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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14519#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1088 fasta sequence
[GTTTACTTGGTGACGAATCAATCGAAACCCAATTTATCAAATCCATCGCGAATCCCCAACCCAACCGAATCCACCCAAGAAGAAGAAGAAGAAGAAGAAGGGTTATTGCATCGATCGCAGCGAGGGGGAAAGGGGTAATCGCGGAGCAGATCGAAACCCGAATCCAATCGATCGAGCCGCCATGAGCTTCATCTTCGGCAAGCGGAAGACCCCAGCCGAGTTGCTGCGGGAGAACAAGCGGATGCTGG-ATAAATCCATCAGGGAGATCGAGAGGGAGAGGCAGGGCCTGCAGGCTCAGGAGAAGAAGCTCATCGCCGAGATCAAGAAGGTGGCCAAGCAAGGACAGATGGGAGCCGTAAAAATTATGGCAAAGGACCTTATCCGCACAAGACATCAGATCACAAAATTCTATGCCCTCAAGTCCCAGC-TACAGGGTGTATCTCTT-CGAATTCAGACATTG-AAATCGACACAAG-CTATGGG-TGAGGCCA-TGAA-GGGTGTCACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACCAGCTCTGCAGAAGATAATGC-GGGAG-TTTGAGATACAAAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATGCCATTGACGATGCTTTGGAGGGCGATGAGGAGGAGGAAGAAACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGAGCTTGTCGGGGCTCCTTCAACCGCTGTTGCTG-CACCGGTTGGAGCAGGAAAGGTTGCCGCTCAAGCTGAAGCCGCTGGAGGTGGGGACGGTGGGATAGATGACGACCTACAGGCCCGGCTTGATAATCTGAGGAAGATGTGAGCATATAGGGCTTGGAAGAAATAACTATACGGTGTCATTGTACAATCAGCATATAGACATTTTATGCCATCATTTTTCTTAGATTGTTGGGCACATAACTGCAGGCTTCGATTTTCTAGCCCCCTTGTATATATAGAAGCTCTTATTATCCTAGAAGAAGGTCATATTATCACCTAACAAGCTAACAGCCCTCG-GTTGCTTTTGTTCTGAATAATTTTCCTGAAAAAAAGGA]
[+] EMBL AK073930 [GTTTACTTGGTGACGAATCAATCGAAACCCAATTTATCAAATCCATCGCGAATCCCCAACCCAACCGAATCCACCCAAGAAGAAGAAGAAGAAGAAGAAGGGTTATTGCATCGATCGCAGCGAGGGGGAAAGGGGTAATCGCGGAGCAGATCGAAACCCGAATCCAATCGATCGAGCCGCCATGAGCTTCATCTTCGGCAAGCGGAAGACCCCAGCCGAGTTGCTGCGGGAGAACAAGCGGATGCTGG ATAAATCCATCAGGGAGATCGAGAGGGAGAGGCAGGGCCTGCAGGCTCAGGAGAAGAAGCTCATCGCCGAGATCAAGAAGGTGGCCAAGCAAGGACAGATGGGAGCCGTAAAAATTATGGCAAAGGACCTTATCCGCACAAGACATCAGATCACAAAATTCTATGCCCTCAAGTCCCAGC TACAGGGTGTATCTCTT CGAATTCAGACATTG AAATCGACACAAG CTATGGG TGAGGCCA TGAA GGGTGTCACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACCAGCTCTGCAGAAGATAATGC GGGAG TTTGAGATACAAAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATGCCATTGACGATGCTTTGGAGGGCGATGAGGAGGAGGAAGAAACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGAGCTTGTCGGGGCTCCTTCAACCGCTGTTGCTG CACCGGTTGGAGCAGGAAAGGTTGCCGCTCAAGCTGAAGCCGCTGGAGGTGGGGACGGTGGGATAGATGACGACCTACAGGCCCGGCTTGATAATCTGAGGAAGATGTGAGCATATAGGGCTTGGAAGAAATAACTATACGGTGTCATTGTACAATCAGCATATAGACATTTTATGCCATCATTTTTCTTAGATTGTTGGGCACATAACTGCAGGCTTCGATTTTCTAGCCCCCTTGTATATATAGAAGCT ]
[+] EMBL AK061167 [ AAACCCAATTTATCAAATCCATCGCGAATCCCCAACCCAACCGAATCCACCCAAGAAGAAGAAGAAGAAGAAGAAGGGTTATTGCATCGATCGCAGCGAGGGGGAAAGGGGTAATCGCGGAGCAGATCGAAACCCGAATCCAATCGATCGAGCCGCCATGAGCTTCATCTTCGGCAAGCGGAAGACCCCAGCCGAGTTGCTGCGGGAGAACAAGCGGATGCTGG ATAAATCCATCAGGGAGATCGAGAGGGAGAGGCAGGGCCTGCAGGCTCAGGAGAAGAAGCTCATCGCCGAGATCAAGAAGGTGGCCAAGCAAGGACAGATGGGAGCCGTAAAAATTATGGCAAAGGACCTTATCCGCACAAGACATCAGATCACAAAATTCTATGCCCTCAAGTCCCAGC TACAGGGTGTATCTCTT CGAATTCAGACATTG AAATCGACACAAG CTATGGG TGAGGCCA TGAA GGGTGTCACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACCAGCTCTGCAGAAGATAATGC GGGAG TTTGAGATACAAAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATGCCATTGACGATGCTTTGGAGGGCGATGAGGAGGAGGAAGAAACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGAGCTTGTCGGGGCTCCTTCAACCGCTGTTGCTG CACCGGTTGGAGCAGGAAAGGTTGCCGCTCAAGTTGAAGCCGCTGGAGGTGGGGACGGTGGGATAGATGACGACCTACAGGCCCGGCTTGATAATCTGAGGAAGATGTGAGCATATAGGGCTTGGAAGAAATAACTATACGGTGTCATTGTACAATCAGCATATAGACATTTTATGCCATCATTTTTCTTAGATTGTTGGGCACATAACTGCAGGCTTCGATTTTCTAGC ]
[+] EMBL CA754152 [ AATCCATCGCGAATCCCCAACCCAACCGAATCCACCCAAGAAGAAGAAGAAGAAGAAGAAGGGTTATTGCATCGATCGCAGCGAGGGGGAAAGGGGTAATCGCGGAGCAGATCGAAACCCGAATCCAATCGATCGAGCCGCCATGAGCTTCATCTTCGGCAAGCGGAAGACCCCAGCCGAGTTGCTGCGGGAGAACAAGCGGATGCTGG ATAAATCCATCANGGAGATCGAGAGGGAGAGGCAGGGCCTGCAGGCTCAGGAGAAGAAGCTCATCGCCGAGATCAAGAAGGTGGCCAAGCAAGGACAGATGGGAGCCGTAAAAATTATGGCAAAGGACCTTATCCGCACAAGACATCAGATCACAAAATTCTATGCCCTCAAGTCCCAGC TACAGGGTGTATCTCTT CGAATTCAGACATTG AAATCGACACAAG CTATGGG TGAGGCCA TGAA GGGTGTCACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACCAGCTCTGCAGAAGATAATGCGGGGAG TTTGAGATACAAAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATGCCCTTGACCATGCTTTGGAGGGCGAT ]
[+] EMBL CF278217 [ TCCATCGCGAATCCCCAACCCAACCGAATCCACCCAAGAAGAAGAAGAAGAAGAAGAAGGGTTATTGCATCGATCGCAGCGAGGGGGAAAGGGGTAATCGCGGAGCAGATCGAAACCCGAATCCAATCGATCGAGCCGCCATGAGCTTCATCTTCGGCAAGCGGAAGACCCCAGCCGAGTTGCTGCGGGAGAACAAGCGGATGCTGG ATAAATCCATCAGGGAGATCGAGAGGGAGAGGCAGGGCCTGCAGGCTCAGGAGAAGAAGCTCATCGCCGAGATCAAGAAGGTGGCCAAGCAAGGACAGATGGGAGCCGTAAAAATTATGGCAAAGGACCTTATCCGCACAAGACATCAGATCACAAAATTCTATGCCCTCAAGTCCCAGCTTACAGGGTGTATCTCTT CGAATTCAGACATTG AAATCGACACAAGCCTATGGG TGAGGCCA TGAAGGGGTGTCACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACCAGCTCTGCAGAAGATAATGC GGGAGTTTTGAGGTACAAAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATGCCATTGA ]
[+] EMBL CF279153 [ TCCATCGCGAATCCCCAACCCAACCGAATCCACCCAAGAAGAAGAAGAAGAAGAAGAAGGGTTATTGCATCGATCGCAGCGAGGGGGAAAGGGGTAATCGCGGAGCAGATCGAAACCCGAATCCAATCGATCGAGCCGCCATGAGCTTCATCTTCGGCAAGCGGAAGACCCCAGCCGAGTTGCTGCGGGAGAACAAGCGGATGCTGG ATAAATCCATCAGGGAGATCGAGAGGGAGAGGCAGGGCCTGCAGGCTCAGGAGAAGAAGCTCATCGCCGAGATCAAGAAGGTGGCCAAGCAAGGACAGATGGGAGCCGTAAAAATTATGGCAAAGGACCTTATCCGCACAAGACATCAGATCACAAAATTCTATGCCCTCAAGTCCCAGC TACAGGGTGTATCTCTT CGAATTCAGACATTG AAATCGACACAAG CTATGGG TGAGGCCA TGAA GGGTGTCACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACCAGCTCTGCAGAAGAT ATGC GGGAG TTTGAGGTACAAAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATGCC ]
[+] EMBL C27959 [ TTATTGCATCGATCGCAGCGAGGGGGAAAGGGGTAATCGCGGA CAGATCGAAACCCGAATCCAATCGATCGAGCCGCCATGAGCTTCATCTTCGGCAAGCGGAAGACCCCAGCCGAGTTGCTGCGGGAGAACAAGCGGAT CTGGNATAAATCCATCAGGGAGATCGAGAGGGAGAGGCAGGG CTGCAGNCTCAGGAGAAGAAGCTCATCGCCGAGATCAAGAAGGTGGCCAAGCAAGGACAGATGGGAGCCGTAAAAATTATGGCAAAGGACCTTATCCGCACAAGACATCAGATCACANAATTCTATGCCCTCAAGTCCCAGC TACAGGGTGTATCTCTTCCGAATTCAGACATTGAAAATCGACACAAG CTATGGGTTAAGGCCATTNAA GGGTGTCACAAAAagc ]
[+] EMBL CB666565 [ ATCGCAGCGAGGGGGAAAGGGGTAATCGCGGAGCAGATCGAAACCCGAATCCAATCGATCGAGCCGCCATGAGCTTCATCTTCGGCAAGCGGAAGACCCCAGCCGAGTTGCTGCGGGAGAACAAGCGGATGCTGG ATAAATCCATCAGGGAGATCGAGAGGGAGAGGCAGGGCCTGCAGGCTCAGGAGAAGAAGCTCATCGCCGAGATCAAGAAGGTGGCCAAGCAAGGACAGATGGGAGCCGTAAAAATTATGGCAAAGGACCTTATCCGCACAAGACATCAGATCACAAAATTCTATGCCCTCAAGTCCCAGC TACAGGGTGTATCTCTT CGAATTCAGACATTG AAATCGACACAAG CTATGGG TGAGGCCA TGAA GGGTGTCACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACCAGCTCTGCAGAAGATAATGC GGGAG TTTGAGATACAAAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATGCCATTGACGATGCTTTGGAGGGCGATGAGGAGGAGGAAGAAACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGAGCTTGTCGGGGCTCCTTCAACCGCTGTTGCTG CACCGGTTGGAGCAGGAAAGGTTGCCGCTCAAGCTGAAGCCGCTGGAGGTGGGGACGGTGGGATAGATGACGACCTACAGGCCCGGCTTGATAATCTGAGGAAGATGTGAGCATATAGGGCTTGGAAGAAATAACTATACGGTGTCATTGTACAATCAGCATATAGACATTTTATGCCATCATTTTTCTTAGATTGTTGGGCACATAACTGCAGGCTT ]
[+] EMBL CB666613 [ ATCGCAGCGAGGGGGAAAGGGGTAATCGCGGAGCAGATCGAAACCCGAATCCAATCGATCGAGCCGCCATGAGCTTCATCTTCGGCAAGCGGAAGACCCCAGCCGAGTTGCTGCGGGAGAACAAGCGGATGCTGG ATAAATCCATCAGGGAGATCGAGAGGGAGAGGCAGGGCCTGCAGGCTCAGGAGAAGAAGCTCATCGCCGAGATCAAGAAGGTGGCCAAGCAAGGACAGATGGGAGCCGTAAAAATTATGGCAAAGGACCTTATCCGCACAAGACATCAGATCACAAAATTCTATGCCCTCAAGTCCCAGC TACAGGGTGTATCTCTT CGAATTCAGACATTG AAATCGACACAAG CTATGGG TGAGGCCA TGAA GGGTGTCACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACCAGCTCTGCAGAAGATAATGC GGGAG TTTGAGATACAAAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATGCCATTGACGATGCTTTGGAGGGCGATGAGGAGGAGGAAGAAACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGAGCTTGTCGGGGCTCCTTCAACCGCTGTTGCTG CACCGGTTGGAGCAGGAAAGGTTGCCGCTCAAGCTGAAGCCGCTGGAGGTGGGGACGGTGGGATAGATGACGACCTACAGGCCCGGCTTGATAATCTGAGGAAGATGTGAGCATATAGGGCTTGGAAGAAATAACTATACGGTGTCATTGTACAATCAGCATATAGACATTTTATG ]
[-] EMBL CB666566 [ CAGGGAGATCGAGAGGGAGAGGCAGGGCCTGCAGGCTCAGGAGAAGAAGCTCATCGCCGAGATCAAGAAGGTGGCCAAGCAAGGACAGATGGGAGCCGTAAAAATTATGGCAAAGGACCTTATCCGCACAAGACATCAGATCACAAAATTCTATGCCCTCAAGTCCCAGC TACAGGGTGTATCTCTT CGAATTCAGACATTG AAATCGACACAAG CTATGGG TGAGGCCA TGAA GGGTGTCACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACCAGCTCTGCAGAAGATAATGC GGGAG TTTGAGATACAAAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATGCCATTGACGATGCTTTGGAGGGCGATGAGGAGGAGGAAGAAACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGAGCTTGTCGGGGCTCCTTCAACCGCTGTTGCTG CACCGGTTGGAGCAGGAAAGGTTGCCGCTCAAGCTGAAGCCGCTGGAGGTGGGGACGGTGGGATAGATGACGACCTACAGGCCCGGCTTGATAATCTGAGGAAGATGTGAGCATATAGGGCTTGGAAGAAATAACTATACGGTGTCATTGTACAATCAGCATATAGACATTTTATGCCATCATTTTTCTTAGATTGTTGGGCACATAACTGCAGGCTTCGATTTTCTAGCCCCCTTGTATATATAGAAGCTCTTATTATCCTAGAAGAAGGTCATATTATCACCTAACAAGCTAAAAGGCCTCG GTTGCTTTTGTTCTGAATAATTTTCC ]
[+] EMBL AU063032 [ CTGCAGGCTCAGGAGAAGAAGCTCATCGCCGAGATCAAGAAGGTGGCCAAGCAAGGACAGATGGGAGCCGTAAAAATTATGGCAAAGGACCTTATCCGCACAAGACATCAGATCACAAAATTCTATGCCCTCAAGTCCCAGC TACAGGGTGTATCTCTT CGAATTCAGACATTG AAATCGACACAAG CTATGGG TGAGGCCA TGAA GGGTGTCACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACCAGCTCTGCAGAAGATAATGC GGGAG TTTGAGATACAAAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATGCCATTGACGATGCTTTGGAAGGCGATGANGAGGAGGAAGAACCAGAAGAACTGGTAAACCAGGTCCTTGACG AATTGGCATCGACGTCAACTCAGAGCTTGTCNGGGCTCCTTC ACCG NGTTGCTG CACCGGTTTGAGCAGGAAAG ]
[-] EMBL CB666614 [ GGAGAAGAAGCTCATCGCCGAGATCAAGAAGGTGGCCAAGCAAGGACAGATGGGAGCCGTAAAAATTATGGCAAAGGACCTTATCCGCACAAGACATCAGATCACAAAATTCTATGCCCTCAAGTCCCAGC TACAGGGTGTATCTCTT CGAATTCAGACATTG AAATCGACACAAG CTATGGG TGAGGCCA TGAA GGGTGTCACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACCAGCTCTGCAGAAGATAATGC GGGAG TTTGAGATACAAAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATGCCATTGACGATGCTTTGGAGGGCGATGAGGAGGAGGAAGAAACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGAGCTTGTCGGGGCTCCTTCAACCGCTGTTGCTG CACCGGTTGGAGCAGGAAAGGTTGCCGCTCAAGCTGAAGCCGCTGGAGGTGGGGACGGTGGGATAGATGACGACCTACAGGCCCGGCTTGATAATCTGAGGAAGATGTGAGCATATAGGGCTTGGAAGAAATAACTATACGGTGTCATTGTACAATCAGCATATAGACATTTTATGCCATCATTTTTCTTAGATTGTTGGGCACATAACTGCAGGCTTCGATTTTCTAGCCCCCTTGTATATATAGAAGCTCTTATTATCCTAGAAGAAGGTCATATTATCACCTAACAAGCTAACAGCCCTCG GTTGCTTTTGTTCTGAATAATTTTCCTGAAAAAAAGGA]
[-] EMBL CF279154 [ G AAATCGACACAAG CTATGGG TGAGGCCA TGAA GGGTGTCACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACCAGCTCTGCAGAAGATAATGC GGGAG TTTGAGGTACAAAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATGCCATTGACGATGCTTTGGAGGGCGATGAGGAGGAGGAAGAAACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGAGCTTGTCGGGGCTCCTTCAACCGCTGTTGCTG CACCGGTTGGAGCAGGAAAGGTTGCCGCTCAAGTTGAAGCCGCTGGAGGTGGGGACGGTGGGATAGATGACGACCTACAGGCCCGGCTTGATAATCTGAGGAAGATGTGAGCATATAGGGCTT GAANGAATAACTATACGGTGTCATTGTACAATCAGCATATAGACATTTAAAACCATCATTTTTCTTAGATTGTTGGGCACATAACTGCAGGCTTCGATTTTCTAGCCCCCTTGTATATATAGAAGCTCTTATTATCCTAGAAGAAGGTCATATTATCACCTAACAAGCTAACAGCCCTCGAGAAGTTTTTGTTCTGAATAAaaaa ]
[+] EMBL BM419077 [ aaGGTGTCACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACCAGCTCTGCAGAAGATAATGC GGGAG TTTGAGATAC AAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATGCCATTGACGATGCTTTGGAGGGCGATGAGGAGGAGGAAGAAACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGAGCTTGTCGGGGCTCCTTCAACCGCTGTTGCTG CACCGGTTGGAGCAGGAAAGGTTGCCGCTCAAGCTGAAGCCGCTGGAGGTGGGGACGGTGGGATAGATGACGACCTACAGGCCCGGCTTGATAATCTGAGGAAGATGTGAGCATATAGGGCTTGGAAGAAATAACTATACGGTGTCATTGTACAATCAGCATATAGACATTTTATGCCATCATTTTTCTTAGATTGTTGGGCACATAACTGCAGGCTTCGATTTTCTAGCCCCCTTGTATATATAGAAGCTCTTATTATCCTAGAAGAAGGTCATATTATCACCTAAAAAaaaa ]
[+] EMBL AU222502 [ GGAGATAGTCAGTAGCACAATGAATGATGCCATTGACGATGCTTTGGAGGGCGATGAGGAGGAGGAAGAAACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGAGCTTGTCGGGGCTCCTTCAACCGCTGTTGCTG CACCGGTTGGAGCAGGAAAGGTTGCCGCTCAAGCTGAAGCCGCTGGAGGTGGGGACGGTGGGATAGATGACGACCTACAGGCCCGGCTTGATAATCTGAGGAAGATGTGAGCATATAGGGCTTGGAAGAAATAACTATACGGTGTCATTGTACAATCAGCATATAGACATTTTATGCCATCATTTTTCTTAGATTGTTGGGCACATAACTGCAGGCTTCGATTTTCTAGCCCCCTTGTATATATAGAAGCTCTTATTATCCTAAAAaa ]
[+] EMBL AU092778 [ TGGTAAACCAGGTCCTTGNCGAAATTGGCATNGACGTCAACTCAGAGCTTGTCGGGGCNCCTTCAACCGCTGTTGCTGTCACCGGTTGGAGCAGGAAAGGTTGCCGCTCAAGNTGAAGCCGCTGGAGGTGGGGACGGTGGGATAGATGACGACCTACAGGCCCGGCTTGATAATCTGAGGAAGATGTGAGCATATAGGGCTTGGAAGAAATAACTATACGGTGTCATTGTACAATCAGCATATAGACATTTTATGCCATCATTTTTCTTAGATTGTTGGGCACATAACTGCAGGCTTCGATTTTCTAGCCCCNTTGTATATATAGAAGCTCTTATTATCCTAAAAAAAaaaaaaaaa ]
consensusID : consensus_14519#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence
[CAGAAGATAATGCGGGGAGTTTGGAGGATACCAAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATNCCACTTGACGATGCTTTGGAGGGCGATGAGGATGGAGGAAGATAACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGAGCTTGTCGGGGCTCCTTCAACCGCTGTTGCTGCACCGGTTGGAGCCAGGAAAGGTTGCCGCTCAAGCTGAAGCCCGCCTGGAGGTGGGGACGGTGGGTATAGTATGACGACCTACAGGCCCGGCTTGATGAATGCTGAGGGAAGATGTGAGCATNATAAGGGGCTTGGGAAGAAATGAACTGATGACGGTGTGCATTGGTACAATGCAGCATGATGAGACATTGTGTGATGGCCATGCATGTTGTGTGCTTAGATTTTTGGGGCACATAACTGGCAGGGCTTGCGATTTTGCTGGANCCCCCTGTGGTGATATATAGAAGCTCTTATTATCCTAGAAGAAGGTCATATTATCCACCCAAA]
[+] EMBL BQ909023 [CAGAAGATAATGCGGGGAGTTTGGAGGATACCAAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATNCCACTTGACGATGCTTTGGAGGGCGATGAGGATGGAGGAAGATAACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGAGCTTGTCGGGGCTCCTTCAACCGCTGTTGCTGCACCGGTTGGAGCCAGGAAAGGTTGCCGCTCAAGCTGAAGCCCGCCTGGAGGTGGGGACGGTGGGTATAGTATGACGACCTACAGGCCCGGCTTGATGAATGCTGAGGGAAGATGTGAGCATNATAAGGGGCTTGGGAAGAAATGAACTGATGACGGTGTGCATTGGTACAATGCAGCATGATGAGACATTGTGTGATGGCCATGCATGTTGTGTGCTTAGATTTTTGGGGCACATAACTGGCAGGGCTTGCGATTTTGCTGGANCCCCCTGTGGTGATATATAGAAGCTCTTATTATCCTAGAAGAAGGTCATATTATCCACCCAAA]
consensusID : consensus_14519#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 98 fasta sequence
[TTTCTAGCCCCCTTGTATATATAGAGAGCTCTTATTATCCTAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAA]
[+] EMBL CF318349 [TTTCTAGCCCCCTTGTATATATAGAGAGCTCTTATTATCCTAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14519#0 GTTTACTTGGTGACGAATCAATCGAAACCCAATTTATCAAATCCATCGCGAATCCCCAAC 60
consensus_14519#1 ------------------------------------------------------------
consensus_14519#2 ------------------------------------------------------------
consensus_14519#0 CCAACCGAATCCACCCAAGAAGAAGAAGAAGAAGAAGAAGGGTTATTGCATCGATCGCAG 120
consensus_14519#1 ------------------------------------------------------------
consensus_14519#2 ------------------------------------------------------------
consensus_14519#0 CGAGGGGGAAAGGGGTAATCGCGGAGCAGATCGAAACCCGAATCCAATCGATCGAGCCGC 180
consensus_14519#1 ------------------------------------------------------------
consensus_14519#2 ------------------------------------------------------------
consensus_14519#0 CATGAGCTTCATCTTCGGCAAGCGGAAGACCCCAGCCGAGTTGCTGCGGGAGAACAAGCG 240
consensus_14519#1 ------------------------------------------------------------
consensus_14519#2 ------------------------------------------------------------
consensus_14519#0 GATGCTGGATAAATCCATCAGGGAGATCGAGAGGGAGAGGCAGGGCCTGCAGGCTCAGGA 300
consensus_14519#1 ------------------------------------------------------------
consensus_14519#2 ------------------------------------------------------------
consensus_14519#0 GAAGAAGCTCATCGCCGAGATCAAGAAGGTGGCCAAGCAAGGACAGATGGGAGCCGTAAA 360
consensus_14519#1 ------------------------------------------------------------
consensus_14519#2 ------------------------------------------------------------
consensus_14519#0 AATTATGGCAAAGGACCTTATCCGCACAAGACATCAGATCACAAAATTCTATGCCCTCAA 420
consensus_14519#1 ------------------------------------------------------------
consensus_14519#2 ------------------------------------------------------------
consensus_14519#0 GTCCCAGCTACAGGGTGTATCTCTTCGAATTCAGACATTGAAATCGACACAAGCTATGGG 480
consensus_14519#1 ------------------------------------------------------------
consensus_14519#2 ------------------------------------------------------------
consensus_14519#0 TGAGGCCATGAAGGGTGTCACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACC 540
consensus_14519#1 ------------------------------------------------------------
consensus_14519#2 ------------------------------------------------------------
consensus_14519#0 AGCTCTGCAGAAGATAATGCGGG-AGTTTGA--GATACAAAACGAGAAGATGGAGATAGT 597
consensus_14519#1 -------CAGAAGATAATGCGGGGAGTTTGGAGGATACCAAACGAGAAGATGGAGATAGT 53
consensus_14519#2 --------------------------------------------------------TTTC 4
*
consensus_14519#0 CAGTAGCACAATGAATGATGCCA-TTGACGATGCTTTGGAGGGCGATGAGGA-GGAGGAA 655
consensus_14519#1 CAGTAGCACAATGAATGATNCCACTTGACGATGCTTTGGAGGGCGATGAGGATGGAGGAA 113
consensus_14519#2 TAGCCCCCTTGTATATATAGAGAGCTCTTATTATCCTAAACAAAAAAAAAAAAAAAAAAA 64
** * * ** * * * * * * * * * **
consensus_14519#0 GA-AACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGA 714
consensus_14519#1 GATAACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGA 173
consensus_14519#2 AAAAAAAAAAAAAAAAAAAAAATAAA----AAAAAAAA---------------------- 98
* ** * ** ** *** * * ***
consensus_14519#0 GCTTGTCGGGGCTCCTTCAACCGCTGTTGCTGCACCGGTTGGAGC-AGGAAAGGTTGCCG 773
consensus_14519#1 GCTTGTCGGGGCTCCTTCAACCGCTGTTGCTGCACCGGTTGGAGCCAGGAAAGGTTGCCG 233
consensus_14519#2 ------------------------------------------------------------
consensus_14519#0 CTCAAGCTGAAGCCG--CTGGAGGTGGGGACGGTGGG-ATAG-ATGACGACCTACAGGCC 829
consensus_14519#1 CTCAAGCTGAAGCCCGCCTGGAGGTGGGGACGGTGGGTATAGTATGACGACCTACAGGCC 293
consensus_14519#2 ------------------------------------------------------------
consensus_14519#0 CGGCTTGATAAT--CTGAGG-AAGATGTGAGCATAT---AGGGCTTGG-AAGAAAT-AAC 881
consensus_14519#1 CGGCTTGATGAATGCTGAGGGAAGATGTGAGCATNATAAGGGGCTTGGGAAGAAATGAAC 353
consensus_14519#2 ------------------------------------------------------------
consensus_14519#0 TAT--ACGGTGT-CATTG-TACAAT-CAGCATAT--AGACATTTTATG----CCAT-CAT 929
consensus_14519#1 TGATGACGGTGTGCATTGGTACAATGCAGCATGATGAGACATTGTGTGATGGCCATGCAT 413
consensus_14519#2 ------------------------------------------------------------
consensus_14519#0 TTTT----CTTAGATTGTTGGG-CACATAACTG-CAGGCTT--CGATTTT-CTAG-CCCC 979
consensus_14519#1 GTTGTGTGCTTAGATTTTTGGGGCACATAACTGGCAGGGCTTGCGATTTTGCTGGANCCC 473
consensus_14519#2 ------------------------------------------------------------
consensus_14519#0 CTTGT----ATATATAGAAGCTCTTATTATCCTAGAAGAAGGTCATATTATC-ACCTAAC 1034
consensus_14519#1 CCTGTGGTGATATATAGAAGCTCTTATTATCCTAGAAGAAGGTCATATTATCCACCCAAA 533
consensus_14519#2 ------------------------------------------------------------
consensus_14519#0 AAGCTAACAGCCCTCGGTTGCTTTTGTTCTGAATAATTTTCCTGAAAAAAAGGA 1088
consensus_14519#1 ------------------------------------------------------
consensus_14519#2 ------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||