These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1450#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [AAACAAGAAAAGAAATTCTATCATCAACATGGGTCGTGTTCGTACAAAAACCGTTAAAAAAGCATCACGTCAAATCATCGAAAAATACTACACAAAATTGACGCTTGATTTTCATACGAACAAACGTGTCGTCGAAGAAATTGCTATTATTCCAACAAAACGTCTTCGAAATCAAATCGCTGGTTTCATTACACATTTAATGAAACGTATTCAAGCTGGACCCGTTCGTGGTATTTCAATTAAACTTCAAGAAGAAGAACGTGAACGACGTGACAATTACGTACCCGAAATATCTGCCCTTGAACCGCANACTATCATTGCTATCGATCAAGATACAAAGGATATGTTGAATGCGTTTGATTTCAAAACATTACCTAATGTTGATGTTCACACAGCTGATGATCAACGTAATCAACAACAAGGTGGTAATCACCGAGGTAGACCAGGTGGTTATACTCGTCGAAACAACGCTGAATAAACCATGTCCACATTCATAGATGAAGACCCGCATACACACACACCANATGAATTTTTTTTTCAATCCTGCCGAACCCAAATATAAACCTTGCTTTTTCTTCTAGATAC] [+] EMBL CA758949 [AAACAAGAAAAGAAATTCTATCATCAACATGGGTCGTGTTCGTACAAAAACCGTTAAAAAAGCATCACGTCAAATCATCGAAAAATACTACACAAAATTGACGCTTGATTTTCATACGAACAAACGTGTCGTCGAAGAAATTGCTATTATTCCAACAAAACGTCTTCGAAATCAAATCGCTGGTTTCATTACACATTTAATGAAACGTATTCAAGCTGGACCCGTTCGTGGTATTTCAATTAAACTTCAAGAAGAAGAACGTGAACGACGTGACAATTACGTACCCGAAATATCTGCCCTTGAACCGCANACTATCATTGCTATCGATCAAGATACAAAGGATATGTTGAATGCGTTTGATTTCAAAACATTACCTAATGTTGATGTTCACACAGCTGATGATCAACGTAATCAACAACAAGGTGGTAATCACCGAGGTAGACCAGGTGGTTATACTCGTCGAAACAACGCTGAATAAACCATGTCCACATTCATAGATGAAGACCCGCATACACACACACCANATGAATTTTTTTTTCAATCCTGCCGAACCCAAATATAAACCTTGCTTTTTCTTCTAGATAC] consensusID : consensus_1450#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [CATTCTCGTTCGATAATAAAAGCGAAACATGGGTCGTGTTCGTACGAAAACCGTTAAAAAAGCTTCGCGACAAATCATCGAAAAATACTACACGAAATTAACACTCGATTTTCATACAAATAAACGTGTCGTCGAAGAAATAGCTATTATTCCAACAAAACGTCTTCGAAATCAAATCGCCGGTTTTATTACACATTTAATGAAACGTATTCAAGCCGGACCGGTTCGAGGCATTT] [+] EMBL CA753801 [CATTCTCGTTCGATAATAAAAGCGAAACATGGGTCGTGTTCGTACGAAAACCGTTAAAAAAGCTTCGCGACAAATCATCGAAAAATACTACACGAAATTAACACTCGATTTTCATACAAATAAACGTGTCGTCGAAGAAATAGCTATTATTCCAACAAAACGTCTTCGAAATCAAATCGCCGGTTTTATTACACATTTAATGAAACGTATTCAAGCCGGACCGGTTCGAGGCATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1450#0 -AAACAAGAAAAGAAATTCTATCATCAACATGGGTCGTGTTCGTACAAAAACCGTTAAAA 59 consensus_1450#1 CATTCTCGTTCGATAATAAAAGCGA-AACATGGGTCGTGTTCGTACGAAAACCGTTAAAA 59 * * * *** * * ******************** ************* consensus_1450#0 AAGCATCACGTCAAATCATCGAAAAATACTACACAAAATTGACGCTTGATTTTCATACGA 119 consensus_1450#1 AAGCTTCGCGACAAATCATCGAAAAATACTACACGAAATTAACACTCGATTTTCATACAA 119 **** ** ** *********************** ***** ** ** *********** * consensus_1450#0 ACAAACGTGTCGTCGAAGAAATTGCTATTATTCCAACAAAACGTCTTCGAAATCAAATCG 179 consensus_1450#1 ATAAACGTGTCGTCGAAGAAATAGCTATTATTCCAACAAAACGTCTTCGAAATCAAATCG 179 * ******************** ************************************* consensus_1450#0 CTGGTTTCATTACACATTTAATGAAACGTATTCAAGCTGGACCCGTTCGTGGTATTTCAA 239 consensus_1450#1 CCGGTTTTATTACACATTTAATGAAACGTATTCAAGCCGGACCGGTTCGAGGCATTT--- 236 * ***** ***************************** ***** ***** ** **** consensus_1450#0 TTAAACTTCAAGAAGAAGAACGTGAACGACGTGACAATTACGTACCCGAAATATCTGCCC 299 consensus_1450#1 ------------------------------------------------------------ consensus_1450#0 TTGAACCGCANACTATCATTGCTATCGATCAAGATACAAAGGATATGTTGAATGCGTTTG 359 consensus_1450#1 ------------------------------------------------------------ consensus_1450#0 ATTTCAAAACATTACCTAATGTTGATGTTCACACAGCTGATGATCAACGTAATCAACAAC 419 consensus_1450#1 ------------------------------------------------------------ consensus_1450#0 AAGGTGGTAATCACCGAGGTAGACCAGGTGGTTATACTCGTCGAAACAACGCTGAATAAA 479 consensus_1450#1 ------------------------------------------------------------ consensus_1450#0 CCATGTCCACATTCATAGATGAAGACCCGCATACACACACACCANATGAATTTTTTTTTC 539 consensus_1450#1 ------------------------------------------------------------ consensus_1450#0 AATCCTGCCGAACCCAAATATAAACCTTGCTTTTTCTTCTAGATAC 585 consensus_1450#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||