cluster # 1453

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Oryza sativa
cluster # 1453 cluster # 1453 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1453#0 length = 598 sequences # 1

consensus_1453#1 length = 495 sequences # 1

consensusID : consensus_1453#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 598
fasta sequence

                              [CGGNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAATCAGGATATCAGTTTTTATTATTCTATAACAATATGTAATCCAAAAAACGATTATTTAAAAAAATAATTATTAAGGCCCAGCATATCGGAAATATACCAGAAAAAAAAGTTTGAGATATGTGTAACGCTTCGACGTTTTGGGAATGGGATTGTATCACCTAATACCGATGTTTGATTTATTCAATATGACGGGGGGACTTCCTGCCTGCGTCATTGATAATGGCACAGGTTATACAAAATTAGGTTATGCTGGTAATAATGAACCGCATTTTATCATTCCATCGGGTATTGCCGTTCGTGAACGTCCAGGTGCCAGTCGTATTGGACAATCAGGAGAAGATTTAAATTTCTTTATTGGGGATGAAACATTTGGTGCTTAAGGTTACTCGATAAAGTATCCTATTCGACATGGTATTGTCGAAAATTGGGATTTGATGGAAAAATATTGGGAACATTGGTTATTAAATATCTTCGGTGAGATCCAGAGAATATAACTTTCTTTTTGACGGACCACCCTTGAATACCCAAAAAATCGTGGATATTCTGCAGAAAATATG]

[+] EMBL CA753794             [CGGNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAATCAGGATATCAGTTTTTATTATTCTATAACAATATGTAATCCAAAAAACGATTATTTAAAAAAATAATTATTAAGGCCCAGCATATCGGAAATATACCAGAAAAAAAAGTTTGAGATATGTGTAACGCTTCGACGTTTTGGGAATGGGATTGTATCACCTAATACCGATGTTTGATTTATTCAATATGACGGGGGGACTTCCTGCCTGCGTCATTGATAATGGCACAGGTTATACAAAATTAGGTTATGCTGGTAATAATGAACCGCATTTTATCATTCCATCGGGTATTGCCGTTCGTGAACGTCCAGGTGCCAGTCGTATTGGACAATCAGGAGAAGATTTAAATTTCTTTATTGGGGATGAAACATTTGGTGCTTAAGGTTACTCGATAAAGTATCCTATTCGACATGGTATTGTCGAAAATTGGGATTTGATGGAAAAATATTGGGAACATTGGTTATTAAATATCTTCGGTGAGATCCAGAGAATATAACTTTCTTTTTGACGGACCACCCTTGAATACCCAAAAAATCGTGGATATTCTGCAGAAAATATG]




>consensus_1453#0
CGGNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAATCAGGATATCAGTTTTTAT
TATTCTATAACAATATGTAATCCAAAAAACGATTATTTAAAAAAATAATTATTAAGGCCC
AGCATATCGGAAATATACCAGAAAAAAAAGTTTGAGATATGTGTAACGCTTCGACGTTTT
GGGAATGGGATTGTATCACCTAATACCGATGTTTGATTTATTCAATATGACGGGGGGACT
TCCTGCCTGCGTCATTGATAATGGCACAGGTTATACAAAATTAGGTTATGCTGGTAATAA
TGAACCGCATTTTATCATTCCATCGGGTATTGCCGTTCGTGAACGTCCAGGTGCCAGTCG
TATTGGACAATCAGGAGAAGATTTAAATTTCTTTATTGGGGATGAAACATTTGGTGCTTA
AGGTTACTCGATAAAGTATCCTATTCGACATGGTATTGTCGAAAATTGGGATTTGATGGA
AAAATATTGGGAACATTGGTTATTAAATATCTTCGGTGAGATCCAGAGAATATAACTTTC
TTTTTGACGGACCACCCTTGAATACCCAAAAAATCGTGGATATTCTGCAGAAAATATG

consensusID : consensus_1453#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 495
fasta sequence

                              [TTTCTTTCTCATGTGGTTTCTNCTAANATCATGATATCAGTTTTTATTATTCTATAACAATATGTAATCCAAAAAACGATAATTTAAAAAAATAATTATTAAGGCACAGCATATCGGAAATATACAAGAGAAGAAAGTTTGAGATATGTGTAACGCTTCGACGTTTTGTGAATGTGATTGTATCAGCTAATACCGATGTTTGATCGATGTTTGTCCCGAAAAAATTCATTTGATATATCACAAACACAAAATATTCACGTGTTTAACGTAAACATTTATCGGCCCCATAAACCGAGACCCCATAAACCGTAACCACCGAAACCGAAACCGAATGGTGAGAAGAGCCATGGATTATATAATCCTAAACCCAAACCCCAAAAAGCTTCCGAAACGGTAGCAAGGAGAGCAACGAGTAAAGCAAGAACGACTAATAATTGAGCGAACATTTTGCTTGAAAATTGAAAGTGAATTTGTATTTGAAGTAGAAGAAATTTG]

[-] EMBL CA756296             [TTTCTTTCTCATGTGGTTTCTNCTAANATCATGATATCAGTTTTTATTATTCTATAACAATATGTAATCCAAAAAACGATAATTTAAAAAAATAATTATTAAGGCACAGCATATCGGAAATATACAAGAGAAGAAAGTTTGAGATATGTGTAACGCTTCGACGTTTTGTGAATGTGATTGTATCAGCTAATACCGATGTTTGATCGATGTTTGTCCCGAAAAAATTCATTTGATATATCACAAACACAAAATATTCACGTGTTTAACGTAAACATTTATCGGCCCCATAAACCGAGACCCCATAAACCGTAACCACCGAAACCGAAACCGAATGGTGAGAAGAGCCATGGATTATATAATCCTAAACCCAAACCCCAAAAAGCTTCCGAAACGGTAGCAAGGAGAGCAACGAGTAAAGCAAGAACGACTAATAATTGAGCGAACATTTTGCTTGAAAATTGAAAGTGAATTTGTATTTGAAGTAGAAGAAATTTG]




>consensus_1453#1
TTTCTTTCTCATGTGGTTTCTNCTAANATCATGATATCAGTTTTTATTATTCTATAACAA
TATGTAATCCAAAAAACGATAATTTAAAAAAATAATTATTAAGGCACAGCATATCGGAAA
TATACAAGAGAAGAAAGTTTGAGATATGTGTAACGCTTCGACGTTTTGTGAATGTGATTG
TATCAGCTAATACCGATGTTTGATCGATGTTTGTCCCGAAAAAATTCATTTGATATATCA
CAAACACAAAATATTCACGTGTTTAACGTAAACATTTATCGGCCCCATAAACCGAGACCC
CATAAACCGTAACCACCGAAACCGAAACCGAATGGTGAGAAGAGCCATGGATTATATAAT
CCTAAACCCAAACCCCAAAAAGCTTCCGAAACGGTAGCAAGGAGAGCAACGAGTAAAGCA
AGAACGACTAATAATTGAGCGAACATTTTGCTTGAAAATTGAAAGTGAATTTGTATTTGA
AGTAGAAGAAATTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1453#0      CGGNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAATCAGGATATCAGTTTTTAT 60
consensus_1453#1      -------------TTTCTTTCTCATGTGGTTTCTNCTAANATCATGATATCAGTTTTTAT 47
                                   *** *** *  * *  *** *   ** **** ***************

consensus_1453#0      TATTCTATAACAATATGTAATCCAAAAAACGATTATTTAAAAAAATAATTATTAAGGCCC 120
consensus_1453#1      TATTCTATAACAATATGTAATCCAAAAAACGATAATTTAAAAAAATAATTATTAAGGCAC 107
                      ********************************* ************************ *

consensus_1453#0      AGCATATCGGAAATATACCAGAAAAAAAAGTTTGAGATATGTGTAACGCTTCGACGTTTT 180
consensus_1453#1      AGCATATCGGAAATATACAAGAGAAGAAAGTTTGAGATATGTGTAACGCTTCGACGTTTT 167
                      ****************** *** ** **********************************

consensus_1453#0      GGGAATGGGATTGTATCACCTAATACCGATGTTTGATTTATTCAATATGACGGGGGGACT 240
consensus_1453#1      GTGAATGTGATTGTATCAGCTAATACCGATGTTTGATCGATGTT-TGTCCCGAAAAAATT 226
                      * ***** ********** ******************  **    * *  **     * *

consensus_1453#0      TCCTGCCTGCGTCATTGATAATGGCACAGGTTATACAAAATTAGGTTATGCTGGTAATAA 300
consensus_1453#1      ------------CATTTGATATATCACAA---ACACAAAAT--ATTCACGTGTTTAACG- 268
                                  ****    **  ****    * *******    * * *    ***   

consensus_1453#0      TGAACCGCATTTTATCATTCCATCGGGTATTGCCGTTCGTGAACGTCCAGGTGCCAGTCG 360
consensus_1453#1      TAAAC---ATTTATCGGCCCCATAAACCGAGACC--CCATAAAC--------------CG 309
                      * ***   ****       ****         **   * * ***              **

consensus_1453#0      TATTGGACAATCAGGAGAAGATTTAAATTTCTTTATTGGGGATGAAACATTTGGTGCTTA 420
consensus_1453#1      TA----ACCACCGAAACCGAAACCGAATGGTGAGAAGAGCCATGGATTATATAAT-CCTA 364
                      **    ** * *   *    *    ***      *   *  *** *  ** *  * * **

consensus_1453#0      AGGTTACTCGATAAAGTATCCTATTCGACATGGTATTGTCGAAAATTGGGATTTGATGGA 480
consensus_1453#1      AACCCAAACCCCAAAAAGCT---TCCGAAACGGTAGCAAGGAGAGCAACGAGTAAAGCAA 421
                      *    *  *   ***        * *** * ****     ** *     ** *  *   *

consensus_1453#0      AAAATATTGGGAACATTGGTTATTAAATATCTTCGGTGAGATCCAGAGAATATAACTTTC 540
consensus_1453#1      GAACGACTAATAAT-----TGAGCGAACATTTTGCTTGAAAATT-GAAAGTGAATTTGTA 475
                       **  * *   **      * *   ** ** **   *** *    ** * *  *  * * 

consensus_1453#0      TTTTTGACGGACCACCCTTGAATACCCAAAAAATCGTGGATATTCTGCAGAAAATATG 598
consensus_1453#1      TTTGAAGTAGAAGAAATTTG-------------------------------------- 495
                      ***      **  *   ***