These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14527#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 2523 fasta sequence [GAGACGAGTGAGAGGAGGAGAGCGGCCATGGCGGGGCGGAGTGGCGGCGGCGGCGGCGGGAGCTCCGGGAAGAGCGGGACGGGGAGGATGGTGTCGCTGCAGGAG-TTCGTCTCGTCCATGGCGCCTCTCATAGACCTGGAGAAGGCGGCGGAGATATCGGCGGAGTCGGCGACGAGCTCGAAGACCCTCGAGAGGAGGGGTTGCGTCATGGCCAACCTCAAGTGCACCGACGCCCAGACGGGGCTGATGGGGAAGACGCTCCTGGAGTTCCAACCCAACAAGGGCGACGTGCTTCCACCTCACAAGTTTGGAACACACGATGTGG-TTGCTCTGAAGCCAAATAAGGCAGATGCTGGATCTGCTGCTCTTGGGCAAGGTGTAGTTTATCG-CTTGAAGGATTC-TTCCATTACT-GTTGCCTTT-GATGACATTCCTGAAGATGGATTAAATAGCCCTCTCCGCC-TTGAAAAGCTTGC-AAAT-GA-GGTGACATACCGCAGGATGAAGGATGCACT-AGTTCAACTTAGTAA-GGGCATTCAAACAGGGCCTTCAGCAAACCTTATTCCTGTTTTGTTTGGAGAAAACCCACCTATGAGTTCCAAGGATGTTGCGAAGTTCAGTCCATTTAACAAGAATTTGGATGAGTCACAGAAAGATGCTATCTCGAAGGCCCTCAGGTCAAGGGATGTTTTCTTGCTTCATGGACCTCCTGGCACTGGGAAGACAACAACTATCATTGAGATAATATTGCAGGAGGTGAAACGTGGATCAAAGATTCTTGCTTGTGCTGCTTCTAACATCGCCGTGGATAACATTGTTGAGCGACTCTCCCGATATAGAACCAAATTGGTGAGGTTAGGCCATCCTGCTCGATTACTACCCCAAGTGTTGGACAGTGCTCTTGACGCACAGGTATTGCGAGCAGATAACAGCAGCTTAGCAGGAGATATTCGCAAAGAAATGAAGGTGCTTAATAGCAAATTGCTGAAAGCTAAGGATAAGAATACAAAAAGGGACATCAGGAAAGAGCTCAGAACCCTTGCCAAAGAAGAGAGAAAACGACAACAGCTTGCTGTTGCTGATGTGATAAAAAATGCAGATGTTGTACTGTCGACTTTGACTGGTGCATCTTCCAAAAAGCTAGATGGTATTACATTTGATTTGGTCATTATTGATGAAGCTGCTCAGGCACTTGAGATGGCATGTTGGATAGCCTTATTGAAGGGTCCAAGATGTGTGCTTGCTGGAGACCATCTTCAACTTCCTCCGACTATCCAAAGTGCTGAGGCTGAGAAGAAGGGGATGGGAAAGACACTCTTTGAACGCCTTACTGAAGCTTATGGAGATCAAATTACATCCATGCTCACTATCCAGTACAGAATGCATGAGCTCATAATGAATTGGTCATCTAAAGAACTTTATAATAACAAGATCAAAGCTCATTCTAGTGTTGCTGAT-CATATGCTCTATGACATTG-AAGAAGTGAAAAGA-TCTTCTTCCACAGAGCCGAC-TATCATACTAATTGACACTACTGGGTGTGACATGGAAGAAGTAAAAGATGAGGAGGAGAGCACTATGAATGAGGGTGAGGCTGCAGTATCCATTGCTCATGCCAAGCTGCTTGTTG-AGAGTGGTGTCCGTGCATCTGATATTGGAATAATTACACCTTATGCTGCACAGGTAACCTGTCTGAAGATGATGAGAAACAAAGATAC-TAAACTGAAGGACTTGGAGATATCGACAGTTGATGGGTTCCAGGGTAGGGAGAAAGAAGCCATCATCATTTCAATGGTCAGATCCAACTCAAAGAAAGAGGTCGGATTCTTAAGTGATCATAGACGAATGAATGTTGCTGTAACACGAGCCAGAAGGCAGTGCTGCCTAGTGTGCGATGTAGAGACCGTAAGCAACGACAAATTCTTGAAACGCTTGGTTGAGTACTTTGAGGAGAACGGGGAGTACTTGAGTGCATCAGAATACCAGAGCTGATGACTTGGGGTGTTAACCCTTAACCGTGATAGCCCGTGCTTATCGCAAAGATAGTGAAGAGATATATCCAAACGATGCTTGTGATAGGAACATCGTGCACTTCAAACTGGTGCAATATGGCCAATGGAGATACTGTCATTCGACTTTTATAGATTGGAAACAGATCGCTGTGAGACTGAACAGATAATTAGCTCAGGAGTGGATCAATTTCGTCTTGACTGGCCCTGTTCTGGTCTCTTCTTCTGTGGCTTATGGAAATGAAACCTCAGTTATGTGTTTTTATATGTCCGTTCTTTCAGCTGATGTACAATGATAGAAGACTAATTTTATTCATCCATGTGCAAATCTACCATAGTTTTTTGCATGGAGTTTTGAAACTTGGGTCCACAAAAATAGTAATAATAGGATAGGAGGTTGACTGTACTGAACTTCGCATGATAATTAATCTGTATCTCATCCAAAAAAAAGATTTCACAATGTCGCCCAAAATATAAAAATTNNTAAATTAATATATTTTTTATATAATTAATTAAATTAATA] [+] EMBL AK099721 [GAGACGAGTGAGAGGAGGAGAGCGGCCATGGCGGGGCGGAGTGGCGGCGGCGGCGGCGGGAGCTCCGGGAAGAGCGGGACGGGGAGGATGGTGTCGCTGCAGGAG TTCGTCTCGTCCATGGCGCCTCTCATAGACCTGGAGAAGGCGGCGGAGATATCGGCGGAGTCGGCGACGAGCTCGAAGACCCTCGAGAGGAGGGGTTGCGTCATGGCCAACCTCAAGTGCACCGACGCCCAGACGGGGCTGATGGGGAAGACGCTCCTGGAGTTCCAACCCAACAAGGGCGACGTGCTTCCACCTCACAAGTTTGGAACACACGATGTGG TTGCTCTGAAGCCAAATAAGGCAGATGCTGGATCTGCTGCTCTTGGGCAAGGTGTAGTTTATCG CTTGAAGGATTC TTCCATTACT GTTGCCTTT GATGACATTCCTGAAGATGGATTAAATAGCCCTCTCCGCC TTGAAAAGCTTGC AAAT GA GGTGACATACCGCAGGATGAAGGATGCACT AGTTCAACTTAGTAA GGGCATTCAAACAGGCCCTTCAGCAAACCTTATTCCTGTTTTGTTTGGAGAAAACCCACCTATGAGTTCCAAGGATGTTGCGAAGTTCAGTCCATTTAACAAGAATTTGGATGAGTCACAGAAAGATGCTATCTCGAAGGCCCTCAGGTCAAGGGATGTTTTCTTGCTTCATGGACCTCCTGGCACTGGGAAGACAACAACTATCATTGAGATAATATTGCAGGAGGTGAAACGTGGATCAAAGATTCTTGCTTGTGCTGCTTCTAACATCGCCGTGGATAACATTGTTGAGCGACTCTCCCGATATAGAACCAAATTGGTGAGGTTAGGCCATCCTGCTCGATTACTACCCCAAGTGTTGGACAGTGCTCTTGACGCACAGGTATTGCGAGCAGATAACAGCAGCTTAGCAGGAGATATTCGCAAAGAAATGAAGGTGCTTAATAGCAAATTGCTGAAAGCTAAGGATAAGAATACAAAAAGGGACATCAGGAAAGAGCTCAGAACCCTTGCCAAAGAAGAGAGAAAACGACAACAGCTTGCTGTTGCTGATGTGATAAAAAATGCAGATGTTGTACTGTCGACTTTGACTGGTGCATCTTCCAAAAAGCTAGATGGTATTACATTTGATTTGGTCATTATTGATGAAGCTGCTCAGGCACTTGAGATGGCATGTTGGATAGCCTTATTGAAGGGTCCAAGATGTGTGCTTGCTGGAGACCATCTTCAACTTCCTCCGACTATCCAAAGTGCTGAGGCTGAGAAGAAGGGGATGGGAAAGACACTCTTTGAACGCCTTACTGAAGCTTATGGAGATCAAATTACATCCATGCTCACTATCCAGTACAGAATGCATGAGCTCATAATGAATTGGTCATCTAAAGAACTTTATAATAACAAGATCAAAGCTCATTCTAGTGTTGCTGAT CATATGCTCTATGACATTG AAGAAGTGAAAAGA TCTTCTTCCACAGAGCCGAC TATCATACTAATTGACACTACTGGGTGTGACATGGAAGAAGTAAAAGATGAGGAGGAGAGCACTATGAATGAGGGTGAGGCTGCAGTATCCATTGCTCATGCCAAGCTGCTTGTTG AGAGTGGTGTCCGTGCATCTGATATTGGAATAATTACACCTTATGCTGCACAGGTAACCTGTCTGAAGATGATGAGAAACAAAGATAC TAAACTGAAGGACTTGGAGATATCGACAGTTGATGGGTTCCAGGGTAGGGAGAAAGAAGCCATCATCATTTCAATGGTCAGATCCAACTCAAAGAAAGAGGTCGGATTCTTAAGTGATCATAGACGAATGAATGTTGCTGTAACACGAGCCAGAAGGCAGTGCTGCCTAGTGTGCGATGTAGAGACCGTAAGCAACGACAAATTCTTGAAACGCTTGGTTGAGTACTTTGAGGAGAACGGGGAGTACTTGAGTGCATCAGAATACCAGAGCTGATGACTTGGGGTGTTAACCCTTAACCGTGATAGCCCGTGCTTATCGCAAAGATAGTGAAGAGATATATCCAAACGATGCTTGTGATAGGAACATCGTGCACTTCAAACTGGTGCAATATGGCCAATGGAGATACTGTCATTCGACTTTTATAGATTGGAAACAGATCGCTGTGAGACTGAACAGATAATTAGCTCAGGAGTGGATCAATTTCGTCTTGACTGGCCCTGTTCTGGTCTCTTCTTCTGTGGCTTATGGAAATGAAACCTCAGTTATGTGTTTTTATATGTCCGTTCTTTCAACTGATGTACAATGATAGAAGACTAATTTTATTCATCCATGTGCAAATCTACCATAGTTTTTTGCATGGAGTTTTGAAACTTGGGTCCACAAAAATAGTAATAATAGGATAGGAGGTTGACTGTACTGAACTTCGCATGATAATTAATCTG ] [+] EMBL C74482 [ GAGGAGGAGAGCGGCCATGGCGGGGCGGAGTGGCGGCGGCGGCGGCGGGAGCTCCGGGAAGAGCGGGACGGGGAGGATGGTGTCGCTGCAGGAG TTCGTCTCGTCCATGGCGCCTCTCATAGACCTGGAGAAGGCGGCGGAGATATCGGCGGAGTCGGCGACGAGCTCGAAGACCCTCGAGAGGAGGGGTTGCGTCATGGCCAACCTCAAGTGCACCGACGCCCAGACGGGGCTGATGGGGAAGACGCTCCTGGAGTTCCAACCCAACAAGGGCGACGTGCTTTCACCTCACAAGTTTGGAACACACGATGTGG TTNCTCTNAAGCCAAATAAGGCAGATGCTGGATCTNCTGCTCTTGGGCAAGGTGTA ] [+] EMBL C28852 [ CCATGGCGGGGCGGAGTGGCGGCGGCGGCGGCGGGAGCTCCGGGAAGAGCGGGACGGGGAGGATGGTGTCGCTGCAGGAGTTTCGTCTCGTCCATGGCGCCTCTCATAGACCTGGAGAAGGCGGCGGAGATATCGGCGGAGTCGGCGACGAGCTCGAAGACCCTCGANAGGAGGGGTTGCNTCATGGCCAACCTCAAGTGCACCGACGCCCAGACGGGGCTGATGGGGAAGACGCTCCTGGAGTTCCAACCCAACAAGGGCGACGTGCTTCCACCTCACAAGTTTGGAACACACGATGTGGTTTGCTCTNAAGCCAAATAAGGCAGATGCTGGATCTTCTGCTCTTGGGCAAGGTGTAGTTTATCGNTTTTAAGGATTC TTCCATTAATNGTTGCTTTT GATGA ] [+] EMBL AU064464 [ AGTGGCGGCGGCGGCGGCGGGAGCTCCGGGAAGAGCGGGACGGGGAGGATGGTGTCGCTGCAGGAG TTCGTCTCGTCCATGGCGCCTCTCATAGACCTGGAGAAGGCGGCGGAGATATCGGCGGAGTCGGCGACGAGCTCGAAGACCCTCGAGAGGAGGGGTTGCGTCATGGCCAACCTCAAGTGCACCGACGCCCAGACGGGGCTGATGGGGAAGACGCTCCTGGAGTTCCAACCCAACAAGGGCGANGTGCTTTCACCTCACAAGTTTtgg ] [+] EMBL C28781 [ CCATGGCGCCTCTCATAGACCTGGAGAAGGCGGCGGAGATATCGGCGGAGTCGGCGACGAGCTCGAAGACCCTCGAGAGGAGGGGTTGCGTCATGGCCAACCTCAAGTGCACCGACGCCCAGAC GGGCTGATGGGGAAGACGCTCCTGGAGTTCCAACCCAACAAGGGCGACGTGCTTCCACCTCACAAGTTTGGAACACACGATGTGG TTGCTCTGAAGCCAAATAAGGCAGATGCTGGATCTGCTGCTCTTGGGCAAGGTGTAGTTTATCG CTTGAAGGATTC TTCCATTACT GTTGCCTTT GATGACATTCCTGAAGATGGATTAAATAGCCCTCTCCGCC TTGAAAAG ] [+] EMBL AU091803 [ CATGGCGCCTCTCATAGACCTGGAGAAGGCGGCGGAGATATCGGCGGAGTCGGCGACGAGCTCGAAGACCCTCGAGAGGAGGGGTTGCGTCATGGCCAACCTCAAGTGCACCGACGCCCAGACGGGGCTGATGGGGAAGACGCTCCTGGAGTTCCAACCCAACAAGGGCGACGTGCTTCCACCTCACAAGTTTGGAACACACGATGTGG TTGCTCTGAAGCCAAATAAGGCAGATGCTGGATCTGCTGCTCTTGGGCAAGGTGTAGTTTATCG CTTGAAGGATTC TTCCATTACT GTTGCCTTT GATGACATTCCTGAAGATGGATTAAATAGCCCTCTCCGCC TTGAAAAGCTTGC AAATNAA GGTGACATACCGCAGGATGAAGGATGCACT AGTTCAACTTAGTAAGGGGCATTCAAACAGGGCCTTCAGCAAACCTTATT ] [+] EMBL AU091799 [ CATGGCGCCTCTCATAGACCTGGAGAAGGCGGCGGAGATATCGGCGGAGTCGGCGACGAGCTCGAAGACCCTCGAGAGGAGGGGTTGCGTCATGGCCAACCTCAAGTGCACCGACGCCCAGACGGGGCTGATGGGGAAGACGCTCCTGGAGTTCCAACCCAACAAGGGCGACGTGCTTCCACCTCACAAGTTTGGAACACACGATGTGG TTGCTCTGAAGCCAAATAAGGCAGATGCTGGATCTGCTGCTCTTGGGCAAGGTGTAGTTTATCG CTTGAAGGATTC TTCCATTACT GTTGCCTTT GATGACATTCCTGAAGATGGATTAAATAGCCCTCTCCGCC TTGAAAAGCTTGC AAAT AA GGTGACATACCGCAGATTGAAGGATGCACT AGTTCAACTTAGTAA GGGCATTCAAACAGGNCCTTCAGCAAANCTTATTCCTG ] [+] EMBL C28812 [ CATGGCGCCTCTCATAGACCTGGAGAAGGCGGCGGAGATATCGGCGGAGTCGGCGACGAGCTCGAAGACCCTCGAGAGGAGGGGTTGCGTCATGGCCAACCTCAAGTGCACCGACGCCCAGACGGGGCTGATGGGGAAGACGCTCCTGGAGTTCCAACCCAACAAGGGCGACGTGCTTCCACCTCACAAGTTTGGAACACACGATGTGG TTGCTCTGAAGCCAAATAAGGCAGATGCTGGATCTGCTGCTCTTGGGCAAGGTGTAGTTTATCG CTTGAAGGATTCTTTCCATTACT GTTGCCTTTNGATGACATTCCTGAAGATGGATTAAATAGCCCTCTNCGCCTTTGAAAAGCTTTCAAAAT GAGGGTGACATACCCCAGGATGAAGGNTGCACTAAGTTCAACTTAGTtaa ] [+] EMBL C97600 [ GTTGCTGATCCATATGCTCTATGACATTGAAAGAATTGAAAAGATTCTTCTCCCACAGACCCGACTTTTCATACTAAATNGCCCTACTGGNTGTGACCTGGAAGAAGTAAAAGATGAGGAGGAGACCNCTATGAATGAGGTTGAGGCTGCAGTATCCATTGCTCATGCCAAGCTGCTTGTTG AGAGTGGTGTCCGTGCATCTGATATTGGAATAATTACACCTTATGCTGCACAGGTAACCTGTCTGAAGATGATGAGAAACAAAG TAC TAAACTGAAGGACTTGGAGATATCGACAGTTGATGGGTTCCAGGGTAGGGAGAAAGAAGCCATCATCATTTCAATGGTCAGATCCAACTCAAAGAAAGAGGTCGGATTCTTAAGTGATCATAGACGAATGAATGTTGCTGTAACACGAGCCAGAAGGCAGTGCTGCCTAGTGTGCGATGTAGAGACCGTAAGCAACGACAAATTCTTGAAACGCTTGGTTGAGTACTTTGAGGAGAACGGGGAGTACTTGAGTGCATCAGAATACCAGAGCTGATGACTTGGGGTGTTAACCCTTAACCGTGATAGCCCGTGCTTATCGCAAAGATAGTGAAGAGATATATCCAAACGATGCTTGTGATAGGAACATCGTGCACTTCAAACTGGTGCAATATGGCCAATGGAGATACTGTCATTCGACTTTTATAGATTGGAAACAGATCGCTGTGAGACTGAACAGATAATTAGCTCAGGAGTGGATCAATTTCGTCTTGACTGGCCCTGTTCTGGTCTCTTCTTCTGTGGCTTATGGAAATGAAACCTCAGTTATGTGTTTTTAa ] [+] EMBL AU225137 [ gccgctGA TCTTCTTCCACAGAGCCGAC TATCATACTAATTGACACTACTGGGTGTGACATGGAAGAAGTAAAAGATGAGGAGGAGAGCACTATGAATGAGGGTGAGGCTGCAGTATCCATTGCTCATGCCAAGCTGCTTGTTG AGAGTGGTGTCCGTGCATCTGATATTGGAATAATTACACCTTATGCTGCACAGGTAACCTGTCTGAAGATGATGAGAAACAAAGATAC TAAACTGAANGACTTGGACATATCGACAGTTGATGGGTTCCAGGGTAGGGAGAAAGANGCCATCATCATTTC ATGGTCAG ] [+] EMBL C97564 [ AAGATGAGGAGGAGAGCACTATGAATGAGGTTGAGGCTGCAGTATCCATTGCTCATGCCAAGCTGCTTGTTG AGANTGGTGTCCGTGCATCTGATATTGGAATAATTACACCTTATGCTGCACAGGTAACCTGTCTGAAGATGATGAGAAACAAAGATAC TAAACTGAAGGACTTGGAGATATCGACAGTTGATGGGTTCCAGGGTAGGGAGAAAGAAGCCATCATCATTTCAATGGTCAGATCCAACTCAAAGAAAGAGGTCGGATTCTTAAGTGATCATAGACGAATGAATGTTGCTGTAACACGAGCCAGAAGGCAGTGCTGCCTAGTGTGCGATGTAGAGACCGTAAGCAACGACAAATTCTTGAAACGCTTGGTTGAGTACTTTGAGGAGAACGGGGAGTACTTGAGTGCATCAGAATACCAGAGCTGATGACTTGGGGTGTTAACCCTTAACCGTGATAGCCCGTGCTTATCGCAAAGATAGTGAAGAGATATATCCAAACGATGCTTGTGATAGGAACATCGTGCACTTCAAACTGGTGCAATATGGCCAATGGAGATACTGTCATTCGACTTTTATAGATTGGAAACAGATCGCTGTGAGACTGAACAGATAATTAGCTCAGGAGTGGATCAATTTCGTCTTGACTGGCCCTGTTCTGGTCTCTTCTTCTGTGGCTTATGGAAATGAAACCTCAGTTATGTGTTTTTAaaaaaaaa ] [+] EMBL AU161427 [ cCAGTATCCATTGCTCATGCCAAGCTGCTTGTTGAAAAGTGGTGCCCGTGCATCTGATATTGGAATAATTACNCCTTATGCTGCACAGGTAACCTGTCTGAAGATGATGAGAACCAAAGATACTTAAACTGAAGGACTTGGAGATATCGACAGTTGATGGGTTCCAGGGTAGGGAGAAAGAAGCCATCATCATTTCAATGGTCAGATCCAACTCAAAGAAAGAGGTCGGATTCTTAAGTGATCATAGACGAATGAATGTTGCTGTAACACGAGCCAGAAGGCAGTGCTGCCTAGTGTGCGATGTAGAGACCGTAAGCAACGACAAATTCTTGAAACGCTTGGTTGAGTACTTTGAGGAGAACGGGGAGTACTTGAGTGCATCAGAATACCAGAGCTGATGACTTGGGGTGTTAACCCTTAACCGTGATAGCCCGTGCTTATCGCAAAGATAGTGAAGAGATATATCCAAACGATGCTTGTGATAGGAACATCGTGCACTTCAAACTGGTGCAATATGGCCAATGGAGATACTGTCATTCGACTTTTATAGATTGGAAACAGATCGCTGTGAGACTGAACAGATAATTAGCTCAGGAGTGGATCAATTTCGTCTTGACTGGCCCTGTTCTGGTCTCTTCTTCTGTGGCTTATGGAAATGAAACCTCAGTTATGTGTTTTTAaaaaaaaa ] [-] EMBL CB672048 [ AC TAAACTGAAGGACTTGGAGATATCGACAGTTGATGGGTTCCAGGGTAGGGAGAAAGAAGCCATCATCATTTCAATGGTCAGATCCAACTCAAAGAAAGAGGTCGGATTCTTAAGTGATCATAGACGAATGAATGTTGCTGTAACACGAGCCAGAAGGCAGTGCTGCCTAGTGTGCGATGTAGAGACCGTAAGCAACGACAAATTCTTGAAACGCTTGGTTGAGTACTTTGAGGAGAACGGGGAGTACTTGAGTGCATCAGAATACCAGAGCTGATGACTTGGGGTGTTAACCCTTAACCGTGATAGCCCGTGCTTATCGCAAAGATAGTGAAGAGATATATCCAAACGATGCTTGTGATAGGAACATCGTGCACTTCAAACTGGTGCAATATGGCCAATGGAGATACTGTCATTCGACTTTTATAGATTGGAAACAGATCGCTGTGAGACTGAACAGATAATTAGCTCAGGAGTGGATCAATTTCGTCTTGACTGGCCCTGTTCTGGTCTCTTCTTCTGTGGCTTATGGAAATGAAACCTCAGTTATGTGTTTTTATATGTCCGTTCTTTCAGCTGATGTACAATGATAGAAGACTAATTTTATTCATCCATGTGCAAATCTACCATAGTTTTTTGCATGGAGTTTTGAAACTTGGGTCCACAAAAATAGTAATAATAGGATAGGAGGTTGACTGTACTGAACTTCGCATGATAATTAATCTGTATCTCATCCAAAAAAAAGA ] [+] EMBL BE040193 [ AGTGTGCGATGTAGAGACCGTAAGCAACGACAAATTCTTGAAACGCTTGGTTGAGTACTTTGAGGAGAACGGGGAGTACTTGAGTGCATCAGAATACCAGAGCTGATGACTTGGGGTGTTAACCCTTAACCGTGATAGCCCGTGCTTATCGCAAAGATAGTGAAGAGATATATCCAAACGATGCTTGTGATAGGAACATCGTGCACTTCAAACTGGTGCAATATGGCCAATGGAGATACTGTCATTCGACTTTTATAGATTGGAAACAGATCGCTGTGAGACTGAACAGATAATTAGCTCAGGAGTGGATCAATTTCGTCTTGACTGGCCCTGTTCTGGTCTCTTCTTCTGTGGCTTATGGAAATGAAACCTCAGTTATGTGTTTTTATATGTCCGTTCTTTCAGCTGATGTACAATGATAGAAGACTAATTTTATTCATCCATGTGCAAATCTACCATAGTTTTTTGCATGGAGTTTTGAAACTTGGGTCCACAAAAATAGTAATAATAGGATAGGAGGTTGACTGTACTGAACTTCGCATGATAATTAATCTGTATCTCATCCATCTTGCTTATTTCACAATGTCGCCCAAAATATAAAAATTNNTAAATTAATATATTTTTTATATAATTAATTAAATTAATA] consensusID : consensus_14527#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 824 fasta sequence [ATACTAACTGAAGGACTTGGAGATATCGACATTGATGGGTTCCACAGGGTAGGGAGAAAGAACCACTCTATCATTTCCATGGGCACGATCCCCACAATCNCAGAGANAGGGCTCTCGGATTTTNNTAAAGTNGNATTCAATAAGCGGAATGNGAATGGTTTCCTTGTTAAACCCGGACCCCTAGAAGCCCACGTCTCCNTAGTGTGCCGATGTAGAGACCGTAAGCAACGACAAATTCTTGAAACGCTTGGTTGAGTACTTTGAGGAGAACCGGGGAGTACTTGAGTGCATCAGAATACCACGAGCTGATGACTTGGGGTGTTAACCCTTAACCGTGATAGCCCGTGCTTATCGCAAAGATAGTGAAGAGATATATCCCAACGATGCTTGTGATAGGAACATCGTGCACTTCAAACTGGTGCAATATGGCCCATGGAGATACTGTCATTCGACTTTTATAGATTGGAAACAGATCGCTGTGAGACTGAACAGATAATTAGCTCAGGAGTGGATCAATTTCGTCTTGACTGGCCCTGTTCTGGTCTCTTCTTCTGTGGCTTATGGAAATGAAACCTCAGTTATGTGTTTTTATATGTCCGTTCTTTCAGCTGATGTACAATGATAGAAGACTAATTTTATTCATCCATGGGCAAATCTACCATAGTTTTTTGCATGGAGTTTTGAAAAAAAAAACCNCAAAAATAGTAATAATNGGATAGGAGGTTGACTGTACTGAACTTCGCATGATAATTAATCTGTATCTCATCCATCTTGCTTATTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BM422035 [ATACTAACTGAAGGACTTGGAGATATCGACATTGATGGGTTCCACAGGGTAGGGAGAAAGAACCACTCTATCATTTCCATGGGCACGATCCCCACAATCNCAGAGANAGGGCTCTCGGATTTTNNTAAAGTNGNATTCAATAAGCGGAATGNGAATGGTTTCCTTGTTAAACCCGGACCCCTAGAAGCCCACGTCTCCNTAGTGTGCCGATGTAGAGACCGTAAGCAACGACAAATTCTTGAAACGCTTGGTTGAGTACTTTGAGGAGAACCGGGGAGTACTTGAGTGCATCAGAATACCACGAGCTGATGACTTGGGGTGTTAACCCTTAACCGTGATAGCCCGTGCTTATCGCAAAGATAGTGAAGAGATATATCCCAACGATGCTTGTGATAGGAACATCGTGCACTTCAAACTGGTGCAATATGGCCCATGGAGATACTGTCATTCGACTTTTATAGATTGGAAACAGATCGCTGTGAGACTGAACAGATAATTAGCTCAGGAGTGGATCAATTTCGTCTTGACTGGCCCTGTTCTGGTCTCTTCTTCTGTGGCTTATGGAAATGAAACCTCAGTTATGTGTTTTTATATGTCCGTTCTTTCAGCTGATGTACAATGATAGAAGACTAATTTTATTCATCCATGGGCAAATCTACCATAGTTTTTTGCATGGAGTTTTGAAAAAAAAAA ] [+] EMBL AU166118 [ ATCGCAAAGATAGTGAAGAGATATNTCCAAACGATGCTTGTGATAGGANCATCGTGCACTTCAAACTGGTGCAATATGGCCAATGGAGATACTGTCATTCGACTTTTATAGATTGGAAACAGATCGCTNTGAGACTGAACAGATAATTAGCTCAGGNGTGGATCAATTTCGTCTTGACTGGCCCTGTTCTGGTCTCTTCTTCTGTGGCTTNTGGAAATGAAACCTCAGTTATGTGTTTTTATATGTCCGTTCTTTCAGCTGATGTACAATGATAGAAGACTAATTTTATTCATCCATGTGCAAATCTACCATAGTTTTTTGCATGGAGTTTTGAAACTTGGGTCCNCAAAAATAGTAATAATNGGATAGGAGGTTGACTGTACTGAACTTCGCATGATAATTAATCTGTATCTCATCCATCTTGCTTATTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14527#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence [CNGGAGAGCNGCCATNGNNGGCGGANTNGCNGCNGCNGCNGCGGNGANTCCGGGAAGAGCGTGACGGGGAGGATGGTGTCGCTGCAGGAGTTCGTCTCGTCCATGGCGCCTCTCATAGACCTGGAGAAGGCGGCGGAGNTATCGGCGGAGTCGGCGACGAGCTCNGAAGACCCTCGAGAGGAGGGGTTNCGTCATGGCCAACCTCAAGTGCACCGACGCCCAGACGGGCTTTAATNGGGAANGACGCTCCTNGGA] [+] EMBL AU062864 [CNGGAGAGCNGCCATNGNNGGCGGANTNGCNGCNGCNGCNGCGGNGANTCCGGGAAGAGCGTGACGGGGAGGATGGTGTCGCTGCAGGAGTTCGTCTCGTCCATGGCGCCTCTCATAGACCTGGAGAAGGCGGCGGAGNTATCGGCGGAGTCGGCGACGAGCTCNGAAGACCCTCGAGAGGAGGGGTTNCGTCATGGCCAACCTCAAGTGCACCGACGCCCAGACGGGCTTTAATNGGGAANGACGCTCCTNGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14527#0 ------------------------------------------------------------ consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ATACTAACTGAAGGACTTGGAGATATCGACATTGATGGGTTCCACAGGGTAGGGAGAAAG 60 consensus_14527#0 ------------------------------------------------GAGACGAGTGAG 12 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 AACCACTCTATCATTTCCATGGGCACGATCCCCACAATCNCAGAGANAGGGCTCTCGGAT 120 consensus_14527#0 AGGAGGAGAGCGGCCATGGCGGGGCGGAGTGGCGGCGGCGGCGGCGGGAGCTCCGGG--- 69 consensus_14527#2 --CNGGAGAGCNGCCATNGNNGG-CGGANTNGCNGCNGCNGCNGCGGNGANTCCGGG--- 54 consensus_14527#1 TTTNNTAAAGTNGNATTCAATAAGCGGAATGNGAATGGTTTCCTTGTTAAACCCGGACCC 180 * ** * * **** * * * * **** consensus_14527#0 --AAGAGCGGGACGGGGAGGATGGTGTCGCTGCAGGAGTTCGTCTCGTCCATGGCGCCTC 127 consensus_14527#2 --AAGAGCGTGACGGGGAGGATGGTGTCGCTGCAGGAGTTCGTCTCGTCCATGGCGCCTC 112 consensus_14527#1 CTAGAAGCCCACGTCTCCNTAGTGTGCCGATGTAGAGACCGTAAGCAACGACAAATTCTT 240 * *** * *** ** ** ** * * * ** consensus_14527#0 TCATAGACCTGGAGAAGGCGGCGGAGATATCGGCGGAGTCGGCGACGAGCTCG-AAGACC 186 consensus_14527#2 TCATAGACCTGGAGAAGGCGGCGGAGNTATCGGCGGAGTCGGCGACGAGCTCNGAAGACC 172 consensus_14527#1 GAAACGCTTGGTTGAGTACTTTGAGGAGAACCGGGGAGTACTTGAGTGCATCAGAATACC 300 * * * ** * * * * * * ***** ** ** ** *** consensus_14527#0 CTCGAGAGGAGGGGTTGCGTCATGGCCAACCTCAAGTGCA----CCGACGCCCAGACGGG 242 consensus_14527#2 CTCGAGAGGAGGGGTTNCGTCATGGCCAACCTCAAGTGCA----CCGACGCCCAGACGGG 228 consensus_14527#1 A-CGAGCTGATGACTTGGG--GTGTTAACCCTTAACCGTGATAGCCCGTGCTTATCGCAA 357 **** ** * ** * ** * *** ** * ** ** * consensus_14527#0 GCTGA--TGGGGAAGACGCTCCTGGAGTTCCAACCCAACAAGGGCGACGTGCTTCCACCT 300 consensus_14527#2 CTTTAATNGGGAANGACGCTCCTNGGA--------------------------------- 255 consensus_14527#1 AGATAGTGAAGAGATATATCCCAACGATGCTTGTGATAGGAACATCGTGCACTTCAAACT 417 * * * ** consensus_14527#0 CACAAGTTTGGAACACACGATGTGGTTGCTCTGAAGCCAAATAAGGCAGATGCTGGATCT 360 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 GGTGCAATATGGCCCATGGAGATACTGTCATTCGACTTTTATAGATTGGAAACAGATCGC 477 consensus_14527#0 GCTGCTCTTGGGCAAGGTGTAGTTTATCGCTTGAAGGATTCTTCCATTACTGTTGCCTTT 420 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 TGTGAGACTGAACAGATAATTAGCTCAGGAGTGGATCAATTTCGTCTTGACTGGCCCTGT 537 consensus_14527#0 GATGACATTCCTGAAGATGGATTAAATAGCCCTCTCCGCCTTGAAAAGCTTGCAAATGAG 480 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 TCTGGTCTCTTCTTCTGTGGCTTATGGAAATGAAACCTCAGTTATGTGTTTTTATATGTC 597 consensus_14527#0 GTGACATACCGCAGGATGAAGGATGCACTAGTTCAACTTAGTAAGGGCATTCAAACAGGG 540 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 CGTTCTTTCAGCTGATGTACAATGATAGAAGACTAATTTTATTCATCCATGGGCAAATCT 657 consensus_14527#0 CCTTCAGCAAACCTTATTCCTGTTTTGTTTGGAGAAAACCCACCTATGAGTTCCAAGGAT 600 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ACCATAGTTTTTTGCATGGAGTTTTGAAAAAAAAAACCNCAAAAATAGTAATAATNGGAT 717 consensus_14527#0 GTTGCGAAGTTCAGTCCATTTAACAAGAATTTGGATGAGTCACAGAAAGATGCTATCTCG 660 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 AGGAGGTTGACTGTACTGAACTTCGCATGATAATTAATCTGTATCTCATCCATCTTGCTT 777 consensus_14527#0 AAGGCCCTCAGGTCAAGGGATGTTTTCTTGCTTCATGGACCTCCTGGCACTGGGAAGACA 720 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ATTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------- 824 consensus_14527#0 ACAACTATCATTGAGATAATATTGCAGGAGGTGAAACGTGGATCAAAGATTCTTGCTTGT 780 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 GCTGCTTCTAACATCGCCGTGGATAACATTGTTGAGCGACTCTCCCGATATAGAACCAAA 840 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 TTGGTGAGGTTAGGCCATCCTGCTCGATTACTACCCCAAGTGTTGGACAGTGCTCTTGAC 900 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 GCACAGGTATTGCGAGCAGATAACAGCAGCTTAGCAGGAGATATTCGCAAAGAAATGAAG 960 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 GTGCTTAATAGCAAATTGCTGAAAGCTAAGGATAAGAATACAAAAAGGGACATCAGGAAA 1020 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 GAGCTCAGAACCCTTGCCAAAGAAGAGAGAAAACGACAACAGCTTGCTGTTGCTGATGTG 1080 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 ATAAAAAATGCAGATGTTGTACTGTCGACTTTGACTGGTGCATCTTCCAAAAAGCTAGAT 1140 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 GGTATTACATTTGATTTGGTCATTATTGATGAAGCTGCTCAGGCACTTGAGATGGCATGT 1200 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 TGGATAGCCTTATTGAAGGGTCCAAGATGTGTGCTTGCTGGAGACCATCTTCAACTTCCT 1260 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 CCGACTATCCAAAGTGCTGAGGCTGAGAAGAAGGGGATGGGAAAGACACTCTTTGAACGC 1320 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 CTTACTGAAGCTTATGGAGATCAAATTACATCCATGCTCACTATCCAGTACAGAATGCAT 1380 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 GAGCTCATAATGAATTGGTCATCTAAAGAACTTTATAATAACAAGATCAAAGCTCATTCT 1440 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 AGTGTTGCTGATCATATGCTCTATGACATTGAAGAAGTGAAAAGATCTTCTTCCACAGAG 1500 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 CCGACTATCATACTAATTGACACTACTGGGTGTGACATGGAAGAAGTAAAAGATGAGGAG 1560 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 GAGAGCACTATGAATGAGGGTGAGGCTGCAGTATCCATTGCTCATGCCAAGCTGCTTGTT 1620 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 GAGAGTGGTGTCCGTGCATCTGATATTGGAATAATTACACCTTATGCTGCACAGGTAACC 1680 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 TGTCTGAAGATGATGAGAAACAAAGATACTAAACTGAAGGACTTGGAGATATCGACAGTT 1740 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 GATGGGTTCCAGGGTAGGGAGAAAGAAGCCATCATCATTTCAATGGTCAGATCCAACTCA 1800 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 AAGAAAGAGGTCGGATTCTTAAGTGATCATAGACGAATGAATGTTGCTGTAACACGAGCC 1860 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 AGAAGGCAGTGCTGCCTAGTGTGCGATGTAGAGACCGTAAGCAACGACAAATTCTTGAAA 1920 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 CGCTTGGTTGAGTACTTTGAGGAGAACGGGGAGTACTTGAGTGCATCAGAATACCAGAGC 1980 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 TGATGACTTGGGGTGTTAACCCTTAACCGTGATAGCCCGTGCTTATCGCAAAGATAGTGA 2040 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 AGAGATATATCCAAACGATGCTTGTGATAGGAACATCGTGCACTTCAAACTGGTGCAATA 2100 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 TGGCCAATGGAGATACTGTCATTCGACTTTTATAGATTGGAAACAGATCGCTGTGAGACT 2160 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 GAACAGATAATTAGCTCAGGAGTGGATCAATTTCGTCTTGACTGGCCCTGTTCTGGTCTC 2220 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 TTCTTCTGTGGCTTATGGAAATGAAACCTCAGTTATGTGTTTTTATATGTCCGTTCTTTC 2280 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 AGCTGATGTACAATGATAGAAGACTAATTTTATTCATCCATGTGCAAATCTACCATAGTT 2340 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 TTTTGCATGGAGTTTTGAAACTTGGGTCCACAAAAATAGTAATAATAGGATAGGAGGTTG 2400 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 ACTGTACTGAACTTCGCATGATAATTAATCTGTATCTCATCCAAAAAAAAGATTTCACAA 2460 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 TGTCGCCCAAAATATAAAAATTNNTAAATTAATATATTTTTTATATAATTAATTAAATTA 2520 consensus_14527#2 ------------------------------------------------------------ consensus_14527#1 ------------------------------------------------------------ consensus_14527#0 ATA 2523 consensus_14527#2 --- consensus_14527#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||