|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14499#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 735 fasta sequence
[AGAGCACAACACTACAGGGACACCCAAAAACGGAAAAACCCAATCAGATCACTTCACCCACAGCACACGGCAAAATTTCTCCATCGATCGATCGATCCTTTGCAATTGCAAGAGCGGCAGGCATGTCGAGCACCAATACCACAAGCAACGACCCCAAGACGACCAAGGATGAATTAGCTCCGCCGGCACCGACGGCAGCGGAGCATGGAGGCGGCAAGGA-CGC-GGTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCACCAGA-TCCCCGCCGACCAGGCC-AAGGAC-GCGCCCAAGCAGGATTAATCCAGTCTGCATC-TAC-TGCAAC-TCTAC-TAGTACTAGTACCTTTGCACCTTGCAGTTGCAGTCGGTCTTGCAGATATGTTCATGGACACGCCGAGTTTGGTTTAGTTAGTTTTCTGCGAATGCGTGATA-CCCA-CCCACCTCTTGTTCTTGAAAATGTTTTGTATTACATCTGCTTAGCACTTAC-GTGCCGCAGCTAAGTGTCTGTATTGTTTGTTACATATCGATTAACTAATGTGGCCCCCAATAATAATATAATAATATACTGTCAAAAAATAATATAATATAATATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF313608 [AGAGCACAACACTACAGGGACACCCAAAAACGGAAAAACCCAATCAGATCACTTCACCCACGGCACACGGCAAAATTTCTCC ATCGATCGATCCTTTGCAATTGCAAGAGCGGCAGGCATGTCGAGCACCAATACCACAAGCAACGACCCCAAGACGACCAAGGATGAATTAGCTCCGCCGGCACCGACGGCAGCGGAGCATGGAGGCGGCAAGGA CGC GGTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCACCAGA TCCCCGCCGACCAGGCC AAGGAC GCGCCCAAGCAGGATTAATCCAGTCTGCATC TAC TGCAAC TCTAC TAGTACT ]
[+] EMBL CF315339 [ CAACACTACAGGGACACCCAAAAACGGAAAAACCCAATCAGATCACTTCACCCACAGCACACGGCAAAATTTCTCCATCGATCGATCGATCCTTTGCAATTGCAAGAGCGGCAGGCATGTCGAGCACCAATACCACAAGCAACGACCCCAAGACGACCAAGGATGAATTAGCTCCGCCGGCACCGACGGCAGCGGAGCATGGAGGCGGCAAGGA CGC GGTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCACCAGA TCCNCGCCGACCAGGCC AAGGAC GCGCCCAAGCAGGATTAATCCAGTCTGCATC TAC TGCAAC TCTAC TAGTACTAGTACCTTTGCACCTTGCAGTTGC ]
[+] EMBL AK063582 [ AACACTACAGGGACACCCAAAAACGGAAAAACCCAATCAGATCACTTCACCCACAGCACACGGCAAAATTTCTCCATCGATCGATCGATCCTTTGCAATTGCAAGAGCGGCAGGCATGTCGAGCACCAATACCACAAGCAACGACCCCAAGACGACCAAGGATGAATTAGCTCCGCCGGCACCGACGGCAGCGGAGCATGGAGGCGGCAAGGA CGC GGTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCACCAGA TCCCCGCCGACCAGGCC AAGGAC GCGCCCAAGCAGGATTAATCCAGTCTGCATC TAC TGCAAC TCTAC TAGTACTAGTACCTTTGCACCTTGCAGTTGCAGTCGGTCTTGCAGATATGTTCATGGACACGCCGAGTTTGGTTTAGTTAGTTTTCTGCGAATGCGTGATA CCCA CCCACCTCTTGTTCTTGAAAATGTTTTGTATTACATCTGCTTAGCACTTAC GTGCCGCAGCTAAGTGTCTGTATTGTTTGTTACATATCGATTAACTAATGTGGCCCCCA ]
[+] EMBL C29020 [ CACTACAGGGACACCCAAAAACGGAAAAACCCAATCAGATCACTTCACCCACAGCACACGGCAAAATTTCTCCATCGATCGATCGATCCTTTGCAATTGCAAGAGCGGCAGGCATGTCGAGCACCAATACCACAAGCAACGACCCCAAGACGACCAAGGATGAATTAGCTCCGCCGGCACCGACGGCAGCGGAGATTTGAGGCGGCAAGGA CGC GGTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCACCAGA TTCCCGCCGACCAGGCC AAGGAC GCGCCCAAGCAGGA ]
[+] EMBL AU066336 [ AGGGACACCCAAAAACGGAAAAACCCAATCAGATCACTTCACCCACAGCACACGGCAAAATTTCTCCATCGATCGATCGATCCTTTGCAATTGCAAGAGCGGCAGGCATGTCGAGCACCAATACCACAAGCANCGACCCCAAGACGACCAAGGATGAATTAGCTCCGCCGGCACCGACGGCAGCGGAG ATGGAGGCGGCAAGGA CGC GGTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCACCAGATTCCCCGCCGACCAGGNC AAGGAC GCGCCCANGCAGGTTTAATCCAGTCTGCATCTTNCTTGCAACTTTTACTTAGTtc ]
[+] EMBL AU066241 [ AGGGACACCCAAAAACGGAAAAACCCAATCAGATCACTTCACCCACAGCACACGGCAAAATTTCTCCATCGTTCGNTAGNTCCTTTNCAGTTGCAAGAGCGGCAGGCATGTCGAGCACCAATACCACAAGCAACGACCCCAAGACGACCAAGGATGANTTAGNTCCGCCGGCACCGACGGCAGCGGAGCATGGAGGCGGCAAGGACCGCGGGTGACGAGGACGGTTCAag ]
[+] EMBL CF313604 [ AGGGACACCCAAAAACGGAAAAACCCAATCAGATCACTTCACCCACGGCACACGGCAAAATTT ATCCATCGATCGATCCTTTGCAATTGCAAGAACGGCAGGCATGTCGAGCACCAATA ]
[+] EMBL AU166233 [ ACACCCAAAAACGGAAAAACCCAATCAGATCACTTCACCCACAGCACACGGCAAAATTTCTCCATCGATCGATCGATCCTTTGCAATTGCAAGAGCGGCAGGCATGTCGAGCACCAATACCACAAGCAACGACCCCAAGACGACCAAGGATGAATTAG TCCGCCGGCACCGACGGCAGCGGAGCATGGAGGCGGCAAGGA CGC GGTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCACCAGA TCCCCGCCGACCAGGCC AAGGAC GCGCCCAAGCAGGATTAATCCAGTCTGCATC TAC TGCAAC TCTAC TAGTACTAGTACCTTTGCACCTTGCAGTTGCAGTCGGTCTTGCAGATATGTTCATGGACACGCCGAGTTTGGTTTAGTTAGTTTTCTGCGAATGCGTGATA CCCA CCCACCTCTTGTTCTTGAAAATGTTTTGTATTACATCTGCTTA NACTTAC GTGCCGCAGCTAAGTGTCTGTATTGTTTGTTACATATCGATTAACTAATGTGGCCCCCNATAATAATATAATAATATACTGTCAAAAAATAATATAAAAAAAaaa ]
[+] EMBL C28247 [ ACACCCAAAAACGGAAAAACCCAATCAGATCACTTCACCCACAGCACACGGCAAAATTTCTCCATCGATCGATCGATCCTTTGCAATTGCAAGAGCGGCAGGNATGTCGAGCACCAATACCACAAGCAACGACCCCAAGACGACCAAGGATGAATTAGCTCCGTCGGCACCGACGGCAGCGGAG ATGGAGGCGGCAAGGA CGC GGTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTNGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCANGGTGGTGCAC ]
[+] EMBL AA752362 [ AAAAACGGAAAAACCCAATCAGATCACTTCACCCACAGCACACGGCAAAATTTCTCCATCGATCGATCGATCCTTTGCAATTGCAAGAGCGGCAGGCATGTCGAGCACCAATACCACAAGCAACGACCCCAAGACGACCAAGGATGAATTAGCTCCGCCGGCACCGACGGCAGCGGAGCATGGAGGCGGCAAGGA CGC GGTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCACCAGA TCC ]
[-] EMBL CF313609 [ GACGGCAGCGGAGCATGGAGGCGGCAAGGA CGC GGTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCACCAGA TCCCCGCCGACCAGGCC AAGGAC GCGCCCAAGCAGGATTAATCCAGTCTGCATC TAC TGCAAC TCTAC TAGTACTAGTACCTTTGCACCTTGCAGTTGCAGTCGGTCTTGCAGATATGTTCATGGACACGCCGAGTTTGGTTTAGTTAGTTTTCTGCGAATGCGTGATA CCCA CCCACCTCTTGTTCTTGAAAATGTTTTGTATTACATCTGCTTAGCACTTAC GTGCCGCAGCTAAGTGTCTGTATTGTTTGTTACATATCGATTAACTAATGTGGCCCCCAATAAAAAaa ]
[+] EMBL AU223318 [ CAAGGA CNC GGTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCACCAGA TCCCCGCCGACCAGGCC AAGGAC GCGCCCAAGCAGGATTAATCCAGTCTGCATC TAC TGCAAC TCTAC TAGTACTAGTACCTTTGCACCTTGCAGTTGCAGTCGGTCTTGCAGATATGTTCATGGACACGCCGAGTTTGGTTTAGTTAGTTTTCTGCGAATGCGTGATA CCCA CCCACCTCTTGTTCTTGAAAATGTTTTGTATTACATCTGCTTAGCACTTACGGTGCCGCAGCTAAGTGTCTGTATTGTTTGTTACATATCGATTAACTAATGTGGCCCCCAATAATAATATAATAATATACTGTCAAAAAATAATATAATATAATATACAAAAAA ]
[+] EMBL AU165265 [ C GNTGACGAAGACGGTNCAGACGGTGNAGGTGAAGGAGTCGGTNGGACAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCACCAGA TCCCCGCCGACCAGGCCAAAGGACGGCGCCCAAGCAGGATTAATCCAGTCTGCATC TAC TGCAAC TCTAC TAGTACTAGTACCTTTGCACCTTGCAGTTGCAGTCGGTCTTGCAGATATGTTCATGGACACGCCGAGTTTGGTTTAGTTAGTTTTCTGCGAATGCGTGATA CCCA CCCACCTCTTGTTCTTGAAAATGTTTTGTATTACATCTGCTTAGCACTTAC GTGCCGCAGCTAAGTGTCTGTATTGTTTGTTACATATCGATTAACTAATGTGGCCCCCAATAATAATATAATAAaaa ]
[+] EMBL AU223464 [ GTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCACCAGA TCCCCGCCGACCAGGCC AAGGAC GCGCCCAAGCAGGATTAATCCAGTCTGCATC TAC TGCAAC TCTAC TAGTACTAGTACCTTTGCACCTTGCAGTTGCAGTCGGTCTTGCAGATATGTTCATGGACACGCCGAGTTTGGTTTAGTTAGTTTTCTGCGAATGCGTGATACCCCACCCCACCTCTTGTTCTTGAAAATGTTTTGTATTACATCTGCTTAGCACTTAC GTGCCGCAGCTAAGTGTCTGTATTGTTTGTTACATATCGATTAACTAATGTGGCCCCCAATAATAATATAATAATATACTGTCAAAAAATAATATAATATAATATACAAAAAA ]
[+] EMBL CF315330 [ TGCTTAGCACTTAC GTGCCGCAGCTAAGTGTCTGTATTGTTTGTTACATATCGATTAACTAATGTGGCCCCCAATAATAATATAATAATATACTGTCAAAAAATAATATAATATAATATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14499#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence
[GTGTATGTATACTATATAATATCAAGGATGAATTAGCTCCGCCGGCACCGACGGCAGCGGAGATGGAGGCGGCAAGGACGCGGTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCACCAGATCCCCGCCGACCAGGCCAAGGACGCGCCCAAGCAGGATTAATCCAGTCGGTCTTGCA]
[+] EMBL AA750726 [GTGTATGTATACTATATAATATCAAGGATGAATTAGCTCCGCCGGCACCGACGGCAGCGGAGATGGAGGCGGCAAGGACGCGGTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCACCAGATCCCCGCCGACCAGGCCAAGGACGCGCCCAAGCAGGATTAATCCAGTCGGTCTTGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14499#0 AGAGCACAACACTACAGGGACACCCAAAAACGGAAAAACCCAATCAGATCACTTCACCCA 60
consensus_14499#1 ------------------------------------------------------------
consensus_14499#0 CAGCACACGGCAAAATTTCTCCATCGATCGATCGATCCTTTGCAATTGCAAGAGCGGCAG 120
consensus_14499#1 ------------------------------------------------------------
consensus_14499#0 GCATGTCGAGCACCAATACCACAAGCAACGACCCCAAGACGACCAAGGATGAATTAGCTC 180
consensus_14499#1 --------------------GTGTATGTATACTATATAAT-ATCAAGGATGAATTAGCTC 39
** * * * *****************
consensus_14499#0 CGCCGGCACCGACGGCAGCGGAGCATGGAGGCGGCAAGGACGCGGTGACGAAGACGGTGC 240
consensus_14499#1 CGCCGGCACCGACGGCAGCGGAG-ATGGAGGCGGCAAGGACGCGGTGACGAAGACGGTGC 98
*********************** ************************************
consensus_14499#0 AGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGG 300
consensus_14499#1 AGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGG 158
************************************************************
consensus_14499#0 TGCACCAGATCCCCGCCGACCAGGCCAAGGACGCGCCCAAGCAGGATTAATCCAGTCTGC 360
consensus_14499#1 TGCACCAGATCCCCGCCGACCAGGCCAAGGACGCGCCCAAGCAGGATTAATCCAGTCGGT 218
********************************************************* *
consensus_14499#0 ATCTACTGCAACTCTACTAGTACTAGTACCTTTGCACCTTGCAGTTGCAGTCGGTCTTGC 420
consensus_14499#1 CT----TGCA-------------------------------------------------- 224
* ****
consensus_14499#0 AGATATGTTCATGGACACGCCGAGTTTGGTTTAGTTAGTTTTCTGCGAATGCGTGATACC 480
consensus_14499#1 ------------------------------------------------------------
consensus_14499#0 CACCCACCTCTTGTTCTTGAAAATGTTTTGTATTACATCTGCTTAGCACTTACGTGCCGC 540
consensus_14499#1 ------------------------------------------------------------
consensus_14499#0 AGCTAAGTGTCTGTATTGTTTGTTACATATCGATTAACTAATGTGGCCCCCAATAATAAT 600
consensus_14499#1 ------------------------------------------------------------
consensus_14499#0 ATAATAATATACTGTCAAAAAATAATATAATATAATATACAAAAAAAAAAAAAAAAAAAA 660
consensus_14499#1 ------------------------------------------------------------
consensus_14499#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 720
consensus_14499#1 ------------------------------------------------------------
consensus_14499#0 AAAAAAAAAAAAAAA 735
consensus_14499#1 ---------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||