGCAGCAGCCGACACAAAAACAAGCACCAACTGTTTTGCGCAGATCAGCATCT 695
consensus_14469#0 GGCCTTTGTACTGAGCATCGGCATGAGGTGTGAGCATATAAGCTTTCTAGAAAAGCCACC 1080
consensus_14469#2 ATTGCTGCTCGGCAAGCTGCAATGGCACAGCAGTCTCAGGATGCCAAGACGGTTCCATCT 112
consensus_14469#3 ------------------------------------------------------------
consensus_14469#1 ATTGCTGCTCGGCAAGCTGCAATGGCACAGCAGTCTCAGGATGCCAAGACGGTTCCATCT 755
consensus_14469#0 ACTAATTTGCTG-AGTCTGCAAGCTATATGTTGGTTTATAGTACCATGTTAAAGTTTCTT 1139
consensus_14469#2 TCCCCCAAGATCAAGCGCCAAGCATCAACAAAAGCTGNCACCTGTGGNCATCAACAAAGT 172
consensus_14469#3 ------------------------------------------------------------
consensus_14469#1 TCCCCCAAGATCAAGCGCCAAGCATCAACAAAAGCTGC-ACCTGTGGC-ATCAACAAAGT 813
consensus_14469#0 TATGACTGATTTTAGATATGCACATCCTAGATTTTTTTTTATTTTTATTTTTGCAATTAC 1199
consensus_14469#2 TGAGCCGGAGNCTGCAGCTCNTNCAACACCAAAATCTGAT------GNCCGAACGCACCA 226
consensus_14469#3 ------------------------------------------------------------
consensus_14469#1 TGA--CCGGAGCTGCAGCTCCGTCAACACCAAAATCTGAT------GCC--GACGCACCA 863
consensus_14469#0 TAAGGGCCCGTTTGGTAGAGCTCCAACTCCTAAATTTAACTCTAGGAGTTGGGTCTGGAA 1259
consensus_14469#2 AAGAAAAATGAGGCGGCGCCAGCTTNCCTTGNCAAGTGNCCAACTGCCAGCAACAAAG-- 284
consensus_14469#3 ------------------------------------------------------------
consensus_14469#1 AAGAAAAATGAGGCGGCGCCAGCTTCCTT--GCAAGTGGCAACT--CCAGCAACAAAG-- 917
consensus_14469#0 TAGAGTTGTGGAGCAGTCTAAACCCGGCTCCACCTCTCTAGTTCATTTTGTGAGAGCGTT 1319
consensus_14469#2 --GNCCGATGTTACCAGCATTCT----------GGAACCTAGTGGCTCCACTTC----CC 328
consensus_14469#3 -----------------------------------------------------C----CC 3
consensus_14469#1 --GCC-GATGT-ACCAGCATCT------------GAACCTAGTG-CTCCACT-C----CC 955
consensus_14469#0 GCACCCAGCTCTACTCCCATTTTAGGTGGAGTTGAAACTGTTTGGCTGAGCTTCAGCTCC 1379
* **
consensus_14469#2 TGGAAGCCCGAAG---AAGCTGGACAAGATGGGCCATTGACGAGGCTGATGATGCCGTAG 385
consensus_14469#3 TGAAG--CCGAAG---AAGCTG-ACAAGATGG-CCATTGACGAGGCTGATGATNCCGTAG 56
consensus_14469#1 TGAAG--CCGAAG---AAGCTG-ACAAGATGG-CCATTGACGAGGCTGATGATGCCGTAG 1008
consensus_14469#0 AGGAGAGGTGGAGCTGGAGCTATGCCAAACATGCTCTTACACACATCCTAGTTAATGGTA 1439
* * * ** **** * * * * ** * * * *
consensus_14469#2 AGGGCACAGAAGAGGGTGATNCTGGTTTC--CAGGTGAGACATGGGG-GGGGGGGAAGAN 442
consensus_14469#3 AGGGCACAGAAGAGGGTGANTCTG--TTC--CAGGTGAGACA------GTAGAGGAGAGA 106
consensus_14469#1 AGGGCACAGAAGAGGGTGATCCTG--TTC--CAGGTGAGACA------GTAGAGGAGAGA 1058
consensus_14469#0 TGGTGACGTAAAAACTTCTTCCTGATTTCATCGAGCTATATATGTTCTAAAAAATATGTG 1499
** ** ** * * *** *** * * * * * *
consensus_14469#2 CCAATTGGGAAGGAGACGATT----CCGTGGTGGACTTCGGCGGCCNAAGGTTNAAGGGA 498
consensus_14469#3 CCAAT---GGAGGAGACGAT-----CCGTGT--GACT----CGCTCCAAGCT---AAGGA 149
consensus_14469#1 CCAAT---GGAGGAGACGAT-----CCGTGT--GACT----CGCTCCAAGCT---AAGGA 1101
consensus_14469#0 TGCATATCTGGGATTACAATATACACCTTCTTGGGAACATCCATATCTAATCCTTGGTAA 1559
** * ** ** ** * * * * *
consensus_14469#2 GGCG--------------TACTGNNTTCTTGNAGGATCCCTG----GCAGGGAAATTTTA 540
consensus_14469#3 GGCG--------------TACTGCTTCT---GAGGATCCT------GCAGGAAA---TTA 183
consensus_14469#1 GGCG--------------TACTGCTTCT---GAGGATCCT------GCAGGAAA---TTA 1135
consensus_14469#0 TGCAACAATGTCTCTTTCTACTGCTACATAAACACATGTCCAATTTGACCGGGAGTATTA 1619
** ***** ** * * * ***
consensus_14469#2 ACCAGGNATCCCATTCTTT-TTNGGTTGNCATGGTTGGGGCNGTCAATT-TTCCTTTTTA 598
consensus_14469#3 AC--AGCAATCCATTCTTT-TTG---TTGCATGTT--GTGCTGTTCATT-TTCTTTTT-- 232
consensus_14469#1 AC--AGCAATCCATTCTTT-TTG---TTGCATGTT--GTGCTGTTCATT-TTCTTTTT-- 1184
consensus_14469#0 ATATGACAATCCATTTGGCATTGTGTTGGCTTTGGAAATG-AGTCAATTACTACTTCCTC 1678
* * ***** ** * * * * ** *** * **
consensus_14469#2 AAGTTTTAGAATNGCCANGTTGTTTGGGGCATTTNGGGAATTGGTTGGCCAAATGNCCGN 658
consensus_14469#3 AAGTTTTAGA-TTGTCATGTTGTTTGGTGCNTGTGGGAAATGTGTTGGTNTAAAAAAAAA 291
consensus_14469#1 AAGTTTTAGA-TTGTCATGTTGTTTGGTGCATGTGGGAAATGTGTTGGTCTAATTGATCG 1243
consensus_14469#0 CTTTTCTTTTCATACTCTGTACATTGTAATTAGTTGAAAGTGTGATTGTTTAGTAACTGA 1738
** * ** *** * * * * * * * *
consensus_14469#2 CTGTT------------------------------------------------------- 663
consensus_14469#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------- 328
consensus_14469#1 TTCTGTTGCCCAAGAGTTTGTCATCTCGTTTTCTGTGTTGCTAGCATGTTTGTGTGCTTG 1303
consensus_14469#0 ATTTAACGCCACCTGAAAAGACAAAATCTTATTGGAATGAAATATGTGTTTAAGCATCAA 1798
consensus_14469#2 ------------------------------------------------------------
consensus_14469#3 ------------------------------------------------------------
consensus_14469#1 GAAGTTGTAAATAGCACCGTGCATGTATGTATATATCAATTGGTGGCATGGCGAGGAATG 1363
consensus_14469#0 AGTTTTACAGCCTAACAGGTCAGCAACTGCAAACTGGCGACTAGATTTTCGCAAGGTTTC 1858
consensus_14469#2 ------------------------------------------------------------
consensus_14469#3 ------------------------------------------------------------
consensus_14469#1 CCTGTATCTTGAAACATTAGACATTTCAATCAGGTCATTACATGAGCACTCTCTCTGTTG 1423
consensus_14469#0 TAAAGGGTTCGGTAGCATTATCTTTCAACACTAGTTGGGCTGTAC--------------- 1903
consensus_14469#2 ------------
consensus_14469#3 ------------
consensus_14469#1 TCTGTTAAAAAA 1435
consensus_14469#0 ------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||