These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14519#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1088 fasta sequence [GTTTACTTGGTGACGAATCAATCGAAACCCAATTTATCAAATCCATCGCGAATCCCCAACCCAACCGAATCCACCCAAGAAGAAGAAGAAGAAGAAGAAGGGTTATTGCATCGATCGCAGCGAGGGGGAAAGGGGTAATCGCGGAGCAGATCGAAACCCGAATCCAATCGATCGAGCCGCCATGAGCTTCATCTTCGGCAAGCGGAAGACCCCAGCCGAGTTGCTGCGGGAGAACAAGCGGATGCTGG-ATAAATCCATCAGGGAGATCGAGAGGGAGAGGCAGGGCCTGCAGGCTCAGGAGAAGAAGCTCATCGCCGAGATCAAGAAGGTGGCCAAGCAAGGACAGATGGGAGCCGTAAAAATTATGGCAAAGGACCTTATCCGCACAAGACATCAGATCACAAAATTCTATGCCCTCAAGTCCCAGC-TACAGGGTGTATCTCTT-CGAATTCAGACATTG-AAATCGACACAAG-CTATGGG-TGAGGCCA-TGAA-GGGTGTCACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACCAGCTCTGCAGAAGATAATGC-GGGAG-TTTGAGATACAAAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATGCCATTGACGATGCTTTGGAGGGCGATGAGGAGGAGGAAGAAACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGAGCTTGTCGGGGCTCCTTCAACCGCTGTTGCTG-CACCGGTTGGAGCAGGAAAGGTTGCCGCTCAAGCTGAAGCCGCTGGAGGTGGGGACGGTGGGATAGATGACGACCTACAGGCCCGGCTTGATAATCTGAGGAAGATGTGAGCATATAGGGCTTGGAAGAAATAACTATACGGTGTCATTGTACAATCAGCATATAGACATTTTATGCCATCATTTTTCTTAGATTGTTGGGCACATAACTGCAGGCTTCGATTTTCTAGCCCCCTTGTATATATAGAAGCTCTTATTATCCTAGAAGAAGGTCATATTATCACCTAACAAGCTAACAGCCCTCG-GTTGCTTTTGTTCTGAATAATTTTCCTGAAAAAAAGGA] [+] EMBL AK073930 [GTTTACTTGGTGACGAATCAATCGAAACCCAATTTATCAAATCCATCGCGAATCCCCAACCCAACCGAATCCACCCAAGAAGAAGAAGAAGAAGAAGAAGGGTTATTGCATCGATCGCAGCGAGGGGGAAAGGGGTAATCGCGGAGCAGATCGAAACCCGAATCCAATCGATCGAGCCGCCATGAGCTTCATCTTCGGCAAGCGGAAGACCCCAGCCGAGTTGCTGCGGGAGAACAAGCGGATGCTGG ATAAATCCATCAGGGAGATCGAGAGGGAGAGGCAGGGCCTGCAGGCTCAGGAGAAGAAGCTCATCGCCGAGATCAAGAAGGTGGCCAAGCAAGGACAGATGGGAGCCGTAAAAATTATGGCAAAGGACCTTATCCGCACAAGACATCAGATCACAAAATTCTATGCCCTCAAGTCCCAGC TACAGGGTGTATCTCTT CGAATTCAGACATTG AAATCGACACAAG CTATGGG TGAGGCCA TGAA GGGTGTCACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACCAGCTCTGCAGAAGATAATGC GGGAG TTTGAGATACAAAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATGCCATTGACGATGCTTTGGAGGGCGATGAGGAGGAGGAAGAAACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGAGCTTGTCGGGGCTCCTTCAACCGCTGTTGCTG CACCGGTTGGAGCAGGAAAGGTTGCCGCTCAAGCTGAAGCCGCTGGAGGTGGGGACGGTGGGATAGATGACGACCTACAGGCCCGGCTTGATAATCTGAGGAAGATGTGAGCATATAGGGCTTGGAAGAAATAACTATACGGTGTCATTGTACAATCAGCATATAGACATTTTATGCCATCATTTTTCTTAGATTGTTGGGCACATAACTGCAGGCTTCGATTTTCTAGCCCCCTTGTATATATAGAAGCT ] [+] EMBL AK061167 [ AAACCCAATTTATCAAATCCATCGCGAATCCCCAACCCAACCGAATCCACCCAAGAAGAAGAAGAAGAAGAAGAAGGGTTATTGCATCGATCGCAGCGAGGGGGAAAGGGGTAATCGCGGAGCAGATCGAAACCCGAATCCAATCGATCGAGCCGCCATGAGCTTCATCTTCGGCAAGCGGAAGACCCCAGCCGAGTTGCTGCGGGAGAACAAGCGGATGCTGG ATAAATCCATCAGGGAGATCGAGAGGGAGAGGCAGGGCCTGCAGGCTCAGGAGAAGAAGCTCATCGCCGAGATCAAGAAGGTGGCCAAGCAAGGACAGATGGGAGCCGTAAAAATTATGGCAAAGGACCTTATCCGCACAAGACATCAGATCACAAAATTCTATGCCCTCAAGTCCCAGC TACAGGGTGTATCTCTT CGAATTCAGACATTG AAATCGACACAAG CTATGGG TGAGGCCA TGAA GGGTGTCACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACCAGCTCTGCAGAAGATAATGC GGGAG TTTGAGATACAAAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATGCCATTGACGATGCTTTGGAGGGCGATGAGGAGGAGGAAGAAACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGAGCTTGTCGGGGCTCCTTCAACCGCTGTTGCTG CACCGGTTGGAGCAGGAAAGGTTGCCGCTCAAGTTGAAGCCGCTGGAGGTGGGGACGGTGGGATAGATGACGACCTACAGGCCCGGCTTGATAATCTGAGGAAGATGTGAGCATATAGGGCTTGGAAGAAATAACTATACGGTGTCATTGTACAATCAGCATATAGACATTTTATGCCATCATTTTTCTTAGATTGTTGGGCACATAACTGCAGGCTTCGATTTTCTAGC ] [+] EMBL CA754152 [ AATCCATCGCGAATCCCCAACCCAACCGAATCCACCCAAGAAGAAGAAGAAGAAGAAGAAGGGTTATTGCATCGATCGCAGCGAGGGGGAAAGGGGTAATCGCGGAGCAGATCGAAACCCGAATCCAATCGATCGAGCCGCCATGAGCTTCATCTTCGGCAAGCGGAAGACCCCAGCCGAGTTGCTGCGGGAGAACAAGCGGATGCTGG ATAAATCCATCANGGAGATCGAGAGGGAGAGGCAGGGCCTGCAGGCTCAGGAGAAGAAGCTCATCGCCGAGATCAAGAAGGTGGCCAAGCAAGGACAGATGGGAGCCGTAAAAATTATGGCAAAGGACCTTATCCGCACAAGACATCAGATCACAAAATTCTATGCCCTCAAGTCCCAGC TACAGGGTGTATCTCTT CGAATTCAGACATTG AAATCGACACAAG CTATGGG TGAGGCCA TGAA GGGTGTCACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACCAGCTCTGCAGAAGATAATGCGGGGAG TTTGAGATACAAAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATGCCCTTGACCATGCTTTGGAGGGCGAT ] [+] EMBL CF278217 [ TCCATCGCGAATCCCCAACCCAACCGAATCCACCCAAGAAGAAGAAGAAGAAGAAGAAGGGTTATTGCATCGATCGCAGCGAGGGGGAAAGGGGTAATCGCGGAGCAGATCGAAACCCGAATCCAATCGATCGAGCCGCCATGAGCTTCATCTTCGGCAAGCGGAAGACCCCAGCCGAGTTGCTGCGGGAGAACAAGCGGATGCTGG ATAAATCCATCAGGGAGATCGAGAGGGAGAGGCAGGGCCTGCAGGCTCAGGAGAAGAAGCTCATCGCCGAGATCAAGAAGGTGGCCAAGCAAGGACAGATGGGAGCCGTAAAAATTATGGCAAAGGACCTTATCCGCACAAGACATCAGATCACAAAATTCTATGCCCTCAAGTCCCAGCTTACAGGGTGTATCTCTT CGAATTCAGACATTG AAATCGACACAAGCCTATGGG TGAGGCCA TGAAGGGGTGTCACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACCAGCTCTGCAGAAGATAATGC GGGAGTTTTGAGGTACAAAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATGCCATTGA ] [+] EMBL CF279153 [ TCCATCGCGAATCCCCAACCCAACCGAATCCACCCAAGAAGAAGAAGAAGAAGAAGAAGGGTTATTGCATCGATCGCAGCGAGGGGGAAAGGGGTAATCGCGGAGCAGATCGAAACCCGAATCCAATCGATCGAGCCGCCATGAGCTTCATCTTCGGCAAGCGGAAGACCCCAGCCGAGTTGCTGCGGGAGAACAAGCGGATGCTGG ATAAATCCATCAGGGAGATCGAGAGGGAGAGGCAGGGCCTGCAGGCTCAGGAGAAGAAGCTCATCGCCGAGATCAAGAAGGTGGCCAAGCAAGGACAGATGGGAGCCGTAAAAATTATGGCAAAGGACCTTATCCGCACAAGACATCAGATCACAAAATTCTATGCCCTCAAGTCCCAGC TACAGGGTGTATCTCTT CGAATTCAGACATTG AAATCGACACAAG CTATGGG TGAGGCCA TGAA GGGTGTCACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACCAGCTCTGCAGAAGAT ATGC GGGAG TTTGAGGTACAAAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATGCC ] [+] EMBL C27959 [ TTATTGCATCGATCGCAGCGAGGGGGAAAGGGGTAATCGCGGA CAGATCGAAACCCGAATCCAATCGATCGAGCCGCCATGAGCTTCATCTTCGGCAAGCGGAAGACCCCAGCCGAGTTGCTGCGGGAGAACAAGCGGAT CTGGNATAAATCCATCAGGGAGATCGAGAGGGAGAGGCAGGG CTGCAGNCTCAGGAGAAGAAGCTCATCGCCGAGATCAAGAAGGTGGCCAAGCAAGGACAGATGGGAGCCGTAAAAATTATGGCAAAGGACCTTATCCGCACAAGACATCAGATCACANAATTCTATGCCCTCAAGTCCCAGC TACAGGGTGTATCTCTTCCGAATTCAGACATTGAAAATCGACACAAG CTATGGGTTAAGGCCATTNAA GGGTGTCACAAAAagc ] [+] EMBL CB666565 [ ATCGCAGCGAGGGGGAAAGGGGTAATCGCGGAGCAGATCGAAACCCGAATCCAATCGATCGAGCCGCCATGAGCTTCATCTTCGGCAAGCGGAAGACCCCAGCCGAGTTGCTGCGGGAGAACAAGCGGATGCTGG ATAAATCCATCAGGGAGATCGAGAGGGAGAGGCAGGGCCTGCAGGCTCAGGAGAAGAAGCTCATCGCCGAGATCAAGAAGGTGGCCAAGCAAGGACAGATGGGAGCCGTAAAAATTATGGCAAAGGACCTTATCCGCACAAGACATCAGATCACAAAATTCTATGCCCTCAAGTCCCAGC TACAGGGTGTATCTCTT CGAATTCAGACATTG AAATCGACACAAG CTATGGG TGAGGCCA TGAA GGGTGTCACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACCAGCTCTGCAGAAGATAATGC GGGAG TTTGAGATACAAAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATGCCATTGACGATGCTTTGGAGGGCGATGAGGAGGAGGAAGAAACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGAGCTTGTCGGGGCTCCTTCAACCGCTGTTGCTG CACCGGTTGGAGCAGGAAAGGTTGCCGCTCAAGCTGAAGCCGCTGGAGGTGGGGACGGTGGGATAGATGACGACCTACAGGCCCGGCTTGATAATCTGAGGAAGATGTGAGCATATAGGGCTTGGAAGAAATAACTATACGGTGTCATTGTACAATCAGCATATAGACATTTTATGCCATCATTTTTCTTAGATTGTTGGGCACATAACTGCAGGCTT ] [+] EMBL CB666613 [ ATCGCAGCGAGGGGGAAAGGGGTAATCGCGGAGCAGATCGAAACCCGAATCCAATCGATCGAGCCGCCATGAGCTTCATCTTCGGCAAGCGGAAGACCCCAGCCGAGTTGCTGCGGGAGAACAAGCGGATGCTGG ATAAATCCATCAGGGAGATCGAGAGGGAGAGGCAGGGCCTGCAGGCTCAGGAGAAGAAGCTCATCGCCGAGATCAAGAAGGTGGCCAAGCAAGGACAGATGGGAGCCGTAAAAATTATGGCAAAGGACCTTATCCGCACAAGACATCAGATCACAAAATTCTATGCCCTCAAGTCCCAGC TACAGGGTGTATCTCTT CGAATTCAGACATTG AAATCGACACAAG CTATGGG TGAGGCCA TGAA GGGTGTCACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACCAGCTCTGCAGAAGATAATGC GGGAG TTTGAGATACAAAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATGCCATTGACGATGCTTTGGAGGGCGATGAGGAGGAGGAAGAAACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGAGCTTGTCGGGGCTCCTTCAACCGCTGTTGCTG CACCGGTTGGAGCAGGAAAGGTTGCCGCTCAAGCTGAAGCCGCTGGAGGTGGGGACGGTGGGATAGATGACGACCTACAGGCCCGGCTTGATAATCTGAGGAAGATGTGAGCATATAGGGCTTGGAAGAAATAACTATACGGTGTCATTGTACAATCAGCATATAGACATTTTATG ] [-] EMBL CB666566 [ CAGGGAGATCGAGAGGGAGAGGCAGGGCCTGCAGGCTCAGGAGAAGAAGCTCATCGCCGAGATCAAGAAGGTGGCCAAGCAAGGACAGATGGGAGCCGTAAAAATTATGGCAAAGGACCTTATCCGCACAAGACATCAGATCACAAAATTCTATGCCCTCAAGTCCCAGC TACAGGGTGTATCTCTT CGAATTCAGACATTG AAATCGACACAAG CTATGGG TGAGGCCA TGAA GGGTGTCACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACCAGCTCTGCAGAAGATAATGC GGGAG TTTGAGATACAAAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATGCCATTGACGATGCTTTGGAGGGCGATGAGGAGGAGGAAGAAACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGAGCTTGTCGGGGCTCCTTCAACCGCTGTTGCTG CACCGGTTGGAGCAGGAAAGGTTGCCGCTCAAGCTGAAGCCGCTGGAGGTGGGGACGGTGGGATAGATGACGACCTACAGGCCCGGCTTGATAATCTGAGGAAGATGTGAGCATATAGGGCTTGGAAGAAATAACTATACGGTGTCATTGTACAATCAGCATATAGACATTTTATGCCATCATTTTTCTTAGATTGTTGGGCACATAACTGCAGGCTTCGATTTTCTAGCCCCCTTGTATATATAGAAGCTCTTATTATCCTAGAAGAAGGTCATATTATCACCTAACAAGCTAAAAGGCCTCG GTTGCTTTTGTTCTGAATAATTTTCC ] [+] EMBL AU063032 [ CTGCAGGCTCAGGAGAAGAAGCTCATCGCCGAGATCAAGAAGGTGGCCAAGCAAGGACAGATGGGAGCCGTAAAAATTATGGCAAAGGACCTTATCCGCACAAGACATCAGATCACAAAATTCTATGCCCTCAAGTCCCAGC TACAGGGTGTATCTCTT CGAATTCAGACATTG AAATCGACACAAG CTATGGG TGAGGCCA TGAA GGGTGTCACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACCAGCTCTGCAGAAGATAATGC GGGAG TTTGAGATACAAAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATGCCATTGACGATGCTTTGGAAGGCGATGANGAGGAGGAAGAACCAGAAGAACTGGTAAACCAGGTCCTTGACG AATTGGCATCGACGTCAACTCAGAGCTTGTCNGGGCTCCTTC ACCG NGTTGCTG CACCGGTTTGAGCAGGAAAG ] [-] EMBL CB666614 [ GGAGAAGAAGCTCATCGCCGAGATCAAGAAGGTGGCCAAGCAAGGACAGATGGGAGCCGTAAAAATTATGGCAAAGGACCTTATCCGCACAAGACATCAGATCACAAAATTCTATGCCCTCAAGTCCCAGC TACAGGGTGTATCTCTT CGAATTCAGACATTG AAATCGACACAAG CTATGGG TGAGGCCA TGAA GGGTGTCACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACCAGCTCTGCAGAAGATAATGC GGGAG TTTGAGATACAAAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATGCCATTGACGATGCTTTGGAGGGCGATGAGGAGGAGGAAGAAACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGAGCTTGTCGGGGCTCCTTCAACCGCTGTTGCTG CACCGGTTGGAGCAGGAAAGGTTGCCGCTCAAGCTGAAGCCGCTGGAGGTGGGGACGGTGGGATAGATGACGACCTACAGGCCCGGCTTGATAATCTGAGGAAGATGTGAGCATATAGGGCTTGGAAGAAATAACTATACGGTGTCATTGTACAATCAGCATATAGACATTTTATGCCATCATTTTTCTTAGATTGTTGGGCACATAACTGCAGGCTTCGATTTTCTAGCCCCCTTGTATATATAGAAGCTCTTATTATCCTAGAAGAAGGTCATATTATCACCTAACAAGCTAACAGCCCTCG GTTGCTTTTGTTCTGAATAATTTTCCTGAAAAAAAGGA] [-] EMBL CF279154 [ G AAATCGACACAAG CTATGGG TGAGGCCA TGAA GGGTGTCACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACCAGCTCTGCAGAAGATAATGC GGGAG TTTGAGGTACAAAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATGCCATTGACGATGCTTTGGAGGGCGATGAGGAGGAGGAAGAAACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGAGCTTGTCGGGGCTCCTTCAACCGCTGTTGCTG CACCGGTTGGAGCAGGAAAGGTTGCCGCTCAAGTTGAAGCCGCTGGAGGTGGGGACGGTGGGATAGATGACGACCTACAGGCCCGGCTTGATAATCTGAGGAAGATGTGAGCATATAGGGCTT GAANGAATAACTATACGGTGTCATTGTACAATCAGCATATAGACATTTAAAACCATCATTTTTCTTAGATTGTTGGGCACATAACTGCAGGCTTCGATTTTCTAGCCCCCTTGTATATATAGAAGCTCTTATTATCCTAGAAGAAGGTCATATTATCACCTAACAAGCTAACAGCCCTCGAGAAGTTTTTGTTCTGAATAAaaaa ] [+] EMBL BM419077 [ aaGGTGTCACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACCAGCTCTGCAGAAGATAATGC GGGAG TTTGAGATAC AAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATGCCATTGACGATGCTTTGGAGGGCGATGAGGAGGAGGAAGAAACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGAGCTTGTCGGGGCTCCTTCAACCGCTGTTGCTG CACCGGTTGGAGCAGGAAAGGTTGCCGCTCAAGCTGAAGCCGCTGGAGGTGGGGACGGTGGGATAGATGACGACCTACAGGCCCGGCTTGATAATCTGAGGAAGATGTGAGCATATAGGGCTTGGAAGAAATAACTATACGGTGTCATTGTACAATCAGCATATAGACATTTTATGCCATCATTTTTCTTAGATTGTTGGGCACATAACTGCAGGCTTCGATTTTCTAGCCCCCTTGTATATATAGAAGCTCTTATTATCCTAGAAGAAGGTCATATTATCACCTAAAAAaaaa ] [+] EMBL AU222502 [ GGAGATAGTCAGTAGCACAATGAATGATGCCATTGACGATGCTTTGGAGGGCGATGAGGAGGAGGAAGAAACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGAGCTTGTCGGGGCTCCTTCAACCGCTGTTGCTG CACCGGTTGGAGCAGGAAAGGTTGCCGCTCAAGCTGAAGCCGCTGGAGGTGGGGACGGTGGGATAGATGACGACCTACAGGCCCGGCTTGATAATCTGAGGAAGATGTGAGCATATAGGGCTTGGAAGAAATAACTATACGGTGTCATTGTACAATCAGCATATAGACATTTTATGCCATCATTTTTCTTAGATTGTTGGGCACATAACTGCAGGCTTCGATTTTCTAGCCCCCTTGTATATATAGAAGCTCTTATTATCCTAAAAaa ] [+] EMBL AU092778 [ TGGTAAACCAGGTCCTTGNCGAAATTGGCATNGACGTCAACTCAGAGCTTGTCGGGGCNCCTTCAACCGCTGTTGCTGTCACCGGTTGGAGCAGGAAAGGTTGCCGCTCAAGNTGAAGCCGCTGGAGGTGGGGACGGTGGGATAGATGACGACCTACAGGCCCGGCTTGATAATCTGAGGAAGATGTGAGCATATAGGGCTTGGAAGAAATAACTATACGGTGTCATTGTACAATCAGCATATAGACATTTTATGCCATCATTTTTCTTAGATTGTTGGGCACATAACTGCAGGCTTCGATTTTCTAGCCCCNTTGTATATATAGAAGCTCTTATTATCCTAAAAAAAaaaaaaaaa ] consensusID : consensus_14519#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence [CAGAAGATAATGCGGGGAGTTTGGAGGATACCAAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATNCCACTTGACGATGCTTTGGAGGGCGATGAGGATGGAGGAAGATAACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGAGCTTGTCGGGGCTCCTTCAACCGCTGTTGCTGCACCGGTTGGAGCCAGGAAAGGTTGCCGCTCAAGCTGAAGCCCGCCTGGAGGTGGGGACGGTGGGTATAGTATGACGACCTACAGGCCCGGCTTGATGAATGCTGAGGGAAGATGTGAGCATNATAAGGGGCTTGGGAAGAAATGAACTGATGACGGTGTGCATTGGTACAATGCAGCATGATGAGACATTGTGTGATGGCCATGCATGTTGTGTGCTTAGATTTTTGGGGCACATAACTGGCAGGGCTTGCGATTTTGCTGGANCCCCCTGTGGTGATATATAGAAGCTCTTATTATCCTAGAAGAAGGTCATATTATCCACCCAAA] [+] EMBL BQ909023 [CAGAAGATAATGCGGGGAGTTTGGAGGATACCAAACGAGAAGATGGAGATAGTCAGTAGCACAATGAATGATNCCACTTGACGATGCTTTGGAGGGCGATGAGGATGGAGGAAGATAACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGAGCTTGTCGGGGCTCCTTCAACCGCTGTTGCTGCACCGGTTGGAGCCAGGAAAGGTTGCCGCTCAAGCTGAAGCCCGCCTGGAGGTGGGGACGGTGGGTATAGTATGACGACCTACAGGCCCGGCTTGATGAATGCTGAGGGAAGATGTGAGCATNATAAGGGGCTTGGGAAGAAATGAACTGATGACGGTGTGCATTGGTACAATGCAGCATGATGAGACATTGTGTGATGGCCATGCATGTTGTGTGCTTAGATTTTTGGGGCACATAACTGGCAGGGCTTGCGATTTTGCTGGANCCCCCTGTGGTGATATATAGAAGCTCTTATTATCCTAGAAGAAGGTCATATTATCCACCCAAA] consensusID : consensus_14519#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 98 fasta sequence [TTTCTAGCCCCCTTGTATATATAGAGAGCTCTTATTATCCTAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAA] [+] EMBL CF318349 [TTTCTAGCCCCCTTGTATATATAGAGAGCTCTTATTATCCTAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14519#0 GTTTACTTGGTGACGAATCAATCGAAACCCAATTTATCAAATCCATCGCGAATCCCCAAC 60 consensus_14519#1 ------------------------------------------------------------ consensus_14519#2 ------------------------------------------------------------ consensus_14519#0 CCAACCGAATCCACCCAAGAAGAAGAAGAAGAAGAAGAAGGGTTATTGCATCGATCGCAG 120 consensus_14519#1 ------------------------------------------------------------ consensus_14519#2 ------------------------------------------------------------ consensus_14519#0 CGAGGGGGAAAGGGGTAATCGCGGAGCAGATCGAAACCCGAATCCAATCGATCGAGCCGC 180 consensus_14519#1 ------------------------------------------------------------ consensus_14519#2 ------------------------------------------------------------ consensus_14519#0 CATGAGCTTCATCTTCGGCAAGCGGAAGACCCCAGCCGAGTTGCTGCGGGAGAACAAGCG 240 consensus_14519#1 ------------------------------------------------------------ consensus_14519#2 ------------------------------------------------------------ consensus_14519#0 GATGCTGGATAAATCCATCAGGGAGATCGAGAGGGAGAGGCAGGGCCTGCAGGCTCAGGA 300 consensus_14519#1 ------------------------------------------------------------ consensus_14519#2 ------------------------------------------------------------ consensus_14519#0 GAAGAAGCTCATCGCCGAGATCAAGAAGGTGGCCAAGCAAGGACAGATGGGAGCCGTAAA 360 consensus_14519#1 ------------------------------------------------------------ consensus_14519#2 ------------------------------------------------------------ consensus_14519#0 AATTATGGCAAAGGACCTTATCCGCACAAGACATCAGATCACAAAATTCTATGCCCTCAA 420 consensus_14519#1 ------------------------------------------------------------ consensus_14519#2 ------------------------------------------------------------ consensus_14519#0 GTCCCAGCTACAGGGTGTATCTCTTCGAATTCAGACATTGAAATCGACACAAGCTATGGG 480 consensus_14519#1 ------------------------------------------------------------ consensus_14519#2 ------------------------------------------------------------ consensus_14519#0 TGAGGCCATGAAGGGTGTCACAAAAGCCATGAGACAGATGAACAGGCAGATGAATCTACC 540 consensus_14519#1 ------------------------------------------------------------ consensus_14519#2 ------------------------------------------------------------ consensus_14519#0 AGCTCTGCAGAAGATAATGCGGG-AGTTTGA--GATACAAAACGAGAAGATGGAGATAGT 597 consensus_14519#1 -------CAGAAGATAATGCGGGGAGTTTGGAGGATACCAAACGAGAAGATGGAGATAGT 53 consensus_14519#2 --------------------------------------------------------TTTC 4 * consensus_14519#0 CAGTAGCACAATGAATGATGCCA-TTGACGATGCTTTGGAGGGCGATGAGGA-GGAGGAA 655 consensus_14519#1 CAGTAGCACAATGAATGATNCCACTTGACGATGCTTTGGAGGGCGATGAGGATGGAGGAA 113 consensus_14519#2 TAGCCCCCTTGTATATATAGAGAGCTCTTATTATCCTAAACAAAAAAAAAAAAAAAAAAA 64 ** * * ** * * * * * * * * * ** consensus_14519#0 GA-AACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGA 714 consensus_14519#1 GATAACAGAAGAACTGGTAAACCAGGTCCTTGACGAAATTGGCATCGACGTCAACTCAGA 173 consensus_14519#2 AAAAAAAAAAAAAAAAAAAAAATAAA----AAAAAAAA---------------------- 98 * ** * ** ** *** * * *** consensus_14519#0 GCTTGTCGGGGCTCCTTCAACCGCTGTTGCTGCACCGGTTGGAGC-AGGAAAGGTTGCCG 773 consensus_14519#1 GCTTGTCGGGGCTCCTTCAACCGCTGTTGCTGCACCGGTTGGAGCCAGGAAAGGTTGCCG 233 consensus_14519#2 ------------------------------------------------------------ consensus_14519#0 CTCAAGCTGAAGCCG--CTGGAGGTGGGGACGGTGGG-ATAG-ATGACGACCTACAGGCC 829 consensus_14519#1 CTCAAGCTGAAGCCCGCCTGGAGGTGGGGACGGTGGGTATAGTATGACGACCTACAGGCC 293 consensus_14519#2 ------------------------------------------------------------ consensus_14519#0 CGGCTTGATAAT--CTGAGG-AAGATGTGAGCATAT---AGGGCTTGG-AAGAAAT-AAC 881 consensus_14519#1 CGGCTTGATGAATGCTGAGGGAAGATGTGAGCATNATAAGGGGCTTGGGAAGAAATGAAC 353 consensus_14519#2 ------------------------------------------------------------ consensus_14519#0 TAT--ACGGTGT-CATTG-TACAAT-CAGCATAT--AGACATTTTATG----CCAT-CAT 929 consensus_14519#1 TGATGACGGTGTGCATTGGTACAATGCAGCATGATGAGACATTGTGTGATGGCCATGCAT 413 consensus_14519#2 ------------------------------------------------------------ consensus_14519#0 TTTT----CTTAGATTGTTGGG-CACATAACTG-CAGGCTT--CGATTTT-CTAG-CCCC 979 consensus_14519#1 GTTGTGTGCTTAGATTTTTGGGGCACATAACTGGCAGGGCTTGCGATTTTGCTGGANCCC 473 consensus_14519#2 ------------------------------------------------------------ consensus_14519#0 CTTGT----ATATATAGAAGCTCTTATTATCCTAGAAGAAGGTCATATTATC-ACCTAAC 1034 consensus_14519#1 CCTGTGGTGATATATAGAAGCTCTTATTATCCTAGAAGAAGGTCATATTATCCACCCAAA 533 consensus_14519#2 ------------------------------------------------------------ consensus_14519#0 AAGCTAACAGCCCTCGGTTGCTTTTGTTCTGAATAATTTTCCTGAAAAAAAGGA 1088 consensus_14519#1 ------------------------------------------------------ consensus_14519#2 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||